RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for C2CD4A (Mus musculus)

Ensembl gene IDs: ENSMUSG00000047990

Ensembl transcript IDs: ENSMUST00000054500.7

Found 29 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 72 bp AGTGTTCCAGGACCAAGAGGAGGCTACAAGTGTCTCTaGGCCAAGAGTCTCTGTGCATCTCATGGCCAAGCG +
Preference number: 3 (lower is better)
Translates to: SVPGPRGGYKCL*AKSLCASHGQA
Trigger: CGCTTGGCCATGAGATGCACAGAGACTCTTGGCCCAGAGACACTTGTAGCCTCCTCTTGGTCCTGGAACACT
56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054500.7
CDS-3UTR TCA 90 bp AAGAGTGTCTCAGGGCCAAGAAGCTGCAAGTGTTCCAGGACCAAGAGGAGGCTAGCCTCAGCACCAGGCTaGGGCGGCAGCCCAGGGCGC +
Preference number: 4 (lower is better)
Translates to: KSVSGPRSCKCSRTKRRLASAPG*GGSPGR
Trigger: GCGCCCTGGGCTGCCGCCTCAGCCTGGTGCTGAGGC...TAGCCTCCTCTTGGTCCTGGAACACTTGCAGCTTCTTGGCCCTGAGACACTCTT
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054500.7
CDS-3UTR CCA 90 bp GAAGCTGCAAGTGTTCCAGGACCAAGAGGAGGCTACAAGTGTCTCTGGGCCAAGAGCAGCAGCTCGCCCTaGCCCAGCCGCCGTCCCTTG +
Preference number: 4 (lower is better)
Translates to: EAASVPGPRGGYKCLWAKSSSSP*PSRRPL
Trigger: CAAGGGACGGCGGCTGGGCCAGGGCGAGCTGCTGCT...CTTGGCCCAGAGACACTTGTAGCCTCCTCTTGGTCCTGGAACACTTGCAGCTTC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054500.7
CDS-3UTR GCA 90 bp GAAGCTGCAAGTGTTCCAGGACCAAGAGGAGGCTACAAGTGTCTCTGGGCCAAGGTCGGCCTCCGTGTCTaGAGCCCAGGCTTCGCGCAG +
Preference number: 4 (lower is better)
Translates to: EAASVPGPRGGYKCLWAKVGLRV*SPGFAQ
Trigger: CTGCGCGAAGCCTGGGCTGCAGACACGGAGGCCGAC...CTTGGCCCAGAGACACTTGTAGCCTCCTCTTGGTCCTGGAACACTTGCAGCTTC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054500.7
CDS-3UTR CCA 90 bp GGAGGCTACAAGTGTCTCTGGGCCAAGAGTCTCTGTGCATCTCATGGCCAAGCGCGAGCTTTGGAGCGGTaGACGCGCCCCGGGAGAAAC +
Preference number: 4 (lower is better)
Translates to: GGYKCLWAKSLCASHGQARALER*TRPGRN
Trigger: GTTTCTCCCGGGGCGCGTCCACCGCTCCAAAGCTCG...CGCTTGGCCATGAGATGCACAGAGACTCTTGGCCCAGAGACACTTGTAGCCTCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000054500.7
CDS-3UTR CCA 90 bp TCAGGGCCAAGAAGCTGCAAGTGTTCCAGGACCAAGAGGAGGCTACAAGTGTCTGGAGGCGGCGTCTGCTaGGAGCAGGAGTGGGCGTCG +
Preference number: 4 (lower is better)
Translates to: SGPRSCKCSRTKRRLQVSGGGVC*EQEWAS
Trigger: CGACGCCCACTCCTGCTCCCAGCAGACGCCGCCTCC...AGACACTTGTAGCCTCCTCTTGGTCCTGGAACACTTGCAGCTTCTTGGCCCTGA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054500.7
CDS-3UTR CCA 90 bp GTGTGCCAGGACCAAAACCTAAGAGTGTCTCAGGGCCAAGAAGCTGCAAGTGTTTGCTGGGAGCAGGAGTaGGCGTCGGGACCCGGGCAG +
Preference number: 4 (lower is better)
Translates to: VCQDQNLRVSQGQEAASVCWEQE*ASGPGQ
Trigger: CTGCCCGGGTCCCGACGCCCACTCCTGCTCCCAGCA...AACACTTGCAGCTTCTTGGCCCTGAGACACTCTTAGGTTTTGGTCCTGGCACAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000054500.7
CDS-3UTR TCA 90 bp GCTGCAAGTGTTCCAGGACCAAGAGGAGGCTACAAGTGTCTCTGGGCCAAGAGTGGATGCGGTCTGGAGTaGGCACGTTTGCGCACGCAG +
Preference number: 4 (lower is better)
Translates to: AASVPGPRGGYKCLWAKSGCGLE*ARLRTQ
Trigger: CTGCGTGCGCAAACGTGCTCACTCCAGACCGCATCC...ACTCTTGGCCCAGAGACACTTGTAGCCTCCTCTTGGTCCTGGAACACTTGCAGC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054500.7
CDS-3UTR TCA 90 bp AAGTGTTCCAGGACCAAGAGGAGGCTACAAGTGTCTCTGGGCCAAGAGTCTCTGCCAGCCTCGGCGGGATaGAGAACTCTGGGATGCGGT +
Preference number: 4 (lower is better)
Translates to: KCSRTKRRLQVSLGQESLPASAG*RTLGCG
Trigger: ACCGCATCCCAGAGTTCTTCATCCCGCCGAGGCTGG...CAGAGACTCTTGGCCCAGAGACACTTGTAGCCTCCTCTTGGTCCTGGAACACTT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054500.7
CDS-3UTR CCA 90 bp GGAGGCTACAAGTGTCTCTGGGCCAAGAGTCTCTGTGCATCTCATGGCCAAGCGCTCTGGGATGCGGTCTaGAGTGAGCACGTTTGCGCA +
Preference number: 4 (lower is better)
Translates to: GGYKCLWAKSLCASHGQALWDAV*SEHVCA
Trigger: TGCGCAAACGTGCTCACTCCAGACCGCATCCCAGAG...CGCTTGGCCATGAGATGCACAGAGACTCTTGGCCCAGAGACACTTGTAGCCTCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054500.7
CDS-3UTR CCA 90 bp TTCCAGGACCAAGAGGAGGCTACAAGTGTCTCTGGGCCAAGAGTCTCTGTGCATCGGGATGAAGAACTCTaGGATGCGGTCTGGAGTGAG +
Preference number: 4 (lower is better)
Translates to: FQDQEEATSVSGPRVSVHRDEEL*DAVWSE
Trigger: CTCACTCCAGACCGCATCCCAGAGTTCTTCATCCCG...ATGCACAGAGACTCTTGGCCCAGAGACACTTGTAGCCTCCTCTTGGTCCTGGAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054500.7
3UTR CAA 72 bp AACACATGTTTATTTTGTACAAATGGCTGTCAGTCATaGTCCAAGAGCCAAGAGGCTGAGAGTGTGCCAGGA +
Preference number: 4 (lower is better)
Translates to: NTCLFCTNGCQS*SKSQEAESVPG
Trigger: TCCTGGCACACTCTCAGCCTCTTGGCTCTTGGACAATGACTGACAGCCATTTGTACAAAATAAACATGTGTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000054500.7
CDS CCA 90 bp GCGTCTGCTGGGAGCAGGAGTGGGCGTCGGGACCCGGGCAGCGTCTaGGTCGCCCGGGGCAGGGCGCGGAGCGTCCGGGACTCGGCGGGG +
Preference number: 5 (lower is better)
Translates to: ASAGSRSGRRDPGSV*VARGRARSVRDSAG
Trigger: CCCCGCCGAGTCCCGGACGCTCCGCGCCCTGCCCCGGGCGACCCAGACGCTGCCCGGGTCCCGACGCCCACTCCTGCTCCCAGCAGACGC
80% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000054500.7
CDS GCA 90 bp GGCGCGGAGCGTCCGGGACTCGGCGGGGGCTCGCGTAGGTGTGCGTaGGGTGGCGAAGCCCAGGCCGGCGGACCGGGACACCTGGGTGGC +
Preference number: 5 (lower is better)
Translates to: GAERPGLGGGSRRCA*GGEAQAGGPGHLGG
Trigger: GCCACCCAGGTGTCCCGGTCCGCCGGCCTGGGCTTCGCCACCGCACGCACACCTACGCGAGCCCCCGCCGAGTCCCGGACGCTCCGCGCC
79% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000054500.7
CDS CCA 90 bp GCTTGCCCGGGGAGCGTAGGAGGCGGCGTCTGCTGGGAGCAGGAGTaGGCGTCGGGACCCGGGCAGCGTCTGGGTCGCCCGGGGCAGGGC +
Preference number: 5 (lower is better)
Translates to: ACPGSVGGGVCWEQE*ASGPGQRLGRPGQG
Trigger: GCCCTGCCCCGGGCGACCCAGACGCTGCCCGGGTCCCGACGCCCACTCCTGCTCCCAGCAGACGCCGCCTCCTACGCTCCCCGGGCAAGC
78% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000054500.7
CDS CCA 90 bp CGCGGCTCAGCAGCTTGCCCGGGGAGCGTAGGAGGCGGCGTCTGCTaGGAGCAGGAGTGGGCGTCGGGACCCGGGCAGCGTCTGGGTCGC +
Preference number: 5 (lower is better)
Translates to: RGSAACPGSVGGGVC*EQEWASGPGQRLGR
Trigger: GCGACCCAGACGCTGCCCGGGTCCCGACGCCCACTCCTGCTCCCAGCAGACGCCGCCTCCTACGCTCCCCGGGCAAGCTGCTGAGCCGCG
76% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000054500.7
CDS GCA 90 bp GTGCGCGGCTCAGCAGCTTGCCCGGGGAGCGTAGGAGGCGGCGTCTaGTGGGAGCAGGAGTGGGCGTCGGGACCCGGGCAGCGTCTGGGT +
Preference number: 5 (lower is better)
Translates to: VRGSAACPGSVGGGV*WEQEWASGPGQRLG
Trigger: ACCCAGACGCTGCCCGGGTCCCGACGCCCACTCCTGCTCCCAGCAGACGCCGCCTCCTACGCTCCCCGGGCAAGCTGCTGAGCCGCGCAC
74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000054500.7
CDS TCA 90 bp CTCTGGGATGCGGTCTGGAGTGAGCACGTTTGCGCACGCAGCGGATaGGCGAGCTTTGGAGCGGTGGACGCGCCCCGGGAGAAACCCATC +
Preference number: 5 (lower is better)
Translates to: LWDAVWSEHVCARSG*ASFGAVDAPREKPI
Trigger: GATGGGTTTCTCCCGGGGCGCGTCCACCGCTCCAAAGCTCGCTCATCCGCTGCGTGCGCAAACGTGCTCACTCCAGACCGCATCCCAGAG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000054500.7
CDS-3UTR CAA 90 bp GCTGCAAGTGTTCCAGGACCAAGAGGAGGCTACAAGTGTCTCTGGGCCAAGAGTGCGCGGCTCAGCAGCTaGCCCGGGGAGCGTAGGAGG +
Preference number: 5 (lower is better)
Translates to: AASVPGPRGGYKCLWAKSARLSS*PGERRR
Trigger: CCTCCTACGCTCCCCGGGCAAGCTGCTGAGCCGCGC...ACTCTTGGCCCAGAGACACTTGTAGCCTCCTCTTGGTCCTGGAACACTTGCAGC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000054500.7
CDS GCA 72 bp GTCTGTGCGGCCCGCGCCGTCGTCGGCCTCCGTGTCTaGAGCCCAGGCTTCGCGCAGCGCAGCCCAGGCCGT +
Preference number: 6 (lower is better)
Translates to: VCAARAVVGLRV*SPGFAQRSPGR
Trigger: ACGGCCTGGGCTGCGCTGCGCGAAGCCTGGGCTGCAGACACGGAGGCCGACGACGGCGCGGGCCGCACAGAC
76% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054500.7
CDS CCA 72 bp GGGAGCGTAGGAGGCGGCGTCTGCTGGGAGCAGGAGTaGGCGTCGGGACCCGGGCAGCGTCTGGGTCGCCCG +
Preference number: 6 (lower is better)
Translates to: GSVGGGVCWEQE*ASGPGQRLGRP
Trigger: CGGGCGACCCAGACGCTGCCCGGGTCCCGACGCCCACTCCTGCTCCCAGCAGACGCCGCCTCCTACGCTCCC
76% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054500.7
CDS CCA 72 bp GCAGCTTGCCCGGGGAGCGTAGGAGGCGGCGTCTGCTaGGAGCAGGAGTGGGCGTCGGGACCCGGGCAGCGT +
Preference number: 6 (lower is better)
Translates to: AACPGSVGGGVC*EQEWASGPGQR
Trigger: ACGCTGCCCGGGTCCCGACGCCCACTCCTGCTCCCAGCAGACGCCGCCTCCTACGCTCCCCGGGCAAGCTGC
75% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000054500.7
CDS GCA 72 bp TCAGCAGCTTGCCCGGGGAGCGTAGGAGGCGGCGTCTaGTGGGAGCAGGAGTGGGCGTCGGGACCCGGGCAG +
Preference number: 6 (lower is better)
Translates to: SAACPGSVGGGV*WEQEWASGPGQ
Trigger: CTGCCCGGGTCCCGACGCCCACTCCTGCTCCCAGCAGACGCCGCCTCCTACGCTCCCCGGGCAAGCTGCTGA
74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000054500.7
CDS CAA 72 bp AGACGTCGAGGGGCTCGAAGTGCGCGGCTCAGCAGCTaGCCCGGGGAGCGTAGGAGGCGGCGTCTGCTGGGA +
Preference number: 6 (lower is better)
Translates to: RRRGARSARLSS*PGERRRRRLLG
Trigger: TCCCAGCAGACGCCGCCTCCTACGCTCCCCGGGCAAGCTGCTGAGCCGCGCACTTCGAGCCCCTCGACGTCT
71% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000054500.7
CDS TCA 72 bp GCGGTCTGGAGTGAGCACGTTTGCGCACGCAGCGGATaGGCGAGCTTTGGAGCGGTGGACGCGCCCCGGGAG +
Preference number: 6 (lower is better)
Translates to: AVWSEHVCARSG*ASFGAVDAPRE
Trigger: CTCCCGGGGCGCGTCCACCGCTCCAAAGCTCGCTCATCCGCTGCGTGCGCAAACGTGCTCACTCCAGACCGC
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000054500.7
CDS CAA 90 bp CGGTCTGGAGTGAGCACGTTTGCGCACGCAGCGGATGAGCGAGCTTaGGAGCGGTGGACGCGCCCCGGGAGAAACCCATCTCGGTCCCGC +
Preference number: 6 (lower is better)
Translates to: RSGVSTFAHAADERA*ERWTRPGRNPSRSR
Trigger: GCGGGACCGAGATGGGTTTCTCCCGGGGCGCGTCCACCGCTCCAAAGCTCGCTCATCCGCTGCGTGCGCAAACGTGCTCACTCCAGACCG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000054500.7
CDS CCA 72 bp TTTGCGCACGCAGCGGATGAGCGAGCTTTGGAGCGGTaGACGCGCCCCGGGAGAAACCCATCTCGGTCCCGC +
Preference number: 6 (lower is better)
Translates to: FAHAADERALER*TRPGRNPSRSR
Trigger: GCGGGACCGAGATGGGTTTCTCCCGGGGCGCGTCCACCGCTCCAAAGCTCGCTCATCCGCTGCGTGCGCAAA
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000054500.7
CDS CCA 72 bp CATAGCAGTAGCAGAGAGCCCAGCAGCAGCTCGCCCTaGCCCAGCCGCCGTCCCTTGCTCTCCGCCTTGATG +
Preference number: 6 (lower is better)
Translates to: HSSSREPSSSSP*PSRRPLLSALM
Trigger: CATCAAGGCGGAGAGCAAGGGACGGCGGCTGGGCCAGGGCGAGCTGCTGCTGGGCTCTCTGCTACTGCTATG
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054500.7
CDS CAA 72 bp GTGAGCACGTTTGCGCACGCAGCGGATGAGCGAGCTTaGGAGCGGTGGACGCGCCCCGGGAGAAACCCATCT +
Preference number: 6 (lower is better)
Translates to: VSTFAHAADERA*ERWTRPGRNPS
Trigger: AGATGGGTTTCTCCCGGGGCGCGTCCACCGCTCCAAAGCTCGCTCATCCGCTGCGTGCGCAAACGTGCTCAC
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000054500.7