Pregenerated sensors for C2CD4D (Mus musculus)
Ensembl gene IDs: ENSMUSG00000091648Ensembl transcript IDs: ENSMUST00000169433.3
Found 38 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
Type | Sensor | Details |
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CDS-3UTR GCA 90 bp | GCAGGTGGCAAGGATGAAGTCTGCAGACCCAGTGGAAACCTCCCAAGAAAGCTGTCGCGGCGACGCGTGTaGGGGCTCTCGGGCAGGAAG | + |
Preference number: 4 (lower is better) Translates to: AGGKDEVCRPSGNLPRKLSRRRV*GLSGRK Trigger: CTTCCTGCCCGAGAGCCCGCACACGCGTCGCCGCGA...CAGCTTTCTTGGGAGGTTTCCACTGGGTCTGCAGACTTCATCCTTGCCACCTGC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000169433.3 |
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CDS-3UTR GCA 90 bp | CAGGTGGCAAGGATGAAGTCTGCAGACCCAGTGGAAACCTCCCAAGAAAGCTGTTCGGGGGACAGGGACTaGGGCCTGGGCGTGTGCGGG | + |
Preference number: 4 (lower is better) Translates to: QVARMKSADPVETSQESCSGDRD*GLGVCG Trigger: CCCGCACACGCCCAGGCCGCAGTCCCTGTCCCCCGA...ACAGCTTTCTTGGGAGGTTTCCACTGGGTCTGCAGACTTCATCCTTGCCACCTG 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000169433.3 |
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CDS-3UTR GCA 90 bp | CAGGTGGCAAGGATGAAGTCTGCAGACCCAGTGGAAACCTCCCAAGAAAGCTGTCCAGCAGCACGTCCCTaGGCAGCCCCGCGCCCCTGT | + |
Preference number: 4 (lower is better) Translates to: QVARMKSADPVETSQESCPAARP*AAPRPC Trigger: ACAGGGGCGCGGGGCTGCGCAGGGACGTGCTGCTGG...ACAGCTTTCTTGGGAGGTTTCCACTGGGTCTGCAGACTTCATCCTTGCCACCTG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000169433.3 |
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CDS-3UTR CCA 90 bp | GCAAGGATGAAGTCTGCAGACCCAGTGGAAACCTCCCAAGAAAGCTGTGGTGTCGCTTGGGGACCAGGCTaGGGTGCGCCTGCAGCGCCC | + |
Preference number: 4 (lower is better) Translates to: ARMKSADPVETSQESCGVAWGPG*GAPAAP Trigger: GGGCGCTGCAGGCGCACCCCAGCCTGGTCCCCAAGC...GACACCACAGCTTTCTTGGGAGGTTTCCACTGGGTCTGCAGACTTCATCCTTGC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000169433.3 |
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CDS-3UTR TCA 90 bp | AAGGATGAAGTCTGCAGACCCAGTGGAAACCTCCCAAGAAAGCTGTGGTGTCTACGAGACGTGCAGCCGTaGCTGCGCCGGGGCCAGGCC | + |
Preference number: 4 (lower is better) Translates to: KDEVCRPSGNLPRKLWCLRDVQP*LRRGQA Trigger: GGCCTGGCCCCGGCGCAGTCACGGCTGCACGTCTCG...TAGACACCACAGCTTTCTTGGGAGGTTTCCACTGGGTCTGCAGACTTCATCCTT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000169433.3 |
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CDS-3UTR TCA 90 bp | CAGGTGGCAAGGATGAAGTCTGCAGACCCAGTGGAAACCTCCCAAGAAAGCTGTACCACCCGGCTCCGCTaGGCTCCAGGCCTAACGCGC | + |
Preference number: 4 (lower is better) Translates to: QVARMKSADPVETSQESCTTRLR*APGLTR Trigger: GCGCGTTAGGCCTGGAGCTCAGCGGAGCCGGGTGGT...ACAGCTTTCTTGGGAGGTTTCCACTGGGTCTGCAGACTTCATCCTTGCCACCTG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000169433.3 |
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CDS-3UTR CCA 90 bp | ACATGCCGGGCAGGTGGCAAGGATGAAGTCTGCAGACCCAGTGGAAACCTCCCACAGAGGAAGTCCAGGTaGAAGAGCGGTGGCGCACGG | + |
Preference number: 4 (lower is better) Translates to: TCRAGGKDEVCRPSGNLPQRKSR*KSGGAR Trigger: CCGTGCGCCACCGCTCTTCCACCTGGACTTCCTCTG...TGGGAGGTTTCCACTGGGTCTGCAGACTTCATCCTTGCCACCTGCCCGGCATGT 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000169433.3 |
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CDS-3UTR CCA 90 bp | GATGAAGTCTGCAGACCCAGTGGAAACCTCCCAAGAAAGCTGTGGTGTCTATCAGGCCGTGTCGCTGTCTaGGGCCCGGCAGAGGCGGAG | + |
Preference number: 4 (lower is better) Translates to: DEVCRPSGNLPRKLWCLSGRVAV*GPAEAE Trigger: CTCCGCCTCTGCCGGGCCCCAGACAGCGACACGGCC...TGATAGACACCACAGCTTTCTTGGGAGGTTTCCACTGGGTCTGCAGACTTCATC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000169433.3 |
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CDS-3UTR CCA 90 bp | ATAAATACATGCCGGGCAGGTGGCAAGGATGAAGTCTGCAGACCCAGTGGAAACCCGCCTGGTACTCGGTaGACAGGCGCAGCTGCCCGC | + |
Preference number: 4 (lower is better) Translates to: INTCRAGGKDEVCRPSGNPPGTR*TGAAAR Trigger: GCGGGCAGCTGCGCCTGTCCACCGAGTACCAGGCGG...GTTTCCACTGGGTCTGCAGACTTCATCCTTGCCACCTGCCCGGCATGTATTTAT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000169433.3 |
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CDS-3UTR CCA 90 bp | CGGGCAGGTGGCAAGGATGAAGTCTGCAGACCCAGTGGAAACCTCCCAAGAAAGCGGTATGAAGAACTGTaGGATGCGGTCGGGGGTGAG | + |
Preference number: 4 (lower is better) Translates to: RAGGKDEVCRPSGNLPRKRYEEL*DAVGGE Trigger: CTCACCCCCGACCGCATCCCACAGTTCTTCATACCG...CTTTCTTGGGAGGTTTCCACTGGGTCTGCAGACTTCATCCTTGCCACCTGCCCG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000169433.3 |
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CDS-3UTR TCA 90 bp | CAGGTGGCAAGGATGAAGTCTGCAGACCCAGTGGAAACCTCCCAAGAAAGCTGTGGAGCCGAGGCGGTATaGAGAACTGTGGGATGCGGT | + |
Preference number: 4 (lower is better) Translates to: QVARMKSADPVETSQESCGAEAV*RTVGCG Trigger: ACCGCATCCCACAGTTCTTCATACCGCCTCGGCTCC...ACAGCTTTCTTGGGAGGTTTCCACTGGGTCTGCAGACTTCATCCTTGCCACCTG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000169433.3 |
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CDS-3UTR CCA 90 bp | GATGAAGTCTGCAGACCCAGTGGAAACCTCCCAAGAAAGCTGTGGTGTCTATCATTGGTCGGCCGCAGTTaGCAGCAGAGGAAGTCCAGG | + |
Preference number: 4 (lower is better) Translates to: DEVCRPSGNLPRKLWCLSLVGRS*QQRKSR Trigger: CCTGGACTTCCTCTGCTGCCAACTGCGGCCGACCAA...TGATAGACACCACAGCTTTCTTGGGAGGTTTCCACTGGGTCTGCAGACTTCATC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000169433.3 |
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CDS GCA 90 bp | TGCGGGCTCTCGGGCAGGAAGGCCCAGCCCTCGCGGCCCGCCAGGTaGGGCAGCGAGCAGGCCACCGGGAGGTTCCGGCCGCCCGGGTTG | + |
Preference number: 5 (lower is better) Translates to: CGLSGRKAQPSRPAR*GSEQATGRFRPPGL Trigger: CAACCCGGGCGGCCGGAACCTCCCGGTGGCCTGCTCGCTGCCGCACCTGGCGGGCCGCGAGGGCTGGGCCTTCCTGCCCGAGAGCCCGCA 79% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000169433.3 |
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CDS GCA 90 bp | GCCAGGCCGCGCGGCCCGTGGAACAAGGACTCGCGGCGACGCGTGTaGGGGCTCTCGGGCAGGAAGGCCCAGCCCTCGCGGCCCGCCAGG | + |
Preference number: 5 (lower is better) Translates to: ARPRGPWNKDSRRRV*GLSGRKAQPSRPAR Trigger: CCTGGCGGGCCGCGAGGGCTGGGCCTTCCTGCCCGAGAGCCCGCACACGCGTCGCCGCGAGTCCTTGTTCCACGGGCCGCGCGGCCTGGC 79% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000169433.3 |
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CDS CCA 90 bp | CCGCGGGGCCCCAGGCGCAGCACGCTGTCCTTGGTCGGCCGCAGTTaGCAGCAGAGGAAGTCCAGGTGGAAGAGCGGTGGCGCACGGCGC | + |
Preference number: 5 (lower is better) Translates to: PRGPRRSTLSLVGRS*QQRKSRWKSGGARR Trigger: GCGCCGTGCGCCACCGCTCTTCCACCTGGACTTCCTCTGCTGCCAACTGCGGCCGACCAAGGACAGCGTGCTGCGCCTGGGGCCCCGCGG 73% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000169433.3 |
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CDS CCA 90 bp | GGTCGGCCGCAGTTGGCAGCAGAGGAAGTCCAGGTGGAAGAGCGGTaGCGCACGGCGCGGCGCGTACGGACTAGTGTCCGCCGAGCTGGC | + |
Preference number: 5 (lower is better) Translates to: GRPQLAAEEVQVEER*RTARRVRTSVRRAG Trigger: GCCAGCTCGGCGGACACTAGTCCGTACGCGCCGCGCCGTGCGCCACCGCTCTTCCACCTGGACTTCCTCTGCTGCCAACTGCGGCCGACC 71% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000169433.3 |
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CDS CCA 90 bp | ACGCTGTCCTTGGTCGGCCGCAGTTGGCAGCAGAGGAAGTCCAGGTaGAAGAGCGGTGGCGCACGGCGCGGCGCGTACGGACTAGTGTCC | + |
Preference number: 5 (lower is better) Translates to: TLSLVGRSWQQRKSR*KSGGARRGAYGLVS Trigger: GGACACTAGTCCGTACGCGCCGCGCCGTGCGCCACCGCTCTTCCACCTGGACTTCCTCTGCTGCCAACTGCGGCCGACCAAGGACAGCGT 68% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000169433.3 |
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CDS CCA 90 bp | CTCGGCGCCTCTTGGGTCCCGGAGCCGAGGCGGTATGAAGAACTGTaGGATGCGGTCGGGGGTGAGGACATTAGGGTTGCAGCGCGAGGG | + |
Preference number: 5 (lower is better) Translates to: LGASWVPEPRRYEEL*DAVGGEDIRVAARG Trigger: CCCTCGCGCTGCAACCCTAATGTCCTCACCCCCGACCGCATCCCACAGTTCTTCATACCGCCTCGGCTCCGGGACCCAAGAGGCGCCGAG 67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000169433.3 |
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CDS-3UTR CAA 90 bp | GCAGGTGGCAAGGATGAAGTCTGCAGACCCAGTGGAAACCTCCCAAGAAAGCTGTTCCGGCCGCCCGGGTaGCGGTCCACCCTGCCCTCG | + |
Preference number: 5 (lower is better) Translates to: AGGKDEVCRPSGNLPRKLFRPPG*RSTLPS Trigger: CGAGGGCAGGGTGGACCGCAACCCGGGCGGCCGGAA...CAGCTTTCTTGGGAGGTTTCCACTGGGTCTGCAGACTTCATCCTTGCCACCTGC 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000169433.3 |
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CDS-3UTR CAA 90 bp | GCAGGTGGCAAGGATGAAGTCTGCAGACCCAGTGGAAACCTCCCAAGAAAGCTGGTGAGGACATTAGGGTaGCAGCGCGAGGGCGAGCCC | + |
Preference number: 5 (lower is better) Translates to: AGGKDEVCRPSGNLPRKLVRTLG*QREGEP Trigger: GGGCTCGCCCTCGCGCTGCAACCCTAATGTCCTCAC...CAGCTTTCTTGGGAGGTTTCCACTGGGTCTGCAGACTTCATCCTTGCCACCTGC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000169433.3 |
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CDS-3UTR CAA 90 bp | TGCCGGGCAGGTGGCAAGGATGAAGTCTGCAGACCCAGTGGAAACCTCCCAAGATCGTTGAAGATAGGGTaGCAGCTGCTCTGGACCACC | + |
Preference number: 5 (lower is better) Translates to: CRAGGKDEVCRPSGNLPRSLKIG*QLLWTT Trigger: GGTGGTCCAGAGCAGCTGCAACCCTATCTTCAACGA...TCTTGGGAGGTTTCCACTGGGTCTGCAGACTTCATCCTTGCCACCTGCCCGGCA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000169433.3 |
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CDS-3UTR CAA 90 bp | ATGAAGTCTGCAGACCCAGTGGAAACCTCCCAAGAAAGCTGTGGTGTCTATCAGCTTGGTCGGCCGCAGTaGGCAGCAGAGGAAGTCCAG | + |
Preference number: 5 (lower is better) Translates to: MKSADPVETSQESCGVYQLGRPQ*AAEEVQ Trigger: CTGGACTTCCTCTGCTGCCAACTGCGGCCGACCAAG...CTGATAGACACCACAGCTTTCTTGGGAGGTTTCCACTGGGTCTGCAGACTTCAT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000169433.3 |
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CDS GCA 72 bp | CCGGGAGGTTCCGGCCGCCCGGGTTGCGGTCCACCCTaGCCTCGGCGCCTCTTGGGTCCCGGAGCCGAGGCG | + |
Preference number: 6 (lower is better) Translates to: PGGSGRPGCGPP*PRRLLGPGAEA Trigger: CGCCTCGGCTCCGGGACCCAAGAGGCGCCGAGGGCAGGGTGGACCGCAACCCGGGCGGCCGGAACCTCCCGG 79% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000169433.3 |
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CDS CCA 72 bp | GGGCGAGGAGTCCGGCGACGAGGCCGTGTCGCTGTCTaGGGCCCGGCAGAGGCGGAGGTCGGGGGCCGAGAC | + |
Preference number: 6 (lower is better) Translates to: GRGVRRRGRVAV*GPAEAEVGGRD Trigger: GTCTCGGCCCCCGACCTCCGCCTCTGCCGGGCCCCAGACAGCGACACGGCCTCGTCGCCGGACTCCTCGCCC 78% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000169433.3 |
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CDS CAA 90 bp | AGGTGCGGCAGCGAGCAGGCCACCGGGAGGTTCCGGCCGCCCGGGTaGCGGTCCACCCTGCCCTCGGCGCCTCTTGGGTCCCGGAGCCGA | + |
Preference number: 6 (lower is better) Translates to: RCGSEQATGRFRPPG*RSTLPSAPLGSRSR Trigger: TCGGCTCCGGGACCCAAGAGGCGCCGAGGGCAGGGTGGACCGCAACCCGGGCGGCCGGAACCTCCCGGTGGCCTGCTCGCTGCCGCACCT 77% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000169433.3 |
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CDS GCA 72 bp | CGCGGCCCGTGGAACAAGGACTCGCGGCGACGCGTGTaGGGGCTCTCGGGCAGGAAGGCCCAGCCCTCGCGG | + |
Preference number: 6 (lower is better) Translates to: RGPWNKDSRRRV*GLSGRKAQPSR Trigger: CCGCGAGGGCTGGGCCTTCCTGCCCGAGAGCCCGCACACGCGTCGCCGCGAGTCCTTGTTCCACGGGCCGCG 76% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000169433.3 |
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CDS CAA 72 bp | AGCGAGCAGGCCACCGGGAGGTTCCGGCCGCCCGGGTaGCGGTCCACCCTGCCCTCGGCGCCTCTTGGGTCC | + |
Preference number: 6 (lower is better) Translates to: SEQATGRFRPPG*RSTLPSAPLGS Trigger: GGACCCAAGAGGCGCCGAGGGCAGGGTGGACCGCAACCCGGGCGGCCGGAACCTCCCGGTGGCCTGCTCGCT 76% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000169433.3 |
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CDS CCA 72 bp | CGTCCCTGCGCAGCCCCGCGCCCCTGTCCAGCACTTTaGCCCTCAGACTGCGGACGGCCAGATCCGGCGGGC | + |
Preference number: 6 (lower is better) Translates to: RPCAAPRPCPAL*PSDCGRPDPAG Trigger: GCCCGCCGGATCTGGCCGTCCGCAGTCTGAGGGCCAAAGTGCTGGACAGGGGCGCGGGGCTGCGCAGGGACG 75% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000169433.3 |
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CDS CCA 72 bp | GCCCGCCGCGGGGCCCCAGGCGCAGCACGCTGTCCTTaGTCGGCCGCAGTTGGCAGCAGAGGAAGTCCAGGT | + |
Preference number: 6 (lower is better) Translates to: ARRGAPGAARCP*SAAVGSRGSPG Trigger: ACCTGGACTTCCTCTGCTGCCAACTGCGGCCGACCAAGGACAGCGTGCTGCGCCTGGGGCCCCGCGGCGGGC 74% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000169433.3 |
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CDS CAA 72 bp | TGCCCGCCGCGGGGCCCCAGGCGCAGCACGCTGTCCTaGGTCGGCCGCAGTTGGCAGCAGAGGAAGTCCAGG | + |
Preference number: 6 (lower is better) Translates to: CPPRGPRRSTLS*VGRSWQQRKSR Trigger: CCTGGACTTCCTCTGCTGCCAACTGCGGCCGACCAAGGACAGCGTGCTGCGCCTGGGGCCCCGCGGCGGGCA 74% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000169433.3 |
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CDS CAA 90 bp | GCCGCGGGGCCCCAGGCGCAGCACGCTGTCCTTGGTCGGCCGCAGTaGGCAGCAGAGGAAGTCCAGGTGGAAGAGCGGTGGCGCACGGCG | + |
Preference number: 6 (lower is better) Translates to: AAGPQAQHAVLGRPQ*AAEEVQVEERWRTA Trigger: CGCCGTGCGCCACCGCTCTTCCACCTGGACTTCCTCTGCTGCCAACTGCGGCCGACCAAGGACAGCGTGCTGCGCCTGGGGCCCCGCGGC 73% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000169433.3 |
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CDS CCA 72 bp | GCCCGGGTTGCGGTCCACCCTGCCCTCGGCGCCTCTTaGGTCCCGGAGCCGAGGCGGTATGAAGAACTGTGG | + |
Preference number: 6 (lower is better) Translates to: ARVAVHPALGAS*VPEPRRYEELW Trigger: CCACAGTTCTTCATACCGCCTCGGCTCCGGGACCCAAGAGGCGCCGAGGGCAGGGTGGACCGCAACCCGGGC 71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000169433.3 |
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CDS CCA 72 bp | TTGGTCGGCCGCAGTTGGCAGCAGAGGAAGTCCAGGTaGAAGAGCGGTGGCGCACGGCGCGGCGCGTACGGA | + |
Preference number: 6 (lower is better) Translates to: LVGRSWQQRKSR*KSGGARRGAYG Trigger: TCCGTACGCGCCGCGCCGTGCGCCACCGCTCTTCCACCTGGACTTCCTCTGCTGCCAACTGCGGCCGACCAA 69% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000169433.3 |
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CDS CAA 72 bp | AACTGTGGGATGCGGTCGGGGGTGAGGACATTAGGGTaGCAGCGCGAGGGCGAGCCCCGGGCCTGGCGCTTG | + |
Preference number: 6 (lower is better) Translates to: NCGMRSGVRTLG*QREGEPRAWRL Trigger: CAAGCGCCAGGCCCGGGGCTCGCCCTCGCGCTGCAACCCTAATGTCCTCACCCCCGACCGCATCCCACAGTT 69% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000169433.3 |
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CDS TCA 72 bp | ATAGGGTTGCAGCTGCTCTGGACCACCCGGCTCCGCTaGGCTCCAGGCCTAACGCGCGGCTGCAGCCGCAGA | + |
Preference number: 6 (lower is better) Translates to: IGLQLLWTTRLR*APGLTRGCSRR Trigger: TCTGCGGCTGCAGCCGCGCGTTAGGCCTGGAGCTCAGCGGAGCCGGGTGGTCCAGAGCAGCTGCAACCCTAT 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000169433.3 |
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CDS CCA 72 bp | CCCAGGCGCAGCACGCTGTCCTTGGTCGGCCGCAGTTaGCAGCAGAGGAAGTCCAGGTGGAAGAGCGGTGGC | + |
Preference number: 6 (lower is better) Translates to: PRRSTLSLVGRS*QQRKSRWKSGG Trigger: GCCACCGCTCTTCCACCTGGACTTCCTCTGCTGCCAACTGCGGCCGACCAAGGACAGCGTGCTGCGCCTGGG 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000169433.3 |
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CDS CAA 72 bp | TCCGGCGGGCGCAGCCCCTCGAAGAAGAAGTCTTCGTaGAAGATAGGGTTGCAGCTGCTCTGGACCACCCGG | + |
Preference number: 6 (lower is better) Translates to: SGGRSPSKKKSS*KIGLQLLWTTR Trigger: CCGGGTGGTCCAGAGCAGCTGCAACCCTATCTTCAACGAAGACTTCTTCTTCGAGGGGCTGCGCCCGCCGGA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000169433.3 |
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CDS CCA 72 bp | TCTTGGGTCCCGGAGCCGAGGCGGTATGAAGAACTGTaGGATGCGGTCGGGGGTGAGGACATTAGGGTTGCA | + |
Preference number: 6 (lower is better) Translates to: SWVPEPRRYEEL*DAVGGEDIRVA Trigger: TGCAACCCTAATGTCCTCACCCCCGACCGCATCCCACAGTTCTTCATACCGCCTCGGCTCCGGGACCCAAGA 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000169433.3 |