Pregenerated sensors for C3AR1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000040552Ensembl transcript IDs: ENSMUST00000042081.9
Found 80 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | TTAACACTGATGGAAACAAGAAGGCCTGTTAAAACACTGGTCCCATaGGCCAGAGATTCTGAGTCAACACATCTGGGATGGGGCTTGAAA | + |
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Preference number: 1 (lower is better) Translates to: LTLMETRRPVKTLVP*ARDSESTHLGWGLK Trigger: TTTCAAGCCCCATCCCAGATGTGTTGACTCAGAATCTCTGGCCCATGGGACCAGTGTTTTAACAGGCCTTCTTGTTTCCATCAGTGTTAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000042081.9 |
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| 3UTR GCA 90 bp | CACTTACTACACACACGTGCACATACACATGTACACACATGCGTGTaGATGCACATACACAGTGCAGTGTTATTCAGCCATAACAATGAG | + |
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Preference number: 1 (lower is better) Translates to: HLLHTRAHTHVHTCV*MHIHSAVLFSHNNE Trigger: CTCATTGTTATGGCTGAATAACACTGCACTGTGTATGTGCATGCACACGCATGTGTGTACATGTGTATGTGCACGTGTGTGTAGTAAGTG 44% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042081.9 |
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| 3UTR CCA 90 bp | GGAAAGTGTTTATGTGTATCTGTGCTCACTTGCTCACATGAACACTaGAATTATCTCAGGTTGCTTTTAGTGGGTGGCATTTGGCACTGT | + |
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Preference number: 1 (lower is better) Translates to: GKCLCVSVLTCSHEH*NYLRLLLVGGIWHC Trigger: ACAGTGCCAAATGCCACCCACTAAAAGCAACCTGAGATAATTCCAGTGTTCATGTGAGCAAGTGAGCACAGATACACATAAACACTTTCC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042081.9 |
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| 3UTR TCA 90 bp | AGGAGTAGGAAAGTGTTTATGTGTATCTGTGCTCACTTGCTCACATaGACACTGGAATTATCTCAGGTTGCTTTTAGTGGGTGGCATTTG | + |
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Preference number: 1 (lower is better) Translates to: RSRKVFMCICAHLLT*TLELSQVAFSGWHL Trigger: CAAATGCCACCCACTAAAAGCAACCTGAGATAATTCCAGTGTTCATGTGAGCAAGTGAGCACAGATACACATAAACACTTTCCTACTCCT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042081.9 |
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| 3UTR GCA 90 bp | AACACTCCAGGAGTAGGAAAGTGTTTATGTGTATCTGTGCTCACTTaGTCACATGAACACTGGAATTATCTCAGGTTGCTTTTAGTGGGT | + |
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Preference number: 1 (lower is better) Translates to: NTPGVGKCLCVSVLT*SHEHWNYLRLLLVG Trigger: ACCCACTAAAAGCAACCTGAGATAATTCCAGTGTTCATGTGAGCAAGTGAGCACAGATACACATAAACACTTTCCTACTCCTGGAGTGTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042081.9 |
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| 3UTR TCA 90 bp | TCAGCCATAACAATGAGTGAAATACTGGTTTTAACAGAATGGATGTaGATGGACACATACGTATCACATAGTCTCATATATGAGGGCCAG | + |
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Preference number: 1 (lower is better) Translates to: SAITMSEILVLTEWM*MDTYVSHSLIYEGQ Trigger: CTGGCCCTCATATATGAGACTATGTGATACGTATGTGTCCATTCACATCCATTCTGTTAAAACCAGTATTTCACTCATTGTTATGGCTGA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042081.9 |
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| 3UTR CAA 90 bp | CTCCTTGGAGGCAGAGGCACACTGATCTCTGAGTTTCAGGCCAGTTaGGTCTACAGAATGAGTTTCAGGACAGCCAGGGCTACTGTCTTG | + |
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Preference number: 2 (lower is better) Translates to: LLGGRGTLISEFQAS*VYRMSFRTARATVL Trigger: CAAGACAGTAGCCCTGGCTGTCCTGAAACTCATTCTGTAGACCAAACTGGCCTGAAACTCAGAGATCAGTGTGCCTCTGCCTCCAAGGAG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042081.9 |
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| 3UTR-3UTR GCA 90 bp | CGATGGGGCCAGGTACGTACTGCACACCTGCACACGCCTAATCCCAGCAGGAGAGAAAAAGTTATTCATTaGACATGGTGTAGTCAGGGA | + |
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Preference number: 2 (lower is better) Translates to: RWGQVRTAHLHTPNPSRREKVIH*TWCSQG Trigger: TCCCTGACTACACCATGTGCAATGAATAACTTTTTC...TCTCCTGCTGGGATTAGGCGTGTGCAGGTGTGCAGTACGTACCTGGCCCCATCG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000042081.9 |
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| 3UTR-3UTR TCA 90 bp | TTAAGAAGACTCCTTGGAGGCAGAGGCACACTGATCTCTGAGTTTCAGGCCAGTGCTCACTTGCTCACATaGACACTGGAATTATCTCAG | + |
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Preference number: 2 (lower is better) Translates to: LRRLLGGRGTLISEFQASAHLLT*TLELSQ Trigger: CTGAGATAATTCCAGTGTTCATGTGAGCAAGTGAGC...ACTGGCCTGAAACTCAGAGATCAGTGTGCCTCTGCCTCCAAGGAGTCTTCTTAA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042081.9 |
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| 3UTR-3UTR CCA 90 bp | ATTCATAGGGAATATGTAAACCGCTCATACTGGAAAGGCAGAACTGCAGTCTTAAATTGTGTGGTCAGCTaGGGGTGGGGATGGTGGTGG | + |
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Preference number: 2 (lower is better) Translates to: IHREYVNRSYWKGRTAVLNCVVS*GWGWWW Trigger: CCACCACCATCCCCACCCCCAGCTGACCACACAATT...TAAGACTGCAGTTCTGCCTTTCCAGTATGAGCGGTTTACATATTCCCTATGAAT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000042081.9 |
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| 3UTR-3UTR CCA 90 bp | TTAAGAAGACTCCTTGGAGGCAGAGGCACACTGATCTCTGAGTTTCAGGCCAGTGTTATTCATTGCACATaGTGTAGTCAGGGATGGGAA | + |
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Preference number: 2 (lower is better) Translates to: LRRLLGGRGTLISEFQASVIHCT*CSQGWE Trigger: TTCCCATCCCTGACTACACCATGTGCAATGAATAAC...ACTGGCCTGAAACTCAGAGATCAGTGTGCCTCTGCCTCCAAGGAGTCTTCTTAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042081.9 |
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| 3UTR CAA 90 bp | GTATCTGTGCTCACTTGCTCACATGAACACTGGAATTATCTCAGGTaGCTTTTAGTGGGTGGCATTTGGCACTGTGTTCTGTCAAACTCT | + |
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Preference number: 2 (lower is better) Translates to: VSVLTCSHEHWNYLR*LLVGGIWHCVLSNS Trigger: AGAGTTTGACAGAACACAGTGCCAAATGCCACCCACTAAAAGCAACCTGAGATAATTCCAGTGTTCATGTGAGCAAGTGAGCACAGATAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042081.9 |
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| 3UTR-3UTR TCA 90 bp | GATGATGGCACGAAGGCAAGCAAAACCCGACAACAAAGGGAAGAGAAAAATGATCCAGGGCTACTGTCTTaGAAAAACAGTAAACCAAGC | + |
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Preference number: 2 (lower is better) Translates to: DDGTKASKTRQQREEKNDPGLLS*KNSKPS Trigger: GCTTGGTTTACTGTTTTTTCAAGACAGTAGCCCTGG...ATCATTTTTCTCTTCCCTTTGTTGTCGGGTTTTGCTTGCCTTCGTGCCATCATC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000042081.9 |
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| 3UTR-3UTR CCA 90 bp | TTAAGAAGACTCCTTGGAGGCAGAGGCACACTGATCTCTGAGTTTCAGGCCAGTGAAATGGAACATAGATaGCTCTATGAACAAGCAGAA | + |
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Preference number: 2 (lower is better) Translates to: LRRLLGGRGTLISEFQASEMEHR*LYEQAE Trigger: TTCTGCTTGTTCATAGAGCCATCTATGTTCCATTTC...ACTGGCCTGAAACTCAGAGATCAGTGTGCCTCTGCCTCCAAGGAGTCTTCTTAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042081.9 |
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| 3UTR-3UTR CCA 90 bp | GATGATGGCACGAAGGCAAGCAAAACCCGACAACAAAGGGAAGAGAAAAATGATTCAACACATCTGGGATaGGGCTTGAAATTTTGCATC | + |
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Preference number: 2 (lower is better) Translates to: DDGTKASKTRQQREEKNDSTHLG*GLKFCI Trigger: GATGCAAAATTTCAAGCCCCATCCCAGATGTGTTGA...ATCATTTTTCTCTTCCCTTTGTTGTCGGGTTTTGCTTGCCTTCGTGCCATCATC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000042081.9 |
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| 3UTR-3UTR CCA 90 bp | ATTCATAGGGAATATGTAAACCGCTCATACTGGAAAGGCAGAACTGCAGTCTTAAAAACACTGGTCCCATaGGCCAGAGATTCTGAGTCA | + |
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Preference number: 2 (lower is better) Translates to: IHREYVNRSYWKGRTAVLKTLVP*ARDSES Trigger: TGACTCAGAATCTCTGGCCCATGGGACCAGTGTTTT...TAAGACTGCAGTTCTGCCTTTCCAGTATGAGCGGTTTACATATTCCCTATGAAT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000042081.9 |
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| 3UTR-3UTR TCA 90 bp | GATGATGGCACGAAGGCAAGCAAAACCCGACAACAAAGGGAAGAGAAAAATGATAAAAGAGAGTGTGCCTaGCACTTTTGTCATGTAAGA | + |
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Preference number: 2 (lower is better) Translates to: DDGTKASKTRQQREEKNDKRECA*HFCHVR Trigger: TCTTACATGACAAAAGTGTCAGGCACACTCTCTTTT...ATCATTTTTCTCTTCCCTTTGTTGTCGGGTTTTGCTTGCCTTCGTGCCATCATC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000042081.9 |
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| 3UTR-3UTR CCA 90 bp | AATCAAGACAGCCTTTTCTTCCTGTCTACAAAGATCAGCAGCATAAGAGGTGTTTTAGTGGGTGGCATTTaGCACTGTGTTCTGTCAAAC | + |
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Preference number: 2 (lower is better) Translates to: NQDSLFFLSTKISSIRGVLVGGI*HCVLSN Trigger: GTTTGACAGAACACAGTGCCAAATGCCACCCACTAA...AACACCTCTTATGCTGCTGATCTTTGTAGACAGGAAGAAAAGGCTGTCTTGATT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000042081.9 |
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| 3UTR-3UTR CCA 90 bp | ATTCATAGGGAATATGTAAACCGCTCATACTGGAAAGGCAGAACTGCAGTCTTAGTTGCTTTTAGTGGGTaGCATTTGGCACTGTGTTCT | + |
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Preference number: 2 (lower is better) Translates to: IHREYVNRSYWKGRTAVLVAFSG*HLALCS Trigger: AGAACACAGTGCCAAATGCCACCCACTAAAAGCAAC...TAAGACTGCAGTTCTGCCTTTCCAGTATGAGCGGTTTACATATTCCCTATGAAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042081.9 |
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| 3UTR-3UTR TCA 90 bp | ATTCATAGGGAATATGTAAACCGCTCATACTGGAAAGGCAGAACTGCAGTCTTATTAACAGAATGGATGTaGATGGACACATACGTATCA | + |
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Preference number: 2 (lower is better) Translates to: IHREYVNRSYWKGRTAVLLTEWM*MDTYVS Trigger: TGATACGTATGTGTCCATTCACATCCATTCTGTTAA...TAAGACTGCAGTTCTGCCTTTCCAGTATGAGCGGTTTACATATTCCCTATGAAT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042081.9 |
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| 3UTR CCA 72 bp | ACTGCACACCTGCACACGCCTAATCCCAGCAGGAGATaGCAAGGCCCTGTGTGGAAAACAGAAAGGAATTCA | + |
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Preference number: 3 (lower is better) Translates to: TAHLHTPNPSRR*QGPVWKTERNS Trigger: TGAATTCCTTTCTGTTTTCCACACAGGGCCTTGCCATCTCCTGCTGGGATTAGGCGTGTGCAGGTGTGCAGT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042081.9 |
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| 3UTR TCA 72 bp | ACCTGGGAGTCTGAAGCTAGATTGTGTGTGCTACACTaGGATGATGGCACGAAGGCAAGCAAAACCCGACAA | + |
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Preference number: 3 (lower is better) Translates to: TWESEARLCVLH*DDGTKASKTRQ Trigger: TTGTCGGGTTTTGCTTGCCTTCGTGCCATCATCTCAGTGTAGCACACACAATCTAGCTTCAGACTCCCAGGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042081.9 |
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| 3UTR TCA 72 bp | AAGAAGACTCCTTGGAGGCAGAGGCACACTGATCTCTaGGTTTCAGGCCAGTTTGGTCTACAGAATGAGTTT | + |
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Preference number: 3 (lower is better) Translates to: KKTPWRQRHTDL*VSGQFGLQNEF Trigger: AAACTCATTCTGTAGACCAAACTGGCCTGAAACTCAGAGATCAGTGTGCCTCTGCCTCCAAGGAGTCTTCTT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042081.9 |
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| 3UTR GCA 72 bp | AACAAGAGACCTGGGAGTCTGAAGCTAGATTGTGTGTaGTACACTGAGATGATGGCACGAAGGCAAGCAAAA | + |
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Preference number: 3 (lower is better) Translates to: NKRPGSLKLDCV*YTEMMARRQAK Trigger: TTTTGCTTGCCTTCGTGCCATCATCTCAGTGTAGCACACACAATCTAGCTTCAGACTCCCAGGTCTCTTGTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042081.9 |
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| 3UTR TCA 72 bp | AGAATAATGATAAAGAAGAGGCTGGGGGTGAAAGTGTaGATGTTGTGTGCATGGATGGATCAGCCACGTGGA | + |
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Preference number: 3 (lower is better) Translates to: RIMIKKRLGVKV*MLCAWMDQPRG Trigger: TCCACGTGGCTGATCCATCCATGCACACAACATTCACACTTTCACCCCCAGCCTCTTCTTTATCATTATTCT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000042081.9 |
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| 3UTR CCA 72 bp | AAGGAACAGCTACAATTCTTGCAAAGTAGGGAGAGATaGGAACTACTGGGCACTGGAGAAACCACCCTTTTT | + |
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Preference number: 3 (lower is better) Translates to: KEQLQFLQSRER*ELLGTGETTLF Trigger: AAAAAGGGTGGTTTCTCCAGTGCCCAGTAGTTCCCATCTCTCCCTACTTTGCAAGAATTGTAGCTGTTCCTT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042081.9 |
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| 3UTR-3UTR CAA 90 bp | GATGATGGCACGAAGGCAAGCAAAACCCGACAACAAAGGGAAGAGAAAAATGATGAACAGCTACAATTCTaGCAAAGTAGGGAGAGATGG | + |
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Preference number: 3 (lower is better) Translates to: DDGTKASKTRQQREEKNDEQLQF*QSRERW Trigger: CCATCTCTCCCTACTTTGCAAGAATTGTAGCTGTTC...ATCATTTTTCTCTTCCCTTTGTTGTCGGGTTTTGCTTGCCTTCGTGCCATCATC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000042081.9 |
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| 3UTR-3UTR CAA 90 bp | ATTCATAGGGAATATGTAAACCGCTCATACTGGAAAGGCAGAACTGCAGTCTTATTTAGTGGGTGGCATTaGGCACTGTGTTCTGTCAAA | + |
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Preference number: 3 (lower is better) Translates to: IHREYVNRSYWKGRTAVLFSGWH*ALCSVK Trigger: TTTGACAGAACACAGTGCCAAATGCCACCCACTAAA...TAAGACTGCAGTTCTGCCTTTCCAGTATGAGCGGTTTACATATTCCCTATGAAT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042081.9 |
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| 3UTR GCA 72 bp | GGAGTAGGAAAGTGTTTATGTGTATCTGTGCTCACTTaGTCACATGAACACTGGAATTATCTCAGGTTGCTT | + |
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Preference number: 3 (lower is better) Translates to: GVGKCLCVSVLT*SHEHWNYLRLL Trigger: AAGCAACCTGAGATAATTCCAGTGTTCATGTGAGCAAGTGAGCACAGATACACATAAACACTTTCCTACTCC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042081.9 |
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| 3UTR GCA 72 bp | AACCGCTCATACTGGAAAGGCAGAACTGCAGTCTTATaGCCAGAATTACCTCGTAGTAAACAAGATCTTTTA | + |
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Preference number: 3 (lower is better) Translates to: NRSYWKGRTAVL*PELPRSKQDLL Trigger: TAAAAGATCTTGTTTACTACGAGGTAATTCTGGGCATAAGACTGCAGTTCTGCCTTTCCAGTATGAGCGGTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042081.9 |
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| 3UTR CCA 72 bp | TTATGTGTATCTGTGCTCACTTGCTCACATGAACACTaGAATTATCTCAGGTTGCTTTTAGTGGGTGGCATT | + |
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Preference number: 3 (lower is better) Translates to: LCVSVLTCSHEH*NYLRLLLVGGI Trigger: AATGCCACCCACTAAAAGCAACCTGAGATAATTCCAGTGTTCATGTGAGCAAGTGAGCACAGATACACATAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042081.9 |
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| 3UTR-3UTR CAA 90 bp | ATTCATAGGGAATATGTAAACCGCTCATACTGGAAAGGCAGAACTGCAGTCTTATGGAATTATCTCAGGTaGCTTTTAGTGGGTGGCATT | + |
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Preference number: 3 (lower is better) Translates to: IHREYVNRSYWKGRTAVLWNYLR*LLVGGI Trigger: AATGCCACCCACTAAAAGCAACCTGAGATAATTCCA...TAAGACTGCAGTTCTGCCTTTCCAGTATGAGCGGTTTACATATTCCCTATGAAT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042081.9 |
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| 3UTR CCA 72 bp | GCATTTATTCATAGGGAATATGTAAACCGCTCATACTaGAAAGGCAGAACTGCAGTCTTATGCCCAGAATTA | + |
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Preference number: 3 (lower is better) Translates to: AFIHREYVNRSY*KGRTAVLCPEL Trigger: TAATTCTGGGCATAAGACTGCAGTTCTGCCTTTCCAGTATGAGCGGTTTACATATTCCCTATGAATAAATGC 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042081.9 |
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| 3UTR TCA 72 bp | GTTCATCTTAGACATACCTATCTGTACAAACAAGCTTaGCTTTCTAGTGATTTAACACATGGAAAGTATCCA | + |
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Preference number: 3 (lower is better) Translates to: VHLRHTYLYKQA*LSSDLTHGKYP Trigger: TGGATACTTTCCATGTGTTAAATCACTAGAAAGTCAAGCTTGTTTGTACAGATAGGTATGTCTAAGATGAAC 35% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042081.9 |
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| CDS-3UTR TCA 90 bp | CGATGGGGCCAGGTACGTACTGCACACCTGCACACGCCTAATCCCAGCAGGAGAATATGTCCAGTTAGCTaGGCAGTGGAGTTATCAGTA | + |
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Preference number: 4 (lower is better) Translates to: RWGQVRTAHLHTPNPSRRICPVS*AVELSV Trigger: TACTGATAACTCCACTGCTCAGCTAACTGGACATAT...TCTCCTGCTGGGATTAGGCGTGTGCAGGTGTGCAGTACGTACCTGGCCCCATCG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042081.9 |
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| 3UTR CAA 72 bp | GGCAGAGGCACACTGATCTCTGAGTTTCAGGCCAGTTaGGTCTACAGAATGAGTTTCAGGACAGCCAGGGCT | + |
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Preference number: 4 (lower is better) Translates to: GRGTLISEFQAS*VYRMSFRTARA Trigger: AGCCCTGGCTGTCCTGAAACTCATTCTGTAGACCAAACTGGCCTGAAACTCAGAGATCAGTGTGCCTCTGCC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042081.9 |
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| CDS-3UTR TCA 90 bp | CTAAAACACTCCAGGAGTAGGAAAGTGTTTATGTGTATCTGTGCTCACTTGCTCGGAAATCGGCCAGGGTaGGATGGAGGAACCAGACTG | + |
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Preference number: 4 (lower is better) Translates to: LKHSRSRKVFMCICAHLLGNRPG*DGGTRL Trigger: CAGTCTGGTTCCTCCATCTCACCCTGGCCGATTTCC...GAGCAAGTGAGCACAGATACACATAAACACTTTCCTACTCCTGGAGTGTTTTAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042081.9 |
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| CDS-3UTR TCA 90 bp | GATGATGGCACGAAGGCAAGCAAAACCCGACAACAAAGGGAAGAGAAAAATGATCCTTGGAGAATCAGGTaGGCCAAGGAGAAGGGCAAG | + |
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Preference number: 4 (lower is better) Translates to: DDGTKASKTRQQREEKNDPWRIR*AKEKGK Trigger: CTTGCCCTTCTCCTTGGCTCACCTGATTCTCCAAGG...ATCATTTTTCTCTTCCCTTTGTTGTCGGGTTTTGCTTGCCTTCGTGCCATCATC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000042081.9 |
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| CDS-3UTR GCA 90 bp | GATGATGGCACGAAGGCAAGCAAAACCCGACAACAAAGGGAAGAGAAAAATGATACAGCACCAGCCCATTaGCTAGCAGTCCCAATAGAC | + |
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Preference number: 4 (lower is better) Translates to: DDGTKASKTRQQREEKNDTAPAH*LAVPID Trigger: GTCTATTGGGACTGCTAGGCAATGGGCTGGTGCTGT...ATCATTTTTCTCTTCCCTTTGTTGTCGGGTTTTGCTTGCCTTCGTGCCATCATC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000042081.9 |
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| CDS-3UTR CCA 90 bp | TATCTCAGGTTGCTTTTAGTGGGTGGCATTTGGCACTGTGTTCTGTCAAACTCTAGGAATGGCTGTGACTaGAGGGCAGTGGTAACTGTC | + |
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Preference number: 4 (lower is better) Translates to: YLRLLLVGGIWHCVLSNSRNGCD*RAVVTV Trigger: GACAGTTACCACTGCCCTCCAGTCACAGCCATTCCT...AGAGTTTGACAGAACACAGTGCCAAATGCCACCCACTAAAAGCAACCTGAGATA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042081.9 |
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| CDS-3UTR GCA 90 bp | TATCTCAGGTTGCTTTTAGTGGGTGGCATTTGGCACTGTGTTCTGTCAAACTCTCCAAAAGTAATCCCTTaGCTGTACAGAGGAAGGAGC | + |
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Preference number: 4 (lower is better) Translates to: YLRLLLVGGIWHCVLSNSPKVIP*LYRGRS Trigger: GCTCCTTCCTCTGTACAGGCAAGGGATTACTTTTGG...AGAGTTTGACAGAACACAGTGCCAAATGCCACCCACTAAAAGCAACCTGAGATA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000042081.9 |
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| CDS-3UTR TCA 90 bp | TTAAGAAGACTCCTTGGAGGCAGAGGCACACTGATCTCTGAGTTTCAGGCCAGTGTCCCAATAATCATATaGCCTGGAGGAATCAAAATT | + |
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Preference number: 4 (lower is better) Translates to: LRRLLGGRGTLISEFQASVPIII*PGGIKI Trigger: AATTTTGATTCCTCCAGGTCATATGATTATTGGGAC...ACTGGCCTGAAACTCAGAGATCAGTGTGCCTCTGCCTCCAAGGAGTCTTCTTAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042081.9 |
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| CDS-3UTR TCA 90 bp | CTAAAACACTCCAGGAGTAGGAAAGTGTTTATGTGTATCTGTGCTCACTTGCTCTACAGAGGAAGGAGCTaGCCTGTCATTCATATGTCC | + |
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Preference number: 4 (lower is better) Translates to: LKHSRSRKVFMCICAHLLYRGRS*PVIHMS Trigger: GGACATATGAATGACAGGTCAGCTCCTTCCTCTGTA...GAGCAAGTGAGCACAGATACACATAAACACTTTCCTACTCCTGGAGTGTTTTAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042081.9 |
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| CDS-3UTR CCA 90 bp | TTAAGAAGACTCCTTGGAGGCAGAGGCACACTGATCTCTGAGTTTCAGGCCAGTGAGAATAATGATGGATaGGATAAGTTTGCACAGGAA | + |
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Preference number: 4 (lower is better) Translates to: LRRLLGGRGTLISEFQASENNDG*DKFAQE Trigger: TTCCTGTGCAAACTTATCCCATCCATCATTATTCTC...ACTGGCCTGAAACTCAGAGATCAGTGTGCCTCTGCCTCCAAGGAGTCTTCTTAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042081.9 |
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| 3UTR CAA 72 bp | CACCATGGTAAATATCAGAAGGAACAGCTACAATTCTaGCAAAGTAGGGAGAGATGGGAACTACTGGGCACT | + |
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Preference number: 4 (lower is better) Translates to: HHGKYQKEQLQF*QSRERWELLGT Trigger: AGTGCCCAGTAGTTCCCATCTCTCCCTACTTTGCAAGAATTGTAGCTGTTCCTTCTGATATTTACCATGGTG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042081.9 |
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| CDS-3UTR TCA 90 bp | ATTCATAGGGAATATGTAAACCGCTCATACTGGAAAGGCAGAACTGCAGTCTTAGGGAAAAGTTCTGTGTaGGCAGAGAGAAAAGCGTCA | + |
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Preference number: 4 (lower is better) Translates to: IHREYVNRSYWKGRTAVLGKSSV*AERKAS Trigger: TGACGCTTTTCTCTCTGCTCACACAGAACTTTTCCC...TAAGACTGCAGTTCTGCCTTTCCAGTATGAGCGGTTTACATATTCCCTATGAAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000042081.9 |
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| CDS-3UTR CCA 90 bp | ATTCATAGGGAATATGTAAACCGCTCATACTGGAAAGGCAGAACTGCAGTCTTACAGATGCTAAAGCAATaGACATGTGGTCCCAGGACA | + |
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Preference number: 4 (lower is better) Translates to: IHREYVNRSYWKGRTAVLQMLKQ*TCGPRT Trigger: TGTCCTGGGACCACATGTCCATTGCTTTAGCATCTG...TAAGACTGCAGTTCTGCCTTTCCAGTATGAGCGGTTTACATATTCCCTATGAAT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042081.9 |
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| CDS-3UTR TCA 90 bp | ATTCATAGGGAATATGTAAACCGCTCATACTGGAAAGGCAGAACTGCAGTCTTACATACAGGAAAGGGTTaGAGCAACTATTGGCAGATG | + |
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Preference number: 4 (lower is better) Translates to: IHREYVNRSYWKGRTAVLHTGKG*SNYWQM Trigger: CATCTGCCAATAGTTGCTTCAACCCTTTCCTGTATG...TAAGACTGCAGTTCTGCCTTTCCAGTATGAGCGGTTTACATATTCCCTATGAAT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042081.9 |
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| CDS-3UTR TCA 90 bp | TATCTCAGGTTGCTTTTAGTGGGTGGCATTTGGCACTGTGTTCTGTCAAACTCTCATATTGTTTCTTTTTaGAGAGGCTTTGTCTTGGGT | + |
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Preference number: 4 (lower is better) Translates to: YLRLLLVGGIWHCVLSNSHIVSF*RGFVLG Trigger: ACCCAAGACAAAGCCTCTTCAAAAAGAAACAATATG...AGAGTTTGACAGAACACAGTGCCAAATGCCACCCACTAAAAGCAACCTGAGATA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000042081.9 |
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| CDS-3UTR CCA 90 bp | AATCAAGACAGCCTTTTCTTCCTGTCTACAAAGATCAGCAGCATAAGAGGTGTTGTAGGTCAGTTGAATTaGTGTCAGCATCGAAAGACT | + |
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Preference number: 4 (lower is better) Translates to: NQDSLFFLSTKISSIRGVVGQLN*CQHRKT Trigger: AGTCTTTCGATGCTGACACCAATTCAACTGACCTAC...AACACCTCTTATGCTGCTGATCTTTGTAGACAGGAAGAAAAGGCTGTCTTGATT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042081.9 |
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| CDS-3UTR CCA 90 bp | ATTCATAGGGAATATGTAAACCGCTCATACTGGAAAGGCAGAACTGCAGTCTTACAGCGTTCAGTGTATTaGATTTACGATCTTCAACAG | + |
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Preference number: 4 (lower is better) Translates to: IHREYVNRSYWKGRTAVLQRSVY*IYDLQQ Trigger: CTGTTGAAGATCGTAAATCCAATACACTGAACGCTG...TAAGACTGCAGTTCTGCCTTTCCAGTATGAGCGGTTTACATATTCCCTATGAAT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042081.9 |
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| CDS CCA 90 bp | CGGGCACACACATCACAAAGGCTACCACCCAGACACATCCACAGATaGCGAAGGCGGTTCTCACGTTTCGATGATTCTGGCACCAGATTG | + |
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Preference number: 5 (lower is better) Translates to: RAHTSQRLPPRHIHR*RRRFSRFDDSGTRL Trigger: CAATCTGGTGCCAGAATCATCGAAACGTGAGAACCGCCTTCGCCATCTGTGGATGTGTCTGGGTGGTAGCCTTTGTGATGTGTGTGCCCG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042081.9 |
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| CDS-3UTR CAA 90 bp | CGATGGGGCCAGGTACGTACTGCACACCTGCACACGCCTAATCCCAGCAGGAGAGTTTTGTTCCGAGACTaGGTGAAGTTGGTTTTTCGC | + |
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Preference number: 5 (lower is better) Translates to: RWGQVRTAHLHTPNPSRRVLFRD*VKLVFR Trigger: GCGAAAAACCAACTTCACCAAGTCTCGGAACAAAAC...TCTCCTGCTGGGATTAGGCGTGTGCAGGTGTGCAGTACGTACCTGGCCCCATCG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000042081.9 |
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| CDS GCA 90 bp | GAAAAACGGCACCAGGAAGCCCACCACCAGCCTTGTGATGGTTATTaGCATCAGCGGTGTCGGCACATGATTGTCATACGTGAATTGGTC | + |
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Preference number: 5 (lower is better) Translates to: EKRHQEAHHQPCDGY*HQRCRHMIVIRELV Trigger: GACCAATTCACGTATGACAATCATGTGCCGACACCGCTGATGGCAATAACCATCACAAGGCTGGTGGTGGGCTTCCTGGTGCCGTTTTTC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000042081.9 |
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| CDS TCA 90 bp | ACCCAGACACATCCACAGATGGCGAAGGCGGTTCTCACGTTTCGATaGTTCTGGCACCAGATTGGCTTATGTACTATCAGACATCGGTCC | + |
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Preference number: 5 (lower is better) Translates to: TQTHPQMAKAVLTFR*FWHQIGLCTIRHRS Trigger: GGACCGATGTCTGATAGTACATAAGCCAATCTGGTGCCAGAATCATCGAAACGTGAGAACCGCCTTCGCCATCTGTGGATGTGTCTGGGT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042081.9 |
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| CDS CCA 90 bp | GATGGCGAAGGCGGTTCTCACGTTTCGATGATTCTGGCACCAGATTaGCTTATGTACTATCAGACATCGGTCCAGGCTAATGGCAGTAAG | + |
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Preference number: 5 (lower is better) Translates to: DGEGGSHVSMILAPD*LMYYQTSVQANGSK Trigger: CTTACTGCCATTAGCCTGGACCGATGTCTGATAGTACATAAGCCAATCTGGTGCCAGAATCATCGAAACGTGAGAACCGCCTTCGCCATC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042081.9 |
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| CDS TCA 90 bp | AGACAAGTGAGACCAAGAATGACCATGGAGGCAATGTCTTGGGGTTaGAACAGAGGCCGTGAGTGTAGGTCAGTTGAATTGGTGTCAGCA | + |
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Preference number: 5 (lower is better) Translates to: RQVRPRMTMEAMSWG*NRGRECRSVELVSA Trigger: TGCTGACACCAATTCAACTGACCTACACTCACGGCCTCTGTTTCAACCCCAAGACATTGCCTCCATGGTCATTCTTGGTCTCACTTGTCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042081.9 |
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| CDS GCA 90 bp | GTCTTGGGTACAGTTGGTAGAGTGCGTGAGCTCTTCGCTGAAGGCTaGTTCCAGAATGCCCTTTATAGACTGTCTTGCTTTCTTCCTAAA | + |
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Preference number: 5 (lower is better) Translates to: VLGTVGRVRELFAEG*FQNALYRLSCFLPK Trigger: TTTAGGAAGAAAGCAAGACAGTCTATAAAGGGCATTCTGGAAGCAGCCTTCAGCGAAGAGCTCACGCACTCTACCAACTGTACCCAAGAC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042081.9 |
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| CDS CCA 90 bp | AAAGGGTTGAAGCAACTATTGGCAGATGCTAAAGCAATGGACATGTaGTCCCAGGACATCACAGCTTCCCCCAAGGAACTTTCTGGATCA | + |
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Preference number: 5 (lower is better) Translates to: KGLKQLLADAKAMDM*SQDITASPKELSGS Trigger: TGATCCAGAAAGTTCCTTGGGGGAAGCTGTGATGTCCTGGGACCACATGTCCATTGCTTTAGCATCTGCCAATAGTTGCTTCAACCCTTT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000042081.9 |
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| CDS-3UTR CAA 90 bp | GATGATGGCACGAAGGCAAGCAAAACCCGACAACAAAGGGAAGAGAAAAATGATATAGGGCCAGTGTCCTaGGAGAATCAGGTGAGCCAA | + |
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Preference number: 5 (lower is better) Translates to: DDGTKASKTRQQREEKNDIGPVS*ENQVSQ Trigger: TTGGCTCACCTGATTCTCCAAGGACACTGGCCCTAT...ATCATTTTTCTCTTCCCTTTGTTGTCGGGTTTTGCTTGCCTTCGTGCCATCATC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000042081.9 |
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| CDS-3UTR CAA 90 bp | TTAAGAAGACTCCTTGGAGGCAGAGGCACACTGATCTCTGAGTTTCAGGCCAGTAATGGGGTTGTTGGTTaGCTGAATCTAGAGAGAATG | + |
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Preference number: 5 (lower is better) Translates to: LRRLLGGRGTLISEFQASNGVVG*LNLERM Trigger: CATTCTCTCTAGATTCAGCAAACCAACAACCCCATT...ACTGGCCTGAAACTCAGAGATCAGTGTGCCTCTGCCTCCAAGGAGTCTTCTTAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042081.9 |
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| CDS GCA 90 bp | TTGTTTCTTTTTGAAGAGGCTTTGTCTTGGGTACAGTTGGTAGAGTaGGTGAGCTCTTCGCTGAAGGCTGCTTCCAGAATGCCCTTTATA | + |
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Preference number: 5 (lower is better) Translates to: LFLFEEALSWVQLVE*VSSSLKAASRMPFI Trigger: TATAAAGGGCATTCTGGAAGCAGCCTTCAGCGAAGAGCTCACGCACTCTACCAACTGTACCCAAGACAAAGCCTCTTCAAAAAGAAACAA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000042081.9 |
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| CDS CCA 90 bp | CACACATCTGTACTCATATTGTTTCTTTTTGAAGAGGCTTTGTCTTaGGTACAGTTGGTAGAGTGCGTGAGCTCTTCGCTGAAGGCTGCT | + |
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Preference number: 5 (lower is better) Translates to: HTSVLILFLFEEALS*VQLVECVSSSLKAA Trigger: AGCAGCCTTCAGCGAAGAGCTCACGCACTCTACCAACTGTACCCAAGACAAAGCCTCTTCAAAAAGAAACAATATGAGTACAGATGTGTG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000042081.9 |
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| CDS-3UTR CAA 90 bp | TATCTCAGGTTGCTTTTAGTGGGTGGCATTTGGCACTGTGTTCTGTCAAACTCTCGAGACTTGGTGAAGTaGGTTTTTCGCATTCTGAAG | + |
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Preference number: 5 (lower is better) Translates to: YLRLLLVGGIWHCVLSNSRDLVK*VFRILK Trigger: CTTCAGAATGCGAAAAACCAACTTCACCAAGTCTCG...AGAGTTTGACAGAACACAGTGCCAAATGCCACCCACTAAAAGCAACCTGAGATA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000042081.9 |
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| CDS-3UTR CAA 90 bp | GATGATGGCACGAAGGCAAGCAAAACCCGACAACAAAGGGAAGAGAAAAATGATGGGTTGAAGCAACTATaGGCAGATGCTAAAGCAATG | + |
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Preference number: 5 (lower is better) Translates to: DDGTKASKTRQQREEKNDGLKQL*ADAKAM Trigger: CATTGCTTTAGCATCTGCCAATAGTTGCTTCAACCC...ATCATTTTTCTCTTCCCTTTGTTGTCGGGTTTTGCTTGCCTTCGTGCCATCATC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000042081.9 |
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| CDS-3UTR CAA 90 bp | TTAAGAAGACTCCTTGGAGGCAGAGGCACACTGATCTCTGAGTTTCAGGCCAGTTCATATTGTTTCTTTTaGAAGAGGCTTTGTCTTGGG | + |
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Preference number: 5 (lower is better) Translates to: LRRLLGGRGTLISEFQASSYCFF*KRLCLG Trigger: CCCAAGACAAAGCCTCTTCAAAAAGAAACAATATGA...ACTGGCCTGAAACTCAGAGATCAGTGTGCCTCTGCCTCCAAGGAGTCTTCTTAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042081.9 |
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| CDS TCA 90 bp | TGTACAGAGGAAGGAGCTGACCTGTCATTCATATGTCCAGTTAGCTaGGCAGTGGAGTTATCAGTAGAATTGCTTTCTGGTAGACTTAGT | + |
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Preference number: 5 (lower is better) Translates to: CTEEGADLSFICPVS*AVELSVELLSGRLS Trigger: ACTAAGTCTACCAGAAAGCAATTCTACTGATAACTCCACTGCTCAGCTAACTGGACATATGAATGACAGGTCAGCTCCTTCCTCTGTACA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042081.9 |
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| CDS-3UTR CAA 90 bp | CTAAAACACTCCAGGAGTAGGAAAGTGTTTATGTGTATCTGTGCTCACTTGCTCTGTAGGTCAGTTGAATaGGTGTCAGCATCGAAAGAC | + |
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Preference number: 5 (lower is better) Translates to: LKHSRSRKVFMCICAHLLCRSVE*VSASKD Trigger: GTCTTTCGATGCTGACACCAATTCAACTGACCTACA...GAGCAAGTGAGCACAGATACACATAAACACTTTCCTACTCCTGGAGTGTTTTAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042081.9 |
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| CDS-3UTR CAA 90 bp | AATCAAGACAGCCTTTTCTTCCTGTCTACAAAGATCAGCAGCATAAGAGGTGTTCTTTTTGAAGAGGCTTaGTCTTGGGTACAGTTGGTA | + |
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Preference number: 5 (lower is better) Translates to: NQDSLFFLSTKISSIRGVLFEEA*SWVQLV Trigger: TACCAACTGTACCCAAGACAAAGCCTCTTCAAAAAG...AACACCTCTTATGCTGCTGATCTTTGTAGACAGGAAGAAAAGGCTGTCTTGATT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000042081.9 |
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| CDS-3UTR CAA 90 bp | CTAAAACACTCCAGGAGTAGGAAAGTGTTTATGTGTATCTGTGCTCACTTGCTCGAGTTATCAGTAGAATaGCTTTCTGGTAGACTTAGT | + |
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Preference number: 5 (lower is better) Translates to: LKHSRSRKVFMCICAHLLELSVE*LSGRLS Trigger: ACTAAGTCTACCAGAAAGCAATTCTACTGATAACTC...GAGCAAGTGAGCACAGATACACATAAACACTTTCCTACTCCTGGAGTGTTTTAG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042081.9 |
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| CDS GCA 72 bp | TTTGAAGAGGCTTTGTCTTGGGTACAGTTGGTAGAGTaGGTGAGCTCTTCGCTGAAGGCTGCTTCCAGAATG | + |
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Preference number: 6 (lower is better) Translates to: FEEALSWVQLVE*VSSSLKAASRM Trigger: CATTCTGGAAGCAGCCTTCAGCGAAGAGCTCACGCACTCTACCAACTGTACCCAAGACAAAGCCTCTTCAAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042081.9 |
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| CDS TCA 72 bp | AGACCAAGAATGACCATGGAGGCAATGTCTTGGGGTTaGAACAGAGGCCGTGAGTGTAGGTCAGTTGAATTG | + |
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Preference number: 6 (lower is better) Translates to: RPRMTMEAMSWG*NRGRECRSVEL Trigger: CAATTCAACTGACCTACACTCACGGCCTCTGTTTCAACCCCAAGACATTGCCTCCATGGTCATTCTTGGTCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042081.9 |
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| CDS TCA 72 bp | CATCCACAGATGGCGAAGGCGGTTCTCACGTTTCGATaGTTCTGGCACCAGATTGGCTTATGTACTATCAGA | + |
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Preference number: 6 (lower is better) Translates to: HPQMAKAVLTFR*FWHQIGLCTIR Trigger: TCTGATAGTACATAAGCCAATCTGGTGCCAGAATCATCGAAACGTGAGAACCGCCTTCGCCATCTGTGGATG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042081.9 |
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| CDS CCA 72 bp | GGCGGTTCTCACGTTTCGATGATTCTGGCACCAGATTaGCTTATGTACTATCAGACATCGGTCCAGGCTAAT | + |
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Preference number: 6 (lower is better) Translates to: GGSHVSMILAPD*LMYYQTSVQAN Trigger: ATTAGCCTGGACCGATGTCTGATAGTACATAAGCCAATCTGGTGCCAGAATCATCGAAACGTGAGAACCGCC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042081.9 |
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| CDS CCA 72 bp | AAGCAACTATTGGCAGATGCTAAAGCAATGGACATGTaGTCCCAGGACATCACAGCTTCCCCCAAGGAACTT | + |
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Preference number: 6 (lower is better) Translates to: KQLLADAKAMDM*SQDITASPKEL Trigger: AAGTTCCTTGGGGGAAGCTGTGATGTCCTGGGACCACATGTCCATTGCTTTAGCATCTGCCAATAGTTGCTT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000042081.9 |
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| CDS CAA 72 bp | AAGACAGTGACCACAGCCACAGCCACCCGAAAGGTTTaGTTCCGAGACTTGGTGAAGTTGGTTTTTCGCATT | + |
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Preference number: 6 (lower is better) Translates to: KTVTTATATRKV*FRDLVKLVFRI Trigger: AATGCGAAAAACCAACTTCACCAAGTCTCGGAACAAAACCTTTCGGGTGGCTGTGGCTGTGGTCACTGTCTT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000042081.9 |
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| CDS CAA 72 bp | CATCAGCGGTGTCGGCACATGATTGTCATACGTGAATaGGTCAACATAATCCCCCTGGAAATCATAGGGGTA | + |
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Preference number: 6 (lower is better) Translates to: HQRCRHMIVIRE*VNIIPLEIIGV Trigger: TACCCCTATGATTTCCAGGGGGATTATGTTGACCAATTCACGTATGACAATCATGTGCCGACACCGCTGATG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000042081.9 |
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| CDS CAA 72 bp | TTGTTTCTTTTTGAAGAGGCTTTGTCTTGGGTACAGTaGGTAGAGTGCGTGAGCTCTTCGCTGAAGGCTGCT | + |
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Preference number: 6 (lower is better) Translates to: LFLFEEALSWVQ*VECVSSSLKAA Trigger: AGCAGCCTTCAGCGAAGAGCTCACGCACTCTACCAACTGTACCCAAGACAAAGCCTCTTCAAAAAGAAACAA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000042081.9 |
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| CDS CAA 90 bp | GTACTCATATTGTTTCTTTTTGAAGAGGCTTTGTCTTGGGTACAGTaGGTAGAGTGCGTGAGCTCTTCGCTGAAGGCTGCTTCCAGAATG | + |
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Preference number: 6 (lower is better) Translates to: VLILFLFEEALSWVQ*VECVSSSLKAASRM Trigger: CATTCTGGAAGCAGCCTTCAGCGAAGAGCTCACGCACTCTACCAACTGTACCCAAGACAAAGCCTCTTCAAAAAGAAACAATATGAGTAC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000042081.9 |
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| CDS CAA 90 bp | TCATATGACCTGGAGGAATCAAAATTATATCTACATATACTGCGATaGTCCATAATGAACAGATCACGGTATACAAATACGGGCACACAC | + |
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Preference number: 6 (lower is better) Translates to: SYDLEESKLYLHILR*SIMNRSRYTNTGTH Trigger: GTGTGTGCCCGTATTTGTATACCGTGATCTGTTCATTATGGACAATCGCAGTATATGTAGATATAATTTTGATTCCTCCAGGTCATATGA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042081.9 |
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