Pregenerated sensors for C4B (Mus musculus)
Ensembl gene IDs: ENSMUSG00000073418Ensembl transcript IDs: ENSMUST00000069507.9, ENSMUST00000173057.2
Found 59 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | AAGCTTTTCTTTTATTTACCCTGTAGAGCAGAGCCTCTAATCCAGTaGGGCCCTAACCCTGAGCTGAGCTCAGAGAGCCAGAGTCCTAAG | + |
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Preference number: 1 (lower is better) Translates to: KLFFYLPCRAEPLIQ*GPNPELSSESQSPK Trigger: CTTAGGACTCTGGCTCTCTGAGCTCAGCTCAGGGTTAGGGCCTCACTGGATTAGAGGCTCTGCTCTACAGGGTAAATAAAAGAAAAGCTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000069507.9 |
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| 3UTR-3UTR CCA 90 bp | GAACCCATAGTCTCCAAGGGTTCCGAGGCTGTAACCCTGACTAAGCTGCTGAAGCCGGGCAGAACCTGCTaGCACTGTCACCTGCTGGGC | + |
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Preference number: 2 (lower is better) Translates to: EPIVSKGSEAVTLTKLLKPGRTC*HCHLLG Trigger: GCCCAGCAGGTGACAGTGCCAGCAGGTTCTGCCCGG...CTTCAGCAGCTTAGTCAGGGTTACAGCCTCGGAACCCTTGGAGACTATGGGTTC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000173057.2 |
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| 3UTR-3UTR GCA 90 bp | AGATCCACAGCATGGTCCTTTGTTTCAGGGGACAGTTTGCTCCACTGTTCTGTCAGGCCGGGCAGAACCTaGTGGCACTGTCACCTGCTG | + |
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Preference number: 2 (lower is better) Translates to: RSTAWSFVSGDSLLHCSVRPGRT*WHCHLL Trigger: CAGCAGGTGACAGTGCCAGCAGGTTCTGCCCGGCCT...GACAGAACAGTGGAGCAAACTGTCCCCTGAAACAAAGGACCATGCTGTGGATCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000173057.2 |
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| 3UTR-3UTR CCA 90 bp | ACAGCATGGTCCTTTGTTTCAGGGGACAGTTTGCTCCACTGTTCTGTCCTGTCCCCTTCAGGGGCACGTTaGCAGCAGCTGTGGGTACCA | + |
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Preference number: 2 (lower is better) Translates to: TAWSFVSGDSLLHCSVLSPSGAR*QQLWVP Trigger: TGGTACCCACAGCTGCTGCCAACGTGCCCCTGAAGG...GGACAGGACAGAACAGTGGAGCAAACTGTCCCCTGAAACAAAGGACCATGCTGT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000173057.2 |
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| 3UTR-3UTR CCA 90 bp | GAGGCCACACCTCCTGGGGACAAGGCACCTTCAGAACCCATAGTCTCCAAGGGTACTCTTCTCTGTGGATaGCTCCTTCCTTCTCAATTT | + |
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Preference number: 2 (lower is better) Translates to: EATPPGDKAPSEPIVSKGTLLCG*LLPSQF Trigger: AAATTGAGAAGGAAGGAGCCATCCACAGAGAAGAGT...ACCCTTGGAGACTATGGGTTCTGAAGGTGCCTTGTCCCCAGGAGGTGTGGCCTC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000173057.2 |
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| 3UTR-3UTR CCA 90 bp | ACTAACTCTTCTCTGTGGATGGCTCCTTCCTTCTCAATTTGGAGAATCTTAGACCGTTGGCAGCAGCTGTaGGTACCACAGAGAAGGCCA | + |
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Preference number: 2 (lower is better) Translates to: TNSSLWMAPSFSIWRILDRWQQL*VPQRRP Trigger: TGGCCTTCTCTGTGGTACCCACAGCTGCTGCCAACG...GTCTAAGATTCTCCAAATTGAGAAGGAAGGAGCCATCCACAGAGAAGAGTTAGT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000173057.2 |
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| 3UTR-3UTR CCA 90 bp | CCTTCAGAACCCATAGTCTCCAAGGGTTCCGAGGCTGTAACCCTGACTAAGCTGCCTTCCTTCTCAATTTaGAGAATCTTAGACACAGCA | + |
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Preference number: 2 (lower is better) Translates to: PSEPIVSKGSEAVTLTKLPSFSI*RILDTA Trigger: TGCTGTGTCTAAGATTCTCCAAATTGAGAAGGAAGG...CAGCTTAGTCAGGGTTACAGCCTCGGAACCCTTGGAGACTATGGGTTCTGAAGG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000173057.2 |
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| 3UTR-3UTR CCA 90 bp | ATCCACAGCATGGTCCTTTGTTTCAGGGGACAGTTTGCTCCACTGTTCTGTCCTACTAACTCTTCTCTGTaGATGGCTCCTTCCTTCTCA | + |
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Preference number: 2 (lower is better) Translates to: IHSMVLCFRGQFAPLFCPTNSSL*MAPSFS Trigger: TGAGAAGGAAGGAGCCATCCACAGAGAAGAGTTAGT...AGGACAGAACAGTGGAGCAAACTGTCCCCTGAAACAAAGGACCATGCTGTGGAT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000173057.2 |
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| 3UTR-3UTR CAA 90 bp | GAGGCCACACCTCCTGGGGACAAGGCACCTTCAGAACCCATAGTCTCCAAGGGTACCTTCAGGGGCACGTaGGCAGCAGCTGTGGGTACC | + |
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Preference number: 3 (lower is better) Translates to: EATPPGDKAPSEPIVSKGTFRGT*AAAVGT Trigger: GGTACCCACAGCTGCTGCCAACGTGCCCCTGAAGGT...ACCCTTGGAGACTATGGGTTCTGAAGGTGCCTTGTCCCCAGGAGGTGTGGCCTC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000173057.2 |
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| 3UTR TCA 72 bp | TTTTATTTACCCTGTAGAGCAGAGCCTCTAATCCAGTaGGGCCCTAACCCTGAGCTGAGCTCAGAGAGCCAG | + |
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Preference number: 3 (lower is better) Translates to: FYLPCRAEPLIQ*GPNPELSSESQ Trigger: CTGGCTCTCTGAGCTCAGCTCAGGGTTAGGGCCTCACTGGATTAGAGGCTCTGCTCTACAGGGTAAATAAAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000069507.9 |
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| CDS-3UTR CCA 90 bp | ACAGCATGGTCCTTTGTTTCAGGGGACAGTTTGCTCCACTGTTCTGTCCTGTCCAGGCGCAGGTGCAGGTaGAATTTTCTGAACACTCGA | + |
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Preference number: 4 (lower is better) Translates to: TAWSFVSGDSLLHCSVLSRRRCR*NFLNTR Trigger: TCGAGTGTTCAGAAAATTCCACCTGCACCTGCGCCT...GGACAGGACAGAACAGTGGAGCAAACTGTCCCCTGAAACAAAGGACCATGCTGT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000173057.2 |
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| CDS-3UTR CCA 90 bp | CTGTGGATGGCTCCTTCCTTCTCAATTTGGAGAATCTTAGACACAGCATCCCCTCACTCGAACACGAGTTaGCTTGGCTACACACAGACC | + |
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Preference number: 4 (lower is better) Translates to: LWMAPSFSIWRILDTASPHSNTS*LGYTQT Trigger: GGTCTGTGTGTAGCCAAGCCAACTCGTGTTCGAGTG...AGGGGATGCTGTGTCTAAGATTCTCCAAATTGAGAAGGAAGGAGCCATCCACAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000173057.2 |
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| CDS-3UTR GCA 90 bp | AGATCCACAGCATGGTCCTTTGTTTCAGGGGACAGTTTGCTCCACTGTTCTGTCCTACACACAGACCTTTaGTTTTGGACAGGCTCACAC | + |
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Preference number: 4 (lower is better) Translates to: RSTAWSFVSGDSLLHCSVLHTDL*FWTGSH Trigger: GTGTGAGCCTGTCCAAAAGCAAAGGTCTGTGTGTAG...GACAGAACAGTGGAGCAAACTGTCCCCTGAAACAAAGGACCATGCTGTGGATCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000173057.2 |
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| CDS-3UTR GCA 90 bp | ACTAACTCTTCTCTGTGGATGGCTCCTTCCTTCTCAATTTGGAGAATCTTAGACATGGGCAGGCGCAGGTaGAGGTGGAATTTTCTGAAC | + |
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Preference number: 4 (lower is better) Translates to: TNSSLWMAPSFSIWRILDMGRRR*RWNFLN Trigger: GTTCAGAAAATTCCACCTGCACCTGCGCCTGCCCAT...GTCTAAGATTCTCCAAATTGAGAAGGAAGGAGCCATCCACAGAGAAGAGTTAGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000173057.2 |
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| CDS GCA 90 bp | GTGCCTGGCTCCTGGTCTGGTTCCTGCGAAGGTCCTCAGCAAACTTaGAACAGGACAAGAAGGGCTCACGGCAGGCCTGCTGAGGCACAC | + |
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Preference number: 5 (lower is better) Translates to: VPGSWSGSCEGPQQT*NRTRRAHGRPAEAH Trigger: GTGTGCCTCAGCAGGCCTGCCGTGAGCCCTTCTTGTCCTGTTGCAAGTTTGCTGAGGACCTTCGCAGGAACCAGACCAGGAGCCAGGCAC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000069507.9 |
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| CDS GCA 90 bp | AACTTGGCCTGCGTCTCTAGGCCCCGAAGGAAAGTCCTCTTCCCTTaGTCATCCATGAGCGCAAACCGTGTGTATGCCACGCCCTGCACG | + |
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Preference number: 5 (lower is better) Translates to: NLACVSRPRRKVLFP*SSMSANRVYATPCT Trigger: CGTGCAGGGCGTGGCATACACACGGTTTGCGCTCATGGATGAGCAAGGGAAGAGGACTTTCCTTCGGGGCCTAGAGACGCAGGCCAAGTT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000069507.9 |
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| CDS CCA 90 bp | ACTGGTCCTTTGAGATGGAAATGTGGGTCCGGCCTTCCACCAACTTaGCCTGCGTCTCTAGGCCCCGAAGGAAAGTCCTCTTCCCTTGCT | + |
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Preference number: 5 (lower is better) Translates to: TGPLRWKCGSGLPPT*PASLGPEGKSSSLA Trigger: AGCAAGGGAAGAGGACTTTCCTTCGGGGCCTAGAGACGCAGGCCAAGTTGGTGGAAGGCCGGACCCACATTTCCATCTCAAAGGACCAGT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000069507.9 |
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| CDS-3UTR CAA 90 bp | GAGGCCACACCTCCTGGGGACAAGGCACCTTCAGAACCCATAGTCTCCAAGGGTACACTCGAACACGAGTaGGCTTGGCTACACACAGAC | + |
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Preference number: 5 (lower is better) Translates to: EATPPGDKAPSEPIVSKGTLEHE*AWLHTD Trigger: GTCTGTGTGTAGCCAAGCCAACTCGTGTTCGAGTGT...ACCCTTGGAGACTATGGGTTCTGAAGGTGCCTTGTCCCCAGGAGGTGTGGCCTC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000173057.2 |
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| CDS GCA 90 bp | CAAGTCTTCCTCCTGCAGCATGTTGTGGTTGTTTCGGGCAAGGTGTaGCTGGCTCCTGGTCTGGTTCCTGCGAAGGTCCTCAGCAAACTT | + |
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Preference number: 5 (lower is better) Translates to: QVFLLQHVVVVSGKV*LAPGLVPAKVLSKL Trigger: AAGTTTGCTGAGGACCTTCGCAGGAACCAGACCAGGAGCCAGGCACACCTTGCCCGAAACAACCACAACATGCTGCAGGAGGAAGACTTG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000069507.9 |
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| CDS GCA 90 bp | GAGGTGCGCACAAGAATGTCGTCTTCATCTATCAAGTCTTCCTCCTaGAGCATGTTGTGGTTGTTTCGGGCAAGGTGTGCCTGGCTCCTG | + |
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Preference number: 5 (lower is better) Translates to: EVRTRMSSSSIKSSS*SMLWLFRARCAWLL Trigger: CAGGAGCCAGGCACACCTTGCCCGAAACAACCACAACATGCTGCAGGAGGAAGACTTGATAGATGAAGACGACATTCTTGTGCGCACCTC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000069507.9 |
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| CDS TCA 90 bp | ACAAAGATGTGGCCTCGTCGGGAAGAGAAGAGCAAGTTGACACCCTaGGTCTCTGTGGCTTTGAAAGCTGTGTTCCTTAGCCACGGAGAC | + |
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Preference number: 5 (lower is better) Translates to: TKMWPRREEKSKLTP*VSVALKAVFLSHGD Trigger: GTCTCCGTGGCTAAGGAACACAGCTTTCAAAGCCACAGAGACTCAGGGTGTCAACTTGCTCTTCTCTTCCCGACGAGGCCACATCTTTGT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000069507.9 |
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| CDS TCA 90 bp | TGCCGACTTTTCTTCTCCTTGGGACAGCTCAGGTCCTCTCTGGTTTaGGTTAGTCGATCACCATCAGAAAAGGCCAGACCAGCATCCTGG | + |
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Preference number: 5 (lower is better) Translates to: CRLFFSLGQLRSSLV*VSRSPSEKARPASW Trigger: CCAGGATGCTGGTCTGGCCTTTTCTGATGGTGATCGACTAACTCAAACCAGAGAGGACCTGAGCTGTCCCAAGGAGAAGAAAAGTCGGCA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000069507.9 |
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| CDS CCA 90 bp | ATGGATGTGGAAGTAAATATCTCCTTCTTGAGTACACGGAGGCCATaGGAGTTCTCCACTGTGATGGTGAGGAAATCAGTGGATGGGCGC | + |
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Preference number: 5 (lower is better) Translates to: MDVEVNISFLSTRRP*EFSTVMVRKSVDGR Trigger: GCGCCCATCCACTGATTTCCTCACCATCACAGTGGAGAACTCCCATGGCCTCCGTGTACTCAAGAAGGAGATATTTACTTCCACATCCAT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000069507.9 |
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| CDS-3UTR CAA 90 bp | ATCCACAGCATGGTCCTTTGTTTCAGGGGACAGTTTGCTCCACTGTTCTGTCCTGCTACACACAGACCTTaGCTTTTGGACAGGCTCACA | + |
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Preference number: 5 (lower is better) Translates to: IHSMVLCFRGQFAPLFCPATHRP*LLDRLT Trigger: TGTGAGCCTGTCCAAAAGCAAAGGTCTGTGTGTAGC...AGGACAGAACAGTGGAGCAAACTGTCCCCTGAAACAAAGGACCATGCTGTGGAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000173057.2 |
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| CDS CCA 72 bp | CCCTGCATTGCTCTGTGGATGACTGGACATGGGTCGTaGAAGGAGCCATCACCCAGCTGCTGGGCCAGCAGC | + |
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Preference number: 6 (lower is better) Translates to: PCIALWMTGHGS*KEPSPSCWASS Trigger: GCTGCTGGCCCAGCAGCTGGGTGATGGCTCCTTCCACGACCCATGTCCAGTCATCCACAGAGCAATGCAGGG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000069507.9 |
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| CDS CCA 72 bp | TCCCCTGTTTCCTCAGCCATGGCCATCAGGCTGTTGTaGGCAACATTCCGCAGGTCCTCCGAGGCCTTGGTC | + |
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Preference number: 6 (lower is better) Translates to: SPVSSAMAIRLL*ATFRRSSEALV Trigger: GACCAAGGCCTCGGAGGACCTGCGGAATGTTGCCCACAACAGCCTGATGGCCATGGCTGAGGAAACAGGGGA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000069507.9 |
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| CDS CCA 72 bp | GACCTTAGCAGTCGAGGGCACTTCCCCTCAGCGCACTaGCATACATCTCCAGAGCACAGTGTGGCCAGGAGC | + |
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Preference number: 6 (lower is better) Translates to: DLSSRGHFPSAH*HTSPEHSVARS Trigger: GCTCCTGGCCACACTGTGCTCTGGAGATGTATGCCAGTGCGCTGAGGGGAAGTGCCCTCGACTGCTAAGGTC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000069507.9 |
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| CDS TCA 72 bp | AGGCGGCAAGAGGCCCGGCTCAGGAAGTTGCGGGTCTaGCCTATGGAGGCCATGGTGTCCTTTCTGAAATGC | + |
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Preference number: 6 (lower is better) Translates to: RRQEARLRKLRV*PMEAMVSFLKC Trigger: GCATTTCAGAAAGGACACCATGGCCTCCATAGGTCAGACCCGCAACTTCCTGAGCCGGGCCTCTTGCCGCCT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000069507.9 |
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| CDS GCA 72 bp | GGGCGTGACAGGCTGCAAGGGGACGCTGGGGTCATCTaGGGCTGGCATGTCATAGTAGTCTTCGTAGTCTTC | + |
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Preference number: 6 (lower is better) Translates to: GRDRLQGDAGVI*GWHVIVVFVVF Trigger: GAAGACTACGAAGACTACTATGACATGCCAGCCGCAGATGACCCCAGCGTCCCCTTGCAGCCTGTCACGCCC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000069507.9 |
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| CDS CAA 72 bp | CTCCTGGTCTGGTTCCTGCGAAGGTCCTCAGCAAACTaGCAACAGGACAAGAAGGGCTCACGGCAGGCCTGC | + |
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Preference number: 6 (lower is better) Translates to: LLVWFLRRSSAN*QQDKKGSRQAC Trigger: GCAGGCCTGCCGTGAGCCCTTCTTGTCCTGTTGCAAGTTTGCTGAGGACCTTCGCAGGAACCAGACCAGGAG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000069507.9 |
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| CDS CAA 72 bp | TGTTCCCCTGTTTCCTCAGCCATGGCCATCAGGCTGTaGTGGGCAACATTCCGCAGGTCCTCCGAGGCCTTG | + |
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Preference number: 6 (lower is better) Translates to: CSPVSSAMAIRL*WATFRRSSEAL Trigger: CAAGGCCTCGGAGGACCTGCGGAATGTTGCCCACAACAGCCTGATGGCCATGGCTGAGGAAACAGGGGAACA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000069507.9 |
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| CDS GCA 72 bp | ATGGAAATGTGGGTCCGGCCTTCCACCAACTTGGCCTaGGTCTCTAGGCCCCGAAGGAAAGTCCTCTTCCCT | + |
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Preference number: 6 (lower is better) Translates to: MEMWVRPSTNLA*VSRPRRKVLFP Trigger: AGGGAAGAGGACTTTCCTTCGGGGCCTAGAGACGCAGGCCAAGTTGGTGGAAGGCCGGACCCACATTTCCAT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000069507.9 |
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| CDS GCA 72 bp | TCCTGGTCTGGTTCCTGCGAAGGTCCTCAGCAAACTTaGAACAGGACAAGAAGGGCTCACGGCAGGCCTGCT | + |
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Preference number: 6 (lower is better) Translates to: SWSGSCEGPQQT*NRTRRAHGRPA Trigger: AGCAGGCCTGCCGTGAGCCCTTCTTGTCCTGTTGCAAGTTTGCTGAGGACCTTCGCAGGAACCAGACCAGGA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000069507.9 |
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| CDS CCA 72 bp | ATCAGGGCTGTAGTAGTCATACAGGACAGCACTGGATaGCTGCACCAGTCCCACAACCACCTCCTGCGAGGC | + |
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Preference number: 6 (lower is better) Translates to: IRAVVVIQDSTG*LHQSHNHLLRG Trigger: GCCTCGCAGGAGGTGGTTGTGGGACTGGTGCAGCCATCCAGTGCTGTCCTGTATGACTACTACAGCCCTGAT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000069507.9 |
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| CDS CCA 72 bp | CCTCAGCGCACTGGCATACATCTCCAGAGCACAGTGTaGCCAGGAGCTGGCTCTTGGTGGGTGCAGCATAAA | + |
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Preference number: 6 (lower is better) Translates to: PQRTGIHLQSTV*PGAGSWWVQHK Trigger: TTTATGCTGCACCCACCAAGAGCCAGCTCCTGGCCACACTGTGCTCTGGAGATGTATGCCAGTGCGCTGAGG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000069507.9 |
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| CDS CAA 90 bp | GGCACCATCCACCTTCAATTGCAGCTTGCCCTCACAGTCCCTGGATaGGATGTTGATGAGCAGAGAGTTGGCCACCGGGTGTCCTTGGTG | + |
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Preference number: 6 (lower is better) Translates to: GTIHLQLQLALTVPG*DVDEQRVGHRVSLV Trigger: CACCAAGGACACCCGGTGGCCAACTCTCTGCTCATCAACATCCAATCCAGGGACTGTGAGGGCAAGCTGCAATTGAAGGTGGATGGTGCC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000069507.9 |
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| CDS GCA 72 bp | TGCGTCTCTAGGCCCCGAAGGAAAGTCCTCTTCCCTTaGTCATCCATGAGCGCAAACCGTGTGTATGCCACG | + |
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Preference number: 6 (lower is better) Translates to: CVSRPRRKVLFP*SSMSANRVYAT Trigger: CGTGGCATACACACGGTTTGCGCTCATGGATGAGCAAGGGAAGAGGACTTTCCTTCGGGGCCTAGAGACGCA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000069507.9 |
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| CDS CCA 72 bp | TTGAGATGGAAATGTGGGTCCGGCCTTCCACCAACTTaGCCTGCGTCTCTAGGCCCCGAAGGAAAGTCCTCT | + |
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Preference number: 6 (lower is better) Translates to: LRWKCGSGLPPT*PASLGPEGKSS Trigger: AGAGGACTTTCCTTCGGGGCCTAGAGACGCAGGCCAAGTTGGTGGAAGGCCGGACCCACATTTCCATCTCAA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000069507.9 |
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| CDS CCA 72 bp | GACAGGCTGCAAGGGGACGCTGGGGTCATCTGCGGCTaGCATGTCATAGTAGTCTTCGTAGTCTTCATTGGC | + |
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Preference number: 6 (lower is better) Translates to: DRLQGDAGVICG*HVIVVFVVFIG Trigger: GCCAATGAAGACTACGAAGACTACTATGACATGCCAGCCGCAGATGACCCCAGCGTCCCCTTGCAGCCTGTC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000069507.9 |
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| CDS CCA 72 bp | CAGGTCAAAGAGGCCACAGCTCCTCACATCTTCCAGTaGGACCTCAAGGCTGAGCAGCACAAAGTCATCTCC | + |
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Preference number: 6 (lower is better) Translates to: QVKEATAPHIFQ*DLKAEQHKVIS Trigger: GGAGATGACTTTGTGCTGCTCAGCCTTGAGGTCCCACTGGAAGATGTGAGGAGCTGTGGCCTCTTTGACCTG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000069507.9 |
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| CDS CAA 72 bp | CACCTTCAATTGCAGCTTGCCCTCACAGTCCCTGGATaGGATGTTGATGAGCAGAGAGTTGGCCACCGGGTG | + |
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Preference number: 6 (lower is better) Translates to: HLQLQLALTVPG*DVDEQRVGHRV Trigger: CACCCGGTGGCCAACTCTCTGCTCATCAACATCCAATCCAGGGACTGTGAGGGCAAGCTGCAATTGAAGGTG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000069507.9 |
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| CDS CCA 72 bp | ACCTTCAATTGCAGCTTGCCCTCACAGTCCCTGGATTaGATGTTGATGAGCAGAGAGTTGGCCACCGGGTGT | + |
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Preference number: 6 (lower is better) Translates to: TFNCSLPSQSLD*MLMSRELATGC Trigger: ACACCCGGTGGCCAACTCTCTGCTCATCAACATCCAATCCAGGGACTGTGAGGGCAAGCTGCAATTGAAGGT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000069507.9 |
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| CDS CAA 72 bp | TCATCTATCAAGTCTTCCTCCTGCAGCATGTTGTGGTaGTTTCGGGCAAGGTGTGCCTGGCTCCTGGTCTGG | + |
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Preference number: 6 (lower is better) Translates to: SSIKSSSCSMLW*FRARCAWLLVW Trigger: CCAGACCAGGAGCCAGGCACACCTTGCCCGAAACAACCACAACATGCTGCAGGAGGAAGACTTGATAGATGA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000069507.9 |
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| CDS CCA 72 bp | CGCAGACACCAAGAGTCGAAGTTCTGTGACAGTTGGTaGGATGGGGAAGGAAATGCTGACTTGGCCAATTCC | + |
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Preference number: 6 (lower is better) Translates to: RRHQESKFCDSW*DGEGNADLANS Trigger: GGAATTGGCCAAGTCAGCATTTCCTTCCCCATCCCACCAACTGTCACAGAACTTCGACTCTTGGTGTCTGCG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000069507.9 |
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| CDS CCA 72 bp | ATCTCCTCAATCCAGGTATTTGAGTCCAGCAAGTACTaGGGGTCTCCCTTGTTGTCACTGGTTTCCCCGTCC | + |
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Preference number: 6 (lower is better) Translates to: ISSIQVFESSKY*GSPLLSLVSPS Trigger: GGACGGGGAAACCAGTGACAACAAGGGAGACCCCCAGTACTTGCTGGACTCAAATACCTGGATTGAGGAGAT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000069507.9 |
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| CDS CAA 72 bp | CGATACTCCTTGGCACCATCCACCTTCAATTGCAGCTaGCCCTCACAGTCCCTGGATTGGATGTTGATGAGC | + |
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Preference number: 6 (lower is better) Translates to: RYSLAPSTFNCS*PSQSLDWMLMS Trigger: GCTCATCAACATCCAATCCAGGGACTGTGAGGGCAAGCTGCAATTGAAGGTGGATGGTGCCAAGGAGTATCG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000069507.9 |
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| CDS TCA 72 bp | AGAGACTTTAACAGGAACGTTGGAGGCTTCAGAGCCTaGCATTTCTTGGACCAGAGCCTGCAGCAGGAAGTG | + |
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Preference number: 6 (lower is better) Translates to: RDFNRNVGGFRA*HFLDQSLQQEV Trigger: CACTTCCTGCTGCAGGCTCTGGTCCAAGAAATGTCAGGCTCTGAAGCCTCCAACGTTCCTGTTAAAGTCTCT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000069507.9 |
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| CDS CCA 72 bp | ACCCCAATATTGATTTTATCCAGGGCAGCCTGGAACTaGTCCTTTGAGATGGAAATGTGGGTCCGGCCTTCC | + |
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Preference number: 6 (lower is better) Translates to: TPILILSRAAWN*SFEMEMWVRPS Trigger: GGAAGGCCGGACCCACATTTCCATCTCAAAGGACCAGTTCCAGGCTGCCCTGGATAAAATCAATATTGGGGT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000069507.9 |
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| CDS CCA 72 bp | TTCGGAGCTTCATCATGTCCGCATTACGATACTCCTTaGCACCATCCACCTTCAATTGCAGCTTGCCCTCAC | + |
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Preference number: 6 (lower is better) Translates to: FGASSCPHYDTP*HHPPSIAACPH Trigger: GTGAGGGCAAGCTGCAATTGAAGGTGGATGGTGCCAAGGAGTATCGTAATGCGGACATGATGAAGCTCCGAA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000069507.9 |
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| CDS CAA 72 bp | CGCATTACGATACTCCTTGGCACCATCCACCTTCAATaGCAGCTTGCCCTCACAGTCCCTGGATTGGATGTT | + |
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Preference number: 6 (lower is better) Translates to: RITILLGTIHLQ*QLALTVPGLDV Trigger: AACATCCAATCCAGGGACTGTGAGGGCAAGCTGCAATTGAAGGTGGATGGTGCCAAGGAGTATCGTAATGCG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000069507.9 |
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| CDS TCA 72 bp | ATTGATTTTATCCAGGGCAGCCTGGAACTGGTCCTTTaGGATGGAAATGTGGGTCCGGCCTTCCACCAACTT | + |
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Preference number: 6 (lower is better) Translates to: IDFIQGSLELVL*DGNVGPAFHQL Trigger: AAGTTGGTGGAAGGCCGGACCCACATTTCCATCTCAAAGGACCAGTTCCAGGCTGCCCTGGATAAAATCAAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000069507.9 |
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| CDS TCA 72 bp | GAAATGCTGACTTGGCCAATTCCATTGGTGCTCTGTTaGATGTCAAGGACTTGGGAGTCAGAGCCTGACACC | + |
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Preference number: 6 (lower is better) Translates to: EMLTWPIPLVLC*MSRTWESEPDT Trigger: GGTGTCAGGCTCTGACTCCCAAGTCCTTGACATTCAACAGAGCACCAATGGAATTGGCCAAGTCAGCATTTC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000069507.9 |
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| CDS CCA 72 bp | TCTCTGACCCCAATATTGATTTTATCCAGGGCAGCCTaGAACTGGTCCTTTGAGATGGAAATGTGGGTCCGG | + |
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Preference number: 6 (lower is better) Translates to: SLTPILILSRAA*NWSFEMEMWVR Trigger: CCGGACCCACATTTCCATCTCAAAGGACCAGTTCCAGGCTGCCCTGGATAAAATCAATATTGGGGTCAGAGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000069507.9 |
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| CDS CAA 90 bp | TCGAAGTTCTGTGACAGTTGGTGGGATGGGGAAGGAAATGCTGACTaGGCCAATTCCATTGGTGCTCTGTTGAATGTCAAGGACTTGGGA | + |
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Preference number: 6 (lower is better) Translates to: SKFCDSWWDGEGNAD*ANSIGALLNVKDLG Trigger: TCCCAAGTCCTTGACATTCAACAGAGCACCAATGGAATTGGCCAAGTCAGCATTTCCTTCCCCATCCCACCAACTGTCACAGAACTTCGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000069507.9 |
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| CDS GCA 72 bp | ACAAGAATGTCGTCTTCATCTATCAAGTCTTCCTCCTaGAGCATGTTGTGGTTGTTTCGGGCAAGGTGTGCC | + |
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Preference number: 6 (lower is better) Translates to: TRMSSSSIKSSS*SMLWLFRARCA Trigger: GGCACACCTTGCCCGAAACAACCACAACATGCTGCAGGAGGAAGACTTGATAGATGAAGACGACATTCTTGT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000069507.9 |
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| CDS CCA 72 bp | GTGCAGGTGGAATTTTCTGAACACTCGAACACGAGTTaGCTTGGCTACACACAGACCTTTGCTTTTGGACAG | + |
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Preference number: 6 (lower is better) Translates to: VQVEFSEHSNTS*LGYTQTFAFGQ Trigger: CTGTCCAAAAGCAAAGGTCTGTGTGTAGCCAAGCCAACTCGTGTTCGAGTGTTCAGAAAATTCCACCTGCAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000069507.9 ENSMUST00000173057.2 |
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| CDS CAA 72 bp | TGTGACAGTTGGTGGGATGGGGAAGGAAATGCTGACTaGGCCAATTCCATTGGTGCTCTGTTGAATGTCAAG | + |
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Preference number: 6 (lower is better) Translates to: CDSWWDGEGNAD*ANSIGALLNVK Trigger: CTTGACATTCAACAGAGCACCAATGGAATTGGCCAAGTCAGCATTTCCTTCCCCATCCCACCAACTGTCACA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000069507.9 |
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| CDS CCA 72 bp | GAAGTAAATATCTCCTTCTTGAGTACACGGAGGCCATaGGAGTTCTCCACTGTGATGGTGAGGAAATCAGTG | + |
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Preference number: 6 (lower is better) Translates to: EVNISFLSTRRP*EFSTVMVRKSV Trigger: CACTGATTTCCTCACCATCACAGTGGAGAACTCCCATGGCCTCCGTGTACTCAAGAAGGAGATATTTACTTC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000069507.9 |
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| CDS CCA 72 bp | GAAGAATACTGGCCCAACTTCTCACTGACAGCCTTCTaGAAGTTAACATTTCTCTTTTGCCGACTTTTCTTC | + |
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Preference number: 6 (lower is better) Translates to: EEYWPNFSLTAF*KLTFLFCRLFF Trigger: GAAGAAAAGTCGGCAAAAGAGAAATGTTAACTTCCAGAAGGCTGTCAGTGAGAAGTTGGGCCAGTATTCTTC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000069507.9 |
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