Pregenerated sensors for C4BP (Mus musculus)
Ensembl gene IDs: ENSMUSG00000026405Ensembl transcript IDs: ENSMUST00000027657.14, ENSMUST00000137276.3, ENSMUST00000171642.8
Found 83 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | GGAAGCACTCAGACACGAATGAGGAAGGCTCAGAGGGAGCAAGGATaGTGCCTACAAAGAGAACACAGATGCAAACGACAGTGGTACAGG | + |
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Preference number: 1 (lower is better) Translates to: GSTQTRMRKAQREQG*CLQREHRCKRQWYR Trigger: CCTGTACCACTGTCGTTTGCATCTGTGTTCTCTTTGTAGGCACCATCCTTGCTCCCTCTGAGCCTTCCTCATTCGTGTCTGAGTGCTTCC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027657.14 |
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| 3UTR GCA 90 bp | AGCACTCAGACACGAATGAGGAAGGCTCAGAGGGAGCAAGGATGGTaGCTACAAAGAGAACACAGATGCAAACGACAGTGGTACAGGCTT | + |
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Preference number: 1 (lower is better) Translates to: STQTRMRKAQREQGW*LQREHRCKRQWYRL Trigger: AAGCCTGTACCACTGTCGTTTGCATCTGTGTTCTCTTTGTAGGCACCATCCTTGCTCCCTCTGAGCCTTCCTCATTCGTGTCTGAGTGCT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027657.14 |
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| 3UTR TCA 90 bp | TTAAACGTCCTTCTTTCAGGTTGGAGTAAGGTCCAAGAGACTACATaGCTTCCCATCATGATGGCTTGCACATCGCCACAGTTAACAGGA | + |
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Preference number: 1 (lower is better) Translates to: LNVLLSGWSKVQETT*LPIMMACTSPQLTG Trigger: TCCTGTTAACTGTGGCGATGTGCAAGCCATCATGATGGGAAGTCATGTAGTCTCTTGGACCTTACTCCAACCTGAAAGAAGGACGTTTAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027657.14 |
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| 3UTR TCA 90 bp | GGGAGTGTAGCTCCAGCAATGTTAATTCAATATTTAGGGAAATGCTaGTCAAATCAGAGAGAAACTTTGAGAATTCACAGATGGCTGTTG | + |
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Preference number: 1 (lower is better) Translates to: GSVAPAMLIQYLGKC*SNQRETLRIHRWLL Trigger: CAACAGCCATCTGTGAATTCTCAAAGTTTCTCTCTGATTTGATCAGCATTTCCCTAAATATTGAATTAACATTGCTGGAGCTACACTCCC 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027657.14 |
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| 3UTR-3UTR TCA 90 bp | ACAGATGCAAACGACAGTGGTACAGGCTTTCTCTCTGGGTATCGGGAGTGTAGCGGTGATGTGCACGTGTaGGACAGTGAGAGACTGAGC | + |
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Preference number: 2 (lower is better) Translates to: TDANDSGTGFLSGYRECSGDVHV*DSERLS Trigger: GCTCAGTCTCTCACTGTCTCACACGTGCACATCACC...GCTACACTCCCGATACCCAGAGAGAAAGCCTGTACCACTGTCGTTTGCATCTGT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027657.14 |
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| 3UTR-3UTR TCA 90 bp | GAAGTGACAATGGGAAGCACTCAGACACGAATGAGGAAGGCTCAGAGGGAGCAAGTGAGTGAGCCAAAGTaGATTGTGCACCTCAGATTT | + |
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Preference number: 2 (lower is better) Translates to: EVTMGSTQTRMRKAQREQVSEPK*IVHLRF Trigger: AAATCTGAGGTGCACAATTCACTTTGGCTCACTCAC...TTGCTCCCTCTGAGCCTTCCTCATTCGTGTCTGAGTGCTTCCCATTGTCACTTC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027657.14 |
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| 3UTR-3UTR CCA 90 bp | GAAGTGACAATGGGAAGCACTCAGACACGAATGAGGAAGGCTCAGAGGGAGCAAGTCCTTCTTTCAGGTTaGAGTAAGGTCCAAGAGACT | + |
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Preference number: 2 (lower is better) Translates to: EVTMGSTQTRMRKAQREQVLLSG*SKVQET Trigger: AGTCTCTTGGACCTTACTCCAACCTGAAAGAAGGAC...TTGCTCCCTCTGAGCCTTCCTCATTCGTGTCTGAGTGCTTCCCATTGTCACTTC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027657.14 |
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| 3UTR-3UTR TCA 90 bp | GAAGTGACAATGGGAAGCACTCAGACACGAATGAGGAAGGCTCAGAGGGAGCAACAATCTGTTTGGAACTaGAGTCAGAAAGCCAATGAG | + |
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Preference number: 2 (lower is better) Translates to: EVTMGSTQTRMRKAQREQQSVWN*SQKANE Trigger: CTCATTGGCTTTCTGACTTCAGTTCCAAACAGATTG...TTGCTCCCTCTGAGCCTTCCTCATTCGTGTCTGAGTGCTTCCCATTGTCACTTC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027657.14 |
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| 3UTR-3UTR TCA 90 bp | ACAATGGGAAGCACTCAGACACGAATGAGGAAGGCTCAGAGGGAGCAAGGATGGATCAGAGAGAAACTTTaGGAATTCACAGATGGCTGT | + |
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Preference number: 2 (lower is better) Translates to: TMGSTQTRMRKAQREQGWIREKL*EFTDGC Trigger: ACAGCCATCTGTGAATTCTCAAAGTTTCTCTCTGAT...CCATCCTTGCTCCCTCTGAGCCTTCCTCATTCGTGTCTGAGTGCTTCCCATTGT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027657.14 |
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| 3UTR GCA 72 bp | ACACGAATGAGGAAGGCTCAGAGGGAGCAAGGATGGTaGCTACAAAGAGAACACAGATGCAAACGACAGTGG | + |
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Preference number: 3 (lower is better) Translates to: TRMRKAQREQGW*LQREHRCKRQW Trigger: CCACTGTCGTTTGCATCTGTGTTCTCTTTGTAGGCACCATCCTTGCTCCCTCTGAGCCTTCCTCATTCGTGT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027657.14 |
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| 3UTR CCA 72 bp | CAGACACGAATGAGGAAGGCTCAGAGGGAGCAAGGATaGTGCCTACAAAGAGAACACAGATGCAAACGACAG | + |
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Preference number: 3 (lower is better) Translates to: QTRMRKAQREQG*CLQREHRCKRQ Trigger: CTGTCGTTTGCATCTGTGTTCTCTTTGTAGGCACCATCCTTGCTCCCTCTGAGCCTTCCTCATTCGTGTCTG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027657.14 |
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| 3UTR GCA 72 bp | AGGGAGCAAGGATGGTGCCTACAAAGAGAACACAGATaGAAACGACAGTGGTACAGGCTTTCTCTCTGGGTA | + |
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Preference number: 3 (lower is better) Translates to: REQGWCLQREHR*KRQWYRLSLWV Trigger: TACCCAGAGAGAAAGCCTGTACCACTGTCGTTTGCATCTGTGTTCTCTTTGTAGGCACCATCCTTGCTCCCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027657.14 |
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| 3UTR-3UTR CAA 90 bp | AACACAGATGCAAACGACAGTGGTACAGGCTTTCTCTCTGGGTATCGGGAGTGTCTGCAGGCAATCTGTTaGGAACTGAAGTCAGAAAGC | + |
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Preference number: 3 (lower is better) Translates to: NTDANDSGTGFLSGYRECLQAIC*ELKSES Trigger: GCTTTCTGACTTCAGTTCCAAACAGATTGCCTGCAG...ACACTCCCGATACCCAGAGAGAAAGCCTGTACCACTGTCGTTTGCATCTGTGTT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027657.14 |
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| 3UTR TCA 72 bp | CTTCTTTCAGGTTGGAGTAAGGTCCAAGAGACTACATaGCTTCCCATCATGATGGCTTGCACATCGCCACAG | + |
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Preference number: 3 (lower is better) Translates to: LLSGWSKVQETT*LPIMMACTSPQ Trigger: CTGTGGCGATGTGCAAGCCATCATGATGGGAAGTCATGTAGTCTCTTGGACCTTACTCCAACCTGAAAGAAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027657.14 |
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| 3UTR TCA 72 bp | ACAAAGGTTGGTAACTGCAGGCAATCTGTTTGGAACTaGAGTCAGAAAGCCAATGAGACGCTACTTCCTCCT | + |
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Preference number: 3 (lower is better) Translates to: TKVGNCRQSVWN*SQKANETLLPP Trigger: AGGAGGAAGTAGCGTCTCATTGGCTTTCTGACTTCAGTTCCAAACAGATTGCCTGCAGTTACCAACCTTTGT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027657.14 |
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| 3UTR TCA 72 bp | CAGGCAATCTGTTTGGAACTGAAGTCAGAAAGCCAATaGGACGCTACTTCCTCCTTAAGAGAACATACAGTC | + |
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Preference number: 3 (lower is better) Translates to: QAICLELKSESQ*DATSSLREHTV Trigger: GACTGTATGTTCTCTTAAGGAGGAAGTAGCGTCTCATTGGCTTTCTGACTTCAGTTCCAAACAGATTGCCTG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027657.14 |
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| 3UTR TCA 72 bp | GAGAGACTGAGCAGTCTAGGGACACAACAGTGTGAGTaGGCCAAAGTGAATTGTGCACCTCAGATTTTTAAA | + |
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Preference number: 3 (lower is better) Translates to: ERLSSLGTQQCE*AKVNCAPQIFK Trigger: TTTAAAAATCTGAGGTGCACAATTCACTTTGGCTCACTCACACTGTTGTGTCCCTAGACTGCTCAGTCTCTC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000027657.14 |
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| 3UTR TCA 72 bp | AATTTCATTAGTGTAAAAACAATTCAGGGTTCCATGTaGAGTGACAATGGGAAGCACTCAGACACGAATGAG | + |
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Preference number: 3 (lower is better) Translates to: NFISVKTIQGSM*SDNGKHSDTNE Trigger: CTCATTCGTGTCTGAGTGCTTCCCATTGTCACTTCACATGGAACCCTGAATTGTTTTTACACTAATGAAATT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000027657.14 |
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| CDS-3UTR TCA 90 bp | GGAAGCACTCAGACACGAATGAGGAAGGCTCAGAGGGAGCAAGGATGGTGCCTATGTGCTTCCCATTGCTaGTGTCTGGAGGGGGCCCAC | + |
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Preference number: 4 (lower is better) Translates to: GSTQTRMRKAQREQGWCLCASHC*CLEGAH Trigger: GTGGGCCCCCTCCAGACATCAGCAATGGGAAGCACA...TAGGCACCATCCTTGCTCCCTCTGAGCCTTCCTCATTCGTGTCTGAGTGCTTCC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000027657.14 |
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| CDS-3UTR GCA 90 bp | ACAATGGGAAGCACTCAGACACGAATGAGGAAGGCTCAGAGGGAGCAAGGATGGTCTTCAGAGGCCTCCTaGTCACATCTGGGCACCTCT | + |
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Preference number: 4 (lower is better) Translates to: TMGSTQTRMRKAQREQGWSSEAS*SHLGTS Trigger: AGAGGTGCCCAGATGTGAGCAGGAGGCCTCTGAAGA...CCATCCTTGCTCCCTCTGAGCCTTCCTCATTCGTGTCTGAGTGCTTCCCATTGT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027657.14 |
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| CDS-3UTR CCA 90 bp | GGAAGCACTCAGACACGAATGAGGAAGGCTCAGAGGGAGCAAGGATGGTGCCTAACATCTGGGCACCTCTaGATACCAGGTTCCACTCTC | + |
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Preference number: 4 (lower is better) Translates to: GSTQTRMRKAQREQGWCLTSGHL*IPGSTL Trigger: GAGAGTGGAACCTGGTATCCAGAGGTGCCCAGATGT...TAGGCACCATCCTTGCTCCCTCTGAGCCTTCCTCATTCGTGTCTGAGTGCTTCC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027657.14 |
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| CDS-3UTR CCA 90 bp | ACAGTGGTACAGGCTTTCTCTCTGGGTATCGGGAGTGTAGCTCCAGCAATGTTACATGTGCAGCTCTTGTaGGGAGCAGGGTCTGCTGCT | + |
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Preference number: 4 (lower is better) Translates to: TVVQAFSLGIGSVAPAMLHVQLL*GAGSAA Trigger: AGCAGCAGACCCTGCTCCCCACAAGAGCTGCACATG...TAACATTGCTGGAGCTACACTCCCGATACCCAGAGAGAAAGCCTGTACCACTGT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027657.14 |
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| CDS-3UTR TCA 90 bp | ACAATGGGAAGCACTCAGACACGAATGAGGAAGGCTCAGAGGGAGCAAGGATGGCACTCTCTGAACAACTaGTGCTTTGGGAACCCAGCA | + |
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Preference number: 4 (lower is better) Translates to: TMGSTQTRMRKAQREQGWHSLNN*CFGNPA Trigger: TGCTGGGTTCCCAAAGCATCAGTTGTTCAGAGAGTG...CCATCCTTGCTCCCTCTGAGCCTTCCTCATTCGTGTCTGAGTGCTTCCCATTGT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027657.14 |
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| CDS-3UTR TCA 90 bp | ACAGTGGTACAGGCTTTCTCTCTGGGTATCGGGAGTGTAGCTCCAGCAATGTTAACAGGTAGGAGGGCTTaGGCTCCAAACAGGTACTGT | + |
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Preference number: 4 (lower is better) Translates to: TVVQAFSLGIGSVAPAMLTGRRA*APNRYC Trigger: ACAGTACCTGTTTGGAGCTCAAGCCCTCCTACCTGT...TAACATTGCTGGAGCTACACTCCCGATACCCAGAGAGAAAGCCTGTACCACTGT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027657.14 |
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| 3UTR CAA 72 bp | GGTCCAAGAGACTACATGACTTCCCATCATGATGGCTaGCACATCGCCACAGTTAACAGGAGGCTGGGTATC | + |
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Preference number: 4 (lower is better) Translates to: GPRDYMTSHHDG*HIATVNRRLGI Trigger: GATACCCAGCCTCCTGTTAACTGTGGCGATGTGCAAGCCATCATGATGGGAAGTCATGTAGTCTCTTGGACC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027657.14 |
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| CDS-3UTR TCA 90 bp | ACAGTGGTACAGGCTTTCTCTCTGGGTATCGGGAGTGTAGCTCCAGCAATGTTAGCATCTCTGTTTCTATaGAGCCTCCCATGTGCAGCT | + |
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Preference number: 4 (lower is better) Translates to: TVVQAFSLGIGSVAPAMLASLFL*SLPCAA Trigger: AGCTGCACATGGGAGGCTTCATAGAAACAGAGATGC...TAACATTGCTGGAGCTACACTCCCGATACCCAGAGAGAAAGCCTGTACCACTGT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027657.14 |
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| CDS-3UTR TCA 90 bp | ACAATGGGAAGCACTCAGACACGAATGAGGAAGGCTCAGAGGGAGCAAGGATGGTGTCCCTTTCCACTTTaGAAAGCTGCAGGAGATGAT | + |
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Preference number: 4 (lower is better) Translates to: TMGSTQTRMRKAQREQGWCPFPL*KAAGDD Trigger: ATCATCTCCTGCAGCTTTTCAAAGTGGAAAGGGACA...CCATCCTTGCTCCCTCTGAGCCTTCCTCATTCGTGTCTGAGTGCTTCCCATTGT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027657.14 |
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| CDS-3UTR TCA 90 bp | AACACAGATGCAAACGACAGTGGTACAGGCTTTCTCTCTGGGTATCGGGAGTGTCCAGGTTCCACTCTCTaGACAACTGATGCTTTGGGA | + |
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Preference number: 4 (lower is better) Translates to: NTDANDSGTGFLSGYRECPGSTL*TTDALG Trigger: TCCCAAAGCATCAGTTGTTCAGAGAGTGGAACCTGG...ACACTCCCGATACCCAGAGAGAAAGCCTGTACCACTGTCGTTTGCATCTGTGTT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027657.14 |
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| CDS-3UTR CCA 90 bp | ACAGATGCAAACGACAGTGGTACAGGCTTTCTCTCTGGGTATCGGGAGTGTAGCGGGTATAGCAGGTGGTaGACCACATTTGCCAAATAC | + |
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Preference number: 4 (lower is better) Translates to: TDANDSGTGFLSGYRECSGYSRW*TTFAKY Trigger: GTATTTGGCAAATGTGGTCCACCACCTGCTATACCC...GCTACACTCCCGATACCCAGAGAGAAAGCCTGTACCACTGTCGTTTGCATCTGT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027657.14 |
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| CDS-3UTR TCA 90 bp | GGAAGCACTCAGACACGAATGAGGAAGGCTCAGAGGGAGCAAGGATGGTGCCTAGCTGAATTCTATCTGTaGTCCAAAAGTGATAGTCTC | + |
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Preference number: 4 (lower is better) Translates to: GSTQTRMRKAQREQGWCLAEFYL*SKSDSL Trigger: GAGACTATCACTTTTGGATCACAGATAGAATTCAGC...TAGGCACCATCCTTGCTCCCTCTGAGCCTTCCTCATTCGTGTCTGAGTGCTTCC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027657.14 |
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| CDS-3UTR GCA 90 bp | ACAGATGCAAACGACAGTGGTACAGGCTTTCTCTCTGGGTATCGGGAGTGTAGCGTGGTGGACCACATTTaGCAAATACAGCAACCCAAA | + |
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Preference number: 4 (lower is better) Translates to: TDANDSGTGFLSGYRECSVVDHI*QIQQPK Trigger: TTTGGGTTGCTGTATTTGGCAAATGTGGTCCACCAC...GCTACACTCCCGATACCCAGAGAGAAAGCCTGTACCACTGTCGTTTGCATCTGT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027657.14 |
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| CDS-3UTR GCA 90 bp | ACAGATGCAAACGACAGTGGTACAGGCTTTCTCTCTGGGTATCGGGAGTGTAGCATTCTCCCGAAGGTTTaGAGTAAACCATCATCCTTG | + |
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Preference number: 4 (lower is better) Translates to: TDANDSGTGFLSGYRECSILPKV*SKPSSL Trigger: CAAGGATGATGGTTTACTGCAAACCTTCGGGAGAAT...GCTACACTCCCGATACCCAGAGAGAAAGCCTGTACCACTGTCGTTTGCATCTGT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027657.14 |
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| CDS-3UTR CCA 90 bp | GAGAGAAACTTTGAGAATTCACAGATGGCTGTTGTAGTCTTCATGGTCATCAGTCCTCCTGCTCACATCTaGGCACCTCTGGATACCAGG | + |
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Preference number: 4 (lower is better) Translates to: ERNFENSQMAVVVFMVISPPAHI*APLDTR Trigger: CCTGGTATCCAGAGGTGCCCAGATGTGAGCAGGAGG...ACTGATGACCATGAAGACTACAACAGCCATCTGTGAATTCTCAAAGTTTCTCTC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027657.14 |
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| CDS-3UTR CCA 90 bp | GAAGTGACAATGGGAAGCACTCAGACACGAATGAGGAAGGCTCAGAGGGAGCAATACAATTACACATTCTaGGAAAGGATTACTCCAGGC | + |
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Preference number: 4 (lower is better) Translates to: EVTMGSTQTRMRKAQREQYNYTF*ERITPG Trigger: GCCTGGAGTAATCCTTTCCCAGAATGTGTAATTGTA...TTGCTCCCTCTGAGCCTTCCTCATTCGTGTCTGAGTGCTTCCCATTGTCACTTC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027657.14 |
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| CDS-3UTR GCA 90 bp | AACATTGGTGCCAGCATTACAAAGGTTGGTAACTGCAGGCAATCTGTTTGGAACGCTGCAGGAGATGATTaGCTTTCCAACCAGTCTGTA | + |
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Preference number: 4 (lower is better) Translates to: NIGASITKVGNCRQSVWNAAGDD*LSNQSV Trigger: TACAGACTGGTTGGAAAGGCAATCATCTCCTGCAGC...GTTCCAAACAGATTGCCTGCAGTTACCAACCTTTGTAATGCTGGCACCAATGTT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027657.14 |
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| CDS-3UTR CCA 90 bp | AACATTGGTGCCAGCATTACAAAGGTTGGTAACTGCAGGCAATCTGTTTGGAACGAACAACTGATGCTTTaGGAACCCAGCATGGCAAAG | + |
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Preference number: 4 (lower is better) Translates to: NIGASITKVGNCRQSVWNEQLML*EPSMAK Trigger: CTTTGCCATGCTGGGTTCCCAAAGCATCAGTTGTTC...GTTCCAAACAGATTGCCTGCAGTTACCAACCTTTGTAATGCTGGCACCAATGTT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027657.14 |
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| CDS-3UTR CCA 90 bp | AACATTGGTGCCAGCATTACAAAGGTTGGTAACTGCAGGCAATCTGTTTGGAACGCAGTAAAGGTCATTTaGAACAAAGTTGGGCCAGAG | + |
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Preference number: 4 (lower is better) Translates to: NIGASITKVGNCRQSVWNAVKVI*NKVGPE Trigger: CTCTGGCCCAACTTTGTTCCAAATGACCTTTACTGC...GTTCCAAACAGATTGCCTGCAGTTACCAACCTTTGTAATGCTGGCACCAATGTT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027657.14 |
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| CDS-3UTR TCA 90 bp | GAGAGAAACTTTGAGAATTCACAGATGGCTGTTGTAGTCTTCATGGTCATCAGTAAAAGCTGCAGGAGATaGTTGCCTTTCCAACCAGTC | + |
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Preference number: 4 (lower is better) Translates to: ERNFENSQMAVVVFMVISKSCRR*LPFQPV Trigger: GACTGGTTGGAAAGGCAATCATCTCCTGCAGCTTTT...ACTGATGACCATGAAGACTACAACAGCCATCTGTGAATTCTCAAAGTTTCTCTC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027657.14 |
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| CDS-3UTR GCA 90 bp | AACATTGGTGCCAGCATTACAAAGGTTGGTAACTGCAGGCAATCTGTTTGGAACGAATTTGGCACATACTaGATGGTCTTGTTGCCTGTA | + |
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Preference number: 4 (lower is better) Translates to: NIGASITKVGNCRQSVWNEFGTY*MVLLPV Trigger: TACAGGCAACAAGACCATGCAGTATGTGCCAAATTC...GTTCCAAACAGATTGCCTGCAGTTACCAACCTTTGTAATGCTGGCACCAATGTT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027657.14 |
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| CDS-3UTR CCA 90 bp | GAGAGAAACTTTGAGAATTCACAGATGGCTGTTGTAGTCTTCATGGTCATCAGTTTTGGGAACCCAGCATaGCAAAGCCAGAGTCACATT | + |
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Preference number: 4 (lower is better) Translates to: ERNFENSQMAVVVFMVISFGNPA*QSQSHI Trigger: AATGTGACTCTGGCTTTGCCATGCTGGGTTCCCAAA...ACTGATGACCATGAAGACTACAACAGCCATCTGTGAATTCTCAAAGTTTCTCTC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027657.14 |
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| CDS-3UTR TCA 90 bp | GGAAGGAAACATATAATCATTGCACTTTCCATTTTTCCTTGCTTACAGAGACAATCAGACTCAACATACTaGTCTTTCTCATCAGACAGC | + |
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Preference number: 4 (lower is better) Translates to: GRKHIIIALSIFPCLQRQSDSTY*SFSSDS Trigger: GCTGTCTGATGAGAAAGATCAGTATGTTGAGTCTGA...TTGTCTCTGTAAGCAAGGAAAAATGGAAAGTGCAATGATTATATGTTTCCTTCC 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000027657.14 |
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| CDS-3UTR CCA 90 bp | ATGGATCCTGGCAGGGATGATGTCTTTAAACATGGACACAGTTTAAGTAATTTTGATTCCATGGTTATATaGGTAGAAGTCTTCTGTACC | + |
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Preference number: 4 (lower is better) Translates to: MDPGRDDVFKHGHSLSNFDSMVI*VEVFCT Trigger: GGTACAGAAGACTTCTACCCATATAACCATGGAATC...AAAATTACTTAAACTGTGTCCATGTTTAAAGACATCATCCCTGCCAGGATCCAT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027657.14 |
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| CDS-3UTR TCA 90 bp | GGAAGGAAACATATAATCATTGCACTTTCCATTTTTCCTTGCTTACAGAGACAACATTTTCACATCGTGTaGATTTGGCACATACTGCAT | + |
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Preference number: 4 (lower is better) Translates to: GRKHIIIALSIFPCLQRQHFHIV*IWHILH Trigger: ATGCAGTATGTGCCAAATTCACACGATGTGAAAATG...TTGTCTCTGTAAGCAAGGAAAAATGGAAAGTGCAATGATTATATGTTTCCTTCC 37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000027657.14 |
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| CDS TCA 90 bp | CTGCAGAGCGTAGAAAAGGGCCAGGCCACAGCATCTCTGTTTCTATaGAGCCTCCCATGTGCAGCTCTTGTGGGGAGCAGGGTCTGCTGC | + |
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Preference number: 5 (lower is better) Translates to: LQSVEKGQATASLFL*SLPCAALVGSRVCC Trigger: GCAGCAGACCCTGCTCCCCACAAGAGCTGCACATGGGAGGCTTCATAGAAACAGAGATGCTGTGGCCTGGCCCTTTTCTACGCTCTGCAG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000027657.14 ENSMUST00000137276.3 |
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| CDS GCA 90 bp | AAAGGGCCAGGCCACAGCATCTCTGTTTCTATGAAGCCTCCCATGTaGAGCTCTTGTGGGGAGCAGGGTCTGCTGCTGCTTTGCACACAT | + |
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Preference number: 5 (lower is better) Translates to: KGPGHSISVSMKPPM*SSCGEQGLLLLCTH Trigger: ATGTGTGCAAAGCAGCAGCAGACCCTGCTCCCCACAAGAGCTGCACATGGGAGGCTTCATAGAAACAGAGATGCTGTGGCCTGGCCCTTT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000027657.14 ENSMUST00000137276.3 |
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| CDS GCA 90 bp | GTCTTGTTGCCTGTAAGCGCAGGCTTAAGGTCTTCAGAGGCCTCCTaGTCACATCTGGGCACCTCTGGATACCAGGTTCCACTCTCTGAA | + |
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Preference number: 5 (lower is better) Translates to: VLLPVSAGLRSSEAS*SHLGTSGYQVPLSE Trigger: TTCAGAGAGTGGAACCTGGTATCCAGAGGTGCCCAGATGTGAGCAGGAGGCCTCTGAAGACCTTAAGCCTGCGCTTACAGGCAACAAGAC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027657.14 |
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| CDS-3UTR CAA 90 bp | ACAGATGCAAACGACAGTGGTACAGGCTTTCTCTCTGGGTATCGGGAGTGTAGCCTCCAGGCAACTCCTTaGCCTCGGACCTCACAAGAA | + |
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Preference number: 5 (lower is better) Translates to: TDANDSGTGFLSGYRECSLQATP*PRTSQE Trigger: TTCTTGTGAGGTCCGAGGCAAAGGAGTTGCCTGGAG...GCTACACTCCCGATACCCAGAGAGAAAGCCTGTACCACTGTCGTTTGCATCTGT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027657.14 |
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| CDS TCA 90 bp | CACATCTGGGCACCTCTGGATACCAGGTTCCACTCTCTGAACAACTaGTGCTTTGGGAACCCAGCATGGCAAAGCCAGAGTCACATTGGA | + |
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Preference number: 5 (lower is better) Translates to: HIWAPLDTRFHSLNN*CFGNPAWQSQSHIG Trigger: TCCAATGTGACTCTGGCTTTGCCATGCTGGGTTCCCAAAGCATCAGTTGTTCAGAGAGTGGAACCTGGTATCCAGAGGTGCCCAGATGTG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027657.14 |
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| CDS CCA 90 bp | CCGATTCACGTCACTTGCTGGCAGGGCATTGGGTATAGCAGGTGGTaGACCACATTTGCCAAATACAGCAACCCAAAGAGCAGCAGTAAA | + |
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Preference number: 5 (lower is better) Translates to: PIHVTCWQGIGYSRW*TTFAKYSNPKSSSK Trigger: TTTACTGCTGCTCTTTGGGTTGCTGTATTTGGCAAATGTGGTCCACCACCTGCTATACCCAATGCCCTGCCAGCAAGTGACGTGAATCGG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000027657.14 ENSMUST00000137276.3 |
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| CDS CCA 90 bp | TTGATATTCCCCTACCATAGCCAGGGAGGCATTCGTATTTCAGGGTaGTGTGACTTTCGAAGTCTGTCCGATTCACGTCACTTGCTGGCA | + |
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Preference number: 5 (lower is better) Translates to: LIFPYHSQGGIRISG*CDFRSLSDSRHLLA Trigger: TGCCAGCAAGTGACGTGAATCGGACAGACTTCGAAAGTCACACCACCCTGAAATACGAATGCCTCCCTGGCTATGGTAGGGGAATATCAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000027657.14 ENSMUST00000137276.3 |
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| CDS-3UTR CAA 90 bp | GGAAGCACTCAGACACGAATGAGGAAGGCTCAGAGGGAGCAAGGATGGTGCCTATTACGGCAATGTTTTTaGGCACAGGAGACAGAAATC | + |
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Preference number: 5 (lower is better) Translates to: GSTQTRMRKAQREQGWCLLRQCF*AQETEI Trigger: GATTTCTGTCTCCTGTGCCAAAAAACATTGCCGTAA...TAGGCACCATCCTTGCTCCCTCTGAGCCTTCCTCATTCGTGTCTGAGTGCTTCC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000027657.14 |
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| CDS CCA 90 bp | GAGCCTGAAGCCGGGATCACAGGTATAGGAGATTCCATGGTTATATaGGTAGAAGTCTTCTGTACCACTGTGCTTCCCATTGCTGATGTC | + |
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Preference number: 5 (lower is better) Translates to: EPEAGITGIGDSMVI*VEVFCTTVLPIADV Trigger: GACATCAGCAATGGGAAGCACAGTGGTACAGAAGACTTCTACCCATATAACCATGGAATCTCCTATACCTGTGATCCCGGCTTCAGGCTC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000027657.14 ENSMUST00000137276.3 ENSMUST00000171642.8 |
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| CDS-3UTR CAA 90 bp | GAGAGAAACTTTGAGAATTCACAGATGGCTGTTGTAGTCTTCATGGTCATCAGTTCCCATGTGCAGCTCTaGTGGGGAGCAGGGTCTGCT | + |
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Preference number: 5 (lower is better) Translates to: ERNFENSQMAVVVFMVISSHVQL*WGAGSA Trigger: AGCAGACCCTGCTCCCCACAAGAGCTGCACATGGGA...ACTGATGACCATGAAGACTACAACAGCCATCTGTGAATTCTCAAAGTTTCTCTC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027657.14 |
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| CDS-3UTR CAA 90 bp | GAAGTGACAATGGGAAGCACTCAGACACGAATGAGGAAGGCTCAGAGGGAGCAAAGCAGTAAAGGTCATTaGGAACAAAGTTGGGCCAGA | + |
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Preference number: 5 (lower is better) Translates to: EVTMGSTQTRMRKAQREQSSKGH*EQSWAR Trigger: TCTGGCCCAACTTTGTTCCAAATGACCTTTACTGCT...TTGCTCCCTCTGAGCCTTCCTCATTCGTGTCTGAGTGCTTCCCATTGTCACTTC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027657.14 |
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| CDS TCA 90 bp | GGTTATATGGGTAGAAGTCTTCTGTACCACTGTGCTTCCCATTGCTaGTGTCTGGAGGGGGCCCACACTTTACAATTACACATTCTGGGA | + |
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Preference number: 5 (lower is better) Translates to: GYMGRSLLYHCASHC*CLEGAHTLQLHILG Trigger: TCCCAGAATGTGTAATTGTAAAGTGTGGGCCCCCTCCAGACATCAGCAATGGGAAGCACAGTGGTACAGAAGACTTCTACCCATATAACC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000027657.14 ENSMUST00000137276.3 ENSMUST00000171642.8 |
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| CDS CCA 90 bp | CATTTGCCAAATACAGCAACCCAAAGAGCAGCAGTAAAGGTCATTTaGAACAAAGTTGGGCCAGAGACTCTGCAGAGCGTAGAAAAGGGC | + |
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Preference number: 5 (lower is better) Translates to: HLPNTATQRAAVKVI*NKVGPETLQSVEKG Trigger: GCCCTTTTCTACGCTCTGCAGAGTCTCTGGCCCAACTTTGTTCCAAATGACCTTTACTGCTGCTCTTTGGGTTGCTGTATTTGGCAAATG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000027657.14 ENSMUST00000137276.3 |
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| CDS CCA 90 bp | TGGGTAGAAGTCTTCTGTACCACTGTGCTTCCCATTGCTGATGTCTaGAGGGGGCCCACACTTTACAATTACACATTCTGGGAAAGGATT | + |
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Preference number: 5 (lower is better) Translates to: WVEVFCTTVLPIADV*RGPTLYNYTFWERI Trigger: AATCCTTTCCCAGAATGTGTAATTGTAAAGTGTGGGCCCCCTCCAGACATCAGCAATGGGAAGCACAGTGGTACAGAAGACTTCTACCCA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000027657.14 ENSMUST00000137276.3 ENSMUST00000171642.8 |
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| CDS-3UTR CAA 90 bp | AACATTGGTGCCAGCATTACAAAGGTTGGTAACTGCAGGCAATCTGTTTGGAACGGTGGTGGACCACATTaGCCAAATACAGCAACCCAA | + |
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Preference number: 5 (lower is better) Translates to: NIGASITKVGNCRQSVWNGGGPH*PNTATQ Trigger: TTGGGTTGCTGTATTTGGCAAATGTGGTCCACCACC...GTTCCAAACAGATTGCCTGCAGTTACCAACCTTTGTAATGCTGGCACCAATGTT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027657.14 |
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| CDS TCA 90 bp | AATATTTGGCTGAGAACAGATGATCTTTTCACAGGTAGGAGGGCTTaGGCTCCAAACAGGTACTGTTTTGTTCACCACAGTGCAGCCTAT | + |
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Preference number: 5 (lower is better) Translates to: NIWLRTDDLFTGRRA*APNRYCFVHHSAAY Trigger: ATAGGCTGCACTGTGGTGAACAAAACAGTACCTGTTTGGAGCTCAAGCCCTCCTACCTGTGAAAAGATCATCTGTTCTCAGCCAAATATT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000027657.14 ENSMUST00000137276.3 ENSMUST00000171642.8 |
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| CDS-3UTR CAA 90 bp | GGAAGGAAACATATAATCATTGCACTTTCCATTTTTCCTTGCTTACAGAGACAACAAACAGGTACTGTTTaGTTCACCACAGTGCAGCCT | + |
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Preference number: 5 (lower is better) Translates to: GRKHIIIALSIFPCLQRQQTGTV*FTTVQP Trigger: AGGCTGCACTGTGGTGAACAAAACAGTACCTGTTTG...TTGTCTCTGTAAGCAAGGAAAAATGGAAAGTGCAATGATTATATGTTTCCTTCC 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000027657.14 |
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| CDS GCA 72 bp | GGCCACAGCATCTCTGTTTCTATGAAGCCTCCCATGTaGAGCTCTTGTGGGGAGCAGGGTCTGCTGCTGCTT | + |
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Preference number: 6 (lower is better) Translates to: GHSISVSMKPPM*SSCGEQGLLLL Trigger: AAGCAGCAGCAGACCCTGCTCCCCACAAGAGCTGCACATGGGAGGCTTCATAGAAACAGAGATGCTGTGGCC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000027657.14 ENSMUST00000137276.3 |
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| CDS GCA 72 bp | CCTGTAAGCGCAGGCTTAAGGTCTTCAGAGGCCTCCTaGTCACATCTGGGCACCTCTGGATACCAGGTTCCA | + |
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Preference number: 6 (lower is better) Translates to: PVSAGLRSSEAS*SHLGTSGYQVP Trigger: TGGAACCTGGTATCCAGAGGTGCCCAGATGTGAGCAGGAGGCCTCTGAAGACCTTAAGCCTGCGCTTACAGG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027657.14 |
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| CDS TCA 72 bp | GTAGAAAAGGGCCAGGCCACAGCATCTCTGTTTCTATaGAGCCTCCCATGTGCAGCTCTTGTGGGGAGCAGG | + |
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Preference number: 6 (lower is better) Translates to: VEKGQATASLFL*SLPCAALVGSR Trigger: CCTGCTCCCCACAAGAGCTGCACATGGGAGGCTTCATAGAAACAGAGATGCTGTGGCCTGGCCCTTTTCTAC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000027657.14 ENSMUST00000137276.3 |
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| CDS CAA 72 bp | CAGGTAGGAGGGCTTGAGCTCCAAACAGGTACTGTTTaGTTCACCACAGTGCAGCCTATGAAGGGGCTGCCA | + |
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Preference number: 6 (lower is better) Translates to: QVGGLELQTGTV*FTTVQPMKGLP Trigger: TGGCAGCCCCTTCATAGGCTGCACTGTGGTGAACAAAACAGTACCTGTTTGGAGCTCAAGCCCTCCTACCTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000027657.14 ENSMUST00000137276.3 ENSMUST00000171642.8 |
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| CDS CCA 72 bp | GTCACTTGCTGGCAGGGCATTGGGTATAGCAGGTGGTaGACCACATTTGCCAAATACAGCAACCCAAAGAGC | + |
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Preference number: 6 (lower is better) Translates to: VTCWQGIGYSRW*TTFAKYSNPKS Trigger: GCTCTTTGGGTTGCTGTATTTGGCAAATGTGGTCCACCACCTGCTATACCCAATGCCCTGCCAGCAAGTGAC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000027657.14 ENSMUST00000137276.3 |
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| CDS CCA 72 bp | CCCTACCATAGCCAGGGAGGCATTCGTATTTCAGGGTaGTGTGACTTTCGAAGTCTGTCCGATTCACGTCAC | + |
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Preference number: 6 (lower is better) Translates to: PYHSQGGIRISG*CDFRSLSDSRH Trigger: GTGACGTGAATCGGACAGACTTCGAAAGTCACACCACCCTGAAATACGAATGCCTCCCTGGCTATGGTAGGG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000027657.14 ENSMUST00000137276.3 |
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| CDS CAA 90 bp | ATCTTTTCACAGGTAGGAGGGCTTGAGCTCCAAACAGGTACTGTTTaGTTCACCACAGTGCAGCCTATGAAGGGGCTGCCAACGAGCCTG | + |
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Preference number: 6 (lower is better) Translates to: IFSQVGGLELQTGTV*FTTVQPMKGLPTSL Trigger: CAGGCTCGTTGGCAGCCCCTTCATAGGCTGCACTGTGGTGAACAAAACAGTACCTGTTTGGAGCTCAAGCCCTCCTACCTGTGAAAAGAT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000027657.14 ENSMUST00000137276.3 ENSMUST00000171642.8 |
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| CDS TCA 72 bp | ACATCTGGGCACCTCTGGATACCAGGTTCCACTCTCTaGACAACTGATGCTTTGGGAACCCAGCATGGCAAA | + |
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Preference number: 6 (lower is better) Translates to: TSGHLWIPGSTL*TTDALGTQHGK Trigger: TTTGCCATGCTGGGTTCCCAAAGCATCAGTTGTTCAGAGAGTGGAACCTGGTATCCAGAGGTGCCCAGATGT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027657.14 |
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| CDS CCA 72 bp | GTCTGGAGGGGGCCCACACTTTACAATTACACATTCTaGGAAAGGATTACTCCAGGCAACTCCTTTGCCTCG | + |
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Preference number: 6 (lower is better) Translates to: VWRGPTLYNYTF*ERITPGNSFAS Trigger: CGAGGCAAAGGAGTTGCCTGGAGTAATCCTTTCCCAGAATGTGTAATTGTAAAGTGTGGGCCCCCTCCAGAC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000027657.14 ENSMUST00000137276.3 |
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| CDS CAA 72 bp | GGCAGGGCATTGGGTATAGCAGGTGGTGGACCACATTaGCCAAATACAGCAACCCAAAGAGCAGCAGTAAAG | + |
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Preference number: 6 (lower is better) Translates to: GRALGIAGGGPH*PNTATQRAAVK Trigger: CTTTACTGCTGCTCTTTGGGTTGCTGTATTTGGCAAATGTGGTCCACCACCTGCTATACCCAATGCCCTGCC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000027657.14 ENSMUST00000137276.3 |
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| CDS CCA 72 bp | GTCTTCTGTACCACTGTGCTTCCCATTGCTGATGTCTaGAGGGGGCCCACACTTTACAATTACACATTCTGG | + |
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Preference number: 6 (lower is better) Translates to: VFCTTVLPIADV*RGPTLYNYTFW Trigger: CCAGAATGTGTAATTGTAAAGTGTGGGCCCCCTCCAGACATCAGCAATGGGAAGCACAGTGGTACAGAAGAC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000027657.14 ENSMUST00000137276.3 ENSMUST00000171642.8 |
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| CDS CAA 72 bp | CCCATTCTCCCGAAGGTTTGCAGTAAACCATCATCCTaGATATTCCCCTACCATAGCCAGGGAGGCATTCGT | + |
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Preference number: 6 (lower is better) Translates to: PILPKVCSKPSS*IFPYHSQGGIR Trigger: ACGAATGCCTCCCTGGCTATGGTAGGGGAATATCAAGGATGATGGTTTACTGCAAACCTTCGGGAGAATGGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000027657.14 ENSMUST00000137276.3 |
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| CDS CAA 72 bp | ACACATTCTGGGAAAGGATTACTCCAGGCAACTCCTTaGCCTCGGACCTCACAAGAACTAGTGGATGAGCCA | + |
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Preference number: 6 (lower is better) Translates to: THSGKGLLQATP*PRTSQELVDEP Trigger: TGGCTCATCCACTAGTTCTTGTGAGGTCCGAGGCAAAGGAGTTGCCTGGAGTAATCCTTTCCCAGAATGTGT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000027657.14 ENSMUST00000137276.3 |
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| CDS TCA 72 bp | CCATTCTCCCGAAGGTTTGCAGTAAACCATCATCCTTaGTATTCCCCTACCATAGCCAGGGAGGCATTCGTA | + |
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Preference number: 6 (lower is better) Translates to: PFSRRFAVNHHP*YSPTIAREAFV Trigger: TACGAATGCCTCCCTGGCTATGGTAGGGGAATATCAAGGATGATGGTTTACTGCAAACCTTCGGGAGAATGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000027657.14 ENSMUST00000137276.3 |
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| CDS CAA 90 bp | ACATTTGCCAAATACAGCAACCCAAAGAGCAGCAGTAAAGGTCATTaGGAACAAAGTTGGGCCAGAGACTCTGCAGAGCGTAGAAAAGGG | + |
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Preference number: 6 (lower is better) Translates to: TFAKYSNPKSSSKGH*EQSWARDSAERRKG Trigger: CCCTTTTCTACGCTCTGCAGAGTCTCTGGCCCAACTTTGTTCCAAATGACCTTTACTGCTGCTCTTTGGGTTGCTGTATTTGGCAAATGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000027657.14 ENSMUST00000137276.3 |
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| CDS TCA 72 bp | TCATCAGACAGCGTTCCATTTCCTACCTCTGGTTTCTaGCATAGAGCTTTACACTGTGGAGCTGTCCCTTTC | + |
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Preference number: 6 (lower is better) Translates to: SSDSVPFPTSGF*HRALHCGAVPF Trigger: GAAAGGGACAGCTCCACAGTGTAAAGCTCTATGTCAGAAACCAGAGGTAGGAAATGGAACGCTGTCTGATGA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000027657.14 ENSMUST00000171642.8 |
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| CDS GCA 72 bp | AGAGCCATTTTCACATCGTGTGAATTTGGCACATACTaGATGGTCTTGTTGCCTGTAAGCGCAGGCTTAAGG | + |
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Preference number: 6 (lower is better) Translates to: RAIFTSCEFGTY*MVLLPVSAGLR Trigger: CCTTAAGCCTGCGCTTACAGGCAACAAGACCATGCAGTATGTGCCAAATTCACACGATGTGAAAATGGCTCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027657.14 |
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| CDS CCA 72 bp | AATACAGCAACCCAAAGAGCAGCAGTAAAGGTCATTTaGAACAAAGTTGGGCCAGAGACTCTGCAGAGCGTA | + |
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Preference number: 6 (lower is better) Translates to: NTATQRAAVKVI*NKVGPETLQSV Trigger: TACGCTCTGCAGAGTCTCTGGCCCAACTTTGTTCCAAATGACCTTTACTGCTGCTCTTTGGGTTGCTGTATT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000027657.14 ENSMUST00000137276.3 |
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| CDS CAA 72 bp | AAATACAGCAACCCAAAGAGCAGCAGTAAAGGTCATTaGGAACAAAGTTGGGCCAGAGACTCTGCAGAGCGT | + |
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Preference number: 6 (lower is better) Translates to: KYSNPKSSSKGH*EQSWARDSAER Trigger: ACGCTCTGCAGAGTCTCTGGCCCAACTTTGTTCCAAATGACCTTTACTGCTGCTCTTTGGGTTGCTGTATTT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000027657.14 ENSMUST00000137276.3 |
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| CDS TCA 72 bp | CTGAGAACAGATGATCTTTTCACAGGTAGGAGGGCTTaGGCTCCAAACAGGTACTGTTTTGTTCACCACAGT | + |
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Preference number: 6 (lower is better) Translates to: LRTDDLFTGRRA*APNRYCFVHHS Trigger: ACTGTGGTGAACAAAACAGTACCTGTTTGGAGCTCAAGCCCTCCTACCTGTGAAAAGATCATCTGTTCTCAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000027657.14 ENSMUST00000137276.3 ENSMUST00000171642.8 |
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| CDS TCA 72 bp | GAGCTGTCCCTTTCCACTTTGAAAAGCTGCAGGAGATaGTTGCCTTTCCAACCAGTCTGTATCCTTTATCAC | + |
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Preference number: 6 (lower is better) Translates to: ELSLSTLKSCRR*LPFQPVCILYH Trigger: GTGATAAAGGATACAGACTGGTTGGAAAGGCAATCATCTCCTGCAGCTTTTCAAAGTGGAAAGGGACAGCTC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000027657.14 ENSMUST00000171642.8 |
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| CDS GCA 72 bp | CACAGGAGACAGAAATCTCCCATTCTCCCGAAGGTTTaGAGTAAACCATCATCCTTGATATTCCCCTACCAT | + |
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Preference number: 6 (lower is better) Translates to: HRRQKSPILPKV*SKPSSLIFPYH Trigger: ATGGTAGGGGAATATCAAGGATGATGGTTTACTGCAAACCTTCGGGAGAATGGGAGATTTCTGTCTCCTGTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000027657.14 ENSMUST00000137276.3 |
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| CDS CAA 90 bp | TTTACATATCCATTATCTAAATATCCTGGATTACGGCAATGTTTTTaGGCACAGGAGACAGAAATCTCCCATTCTCCCGAAGGTTTGCAG | + |
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Preference number: 6 (lower is better) Translates to: FTYPLSKYPGLRQCF*AQETEISHSPEGLQ Trigger: CTGCAAACCTTCGGGAGAATGGGAGATTTCTGTCTCCTGTGCCAAAAAACATTGCCGTAATCCAGGATATTTAGATAATGGATATGTAAA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000027657.14 ENSMUST00000137276.3 |
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