RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for C2CD4D (Mus musculus)

Ensembl gene IDs: ENSMUSG00000091648

Ensembl transcript IDs: ENSMUST00000169433.3

Found 38 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
CDS-3UTR GCA 90 bp GCAGGTGGCAAGGATGAAGTCTGCAGACCCAGTGGAAACCTCCCAAGAAAGCTGTCGCGGCGACGCGTGTaGGGGCTCTCGGGCAGGAAG +
Preference number: 4 (lower is better)
Translates to: AGGKDEVCRPSGNLPRKLSRRRV*GLSGRK
Trigger: CTTCCTGCCCGAGAGCCCGCACACGCGTCGCCGCGA...CAGCTTTCTTGGGAGGTTTCCACTGGGTCTGCAGACTTCATCCTTGCCACCTGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000169433.3
CDS-3UTR GCA 90 bp CAGGTGGCAAGGATGAAGTCTGCAGACCCAGTGGAAACCTCCCAAGAAAGCTGTTCGGGGGACAGGGACTaGGGCCTGGGCGTGTGCGGG +
Preference number: 4 (lower is better)
Translates to: QVARMKSADPVETSQESCSGDRD*GLGVCG
Trigger: CCCGCACACGCCCAGGCCGCAGTCCCTGTCCCCCGA...ACAGCTTTCTTGGGAGGTTTCCACTGGGTCTGCAGACTTCATCCTTGCCACCTG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000169433.3
CDS-3UTR GCA 90 bp CAGGTGGCAAGGATGAAGTCTGCAGACCCAGTGGAAACCTCCCAAGAAAGCTGTCCAGCAGCACGTCCCTaGGCAGCCCCGCGCCCCTGT +
Preference number: 4 (lower is better)
Translates to: QVARMKSADPVETSQESCPAARP*AAPRPC
Trigger: ACAGGGGCGCGGGGCTGCGCAGGGACGTGCTGCTGG...ACAGCTTTCTTGGGAGGTTTCCACTGGGTCTGCAGACTTCATCCTTGCCACCTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000169433.3
CDS-3UTR CCA 90 bp GCAAGGATGAAGTCTGCAGACCCAGTGGAAACCTCCCAAGAAAGCTGTGGTGTCGCTTGGGGACCAGGCTaGGGTGCGCCTGCAGCGCCC +
Preference number: 4 (lower is better)
Translates to: ARMKSADPVETSQESCGVAWGPG*GAPAAP
Trigger: GGGCGCTGCAGGCGCACCCCAGCCTGGTCCCCAAGC...GACACCACAGCTTTCTTGGGAGGTTTCCACTGGGTCTGCAGACTTCATCCTTGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000169433.3
CDS-3UTR TCA 90 bp AAGGATGAAGTCTGCAGACCCAGTGGAAACCTCCCAAGAAAGCTGTGGTGTCTACGAGACGTGCAGCCGTaGCTGCGCCGGGGCCAGGCC +
Preference number: 4 (lower is better)
Translates to: KDEVCRPSGNLPRKLWCLRDVQP*LRRGQA
Trigger: GGCCTGGCCCCGGCGCAGTCACGGCTGCACGTCTCG...TAGACACCACAGCTTTCTTGGGAGGTTTCCACTGGGTCTGCAGACTTCATCCTT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000169433.3
CDS-3UTR TCA 90 bp CAGGTGGCAAGGATGAAGTCTGCAGACCCAGTGGAAACCTCCCAAGAAAGCTGTACCACCCGGCTCCGCTaGGCTCCAGGCCTAACGCGC +
Preference number: 4 (lower is better)
Translates to: QVARMKSADPVETSQESCTTRLR*APGLTR
Trigger: GCGCGTTAGGCCTGGAGCTCAGCGGAGCCGGGTGGT...ACAGCTTTCTTGGGAGGTTTCCACTGGGTCTGCAGACTTCATCCTTGCCACCTG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000169433.3
CDS-3UTR CCA 90 bp ACATGCCGGGCAGGTGGCAAGGATGAAGTCTGCAGACCCAGTGGAAACCTCCCACAGAGGAAGTCCAGGTaGAAGAGCGGTGGCGCACGG +
Preference number: 4 (lower is better)
Translates to: TCRAGGKDEVCRPSGNLPQRKSR*KSGGAR
Trigger: CCGTGCGCCACCGCTCTTCCACCTGGACTTCCTCTG...TGGGAGGTTTCCACTGGGTCTGCAGACTTCATCCTTGCCACCTGCCCGGCATGT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000169433.3
CDS-3UTR CCA 90 bp GATGAAGTCTGCAGACCCAGTGGAAACCTCCCAAGAAAGCTGTGGTGTCTATCAGGCCGTGTCGCTGTCTaGGGCCCGGCAGAGGCGGAG +
Preference number: 4 (lower is better)
Translates to: DEVCRPSGNLPRKLWCLSGRVAV*GPAEAE
Trigger: CTCCGCCTCTGCCGGGCCCCAGACAGCGACACGGCC...TGATAGACACCACAGCTTTCTTGGGAGGTTTCCACTGGGTCTGCAGACTTCATC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000169433.3
CDS-3UTR CCA 90 bp ATAAATACATGCCGGGCAGGTGGCAAGGATGAAGTCTGCAGACCCAGTGGAAACCCGCCTGGTACTCGGTaGACAGGCGCAGCTGCCCGC +
Preference number: 4 (lower is better)
Translates to: INTCRAGGKDEVCRPSGNPPGTR*TGAAAR
Trigger: GCGGGCAGCTGCGCCTGTCCACCGAGTACCAGGCGG...GTTTCCACTGGGTCTGCAGACTTCATCCTTGCCACCTGCCCGGCATGTATTTAT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000169433.3
CDS-3UTR CCA 90 bp CGGGCAGGTGGCAAGGATGAAGTCTGCAGACCCAGTGGAAACCTCCCAAGAAAGCGGTATGAAGAACTGTaGGATGCGGTCGGGGGTGAG +
Preference number: 4 (lower is better)
Translates to: RAGGKDEVCRPSGNLPRKRYEEL*DAVGGE
Trigger: CTCACCCCCGACCGCATCCCACAGTTCTTCATACCG...CTTTCTTGGGAGGTTTCCACTGGGTCTGCAGACTTCATCCTTGCCACCTGCCCG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000169433.3
CDS-3UTR TCA 90 bp CAGGTGGCAAGGATGAAGTCTGCAGACCCAGTGGAAACCTCCCAAGAAAGCTGTGGAGCCGAGGCGGTATaGAGAACTGTGGGATGCGGT +
Preference number: 4 (lower is better)
Translates to: QVARMKSADPVETSQESCGAEAV*RTVGCG
Trigger: ACCGCATCCCACAGTTCTTCATACCGCCTCGGCTCC...ACAGCTTTCTTGGGAGGTTTCCACTGGGTCTGCAGACTTCATCCTTGCCACCTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000169433.3
CDS-3UTR CCA 90 bp GATGAAGTCTGCAGACCCAGTGGAAACCTCCCAAGAAAGCTGTGGTGTCTATCATTGGTCGGCCGCAGTTaGCAGCAGAGGAAGTCCAGG +
Preference number: 4 (lower is better)
Translates to: DEVCRPSGNLPRKLWCLSLVGRS*QQRKSR
Trigger: CCTGGACTTCCTCTGCTGCCAACTGCGGCCGACCAA...TGATAGACACCACAGCTTTCTTGGGAGGTTTCCACTGGGTCTGCAGACTTCATC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000169433.3
CDS GCA 90 bp TGCGGGCTCTCGGGCAGGAAGGCCCAGCCCTCGCGGCCCGCCAGGTaGGGCAGCGAGCAGGCCACCGGGAGGTTCCGGCCGCCCGGGTTG +
Preference number: 5 (lower is better)
Translates to: CGLSGRKAQPSRPAR*GSEQATGRFRPPGL
Trigger: CAACCCGGGCGGCCGGAACCTCCCGGTGGCCTGCTCGCTGCCGCACCTGGCGGGCCGCGAGGGCTGGGCCTTCCTGCCCGAGAGCCCGCA
79% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000169433.3
CDS GCA 90 bp GCCAGGCCGCGCGGCCCGTGGAACAAGGACTCGCGGCGACGCGTGTaGGGGCTCTCGGGCAGGAAGGCCCAGCCCTCGCGGCCCGCCAGG +
Preference number: 5 (lower is better)
Translates to: ARPRGPWNKDSRRRV*GLSGRKAQPSRPAR
Trigger: CCTGGCGGGCCGCGAGGGCTGGGCCTTCCTGCCCGAGAGCCCGCACACGCGTCGCCGCGAGTCCTTGTTCCACGGGCCGCGCGGCCTGGC
79% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000169433.3
CDS CCA 90 bp CCGCGGGGCCCCAGGCGCAGCACGCTGTCCTTGGTCGGCCGCAGTTaGCAGCAGAGGAAGTCCAGGTGGAAGAGCGGTGGCGCACGGCGC +
Preference number: 5 (lower is better)
Translates to: PRGPRRSTLSLVGRS*QQRKSRWKSGGARR
Trigger: GCGCCGTGCGCCACCGCTCTTCCACCTGGACTTCCTCTGCTGCCAACTGCGGCCGACCAAGGACAGCGTGCTGCGCCTGGGGCCCCGCGG
73% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000169433.3
CDS CCA 90 bp GGTCGGCCGCAGTTGGCAGCAGAGGAAGTCCAGGTGGAAGAGCGGTaGCGCACGGCGCGGCGCGTACGGACTAGTGTCCGCCGAGCTGGC +
Preference number: 5 (lower is better)
Translates to: GRPQLAAEEVQVEER*RTARRVRTSVRRAG
Trigger: GCCAGCTCGGCGGACACTAGTCCGTACGCGCCGCGCCGTGCGCCACCGCTCTTCCACCTGGACTTCCTCTGCTGCCAACTGCGGCCGACC
71% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000169433.3
CDS CCA 90 bp ACGCTGTCCTTGGTCGGCCGCAGTTGGCAGCAGAGGAAGTCCAGGTaGAAGAGCGGTGGCGCACGGCGCGGCGCGTACGGACTAGTGTCC +
Preference number: 5 (lower is better)
Translates to: TLSLVGRSWQQRKSR*KSGGARRGAYGLVS
Trigger: GGACACTAGTCCGTACGCGCCGCGCCGTGCGCCACCGCTCTTCCACCTGGACTTCCTCTGCTGCCAACTGCGGCCGACCAAGGACAGCGT
68% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000169433.3
CDS CCA 90 bp CTCGGCGCCTCTTGGGTCCCGGAGCCGAGGCGGTATGAAGAACTGTaGGATGCGGTCGGGGGTGAGGACATTAGGGTTGCAGCGCGAGGG +
Preference number: 5 (lower is better)
Translates to: LGASWVPEPRRYEEL*DAVGGEDIRVAARG
Trigger: CCCTCGCGCTGCAACCCTAATGTCCTCACCCCCGACCGCATCCCACAGTTCTTCATACCGCCTCGGCTCCGGGACCCAAGAGGCGCCGAG
67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000169433.3
CDS-3UTR CAA 90 bp GCAGGTGGCAAGGATGAAGTCTGCAGACCCAGTGGAAACCTCCCAAGAAAGCTGTTCCGGCCGCCCGGGTaGCGGTCCACCCTGCCCTCG +
Preference number: 5 (lower is better)
Translates to: AGGKDEVCRPSGNLPRKLFRPPG*RSTLPS
Trigger: CGAGGGCAGGGTGGACCGCAACCCGGGCGGCCGGAA...CAGCTTTCTTGGGAGGTTTCCACTGGGTCTGCAGACTTCATCCTTGCCACCTGC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000169433.3
CDS-3UTR CAA 90 bp GCAGGTGGCAAGGATGAAGTCTGCAGACCCAGTGGAAACCTCCCAAGAAAGCTGGTGAGGACATTAGGGTaGCAGCGCGAGGGCGAGCCC +
Preference number: 5 (lower is better)
Translates to: AGGKDEVCRPSGNLPRKLVRTLG*QREGEP
Trigger: GGGCTCGCCCTCGCGCTGCAACCCTAATGTCCTCAC...CAGCTTTCTTGGGAGGTTTCCACTGGGTCTGCAGACTTCATCCTTGCCACCTGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000169433.3
CDS-3UTR CAA 90 bp TGCCGGGCAGGTGGCAAGGATGAAGTCTGCAGACCCAGTGGAAACCTCCCAAGATCGTTGAAGATAGGGTaGCAGCTGCTCTGGACCACC +
Preference number: 5 (lower is better)
Translates to: CRAGGKDEVCRPSGNLPRSLKIG*QLLWTT
Trigger: GGTGGTCCAGAGCAGCTGCAACCCTATCTTCAACGA...TCTTGGGAGGTTTCCACTGGGTCTGCAGACTTCATCCTTGCCACCTGCCCGGCA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000169433.3
CDS-3UTR CAA 90 bp ATGAAGTCTGCAGACCCAGTGGAAACCTCCCAAGAAAGCTGTGGTGTCTATCAGCTTGGTCGGCCGCAGTaGGCAGCAGAGGAAGTCCAG +
Preference number: 5 (lower is better)
Translates to: MKSADPVETSQESCGVYQLGRPQ*AAEEVQ
Trigger: CTGGACTTCCTCTGCTGCCAACTGCGGCCGACCAAG...CTGATAGACACCACAGCTTTCTTGGGAGGTTTCCACTGGGTCTGCAGACTTCAT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000169433.3
CDS GCA 72 bp CCGGGAGGTTCCGGCCGCCCGGGTTGCGGTCCACCCTaGCCTCGGCGCCTCTTGGGTCCCGGAGCCGAGGCG +
Preference number: 6 (lower is better)
Translates to: PGGSGRPGCGPP*PRRLLGPGAEA
Trigger: CGCCTCGGCTCCGGGACCCAAGAGGCGCCGAGGGCAGGGTGGACCGCAACCCGGGCGGCCGGAACCTCCCGG
79% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000169433.3
CDS CCA 72 bp GGGCGAGGAGTCCGGCGACGAGGCCGTGTCGCTGTCTaGGGCCCGGCAGAGGCGGAGGTCGGGGGCCGAGAC +
Preference number: 6 (lower is better)
Translates to: GRGVRRRGRVAV*GPAEAEVGGRD
Trigger: GTCTCGGCCCCCGACCTCCGCCTCTGCCGGGCCCCAGACAGCGACACGGCCTCGTCGCCGGACTCCTCGCCC
78% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000169433.3
CDS CAA 90 bp AGGTGCGGCAGCGAGCAGGCCACCGGGAGGTTCCGGCCGCCCGGGTaGCGGTCCACCCTGCCCTCGGCGCCTCTTGGGTCCCGGAGCCGA +
Preference number: 6 (lower is better)
Translates to: RCGSEQATGRFRPPG*RSTLPSAPLGSRSR
Trigger: TCGGCTCCGGGACCCAAGAGGCGCCGAGGGCAGGGTGGACCGCAACCCGGGCGGCCGGAACCTCCCGGTGGCCTGCTCGCTGCCGCACCT
77% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000169433.3
CDS GCA 72 bp CGCGGCCCGTGGAACAAGGACTCGCGGCGACGCGTGTaGGGGCTCTCGGGCAGGAAGGCCCAGCCCTCGCGG +
Preference number: 6 (lower is better)
Translates to: RGPWNKDSRRRV*GLSGRKAQPSR
Trigger: CCGCGAGGGCTGGGCCTTCCTGCCCGAGAGCCCGCACACGCGTCGCCGCGAGTCCTTGTTCCACGGGCCGCG
76% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000169433.3
CDS CAA 72 bp AGCGAGCAGGCCACCGGGAGGTTCCGGCCGCCCGGGTaGCGGTCCACCCTGCCCTCGGCGCCTCTTGGGTCC +
Preference number: 6 (lower is better)
Translates to: SEQATGRFRPPG*RSTLPSAPLGS
Trigger: GGACCCAAGAGGCGCCGAGGGCAGGGTGGACCGCAACCCGGGCGGCCGGAACCTCCCGGTGGCCTGCTCGCT
76% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000169433.3
CDS CCA 72 bp CGTCCCTGCGCAGCCCCGCGCCCCTGTCCAGCACTTTaGCCCTCAGACTGCGGACGGCCAGATCCGGCGGGC +
Preference number: 6 (lower is better)
Translates to: RPCAAPRPCPAL*PSDCGRPDPAG
Trigger: GCCCGCCGGATCTGGCCGTCCGCAGTCTGAGGGCCAAAGTGCTGGACAGGGGCGCGGGGCTGCGCAGGGACG
75% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000169433.3
CDS CCA 72 bp GCCCGCCGCGGGGCCCCAGGCGCAGCACGCTGTCCTTaGTCGGCCGCAGTTGGCAGCAGAGGAAGTCCAGGT +
Preference number: 6 (lower is better)
Translates to: ARRGAPGAARCP*SAAVGSRGSPG
Trigger: ACCTGGACTTCCTCTGCTGCCAACTGCGGCCGACCAAGGACAGCGTGCTGCGCCTGGGGCCCCGCGGCGGGC
74% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000169433.3
CDS CAA 72 bp TGCCCGCCGCGGGGCCCCAGGCGCAGCACGCTGTCCTaGGTCGGCCGCAGTTGGCAGCAGAGGAAGTCCAGG +
Preference number: 6 (lower is better)
Translates to: CPPRGPRRSTLS*VGRSWQQRKSR
Trigger: CCTGGACTTCCTCTGCTGCCAACTGCGGCCGACCAAGGACAGCGTGCTGCGCCTGGGGCCCCGCGGCGGGCA
74% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000169433.3
CDS CAA 90 bp GCCGCGGGGCCCCAGGCGCAGCACGCTGTCCTTGGTCGGCCGCAGTaGGCAGCAGAGGAAGTCCAGGTGGAAGAGCGGTGGCGCACGGCG +
Preference number: 6 (lower is better)
Translates to: AAGPQAQHAVLGRPQ*AAEEVQVEERWRTA
Trigger: CGCCGTGCGCCACCGCTCTTCCACCTGGACTTCCTCTGCTGCCAACTGCGGCCGACCAAGGACAGCGTGCTGCGCCTGGGGCCCCGCGGC
73% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000169433.3
CDS CCA 72 bp GCCCGGGTTGCGGTCCACCCTGCCCTCGGCGCCTCTTaGGTCCCGGAGCCGAGGCGGTATGAAGAACTGTGG +
Preference number: 6 (lower is better)
Translates to: ARVAVHPALGAS*VPEPRRYEELW
Trigger: CCACAGTTCTTCATACCGCCTCGGCTCCGGGACCCAAGAGGCGCCGAGGGCAGGGTGGACCGCAACCCGGGC
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000169433.3
CDS CCA 72 bp TTGGTCGGCCGCAGTTGGCAGCAGAGGAAGTCCAGGTaGAAGAGCGGTGGCGCACGGCGCGGCGCGTACGGA +
Preference number: 6 (lower is better)
Translates to: LVGRSWQQRKSR*KSGGARRGAYG
Trigger: TCCGTACGCGCCGCGCCGTGCGCCACCGCTCTTCCACCTGGACTTCCTCTGCTGCCAACTGCGGCCGACCAA
69% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000169433.3
CDS CAA 72 bp AACTGTGGGATGCGGTCGGGGGTGAGGACATTAGGGTaGCAGCGCGAGGGCGAGCCCCGGGCCTGGCGCTTG +
Preference number: 6 (lower is better)
Translates to: NCGMRSGVRTLG*QREGEPRAWRL
Trigger: CAAGCGCCAGGCCCGGGGCTCGCCCTCGCGCTGCAACCCTAATGTCCTCACCCCCGACCGCATCCCACAGTT
69% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000169433.3
CDS TCA 72 bp ATAGGGTTGCAGCTGCTCTGGACCACCCGGCTCCGCTaGGCTCCAGGCCTAACGCGCGGCTGCAGCCGCAGA +
Preference number: 6 (lower is better)
Translates to: IGLQLLWTTRLR*APGLTRGCSRR
Trigger: TCTGCGGCTGCAGCCGCGCGTTAGGCCTGGAGCTCAGCGGAGCCGGGTGGTCCAGAGCAGCTGCAACCCTAT
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000169433.3
CDS CCA 72 bp CCCAGGCGCAGCACGCTGTCCTTGGTCGGCCGCAGTTaGCAGCAGAGGAAGTCCAGGTGGAAGAGCGGTGGC +
Preference number: 6 (lower is better)
Translates to: PRRSTLSLVGRS*QQRKSRWKSGG
Trigger: GCCACCGCTCTTCCACCTGGACTTCCTCTGCTGCCAACTGCGGCCGACCAAGGACAGCGTGCTGCGCCTGGG
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000169433.3
CDS CAA 72 bp TCCGGCGGGCGCAGCCCCTCGAAGAAGAAGTCTTCGTaGAAGATAGGGTTGCAGCTGCTCTGGACCACCCGG +
Preference number: 6 (lower is better)
Translates to: SGGRSPSKKKSS*KIGLQLLWTTR
Trigger: CCGGGTGGTCCAGAGCAGCTGCAACCCTATCTTCAACGAAGACTTCTTCTTCGAGGGGCTGCGCCCGCCGGA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000169433.3
CDS CCA 72 bp TCTTGGGTCCCGGAGCCGAGGCGGTATGAAGAACTGTaGGATGCGGTCGGGGGTGAGGACATTAGGGTTGCA +
Preference number: 6 (lower is better)
Translates to: SWVPEPRRYEEL*DAVGGEDIRVA
Trigger: TGCAACCCTAATGTCCTCACCCCCGACCGCATCCCACAGTTCTTCATACCGCCTCGGCTCCGGGACCCAAGA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000169433.3