Pregenerated sensors for C8B (Mus musculus)
Ensembl gene IDs: ENSMUSG00000029656Ensembl transcript IDs: ENSMUST00000031663.10, ENSMUST00000065072.7
Found 81 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | GCAGAGTGTGCAAAGGGAGGTTCACCATGCAAGGACTTAGGGTTTTaGTCAATCCACTGTTTACTCAAATTATCATGCACTGATCAAACA | + |
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Preference number: 1 (lower is better) Translates to: AECAKGGSPCKDLGF*SIHCLLKLSCTDQT Trigger: TGTTTGATCAGTGCATGATAATTTGAGTAAACAGTGGATTGAGCAAAACCCTAAGTCCTTGCATGGTGAACCTCCCTTTGCACACTCTGC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031663.10 |
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| 3UTR CCA 90 bp | ACCTACTATGTGTCTTTGTCACTACATGGTGACCAAGAGAGTTTTTaGCTCCAAGACCTTGTGGATGTAACAAAAGTGCAGAGTGTGCAA | + |
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Preference number: 1 (lower is better) Translates to: TYYVSLSLHGDQESF*LQDLVDVTKVQSVQ Trigger: TTGCACACTCTGCACTTTTGTTACATCCACAAGGTCTTGGAGCCAAAAACTCTCTTGGTCACCATGTAGTGACAAAGACACATAGTAGGT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000031663.10 |
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| 3UTR GCA 90 bp | TGTGGATGTAACAAAAGTGCAGAGTGTGCAAAGGGAGGTTCACCATaGAAGGACTTAGGGTTTTGCTCAATCCACTGTTTACTCAAATTA | + |
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Preference number: 1 (lower is better) Translates to: CGCNKSAECAKGGSP*KDLGFCSIHCLLKL Trigger: TAATTTGAGTAAACAGTGGATTGAGCAAAACCCTAAGTCCTTGCATGGTGAACCTCCCTTTGCACACTCTGCACTTTTGTTACATCCACA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000031663.10 |
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| 3UTR TCA 90 bp | TGTTTCATTATTCAACACCTACTATGTGTCTTTGTCACTACATGGTaGCCAAGAGAGTTTTTGGCTCCAAGACCTTGTGGATGTAACAAA | + |
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Preference number: 1 (lower is better) Translates to: CFIIQHLLCVFVTTW*PREFLAPRPCGCNK Trigger: TTTGTTACATCCACAAGGTCTTGGAGCCAAAAACTCTCTTGGTCACCATGTAGTGACAAAGACACATAGTAGGTGTTGAATAATGAAACA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000031663.10 |
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| 3UTR GCA 90 bp | AAGGACTTAGGGTTTTGCTCAATCCACTGTTTACTCAAATTATCATaGACTGATCAAACAAATCTTAAAAGGGCAGAGTGGCATTGCGTT | + |
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Preference number: 1 (lower is better) Translates to: KDLGFCSIHCLLKLS*TDQTNLKRAEWHCV Trigger: AACGCAATGCCACTCTGCCCTTTTAAGATTTGTTTGATCAGTGCATGATAATTTGAGTAAACAGTGGATTGAGCAAAACCCTAAGTCCTT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000031663.10 |
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| 3UTR-3UTR CCA 90 bp | AAAAGTGCAGAGTGTGCAAAGGGAGGTTCACCATGCAAGGACTTAGGGTTTTGCTGTGACAGCCCTGGGTaGGAGCTGGAGTACTGGAAG | + |
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Preference number: 2 (lower is better) Translates to: KSAECAKGGSPCKDLGFCCDSPG*ELEYWK Trigger: CTTCCAGTACTCCAGCTCCCACCCAGGGCTGTCACA...GCAAAACCCTAAGTCCTTGCATGGTGAACCTCCCTTTGCACACTCTGCACTTTT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000031663.10 |
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| 3UTR-3UTR TCA 90 bp | CTCTGTGCTTACCAAGGGATGAACAACTTATCAATGTACTGTTTCATTATTCAAGCCTGGCTAAGTGTGTaGGGGTTGGAGTTCACTCGG | + |
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Preference number: 2 (lower is better) Translates to: LCAYQGMNNLSMYCFIIQAWLSV*GLEFTR Trigger: CCGAGTGAACTCCAACCCTCACACACTTAGCCAGGC...TTGAATAATGAAACAGTACATTGATAAGTTGTTCATCCCTTGGTAAGCACAGAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031663.10 |
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| 3UTR-3UTR CCA 90 bp | CTGTGCTTACCAAGGGATGAACAACTTATCAATGTACTGTTTCATTATTCAACAGACCAAGAGAGTTTTTaGCTCCAAGACCTTGTGGAT | + |
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Preference number: 2 (lower is better) Translates to: LCLPRDEQLINVLFHYSTDQESF*LQDLVD Trigger: ATCCACAAGGTCTTGGAGCCAAAAACTCTCTTGGTC...TGTTGAATAATGAAACAGTACATTGATAAGTTGTTCATCCCTTGGTAAGCACAG 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000031663.10 |
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| 3UTR CAA 90 bp | ACTTATCAATGTACTGTTTCATTATTCAACACCTACTATGTGTCTTaGTCACTACATGGTGACCAAGAGAGTTTTTGGCTCCAAGACCTT | + |
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Preference number: 2 (lower is better) Translates to: TYQCTVSLFNTYYVS*SLHGDQESFWLQDL Trigger: AAGGTCTTGGAGCCAAAAACTCTCTTGGTCACCATGTAGTGACAAAGACACATAGTAGGTGTTGAATAATGAAACAGTACATTGATAAGT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000031663.10 |
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| 3UTR-3UTR CAA 90 bp | TTACTGAAGAAGACTCTGTGCTTACCAAGGGATGAACAACTTATCAATGTACTGAAGGGCAGAGTGGCATaGCGTTTTGTTGTGACAGCC | + |
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Preference number: 3 (lower is better) Translates to: LLKKTLCLPRDEQLINVLKGRVA*RFVVTA Trigger: GGCTGTCACAACAAAACGCAATGCCACTCTGCCCTT...CAGTACATTGATAAGTTGTTCATCCCTTGGTAAGCACAGAGTCTTCTTCAGTAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031663.10 |
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| 3UTR GCA 72 bp | AACAAAAGTGCAGAGTGTGCAAAGGGAGGTTCACCATaGAAGGACTTAGGGTTTTGCTCAATCCACTGTTTA | + |
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Preference number: 3 (lower is better) Translates to: NKSAECAKGGSP*KDLGFCSIHCL Trigger: TAAACAGTGGATTGAGCAAAACCCTAAGTCCTTGCATGGTGAACCTCCCTTTGCACACTCTGCACTTTTGTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000031663.10 |
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| 3UTR CCA 72 bp | GTGTCTTTGTCACTACATGGTGACCAAGAGAGTTTTTaGCTCCAAGACCTTGTGGATGTAACAAAAGTGCAG | + |
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Preference number: 3 (lower is better) Translates to: VSLSLHGDQESF*LQDLVDVTKVQ Trigger: CTGCACTTTTGTTACATCCACAAGGTCTTGGAGCCAAAAACTCTCTTGGTCACCATGTAGTGACAAAGACAC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000031663.10 |
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| 3UTR TCA 72 bp | ATTCAACACCTACTATGTGTCTTTGTCACTACATGGTaGCCAAGAGAGTTTTTGGCTCCAAGACCTTGTGGA | + |
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Preference number: 3 (lower is better) Translates to: IQHLLCVFVTTW*PREFLAPRPCG Trigger: TCCACAAGGTCTTGGAGCCAAAAACTCTCTTGGTCACCATGTAGTGACAAAGACACATAGTAGGTGTTGAAT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000031663.10 |
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| 3UTR GCA 72 bp | GCAAAGGGAGGTTCACCATGCAAGGACTTAGGGTTTTaGTCAATCCACTGTTTACTCAAATTATCATGCACT | + |
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Preference number: 3 (lower is better) Translates to: AKGGSPCKDLGF*SIHCLLKLSCT Trigger: AGTGCATGATAATTTGAGTAAACAGTGGATTGAGCAAAACCCTAAGTCCTTGCATGGTGAACCTCCCTTTGC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031663.10 |
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| 3UTR GCA 72 bp | GGGTTTTGCTCAATCCACTGTTTACTCAAATTATCATaGACTGATCAAACAAATCTTAAAAGGGCAGAGTGG | + |
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Preference number: 3 (lower is better) Translates to: GFCSIHCLLKLS*TDQTNLKRAEW Trigger: CCACTCTGCCCTTTTAAGATTTGTTTGATCAGTGCATGATAATTTGAGTAAACAGTGGATTGAGCAAAACCC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000031663.10 |
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| 3UTR GCA 72 bp | AGAGATTGGCTGTCTTTATTACTGAAGAAGACTCTGTaGTTACCAAGGGATGAACAACTTATCAATGTACTG | + |
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Preference number: 3 (lower is better) Translates to: RDWLSLLLKKTL*LPRDEQLINVL Trigger: CAGTACATTGATAAGTTGTTCATCCCTTGGTAAGCACAGAGTCTTCTTCAGTAATAAAGACAGCCAATCTCT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031663.10 |
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| CDS-3UTR GCA 90 bp | AAAAGTGCAGAGTGTGCAAAGGGAGGTTCACCATGCAAGGACTTAGGGTTTTGCACACGACTTTGCCAGTaGCCTCCAAACCTGAGCCCC | + |
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Preference number: 4 (lower is better) Translates to: KSAECAKGGSPCKDLGFCTRLCQ*PPNLSP Trigger: GGGGCTCAGGTTTGGAGGGCACTGGCAAAGTCGTGT...GCAAAACCCTAAGTCCTTGCATGGTGAACCTCCCTTTGCACACTCTGCACTTTT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000031663.10 |
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| CDS-3UTR CCA 90 bp | GGGAGGTTCACCATGCAAGGACTTAGGGTTTTGCTCAATCCACTGTTTACTCAATCACAGGCTGTGCCTTaGAAGCCACCGGGGCAGATG | + |
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Preference number: 4 (lower is better) Translates to: GRFTMQGLRVLLNPLFTQSQAVP*KPPGQM Trigger: CATCTGCCCCGGTGGCTTCCAAGGCACAGCCTGTGA...TTGAGTAAACAGTGGATTGAGCAAAACCCTAAGTCCTTGCATGGTGAACCTCCC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000031663.10 |
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| CDS-3UTR TCA 90 bp | AAAAGTGCAGAGTGTGCAAAGGGAGGTTCACCATGCAAGGACTTAGGGTTTTGCCCAGGGGCAGGCTCTTaGCCCTCTGAAGGAATTCAT | + |
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Preference number: 4 (lower is better) Translates to: KSAECAKGGSPCKDLGFCPGAGS*PSEGIH Trigger: ATGAATTCCTTCAGAGGGTCAAGAGCCTGCCCCTGG...GCAAAACCCTAAGTCCTTGCATGGTGAACCTCCCTTTGCACACTCTGCACTTTT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000031663.10 |
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| CDS-3UTR GCA 90 bp | AGACCTTGTGGATGTAACAAAAGTGCAGAGTGTGCAAAGGGAGGTTCACCATGCGAGGAGACACGACTTTaGCAGTGCCCTCCAAACCTG | + |
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Preference number: 4 (lower is better) Translates to: RPCGCNKSAECAKGGSPCEETRL*QCPPNL Trigger: CAGGTTTGGAGGGCACTGGCAAAGTCGTGTCTCCTC...GCATGGTGAACCTCCCTTTGCACACTCTGCACTTTTGTTACATCCACAAGGTCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031663.10 |
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| CDS-3UTR GCA 90 bp | AGACCTTGTGGATGTAACAAAAGTGCAGAGTGTGCAAAGGGAGGTTCACCATGCCTGACAGGGGTCACATaGAGTCCAGGAAGACCAGGT | + |
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Preference number: 4 (lower is better) Translates to: RPCGCNKSAECAKGGSPCLTGVT*SPGRPG Trigger: ACCTGGTCTTCCTGGACTGCATGTGACCCCTGTCAG...GCATGGTGAACCTCCCTTTGCACACTCTGCACTTTTGTTACATCCACAAGGTCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000031663.10 |
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| CDS-3UTR CCA 90 bp | CAAGACCTTGTGGATGTAACAAAAGTGCAGAGTGTGCAAAGGGAGGTTCACCATCGGGCTTCCCACCTCTaGAACCAGGGAAATGGAGAC | + |
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Preference number: 4 (lower is better) Translates to: QDLVDVTKVQSVQREVHHRASHL*NQGNGD Trigger: GTCTCCATTTCCCTGGTTCCAGAGGTGGGAAGCCCG...ATGGTGAACCTCCCTTTGCACACTCTGCACTTTTGTTACATCCACAAGGTCTTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031663.10 |
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| CDS-3UTR GCA 90 bp | CAAGACCTTGTGGATGTAACAAAAGTGCAGAGTGTGCAAAGGGAGGTTCACCATGGCCAGCCTGTCAATTaGCCAGTACTGCTCCATCTC | + |
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Preference number: 4 (lower is better) Translates to: QDLVDVTKVQSVQREVHHGQPVN*PVLLHL Trigger: GAGATGGAGCAGTACTGGGCAATTGACAGGCTGGCC...ATGGTGAACCTCCCTTTGCACACTCTGCACTTTTGTTACATCCACAAGGTCTTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031663.10 |
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| CDS-3UTR CCA 90 bp | CCAAGACCTTGTGGATGTAACAAAAGTGCAGAGTGTGCAAAGGGAGGTTCACCACTGGAACCAGGGAAATaGAGACATCCCAGAGTAGCA | + |
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Preference number: 4 (lower is better) Translates to: PRPCGCNKSAECAKGGSPLEPGK*RHPRVA Trigger: TGCTACTCTGGGATGTCTCCATTTCCCTGGTTCCAG...TGGTGAACCTCCCTTTGCACACTCTGCACTTTTGTTACATCCACAAGGTCTTGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031663.10 |
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| CDS-3UTR TCA 90 bp | CAAGACCTTGTGGATGTAACAAAAGTGCAGAGTGTGCAAAGGGAGGTTCACCATTGTATGCCAAGGCAGTaGTATCCTCACTTGTCCCTC | + |
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Preference number: 4 (lower is better) Translates to: QDLVDVTKVQSVQREVHHCMPRQ*YPHLSL Trigger: GAGGGACAAGTGAGGATATCACTGCCTTGGCATACA...ATGGTGAACCTCCCTTTGCACACTCTGCACTTTTGTTACATCCACAAGGTCTTG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031663.10 |
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| CDS-3UTR TCA 90 bp | AACACCTACTATGTGTCTTTGTCACTACATGGTGACCAAGAGAGTTTTTGGCTCCACAGCGGCAGGAGCTaGCCTCACTCTGGAATTCTT | + |
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Preference number: 4 (lower is better) Translates to: NTYYVSLSLHGDQESFWLHSGRS*PHSGIL Trigger: AAGAATTCCAGAGTGAGGTCAGCTCCTGCCGCTGTG...GAGCCAAAAACTCTCTTGGTCACCATGTAGTGACAAAGACACATAGTAGGTGTT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000031663.10 |
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| CDS-3UTR GCA 90 bp | GGGAGGTTCACCATGCAAGGACTTAGGGTTTTGCTCAATCCACTGTTTACTCAACATTGCAAAGGAGTCTaGGATTCACACACCTCCCTG | + |
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Preference number: 4 (lower is better) Translates to: GRFTMQGLRVLLNPLFTQHCKGV*DSHTSL Trigger: CAGGGAGGTGTGTGAATCGCAGACTCCTTTGCAATG...TTGAGTAAACAGTGGATTGAGCAAAACCCTAAGTCCTTGCATGGTGAACCTCCC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031663.10 |
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| CDS-3UTR GCA 90 bp | AAAAGTGCAGAGTGTGCAAAGGGAGGTTCACCATGCAAGGACTTAGGGTTTTGCCTTCAGCTTGTAATGTaGCACTTCAAGGACAGAGCG | + |
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Preference number: 4 (lower is better) Translates to: KSAECAKGGSPCKDLGFCLQLVM*HFKDRA Trigger: CGCTCTGTCCTTGAAGTGGCACATTACAAGCTGAAG...GCAAAACCCTAAGTCCTTGCATGGTGAACCTCCCTTTGCACACTCTGCACTTTT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000031663.10 |
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| CDS-3UTR TCA 90 bp | ACTATGTGTCTTTGTCACTACATGGTGACCAAGAGAGTTTTTGGCTCCAAGACCCTGTACCTTTTCTTCTaGCAGGGGTCACATGCAGTC | + |
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Preference number: 4 (lower is better) Translates to: TMCLCHYMVTKRVFGSKTLYLFF*QGSHAV Trigger: GACTGCATGTGACCCCTGTCAGAAGAAAAGGTACAG...GGTCTTGGAGCCAAAAACTCTCTTGGTCACCATGTAGTGACAAAGACACATAGT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000031663.10 |
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| CDS-3UTR GCA 90 bp | AGACCTTGTGGATGTAACAAAAGTGCAGAGTGTGCAAAGGGAGGTTCACCATGCAGTCATTGTCCCCATTaGAAAGGAGTCTGCGATTCA | + |
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Preference number: 4 (lower is better) Translates to: RPCGCNKSAECAKGGSPCSHCPH*KGVCDS Trigger: TGAATCGCAGACTCCTTTGCAATGGGGACAATGACT...GCATGGTGAACCTCCCTTTGCACACTCTGCACTTTTGTTACATCCACAAGGTCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000031663.10 |
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| CDS-3UTR GCA 90 bp | CCAAGACCTTGTGGATGTAACAAAAGTGCAGAGTGTGCAAAGGGAGGTTCACCAAGTTCTGCTTCACTGTaGTGGAGTATGCAAAGTCTG | + |
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Preference number: 4 (lower is better) Translates to: PRPCGCNKSAECAKGGSPSSASL*WSMQSL Trigger: CAGACTTTGCATACTCCAGCACAGTGAAGCAGAACT...TGGTGAACCTCCCTTTGCACACTCTGCACTTTTGTTACATCCACAAGGTCTTGG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031663.10 |
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| CDS-3UTR GCA 90 bp | AAAAGTGCAGAGTGTGCAAAGGGAGGTTCACCATGCAAGGACTTAGGGTTTTGCGCTGGATTGTTGCACTaGCTGTGTCTTGTTTTGTGT | + |
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Preference number: 4 (lower is better) Translates to: KSAECAKGGSPCKDLGFCAGLLH*LCLVLC Trigger: ACACAAAACAAGACACAGGCAGTGCAACAATCCAGC...GCAAAACCCTAAGTCCTTGCATGGTGAACCTCCCTTTGCACACTCTGCACTTTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000031663.10 |
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| CDS-3UTR GCA 90 bp | CTGTGCTTACCAAGGGATGAACAACTTATCAATGTACTGTTTCATTATTCAACAGACCCGAACAGGGGCTaGCTCCTTTGTGAGGGGCTG | + |
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Preference number: 4 (lower is better) Translates to: LCLPRDEQLINVLFHYSTDPNRG*LLCEGL Trigger: CAGCCCCTCACAAAGGAGGCAGCCCCTGTTCGGGTC...TGTTGAATAATGAAACAGTACATTGATAAGTTGTTCATCCCTTGGTAAGCACAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000031663.10 |
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| CDS-3UTR GCA 90 bp | CTGTGCTTACCAAGGGATGAACAACTTATCAATGTACTGTTTCATTATTCAACAGGACTCCATTCCCTCTaGAAGGAGCACAGCGGCAGG | + |
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Preference number: 4 (lower is better) Translates to: LCLPRDEQLINVLFHYSTGLHSL*KEHSGR Trigger: CCTGCCGCTGTGCTCCTTGCAGAGGGAATGGAGTCC...TGTTGAATAATGAAACAGTACATTGATAAGTTGTTCATCCCTTGGTAAGCACAG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031663.10 |
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| CDS-3UTR GCA 90 bp | GACTTAGGGTTTTGCTCAATCCACTGTTTACTCAAATTATCATGCACTGATCAAGTGTCCTCCAGAGCATaGAGACCAGTCAGACCAGCA | + |
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Preference number: 4 (lower is better) Translates to: DLGFCSIHCLLKLSCTDQVSSRA*RPVRPA Trigger: TGCTGGTCTGACTGGTCTGCATGCTCTGGAGGACAC...TTGATCAGTGCATGATAATTTGAGTAAACAGTGGATTGAGCAAAACCCTAAGTC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031663.10 |
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| CDS-3UTR GCA 90 bp | TTACTGAAGAAGACTCTGTGCTTACCAAGGGATGAACAACTTATCAATGTACTGACACCTCCCTGTCTGTaGACACACAAAGCCTTCACA | + |
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Preference number: 4 (lower is better) Translates to: LLKKTLCLPRDEQLINVLTPPCL*THKAFT Trigger: TGTGAAGGCTTTGTGTGTGCACAGACAGGGAGGTGT...CAGTACATTGATAAGTTGTTCATCCCTTGGTAAGCACAGAGTCTTCTTCAGTAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031663.10 |
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| CDS-3UTR GCA 90 bp | TTACTGAAGAAGACTCTGTGCTTACCAAGGGATGAACAACTTATCAATGTACTGCACTGTGCTGGAGTATaGAAAGTCTGTGGCTGTCAC | + |
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Preference number: 4 (lower is better) Translates to: LLKKTLCLPRDEQLINVLHCAGV*KVCGCH Trigger: GTGACAGCCACAGACTTTGCATACTCCAGCACAGTG...CAGTACATTGATAAGTTGTTCATCCCTTGGTAAGCACAGAGTCTTCTTCAGTAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031663.10 |
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| CDS-3UTR CCA 90 bp | GGGAGGTTCACCATGCAAGGACTTAGGGTTTTGCTCAATCCACTGTTTACTCAACGAAGCGTTTGGTTCTaGTCACATAATTTTTGCCTT | + |
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Preference number: 4 (lower is better) Translates to: GRFTMQGLRVLLNPLFTQRSVWF*SHNFCL Trigger: AAGGCAAAAATTATGTGACCAGAACCAAACGCTTCG...TTGAGTAAACAGTGGATTGAGCAAAACCCTAAGTCCTTGCATGGTGAACCTCCC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000031663.10 |
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| 3UTR CAA 72 bp | TGCAAAGGGAGGTTCACCATGCAAGGACTTAGGGTTTaGCTCAATCCACTGTTTACTCAAATTATCATGCAC | + |
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Preference number: 4 (lower is better) Translates to: CKGRFTMQGLRV*LNPLFTQIIMH Trigger: GTGCATGATAATTTGAGTAAACAGTGGATTGAGCAAAACCCTAAGTCCTTGCATGGTGAACCTCCCTTTGCA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031663.10 |
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| CDS-3UTR TCA 90 bp | CTCTGTGCTTACCAAGGGATGAACAACTTATCAATGTACTGTTTCATTATTCAATGGAGGAACTTGCTTTaGGTGTGGGCGAAGCGTTTG | + |
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Preference number: 4 (lower is better) Translates to: LCAYQGMNNLSMYCFIIQWRNLL*VWAKRL Trigger: CAAACGCTTCGCCCACACTCAAAGCAAGTTCCTCCA...TTGAATAATGAAACAGTACATTGATAAGTTGTTCATCCCTTGGTAAGCACAGAG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031663.10 |
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| CDS-3UTR GCA 90 bp | AAAAGTGCAGAGTGTGCAAAGGGAGGTTCACCATGCAAGGACTTAGGGTTTTGCTGGTCACATAATTTTTaGCTTCGTTGCTTTCTACTT | + |
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Preference number: 4 (lower is better) Translates to: KSAECAKGGSPCKDLGFCWSHNF*LRCFLL Trigger: AAGTAGAAAGCAACGAAGGCAAAAATTATGTGACCA...GCAAAACCCTAAGTCCTTGCATGGTGAACCTCCCTTTGCACACTCTGCACTTTT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000031663.10 |
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| CDS-3UTR GCA 90 bp | TTACTGAAGAAGACTCTGTGCTTACCAAGGGATGAACAACTTATCAATGTACTGGTCACTGCATTTCTTTaGGGAAACGCCCACTTTGAC | + |
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Preference number: 4 (lower is better) Translates to: LLKKTLCLPRDEQLINVLVTAFL*GNAHFD Trigger: GTCAAAGTGGGCGTTTCCGCAAAGAAATGCAGTGAC...CAGTACATTGATAAGTTGTTCATCCCTTGGTAAGCACAGAGTCTTCTTCAGTAA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031663.10 |
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| CDS-3UTR CCA 90 bp | GACTTAGGGTTTTGCTCAATCCACTGTTTACTCAAATTATCATGCACTGATCAACCGGTGATCGAGAACTaGGCCCTCAAAAGTGTTTGT | + |
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Preference number: 4 (lower is better) Translates to: DLGFCSIHCLLKLSCTDQPVIEN*ALKSVC Trigger: ACAAACACTTTTGAGGGCCCAGTTCTCGATCACCGG...TTGATCAGTGCATGATAATTTGAGTAAACAGTGGATTGAGCAAAACCCTAAGTC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000031663.10 |
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| CDS-3UTR CCA 90 bp | TTACTGAAGAAGACTCTGTGCTTACCAAGGGATGAACAACTTATCAATGTACTGAAATCCTCCTACAGTTaGCTTCATCTGATTGGTCTC | + |
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Preference number: 4 (lower is better) Translates to: LLKKTLCLPRDEQLINVLKSSYS*LHLIGL Trigger: GAGACCAATCAGATGAAGCCAACTGTAGGAGGATTT...CAGTACATTGATAAGTTGTTCATCCCTTGGTAAGCACAGAGTCTTCTTCAGTAA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031663.10 |
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| CDS-3UTR CCA 90 bp | CTCTGTGCTTACCAAGGGATGAACAACTTATCAATGTACTGTTTCATTATTCAATCTGCTTCACTGTGCTaGAGTATGCAAAGTCTGTGG | + |
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Preference number: 4 (lower is better) Translates to: LCAYQGMNNLSMYCFIIQSASLC*SMQSLW Trigger: CCACAGACTTTGCATACTCCAGCACAGTGAAGCAGA...TTGAATAATGAAACAGTACATTGATAAGTTGTTCATCCCTTGGTAAGCACAGAG 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031663.10 |
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| CDS-3UTR CCA 90 bp | TTACTGAAGAAGACTCTGTGCTTACCAAGGGATGAACAACTTATCAATGTACTGGATCTTAATGATTGCTaGGTTGTACTTCACAGCATC | + |
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Preference number: 4 (lower is better) Translates to: LLKKTLCLPRDEQLINVLDLNDC*VVLHSI Trigger: GATGCTGTGAAGTACAACCCAGCAATCATTAAGATC...CAGTACATTGATAAGTTGTTCATCCCTTGGTAAGCACAGAGTCTTCTTCAGTAA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031663.10 |
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| CDS-3UTR GCA 90 bp | CTCTGTGCTTACCAAGGGATGAACAACTTATCAATGTACTGTTTCATTATTCAAAAGGCTCCCATTGACTaGCTTTGTCTCAAAGAAATC | + |
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Preference number: 4 (lower is better) Translates to: LCAYQGMNNLSMYCFIIQKAPID*LCLKEI Trigger: GATTTCTTTGAGACAAAGGCAGTCAATGGGAGCCTT...TTGAATAATGAAACAGTACATTGATAAGTTGTTCATCCCTTGGTAAGCACAGAG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031663.10 |
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| CDS-3UTR CCA 90 bp | CTGTGCTTACCAAGGGATGAACAACTTATCAATGTACTGTTTCATTATTCAACAATTCATATTCACATTTaGTCTGTGGGGTGTAGCTTT | + |
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Preference number: 4 (lower is better) Translates to: LCLPRDEQLINVLFHYSTIHIHI*SVGCSF Trigger: AAAGCTACACCCCACAGACCAAATGTGAATATGAAT...TGTTGAATAATGAAACAGTACATTGATAAGTTGTTCATCCCTTGGTAAGCACAG 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031663.10 |
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| CDS GCA 90 bp | GGCTGTCACAAGCTCATACAGGGGCTCAGCCTTGATCTTAATGATTaGTGGGTTGTACTTCACAGCATCGCCCCATGCCTCCATCAGTTC | + |
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Preference number: 5 (lower is better) Translates to: GCHKLIQGLSLDLND*WVVLHSIAPCLHQF Trigger: GAACTGATGGAGGCATGGGGCGATGCTGTGAAGTACAACCCAGCAATCATTAAGATCAAGGCTGAGCCCCTGTATGAGCTTGTGACAGCC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000031663.10 ENSMUST00000065072.7 |
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| CDS-3UTR CAA 90 bp | CCAAGACCTTGTGGATGTAACAAAAGTGCAGAGTGTGCAAAGGGAGGTTCACCATGGCCAGCCTGTCAATaGCCCAGTACTGCTCCATCT | + |
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Preference number: 5 (lower is better) Translates to: PRPCGCNKSAECAKGGSPWPACQ*PSTAPS Trigger: AGATGGAGCAGTACTGGGCAATTGACAGGCTGGCCA...TGGTGAACCTCCCTTTGCACACTCTGCACTTTTGTTACATCCACAAGGTCTTGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031663.10 |
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| CDS GCA 90 bp | GCTTGTAATGTGCCACTTCAAGGACAGAGCGCGCGTGGAGGAACTTaGTTTGAGTGTGGGCGAAGCGTTTGGTTCTGGTCACATAATTTT | + |
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Preference number: 5 (lower is better) Translates to: ACNVPLQGQSARGGT*FECGRSVWFWSHNF Trigger: AAAATTATGTGACCAGAACCAAACGCTTCGCCCACACTCAAAGCAAGTTCCTCCACGCGCGCTCTGTCCTTGAAGTGGCACATTACAAGC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031663.10 |
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| CDS-3UTR CAA 90 bp | CCAAGACCTTGTGGATGTAACAAAAGTGCAGAGTGTGCAAAGGGAGGTTCACCAGTGGAGGAACTTGCTTaGAGTGTGGGCGAAGCGTTT | + |
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Preference number: 5 (lower is better) Translates to: PRPCGCNKSAECAKGGSPVEELA*SVGEAF Trigger: AAACGCTTCGCCCACACTCAAAGCAAGTTCCTCCAC...TGGTGAACCTCCCTTTGCACACTCTGCACTTTTGTTACATCCACAAGGTCTTGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031663.10 |
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| CDS-3UTR CAA 90 bp | GGGAGGTTCACCATGCAAGGACTTAGGGTTTTGCTCAATCCACTGTTTACTCAAGGGGTTGGTAGCTCCTaGTATGCCAAGGCAGTGATA | + |
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Preference number: 5 (lower is better) Translates to: GRFTMQGLRVLLNPLFTQGVGSS*YAKAVI Trigger: TATCACTGCCTTGGCATACAAGGAGCTACCAACCCC...TTGAGTAAACAGTGGATTGAGCAAAACCCTAAGTCCTTGCATGGTGAACCTCCC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000031663.10 |
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| CDS GCA 90 bp | GAGCTGACCTCACTCTGGAATTCTTCTAGTGCCTTCTTTAAGTTCTaGTTCACTGTGCTGGAGTATGCAAAGTCTGTGGCTGTCACAAGC | + |
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Preference number: 5 (lower is better) Translates to: ELTSLWNSSSAFFKF*FTVLEYAKSVAVTS Trigger: GCTTGTGACAGCCACAGACTTTGCATACTCCAGCACAGTGAAGCAGAACTTAAAGAAGGCACTAGAAGAATTCCAGAGTGAGGTCAGCTC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031663.10 ENSMUST00000065072.7 |
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| CDS-3UTR CAA 90 bp | GACTTAGGGTTTTGCTCAATCCACTGTTTACTCAAATTATCATGCACTGATCAACTCACAGGCTGTGCCTaGGAAGCCACCGGGGCAGAT | + |
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Preference number: 5 (lower is better) Translates to: DLGFCSIHCLLKLSCTDQLTGCA*EATGAD Trigger: ATCTGCCCCGGTGGCTTCCAAGGCACAGCCTGTGAG...TTGATCAGTGCATGATAATTTGAGTAAACAGTGGATTGAGCAAAACCCTAAGTC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000031663.10 |
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| CDS CCA 90 bp | TCTGGAATTCTTCTAGTGCCTTCTTTAAGTTCTGCTTCACTGTGCTaGAGTATGCAAAGTCTGTGGCTGTCACAAGCTCATACAGGGGCT | + |
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Preference number: 5 (lower is better) Translates to: SGILLVPSLSSASLC*SMQSLWLSQAHTGA Trigger: AGCCCCTGTATGAGCTTGTGACAGCCACAGACTTTGCATACTCCAGCACAGTGAAGCAGAACTTAAAGAAGGCACTAGAAGAATTCCAGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000031663.10 ENSMUST00000065072.7 |
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| CDS-3UTR CAA 90 bp | AACACCTACTATGTGTCTTTGTCACTACATGGTGACCAAGAGAGTTTTTGGCTCTGCACTGCCTGTGTCTaGTTTTGTGTCCTCCAGAGC | + |
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Preference number: 5 (lower is better) Translates to: NTYYVSLSLHGDQESFWLCTACV*FCVLQS Trigger: GCTCTGGAGGACACAAAACAAGACACAGGCAGTGCA...GAGCCAAAAACTCTCTTGGTCACCATGTAGTGACAAAGACACATAGTAGGTGTT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000031663.10 |
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| CDS-3UTR CAA 90 bp | CAAGACCTTGTGGATGTAACAAAAGTGCAGAGTGTGCAAAGGGAGGTTCACCATCTGCTCCATCTCCCGTaGACAGTTTTTATAAATCCT | + |
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Preference number: 5 (lower is better) Translates to: QDLVDVTKVQSVQREVHHLLHLP*TVFINP Trigger: AGGATTTATAAAAACTGTCAACGGGAGATGGAGCAG...ATGGTGAACCTCCCTTTGCACACTCTGCACTTTTGTTACATCCACAAGGTCTTG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000031663.10 |
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| CDS-3UTR CAA 90 bp | AACACCTACTATGTGTCTTTGTCACTACATGGTGACCAAGAGAGTTTTTGGCTCTTAATGATTGCTGGGTaGTACTTCACAGCATCGCCC | + |
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Preference number: 5 (lower is better) Translates to: NTYYVSLSLHGDQESFWLLMIAG*YFTASP Trigger: GGGCGATGCTGTGAAGTACAACCCAGCAATCATTAA...GAGCCAAAAACTCTCTTGGTCACCATGTAGTGACAAAGACACATAGTAGGTGTT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000031663.10 |
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| CDS GCA 90 bp | AAAAGTGTTTGTGAACAGATTTATCCCACTGGCCAGCCTGTCAATTaGCCAGTACTGCTCCATCTCCCGTTGACAGTTTTTATAAATCCT | + |
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Preference number: 5 (lower is better) Translates to: KSVCEQIYPTGQPVN*PVLLHLPLTVFINP Trigger: AGGATTTATAAAAACTGTCAACGGGAGATGGAGCAGTACTGGGCAATTGACAGGCTGGCCAGTGGGATAAATCTGTTCACAAACACTTTT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000031663.10 ENSMUST00000065072.7 |
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| CDS-3UTR CAA 90 bp | GACTTAGGGTTTTGCTCAATCCACTGTTTACTCAAATTATCATGCACTGATCAATGGTCTCCACAGTCATaGTCCCCATTGCAAAGGAGT | + |
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Preference number: 5 (lower is better) Translates to: DLGFCSIHCLLKLSCTDQWSPQS*SPLQRS Trigger: ACTCCTTTGCAATGGGGACAATGACTGTGGAGACCA...TTGATCAGTGCATGATAATTTGAGTAAACAGTGGATTGAGCAAAACCCTAAGTC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000031663.10 |
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| CDS-3UTR CAA 90 bp | CTCTGTGCTTACCAAGGGATGAACAACTTATCAATGTACTGTTTCATTATTCAATACAGGGGCTCAGCCTaGATCTTAATGATTGCTGGG | + |
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Preference number: 5 (lower is better) Translates to: LCAYQGMNNLSMYCFIIQYRGSA*ILMIAG Trigger: CCCAGCAATCATTAAGATCAAGGCTGAGCCCCTGTA...TTGAATAATGAAACAGTACATTGATAAGTTGTTCATCCCTTGGTAAGCACAGAG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031663.10 |
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| CDS GCA 72 bp | CCTCACAGGCTGTGCCTTGGAAGCCACCGGGGCAGATaGACTCACAGCGGGATCCTTTCAGGACAGGGACTC | + |
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Preference number: 6 (lower is better) Translates to: PHRLCLGSHRGR*THSGILSGQGL Trigger: GAGTCCCTGTCCTGAAAGGATCCCGCTGTGAGTGCATCTGCCCCGGTGGCTTCCAAGGCACAGCCTGTGAGG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000031663.10 ENSMUST00000065072.7 |
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| CDS CAA 72 bp | GCTGGGGCTTCCGCCACACTCCGTACTGGTCTGCTCTaGACAAGGCTCCCATTGACTGCCTTTGTCTCAAAG | + |
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Preference number: 6 (lower is better) Translates to: AGASATLRTGLL*TRLPLTAFVSK Trigger: CTTTGAGACAAAGGCAGTCAATGGGAGCCTTGTCAAGAGCAGACCAGTACGGAGTGTGGCGGAAGCCCCAGC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000031663.10 ENSMUST00000065072.7 |
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| CDS CAA 90 bp | TCAATAGGTGCTGGGGCTTCCGCCACACTCCGTACTGGTCTGCTCTaGACAAGGCTCCCATTGACTGCCTTTGTCTCAAAGAAATCGGGC | + |
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Preference number: 6 (lower is better) Translates to: SIGAGASATLRTGLL*TRLPLTAFVSKKSG Trigger: GCCCGATTTCTTTGAGACAAAGGCAGTCAATGGGAGCCTTGTCAAGAGCAGACCAGTACGGAGTGTGGCGGAAGCCCCAGCACCTATTGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000031663.10 ENSMUST00000065072.7 |
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| CDS GCA 72 bp | GAGACATCCCAGAGTAGCACAGAGGAGACACGACTTTaGCAGTGCCCTCCAAACCTGAGCCCCTATCTTCAT | + |
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Preference number: 6 (lower is better) Translates to: ETSQSSTEETRL*QCPPNLSPYLH Trigger: ATGAAGATAGGGGCTCAGGTTTGGAGGGCACTGGCAAAGTCGTGTCTCCTCTGTGCTACTCTGGGATGTCTC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000031663.10 ENSMUST00000065072.7 |
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| CDS GCA 72 bp | GTGCCACTTCAAGGACAGAGCGCGCGTGGAGGAACTTaGTTTGCTGTGGGGTGTAGCTTTCTACGTTGTATG | + |
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Preference number: 6 (lower is better) Translates to: VPLQGQSARGGT*FAVGCSFLRCM Trigger: CATACAACGTAGAAAGCTACACCCCACAGCAAAGCAAGTTCCTCCACGCGCGCTCTGTCCTTGAAGTGGCAC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000065072.7 |
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| CDS CCA 72 bp | AAGAAATCGGGCTTCCCACCTCTGGAACCAGGGAAATaGAGACATCCCAGAGTAGCACAGAGGAGACACGAC | + |
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Preference number: 6 (lower is better) Translates to: KKSGFPPLEPGK*RHPRVAQRRHD Trigger: GTCGTGTCTCCTCTGTGCTACTCTGGGATGTCTCCATTTCCCTGGTTCCAGAGGTGGGAAGCCCGATTTCTT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031663.10 ENSMUST00000065072.7 |
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| CDS CAA 72 bp | CCCCATGCCTCCATCAGTTCAGGGGTTGGTAGCTCCTaGTATGCCAAGGCAGTGATATCCTCACTTGTCCCT | + |
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Preference number: 6 (lower is better) Translates to: PHASISSGVGSS*YAKAVISSLVP Trigger: AGGGACAAGTGAGGATATCACTGCCTTGGCATACAAGGAGCTACCAACCCCTGAACTGATGGAGGCATGGGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000031663.10 ENSMUST00000065072.7 |
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| CDS CAA 72 bp | CACTTCAAGGACAGAGCGCGCGTGGAGGAACTTGCTTaGCTGTGGGGTGTAGCTTTCTACGTTGTATGGCTT | + |
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Preference number: 6 (lower is better) Translates to: HFKDRARVEELA*LWGVAFYVVWL Trigger: AAGCCATACAACGTAGAAAGCTACACCCCACAGCAAAGCAAGTTCCTCCACGCGCGCTCTGTCCTTGAAGTG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000065072.7 |
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| CDS GCA 72 bp | GCAAAGGAGTCTGCGATTCACACACCTCCCTGTCTGTaGACACACAAAGCCTTCACATCGTACTTGACTCCT | + |
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Preference number: 6 (lower is better) Translates to: AKESAIHTPPCL*THKAFTSYLTP Trigger: AGGAGTCAAGTACGATGTGAAGGCTTTGTGTGTGCACAGACAGGGAGGTGTGTGAATCGCAGACTCCTTTGC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031663.10 ENSMUST00000065072.7 |
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| CDS CCA 72 bp | CTCATACAGGGGCTCAGCCTTGATCTTAATGATTGCTaGGTTGTACTTCACAGCATCGCCCCATGCCTCCAT | + |
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Preference number: 6 (lower is better) Translates to: LIQGLSLDLNDC*VVLHSIAPCLH Trigger: ATGGAGGCATGGGGCGATGCTGTGAAGTACAACCCAGCAATCATTAAGATCAAGGCTGAGCCCCTGTATGAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000031663.10 ENSMUST00000065072.7 |
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| CDS CAA 72 bp | TACAGGGGCTCAGCCTTGATCTTAATGATTGCTGGGTaGTACTTCACAGCATCGCCCCATGCCTCCATCAGT | + |
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Preference number: 6 (lower is better) Translates to: YRGSALILMIAG*YFTASPHASIS Trigger: ACTGATGGAGGCATGGGGCGATGCTGTGAAGTACAACCCAGCAATCATTAAGATCAAGGCTGAGCCCCTGTA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000031663.10 ENSMUST00000065072.7 |
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| CDS CAA 90 bp | GTAATGTGCCACTTCAAGGACAGAGCGCGCGTGGAGGAACTTGCTTaGCTGTGGGGTGTAGCTTTCTACGTTGTATGGCTTCCTAAAGTT | + |
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Preference number: 6 (lower is better) Translates to: VMCHFKDRARVEELA*LWGVAFYVVWLPKV Trigger: AACTTTAGGAAGCCATACAACGTAGAAAGCTACACCCCACAGCAAAGCAAGTTCCTCCACGCGCGCTCTGTCCTTGAAGTGGCACATTAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000065072.7 |
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| CDS TCA 72 bp | ACCGGTGATCGAGAACTGGGCCCTCAAAAGTGTTTGTaGACAGATTTATCCCACTGGCCAGCCTGTCAATTG | + |
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Preference number: 6 (lower is better) Translates to: TGDRELGPQKCL*TDLSHWPACQL Trigger: CAATTGACAGGCTGGCCAGTGGGATAAATCTGTTCACAAACACTTTTGAGGGCCCAGTTCTCGATCACCGGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000031663.10 ENSMUST00000065072.7 |
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| CDS TCA 72 bp | GTTCAGGGGTTGGTAGCTCCTTGTATGCCAAGGCAGTaGTATCCTCACTTGTCCCTCCTCTCACAAGAACTA | + |
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Preference number: 6 (lower is better) Translates to: VQGLVAPCMPRQ*YPHLSLLSQEL Trigger: TAGTTCTTGTGAGAGGAGGGACAAGTGAGGATATCACTGCCTTGGCATACAAGGAGCTACCAACCCCTGAAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000031663.10 ENSMUST00000065072.7 |
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| CDS CCA 72 bp | CTTGCTTTGCTGTGGGGTGTAGCTTTCTACGTTGTATaGCTTCCTAAAGTTGGTGTCCAGGATGTAGTGGGG | + |
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Preference number: 6 (lower is better) Translates to: LALLWGVAFYVV*LPKVGVQDVVG Trigger: CCCCACTACATCCTGGACACCAACTTTAGGAAGCCATACAACGTAGAAAGCTACACCCCACAGCAAAGCAAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000065072.7 |
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| CDS CCA 72 bp | GGAGCATCCACCAGCATAATACCGGTGATCGAGAACTaGGCCCTCAAAAGTGTTTGTGAACAGATTTATCCC | + |
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Preference number: 6 (lower is better) Translates to: GASTSIIPVIEN*ALKSVCEQIYP Trigger: GGGATAAATCTGTTCACAAACACTTTTGAGGGCCCAGTTCTCGATCACCGGTATTATGCTGGTGGATGCTCC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000031663.10 ENSMUST00000065072.7 |
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| CDS CCA 72 bp | ACATTTGGTCTGTGGGGTGTAGCTTTCTACGTTGTATaGCTTCCTAAAGTTGGTGTCCAGGATGTAGTGGGG | + |
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Preference number: 6 (lower is better) Translates to: TFGLWGVAFYVV*LPKVGVQDVVG Trigger: CCCCACTACATCCTGGACACCAACTTTAGGAAGCCATACAACGTAGAAAGCTACACCCCACAGACCAAATGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031663.10 |
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| CDS CAA 72 bp | AGCACAGGCAGTAACATGGCTAAGAGTGTAGTCTCCTaGCTCCATGGCGTCTTTGTTCATGATAAGCGTGTA | + |
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Preference number: 6 (lower is better) Translates to: STGSNMAKSVVS*LHGVFVHDKRV Trigger: TACACGCTTATCATGAACAAAGACGCCATGGAGCAAGGAGACTACACTCTTAGCCATGTTACTGCCTGTGCT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031663.10 ENSMUST00000065072.7 |
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| CDS CAA 90 bp | AGAACTACCAAGTCTTCTACCATGGTGCTCCTCTTATTTCTTTCGTaGATTTCTTTCATAATGTCACTGCATTTCTTTGCGGAAACGCCC | + |
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Preference number: 6 (lower is better) Translates to: RTTKSSTMVLLLFLS*ISFIMSLHFFAETP Trigger: GGGCGTTTCCGCAAAGAAATGCAGTGACATTATGAAAGAAATCAACGAAAGAAATAAGAGGAGCACCATGGTAGAAGACTTGGTAGTTCT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031663.10 ENSMUST00000065072.7 |
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