Pregenerated sensors for C2CD4B (Mus musculus)
Ensembl gene IDs: ENSMUSG00000091956Ensembl transcript IDs: ENSMUST00000171652.3
Found 17 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR GCA 90 bp | AAGGCTGTTGTGTGTGTCCCGGGGATAAGCCACTGTCAAGAGGCCTTGAGTATCGGCCAAGAGTCTCTGTaGATCTCAAGGCGACTCAAC | + |
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Preference number: 2 (lower is better) Translates to: KAVVCVPGISHCQEALSIGQESL*ISRRLN Trigger: GTTGAGTCGCCTTGAGATGCACAGAGACTCTTGGCC...GATACTCAAGGCCTCTTGACAGTGGCTTATCCCCGGGACACACACAACAGCCTT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000171652.3 |
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| 3UTR TCA 72 bp | CCGGGGATAAGCCACTGTCAAGAGGCCTTGAGTATCTaGGGGCCAAGAGTCTCTGTGCATCTCAAGGCGACT | + |
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Preference number: 3 (lower is better) Translates to: PGISHCQEALSI*GPRVSVHLKAT Trigger: AGTCGCCTTGAGATGCACAGAGACTCTTGGCCCTCAGATACTCAAGGCCTCTTGACAGTGGCTTATCCCCGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000171652.3 |
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| CDS-3UTR CCA 90 bp | TGTGTGTGTCCCGGGGATAAGCCACTGTCAAGAGGCCTTGAGTATCTGAGGGCCCTGGGGGTGCCGGGGTaGCCGAGGAAGAGCGACTCC | + |
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Preference number: 4 (lower is better) Translates to: CVCPGDKPLSRGLEYLRALGVPG*PRKSDS Trigger: GGAGTCGCTCTTCCTCGGCCACCCCGGCACCCCCAG...GGCCCTCAGATACTCAAGGCCTCTTGACAGTGGCTTATCCCCGGGACACACACA 63% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000171652.3 |
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| CDS-3UTR CCA 90 bp | TGTGTGTGTCCCGGGGATAAGCCACTGTCAAGAGGCCTTGAGTATCTGAGGGCCGGGGATGCAGAACTCTaGGATGCGGCCCGGGGTGAG | + |
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Preference number: 4 (lower is better) Translates to: CVCPGDKPLSRGLEYLRAGDAEL*DAARGE Trigger: CTCACCCCGGGCCGCATCCCAGAGTTCTGCATCCCC...GGCCCTCAGATACTCAAGGCCTCTTGACAGTGGCTTATCCCCGGGACACACACA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000171652.3 |
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| CDS-3UTR GCA 90 bp | AGAGGCCTTGAGTATCTGAGGGCCAAGAGTCTCTGTGCATCTCAAGGCGACTCAAGAAGCCGTAAACGGTaGGCGCGCGGGGCAGGTGCG | + |
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Preference number: 4 (lower is better) Translates to: RGLEYLRAKSLCASQGDSRSRKR*ARGAGA Trigger: CGCACCTGCCCCGCGCGCGCACCGTTTACGGCTTCT...TGAGTCGCCTTGAGATGCACAGAGACTCTTGGCCCTCAGATACTCAAGGCCTCT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000171652.3 |
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| CDS-3UTR CCA 90 bp | GGCTGTTGTGTGTGTCCCGGGGATAAGCCACTGTCAAGAGGCCTTGAGTATCTGGGGCACTGGAGCGGCTaGTGGGGTTTTGTCCAGGTC | + |
|
Preference number: 4 (lower is better) Translates to: GCCVCPGDKPLSRGLEYLGHWSG*WGFVQV Trigger: GACCTGGACAAAACCCCACCAGCCGCTCCAGTGCCC...CAGATACTCAAGGCCTCTTGACAGTGGCTTATCCCCGGGACACACACAACAGCC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000171652.3 |
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| CDS-3UTR GCA 90 bp | AGTCTCTGTGCATCTCAAGGCGACTCAACCTTAAATGTCCAGAGCACCAGGGAACGCGGTCGTCAGGGATaGGCGGCCACAGGTCCGGTT | + |
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Preference number: 4 (lower is better) Translates to: SLCASQGDSTLNVQSTRERGRQG*AATGPV Trigger: AACCGGACCTGTGGCCGCGCATCCCTGACGACCGCG...TTCCCTGGTGCTCTGGACATTTAAGGTTGAGTCGCCTTGAGATGCACAGAGACT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000171652.3 |
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| CDS-3UTR CCA 90 bp | GAGTCTCTGTGCATCTCAAGGCGACTCAACCTTAAATGTCCAGAGCACCAGGGAGCGCATACGGGGCACTaGAGCGGCTGGTGGGGTTTT | + |
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Preference number: 4 (lower is better) Translates to: ESLCISRRLNLKCPEHQGAHTGH*SGWWGF Trigger: AAAACCCCACCAGCCGCTCCAGTGCCCCGTATGCGC...TCCCTGGTGCTCTGGACATTTAAGGTTGAGTCGCCTTGAGATGCACAGAGACTC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000171652.3 |
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| CDS-3UTR CCA 90 bp | GATAAGCCACTGTCAAGAGGCCTTGAGTATCTGAGGGCCAAGAGTCTCTGTGCAAGGCAGGCTCAGGAGTaGAGGAGCGAAGTCGACCGA | + |
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Preference number: 4 (lower is better) Translates to: DKPLSRGLEYLRAKSLCARQAQE*RSEVDR Trigger: TCGGTCGACTTCGCTCCTCCACTCCTGAGCCTGCCT...TGCACAGAGACTCTTGGCCCTCAGATACTCAAGGCCTCTTGACAGTGGCTTATC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000171652.3 |
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| CDS-3UTR CAA 90 bp | TGTGTGTGTCCCGGGGATAAGCCACTGTCAAGAGGCCTTGAGTATCTGAGGGCCCCCGGGGTGAGCACGTaGGAGAAGGCAGGCTCAGGA | + |
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Preference number: 5 (lower is better) Translates to: CVCPGDKPLSRGLEYLRAPGVST*EKAGSG Trigger: TCCTGAGCCTGCCTTCTCCAACGTGCTCACCCCGGG...GGCCCTCAGATACTCAAGGCCTCTTGACAGTGGCTTATCCCCGGGACACACACA 61% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000171652.3 |
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| CDS-3UTR CAA 90 bp | GATAAGCCACTGTCAAGAGGCCTTGAGTATCTGAGGGCCAAGAGTCTCTGTGCAGCGGCTGGTGGGGTTTaGTCCAGGTCGCGCGGGGCG | + |
|
Preference number: 5 (lower is better) Translates to: DKPLSRGLEYLRAKSLCAAAGGV*SRSRGA Trigger: CGCCCCGCGCGACCTGGACAAAACCCCACCAGCCGC...TGCACAGAGACTCTTGGCCCTCAGATACTCAAGGCCTCTTGACAGTGGCTTATC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000171652.3 |
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| CDS-3UTR CAA 90 bp | AAGGCTGTTGTGTGTGTCCCGGGGATAAGCCACTGTCAAGAGGCCTTGAGTATCCCCTTGCTCTCCGCCTaGATGCGCACGGCCAGGCGG | + |
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Preference number: 5 (lower is better) Translates to: KAVVCVPGISHCQEALSIPLLSA*MRTARR Trigger: CCGCCTGGCCGTGCGCATCAAGGCGGAGAGCAAGGG...GATACTCAAGGCCTCTTGACAGTGGCTTATCCCCGGGACACACACAACAGCCTT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000171652.3 |
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| CDS-3UTR CAA 90 bp | CCACTGTCAAGAGGCCTTGAGTATCTGAGGGCCAAGAGTCTCTGTGCATCTCAACACGCTGGCTTCAGCTaGCAGGCGCTCGGGATCCGG | + |
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Preference number: 5 (lower is better) Translates to: PLSRGLEYLRAKSLCASQHAGFS*QALGIR Trigger: CCGGATCCCGAGCGCCTGCAAGCTGAAGCCAGCGTG...TTGAGATGCACAGAGACTCTTGGCCCTCAGATACTCAAGGCCTCTTGACAGTGG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000171652.3 |
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| CDS CCA 72 bp | CATAGCAGTAGCAGAGAGCCCAGCAGCAGCTCGCCCTaGCCCAGCGGTCGTCCGCGCTCCAGCCCGCGGCCC | + |
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Preference number: 6 (lower is better) Translates to: HSSSREPSSSSP*PSGRPRSSPRP Trigger: GGGCCGCGGGCTGGAGCGCGGACGACCGCTGGGCCAGGGCGAGCTGCTGCTGGGCTCTCTGCTACTGCTATG 74% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000171652.3 |
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| CDS GCA 72 bp | AGGTGTGCGCACGGTGGCAAAGTCCCAGCCTGGGGGTaGCGGGGTGGCCGAGGAAGAGCGACTCCTTCCGGC | + |
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Preference number: 6 (lower is better) Translates to: RCAHGGKVPAWG*RGGRGRATPSG Trigger: GCCGGAAGGAGTCGCTCTTCCTCGGCCACCCCGGCACCCCCAGGCTGGGACTTTGCCACCGTGCGCACACCT 71% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000171652.3 |
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| CDS CCA 72 bp | TCGCGTAGGTGTGCGCACGGTGGCAAAGTCCCAGCCTaGGGGTGCCGGGGTGGCCGAGGAAGAGCGACTCCT | + |
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Preference number: 6 (lower is better) Translates to: SRRCAHGGKVPA*GCRGGRGRATP Trigger: AGGAGTCGCTCTTCCTCGGCCACCCCGGCACCCCCAGGCTGGGACTTTGCCACCGTGCGCACACCTACGCGA 69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000171652.3 |
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| CDS CAA 72 bp | ATGCAGAACTCTGGGATGCGGCCCGGGGTGAGCACGTaGGAGAAGGCAGGCTCAGGAGTGGAGGAGCGAAGT | + |
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Preference number: 6 (lower is better) Translates to: MQNSGMRPGVST*EKAGSGVEERS Trigger: ACTTCGCTCCTCCACTCCTGAGCCTGCCTTCTCCAACGTGCTCACCCCGGGCCGCATCCCAGAGTTCTGCAT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000171652.3 |
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