Pregenerated sensors for C1RB (Mus musculus)
Ensembl gene IDs: ENSMUSG00000098470Ensembl transcript IDs: ENSMUST00000184647.2
Found 58 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS-3UTR CCA 90 bp | ACGGTCTGCATCTGTGATTTTTATATGAGAATCATAGTGCTTATCAACAATTGGGTTGCCGGGCCTGGCTaGCTGCCCTCCAATGATGCG | + |
|
Preference number: 4 (lower is better) Translates to: TVCICDFYMRIIVLINNWVAGPG*LPSNDA Trigger: CGCATCATTGGAGGGCAGCCAGCCAGGCCCGGCAAC...CCAATTGTTGATAAGCACTATGATTCTCATATAAAAATCACAGATGCAGACCGT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000184647.2 |
||
| CDS-3UTR GCA 90 bp | ACGGTCTGCATCTGTGATTTTTATATGAGAATCATAGTGCTTATCAACAATTGGCTGGGCATGGCACGATaGCACGTGCCATCATGCTGG | + |
|
Preference number: 4 (lower is better) Translates to: TVCICDFYMRIIVLINNWLGMAR*HVPSCW Trigger: CCAGCATGATGGCACGTGGCATCGTGCCATGCCCAG...CCAATTGTTGATAAGCACTATGATTCTCATATAAAAATCACAGATGCAGACCGT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000184647.2 |
||
| CDS-3UTR GCA 90 bp | CTATACACGGTCTGCATCTGTGATTTTTATATGAGAATCATAGTGCTTATCAACATAGTGGTGAAGGCCTaGCAGGGGAAGTTGCCGGGC | + |
|
Preference number: 4 (lower is better) Translates to: LYTVCICDFYMRIIVLINIVVKA*QGKLPG Trigger: GCCCGGCAACTTCCCCTGGCAGGCCTTCACCACTAT...GTTGATAAGCACTATGATTCTCATATAAAAATCACAGATGCAGACCGTGTATAG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000184647.2 |
||
| CDS-3UTR CCA 90 bp | ACGGTCTGCATCTGTGATTTTTATATGAGAATCATAGTGCTTATCAACAATTGGCAGGGCCCCACCCCCTaGCCCATAGATAGTGGTGAA | + |
|
Preference number: 4 (lower is better) Translates to: TVCICDFYMRIIVLINNWQGPTP*PIDSGE Trigger: TTCACCACTATCTATGGGCCAGGGGGTGGGGCCCTG...CCAATTGTTGATAAGCACTATGATTCTCATATAAAAATCACAGATGCAGACCGT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000184647.2 |
||
| CDS-3UTR GCA 90 bp | TTGGGATTACAGAAAAGAGAGTTTATTCTATACACGGTCTGCATCTGTGATTTTAGGGGAGAATCCAGCTaGCCACAGAACCTCCCCAGT | + |
|
Preference number: 4 (lower is better) Translates to: LGLQKREFILYTVCICDFRGESS*PQNLPS Trigger: ACTGGGGAGGTTCTGTGGGCAGCTGGATTCTCCCCT...AAAATCACAGATGCAGACCGTGTATAGAATAAACTCTCTTTTCTGTAATCCCAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000184647.2 |
||
| CDS-3UTR GCA 90 bp | ACGGTCTGCATCTGTGATTTTTATATGAGAATCATAGTGCTTATCAACAATTGGTCCAGGAACTTGAGGTaGACAGTGAGGCCCCTCTCC | + |
|
Preference number: 4 (lower is better) Translates to: TVCICDFYMRIIVLINNWSRNLR*TVRPLS Trigger: GGAGAGGGGCCTCACTGTGCACCTCAAGTTCCTGGA...CCAATTGTTGATAAGCACTATGATTCTCATATAAAAATCACAGATGCAGACCGT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000184647.2 |
||
| CDS-3UTR GCA 90 bp | TTGGGATTACAGAAAAGAGAGTTTATTCTATACACGGTCTGCATCTGTGATTTTGCATGGACTCGCTGCTaGCAGCTCTGGTCAGCATCT | + |
|
Preference number: 4 (lower is better) Translates to: LGLQKREFILYTVCICDFAWTRC*QLWSAS Trigger: AGATGCTGACCAGAGCTGGCAGCAGCGAGTCCATGC...AAAATCACAGATGCAGACCGTGTATAGAATAAACTCTCTTTTCTGTAATCCCAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000184647.2 |
||
| CDS-3UTR TCA 90 bp | TTGGGATTACAGAAAAGAGAGTTTATTCTATACACGGTCTGCATCTGTGATTTTAAGGACAGTAGCGCCTaGTTTCCCTCCATGAGCTGG | + |
|
Preference number: 4 (lower is better) Translates to: LGLQKREFILYTVCICDFKDSSA*FPSMSW Trigger: CCAGCTCATGGAGGGAAATCAGGCGCTACTGTCCTT...AAAATCACAGATGCAGACCGTGTATAGAATAAACTCTCTTTTCTGTAATCCCAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000184647.2 |
||
| CDS-3UTR GCA 90 bp | ACGGTCTGCATCTGTGATTTTTATATGAGAATCATAGTGCTTATCAACAATTGGCCCGGATGCTGTAGTTaGAGCGTAGATCCGGTGGAT | + |
|
Preference number: 4 (lower is better) Translates to: TVCICDFYMRIIVLINNWPGCCS*SVDPVD Trigger: ATCCACCGGATCTACGCTGCAACTACAGCATCCGGG...CCAATTGTTGATAAGCACTATGATTCTCATATAAAAATCACAGATGCAGACCGT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000184647.2 |
||
| CDS-3UTR GCA 90 bp | ACGGTCTGCATCTGTGATTTTTATATGAGAATCATAGTGCTTATCAACAATTGGCCCTCTCCACCCGGATaGTGTAGTTGCAGCGTAGAT | + |
|
Preference number: 4 (lower is better) Translates to: TVCICDFYMRIIVLINNWPSPPG*CSCSVD Trigger: ATCTACGCTGCAACTACAGCATCCGGGTGGAGAGGG...CCAATTGTTGATAAGCACTATGATTCTCATATAAAAATCACAGATGCAGACCGT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000184647.2 |
||
| CDS-3UTR GCA 90 bp | CTATACACGGTCTGCATCTGTGATTTTTATATGAGAATCATAGTGCTTATCAACTGGCACGATGCCACGTaGCATCATGCTGGCAAACAG | + |
|
Preference number: 4 (lower is better) Translates to: LYTVCICDFYMRIIVLINWHDAT*HHAGKQ Trigger: CTGTTTGCCAGCATGATGGCACGTGGCATCGTGCCA...GTTGATAAGCACTATGATTCTCATATAAAAATCACAGATGCAGACCGTGTATAG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000184647.2 |
||
| CDS-3UTR TCA 90 bp | ACGGTCTGCATCTGTGATTTTTATATGAGAATCATAGTGCTTATCAACAATTGGACCCTACGGACTGGGTaGTGTCCCAGTTTTTGGATC | + |
|
Preference number: 4 (lower is better) Translates to: TVCICDFYMRIIVLINNWTLRTG*CPSFWI Trigger: GATCCAAAAACTGGGACATCACCCAGTCCGTAGGGT...CCAATTGTTGATAAGCACTATGATTCTCATATAAAAATCACAGATGCAGACCGT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000184647.2 |
||
| CDS-3UTR GCA 90 bp | TTGGGATTACAGAAAAGAGAGTTTATTCTATACACGGTCTGCATCTGTGATTTTTGTAGAGCTCACTGCTaGACTCAGCCTGGCAGGATT | + |
|
Preference number: 4 (lower is better) Translates to: LGLQKREFILYTVCICDFCRAHC*TQPGRI Trigger: AATCCTGCCAGGCTGAGTGCAGCAGTGAGCTCTACA...AAAATCACAGATGCAGACCGTGTATAGAATAAACTCTCTTTTCTGTAATCCCAA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000184647.2 |
||
| CDS-3UTR GCA 90 bp | CTATACACGGTCTGCATCTGTGATTTTTATATGAGAATCATAGTGCTTATCAACTGCCACGTGCCATCATaGTGGCAAACAGCTGTGAAG | + |
|
Preference number: 4 (lower is better) Translates to: LYTVCICDFYMRIIVLINCHVPS*WQTAVK Trigger: CTTCACAGCTGTTTGCCAGCATGATGGCACGTGGCA...GTTGATAAGCACTATGATTCTCATATAAAAATCACAGATGCAGACCGTGTATAG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000184647.2 |
||
| CDS-3UTR GCA 90 bp | CTATACACGGTCTGCATCTGTGATTTTTATATGAGAATCATAGTGCTTATCAACGACAGGCTTTGGGGCTaGCCACAGTTCTTGATCTTG | + |
|
Preference number: 4 (lower is better) Translates to: LYTVCICDFYMRIIVLINDRLWG*PQFLIL Trigger: CAAGATCAAGAACTGTGGGCAGCCCCAAAGCCTGTC...GTTGATAAGCACTATGATTCTCATATAAAAATCACAGATGCAGACCGTGTATAG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000184647.2 |
||
| CDS-3UTR CCA 90 bp | ACGGTCTGCATCTGTGATTTTTATATGAGAATCATAGTGCTTATCAACAATTGGCACGTGCCATCATGCTaGCAAACAGCTGTGAAGGAC | + |
|
Preference number: 4 (lower is better) Translates to: TVCICDFYMRIIVLINNWHVPSC*QTAVKD Trigger: GTCCTTCACAGCTGTTTGCCAGCATGATGGCACGTG...CCAATTGTTGATAAGCACTATGATTCTCATATAAAAATCACAGATGCAGACCGT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000184647.2 |
||
| CDS-3UTR GCA 90 bp | ACGGTCTGCATCTGTGATTTTTATATGAGAATCATAGTGCTTATCAACAATTGGAGGTCTGGAGGCCTTTaGTTTCCACAGAATTCACCC | + |
|
Preference number: 4 (lower is better) Translates to: TVCICDFYMRIIVLINNWRSGGL*FPQNSP Trigger: GGGTGAATTCTGTGGAAAGCAAAGGCCTCCAGACCT...CCAATTGTTGATAAGCACTATGATTCTCATATAAAAATCACAGATGCAGACCGT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000184647.2 |
||
| CDS-3UTR GCA 90 bp | TTGGGATTACAGAAAAGAGAGTTTATTCTATACACGGTCTGCATCTGTGATTTTGAACAGCAGATCCACTaGATTGCTGCTGGTGTCAAG | + |
|
Preference number: 4 (lower is better) Translates to: LGLQKREFILYTVCICDFEQQIH*IAAGVK Trigger: CTTGACACCAGCAGCAATGCAGTGGATCTGCTGTTC...AAAATCACAGATGCAGACCGTGTATAGAATAAACTCTCTTTTCTGTAATCCCAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000184647.2 |
||
| CDS-3UTR CCA 90 bp | TTGGGATTACAGAAAAGAGAGTTTATTCTATACACGGTCTGCATCTGTGATTTTCTTTGTTGGGATACTTaGGGTAGATGGTGTGGGCTG | + |
|
Preference number: 4 (lower is better) Translates to: LGLQKREFILYTVCICDFLCWDT*GRWCGL Trigger: CAGCCCACACCATCTACCCCAAGTATCCCAACAAAG...AAAATCACAGATGCAGACCGTGTATAGAATAAACTCTCTTTTCTGTAATCCCAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000184647.2 |
||
| CDS-3UTR GCA 90 bp | CTATACACGGTCTGCATCTGTGATTTTTATATGAGAATCATAGTGCTTATCAACCTTCATTCTTCCAAATaGCTTGGGCTGTGCAGGTAT | + |
|
Preference number: 4 (lower is better) Translates to: LYTVCICDFYMRIIVLINLHSSK*LGLCRY Trigger: ATACCTGCACAGCCCAAGGCATTTGGAAGAATGAAG...GTTGATAAGCACTATGATTCTCATATAAAAATCACAGATGCAGACCGTGTATAG 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000184647.2 |
||
| CDS-3UTR GCA 90 bp | TTGGGATTACAGAAAAGAGAGTTTATTCTATACACGGTCTGCATCTGTGATTTTAACCTCCCCAGTGTTTaGTTATCAGCAGAAATCTTA | + |
|
Preference number: 4 (lower is better) Translates to: LGLQKREFILYTVCICDFNLPSV*LSAEIL Trigger: TAAGATTTCTGCTGATAAGCAAACACTGGGGAGGTT...AAAATCACAGATGCAGACCGTGTATAGAATAAACTCTCTTTTCTGTAATCCCAA 37% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000184647.2 |
||
| CDS TCA 90 bp | ATCCGGTGGATAGGGCTGAGGGTATTCAAGGCTGGAGACATAGCCTaGGGGCTCTGTGTAGAGCTCACTGCTGCACTCAGCCTGGCAGGA | + |
|
Preference number: 5 (lower is better) Translates to: IRWIGLRVFKAGDIA*GLCVELTAALSLAG Trigger: TCCTGCCAGGCTGAGTGCAGCAGTGAGCTCTACACAGAGCCCTCAGGCTATGTCTCCAGCCTTGAATACCCTCAGCCCTATCCACCGGAT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000184647.2 |
||
| CDS GCA 90 bp | TGGGGCTGCCCACAGTTCTTGATCTTGCACCTGGGCATGGCACGATaGCACGTGCCATCATGCTGGCAAACAGCTGTGAAGGACAGTAGC | + |
|
Preference number: 5 (lower is better) Translates to: WGCPQFLILHLGMAR*HVPSCWQTAVKDSS Trigger: GCTACTGTCCTTCACAGCTGTTTGCCAGCATGATGGCACGTGGCATCGTGCCATGCCCAGGTGCAAGATCAAGAACTGTGGGCAGCCCCA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000184647.2 |
||
| CDS TCA 90 bp | TGGTGTAGTGCAGCTTCCAGCCTCGGCTGTCCCCTGACTCATCTGTaGAGAACAGCAGATCCACTGCATTGCTGCTGGTGTCAAGGTCTG | + |
|
Preference number: 5 (lower is better) Translates to: WCSAASSLGCPLTHL*RTADPLHCCWCQGL Trigger: CAGACCTTGACACCAGCAGCAATGCAGTGGATCTGCTGTTCTTCACAGATGAGTCAGGGGACAGCCGAGGCTGGAAGCTGCACTACACCA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000184647.2 |
||
| CDS TCA 90 bp | GATGGTTTCAGTGGTGTAGTGCAGCTTCCAGCCTCGGCTGTCCCCTaGCTCATCTGTGAAGAACAGCAGATCCACTGCATTGCTGCTGGT | + |
|
Preference number: 5 (lower is better) Translates to: DGFSGVVQLPASAVP*LICEEQQIHCIAAG Trigger: ACCAGCAGCAATGCAGTGGATCTGCTGTTCTTCACAGATGAGTCAGGGGACAGCCGAGGCTGGAAGCTGCACTACACCACTGAAACCATC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000184647.2 |
||
| CDS TCA 90 bp | GTTGTGACACAGATGTTGGCATCGGGGCTGCAAACCCTCTTCCACTaGGTTGGGCTGCGATGCACATTCATCAAGGTCTACAGCCTGGTA | + |
|
Preference number: 5 (lower is better) Translates to: VVTQMLASGLQTLFH*VGLRCTFIKVYSLV Trigger: TACCAGGCTGTAGACCTTGATGAATGTGCATCGCAGCCCAACTCAGTGGAAGAGGGTTTGCAGCCCCGATGCCAACATCTGTGTCACAAC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000184647.2 |
||
| CDS TCA 90 bp | CAAGGTCTACAGCCTGGTAGTAGGCCAGGAAGCCCTTGTAGAACATaGTGGTCCCATTCTCCTCATTGGAGAAGTCTGTGTGGAAGGTCA | + |
|
Preference number: 5 (lower is better) Translates to: QGLQPGSRPGSPCRT*WSHSPHWRSLCGRS Trigger: TGACCTTCCACACAGACTTCTCCAATGAGGAGAATGGGACCATCATGTTCTACAAGGGCTTCCTGGCCTACTACCAGGCTGTAGACCTTG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000184647.2 |
||
| CDS-3UTR CAA 90 bp | CTATACACGGTCTGCATCTGTGATTTTTATATGAGAATCATAGTGCTTATCAACCCCCTGGCAGGCGTCTaGCTGTACAGCTGGGTCCCC | + |
|
Preference number: 5 (lower is better) Translates to: LYTVCICDFYMRIIVLINPLAGV*LYSWVP Trigger: GGGGACCCAGCTGTACAGCAAGACGCCTGCCAGGGG...GTTGATAAGCACTATGATTCTCATATAAAAATCACAGATGCAGACCGTGTATAG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000184647.2 |
||
| CDS-3UTR CAA 90 bp | CTATACACGGTCTGCATCTGTGATTTTTATATGAGAATCATAGTGCTTATCAACAACTCATCCAGAGCCTaGGGCTGGGGGCACTTGATG | + |
|
Preference number: 5 (lower is better) Translates to: LYTVCICDFYMRIIVLINNSSRA*GWGHLM Trigger: CATCAAGTGCCCCCAGCCCAAGGCTCTGGATGAGTT...GTTGATAAGCACTATGATTCTCATATAAAAATCACAGATGCAGACCGTGTATAG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000184647.2 |
||
| CDS-3UTR CAA 90 bp | ACGGTCTGCATCTGTGATTTTTATATGAGAATCATAGTGCTTATCAACAATTGGGGCTGCCCACAGTTCTaGATCTTGCACCTGGGCATG | + |
|
Preference number: 5 (lower is better) Translates to: TVCICDFYMRIIVLINNWGCPQF*ILHLGM Trigger: CATGCCCAGGTGCAAGATCAAGAACTGTGGGCAGCC...CCAATTGTTGATAAGCACTATGATTCTCATATAAAAATCACAGATGCAGACCGT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000184647.2 |
||
| CDS-3UTR CAA 90 bp | TTGGGATTACAGAAAAGAGAGTTTATTCTATACACGGTCTGCATCTGTGATTTTCCCATTAGACAGGCTTaGGGGCTGCCCACAGTTCTT | + |
|
Preference number: 5 (lower is better) Translates to: LGLQKREFILYTVCICDFPIRQA*GLPTVL Trigger: AAGAACTGTGGGCAGCCCCAAAGCCTGTCTAATGGG...AAAATCACAGATGCAGACCGTGTATAGAATAAACTCTCTTTTCTGTAATCCCAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000184647.2 |
||
| CDS-3UTR CAA 90 bp | CTATACACGGTCTGCATCTGTGATTTTTATATGAGAATCATAGTGCTTATCAACAGCAGATCCACTGCATaGCTGCTGGTGTCAAGGTCT | + |
|
Preference number: 5 (lower is better) Translates to: LYTVCICDFYMRIIVLINSRSTA*LLVSRS Trigger: AGACCTTGACACCAGCAGCAATGCAGTGGATCTGCT...GTTGATAAGCACTATGATTCTCATATAAAAATCACAGATGCAGACCGTGTATAG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000184647.2 |
||
| CDS-3UTR CAA 90 bp | ACGGTCTGCATCTGTGATTTTTATATGAGAATCATAGTGCTTATCAACAATTGGCATGAGCTGGTAGCCTaGCTTGCAGGTGACAGTGAA | + |
|
Preference number: 5 (lower is better) Translates to: TVCICDFYMRIIVLINNWHELVA*LAGDSE Trigger: TTCACTGTCACCTGCAAGCAAGGCTACCAGCTCATG...CCAATTGTTGATAAGCACTATGATTCTCATATAAAAATCACAGATGCAGACCGT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000184647.2 |
||
| CDS-3UTR CAA 90 bp | ACGGTCTGCATCTGTGATTTTTATATGAGAATCATAGTGCTTATCAACAATTGGGTCCCATTCTCCTCATaGGAGAAGTCTGTGTGGAAG | + |
|
Preference number: 5 (lower is better) Translates to: TVCICDFYMRIIVLINNWVPFSS*EKSVWK Trigger: CTTCCACACAGACTTCTCCAATGAGGAGAATGGGAC...CCAATTGTTGATAAGCACTATGATTCTCATATAAAAATCACAGATGCAGACCGT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000184647.2 |
||
| CDS-3UTR CAA 90 bp | TTGGGATTACAGAAAAGAGAGTTTATTCTATACACGGTCTGCATCTGTGATTTTATAGGGGCAGTGCACTaGCTGGTGGTCATCAATTTC | + |
|
Preference number: 5 (lower is better) Translates to: LGLQKREFILYTVCICDFIGAVH*LVVINF Trigger: GAAATTGATGACCACCAGCAAGTGCACTGCCCCTAT...AAAATCACAGATGCAGACCGTGTATAGAATAAACTCTCTTTTCTGTAATCCCAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000184647.2 |
||
| CDS-3UTR CAA 90 bp | ACGGTCTGCATCTGTGATTTTTATATGAGAATCATAGTGCTTATCAACAATTGGAAGGTCTGGAGGCCTTaGCTTTCCACAGAATTCACC | + |
|
Preference number: 5 (lower is better) Translates to: TVCICDFYMRIIVLINNWKVWRP*LSTEFT Trigger: GGTGAATTCTGTGGAAAGCAAAGGCCTCCAGACCTT...CCAATTGTTGATAAGCACTATGATTCTCATATAAAAATCACAGATGCAGACCGT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000184647.2 |
||
| CDS-3UTR CAA 90 bp | ACGGTCTGCATCTGTGATTTTTATATGAGAATCATAGTGCTTATCAACAATTGGGGATCTGTTCCATGTTaGTGTGGCCCAGGAAAACAA | + |
|
Preference number: 5 (lower is better) Translates to: TVCICDFYMRIIVLINNWGSVPC*CGPGKQ Trigger: TTGTTTTCCTGGGCCACACAAACATGGAACAGATCC...CCAATTGTTGATAAGCACTATGATTCTCATATAAAAATCACAGATGCAGACCGT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000184647.2 |
||
| CDS-3UTR CAA 90 bp | TTGGGATTACAGAAAAGAGAGTTTATTCTATACACGGTCTGCATCTGTGATTTTGAGAAGTATCCTTTTTaGTCCAGAGCCATCTCTGGC | + |
|
Preference number: 5 (lower is better) Translates to: LGLQKREFILYTVCICDFEKYPF*SRAISG Trigger: GCCAGAGATGGCTCTGGACAAAAAAGGATACTTCTC...AAAATCACAGATGCAGACCGTGTATAGAATAAACTCTCTTTTCTGTAATCCCAA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000184647.2 |
||
| CDS-3UTR CAA 90 bp | TTGGGATTACAGAAAAGAGAGTTTATTCTATACACGGTCTGCATCTGTGATTTTGAACCTCCCCAGTGTTaGCTTATCAGCAGAAATCTT | + |
|
Preference number: 5 (lower is better) Translates to: LGLQKREFILYTVCICDFEPPQC*LISRNL Trigger: AAGATTTCTGCTGATAAGCAAACACTGGGGAGGTTC...AAAATCACAGATGCAGACCGTGTATAGAATAAACTCTCTTTTCTGTAATCCCAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000184647.2 |
||
| CDS-3UTR CAA 90 bp | ACGGTCTGCATCTGTGATTTTTATATGAGAATCATAGTGCTTATCAACAATTGGCAGCATCTTGTTTCCTaGGGACATGAATTCCTTGCT | + |
|
Preference number: 5 (lower is better) Translates to: TVCICDFYMRIIVLINNWQHLVS*GHEFLA Trigger: AGCAAGGAATTCATGTCCCAAGGAAACAAGATGCTG...CCAATTGTTGATAAGCACTATGATTCTCATATAAAAATCACAGATGCAGACCGT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000184647.2 |
||
| CDS-3UTR CAA 90 bp | TTGGGATTACAGAAAAGAGAGTTTATTCTATACACGGTCTGCATCTGTGATTTTGTGATGTCCCAGTTTTaGGATCTGTTCCATGTTTGT | + |
|
Preference number: 5 (lower is better) Translates to: LGLQKREFILYTVCICDFVMSQF*DLFHVC Trigger: ACAAACATGGAACAGATCCAAAAACTGGGACATCAC...AAAATCACAGATGCAGACCGTGTATAGAATAAACTCTCTTTTCTGTAATCCCAA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000184647.2 |
||
| CDS CAA 90 bp | CTGGCTGGCTGCCCTCCAATGATGCGCTCCTTCTGTGTCACAGGGTaGACAGGTTTCCCACACACTGGCAGACACCGGGGCATTTTCTCT | + |
|
Preference number: 6 (lower is better) Translates to: LAGCPPMMRSFCVTG*TGFPHTGRHRGIFS Trigger: AGAGAAAATGCCCCGGTGTCTGCCAGTGTGTGGGAAACCTGTCAACCCTGTGACACAGAAGGAGCGCATCATTGGAGGGCAGCCAGCCAG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000184647.2 |
||
| CDS CCA 72 bp | ACCCATGAGGCCTTGGCCATAGAAGGTCTCATTGTCTaGGAGACAGATGGGGAGGAGTTCGGGGCCCAGTGT | + |
|
Preference number: 6 (lower is better) Translates to: THEALAIEGLIV*ETDGEEFGAQC Trigger: ACACTGGGCCCCGAACTCCTCCCCATCTGTCTCCCAGACAATGAGACCTTCTATGGCCAAGGCCTCATGGGT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000184647.2 |
||
| CDS TCA 72 bp | GCAGCTTCCAGCCTCGGCTGTCCCCTGACTCATCTGTaGAGAACAGCAGATCCACTGCATTGCTGCTGGTGT | + |
|
Preference number: 6 (lower is better) Translates to: AASSLGCPLTHL*RTADPLHCCWC Trigger: ACACCAGCAGCAATGCAGTGGATCTGCTGTTCTTCACAGATGAGTCAGGGGACAGCCGAGGCTGGAAGCTGC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000184647.2 |
||
| CDS GCA 72 bp | CCACAGTTCTTGATCTTGCACCTGGGCATGGCACGATaGCACGTGCCATCATGCTGGCAAACAGCTGTGAAG | + |
|
Preference number: 6 (lower is better) Translates to: PQFLILHLGMAR*HVPSCWQTAVK Trigger: CTTCACAGCTGTTTGCCAGCATGATGGCACGTGGCATCGTGCCATGCCCAGGTGCAAGATCAAGAACTGTGG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000184647.2 |
||
| CDS CCA 72 bp | AGGTCACCTCTCCATAGAGCTTCTGAGGGAGGTAGATaGAGCCTTCCACCCCATAGAACAGGGTCACCAGGA | + |
|
Preference number: 6 (lower is better) Translates to: RSPLHRASEGGR*SLPPHRTGSPG Trigger: TCCTGGTGACCCTGTTCTATGGGGTGGAAGGCTCCATCTACCTCCCTCAGAAGCTCTATGGAGAGGTGACCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000184647.2 |
||
| CDS CCA 72 bp | GTTGGCATCGGGGCTGCAAACCCTCTTCCACTGAGTTaGGCTGCGATGCACATTCATCAAGGTCTACAGCCT | + |
|
Preference number: 6 (lower is better) Translates to: VGIGAANPLPLS*AAMHIHQGLQP Trigger: AGGCTGTAGACCTTGATGAATGTGCATCGCAGCCCAACTCAGTGGAAGAGGGTTTGCAGCCCCGATGCCAAC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000184647.2 |
||
| CDS CAA 72 bp | TGTTGGCATCGGGGCTGCAAACCCTCTTCCACTGAGTaGGGCTGCGATGCACATTCATCAAGGTCTACAGCC | + |
|
Preference number: 6 (lower is better) Translates to: CWHRGCKPSSTE*GCDAHSSRSTA Trigger: GGCTGTAGACCTTGATGAATGTGCATCGCAGCCCAACTCAGTGGAAGAGGGTTTGCAGCCCCGATGCCAACA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000184647.2 |
||
| CDS TCA 72 bp | CAGATGTTGGCATCGGGGCTGCAAACCCTCTTCCACTaGGTTGGGCTGCGATGCACATTCATCAAGGTCTAC | + |
|
Preference number: 6 (lower is better) Translates to: QMLASGLQTLFH*VGLRCTFIKVY Trigger: GTAGACCTTGATGAATGTGCATCGCAGCCCAACTCAGTGGAAGAGGGTTTGCAGCCCCGATGCCAACATCTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000184647.2 |
||
| CDS CCA 72 bp | CTTCTGTGTCACAGGGTTGACAGGTTTCCCACACACTaGCAGACACCGGGGCATTTTCTCTCCTTCCTCTTC | + |
|
Preference number: 6 (lower is better) Translates to: LLCHRVDRFPTH*QTPGHFLSFLF Trigger: GAAGAGGAAGGAGAGAAAATGCCCCGGTGTCTGCCAGTGTGTGGGAAACCTGTCAACCCTGTGACACAGAAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000184647.2 |
||
| CDS CAA 90 bp | CGGCTGTCCCCTGACTCATCTGTGAAGAACAGCAGATCCACTGCATaGCTGCTGGTGTCAAGGTCTGGAGGCCTTTGCTTTCCACAGAAT | + |
|
Preference number: 6 (lower is better) Translates to: RLSPDSSVKNSRSTA*LLVSRSGGLCFPQN Trigger: ATTCTGTGGAAAGCAAAGGCCTCCAGACCTTGACACCAGCAGCAATGCAGTGGATCTGCTGTTCTTCACAGATGAGTCAGGGGACAGCCG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000184647.2 |
||
| CDS CAA 90 bp | CCTATTTCCTGTTGTCCCGAATCCGCTGACATAACCCATGAGGCCTaGGCCATAGAAGGTCTCATTGTCTGGGAGACAGATGGGGAGGAG | + |
|
Preference number: 6 (lower is better) Translates to: PISCCPESADITHEA*AIEGLIVWETDGEE Trigger: CTCCTCCCCATCTGTCTCCCAGACAATGAGACCTTCTATGGCCAAGGCCTCATGGGTTATGTCAGCGGATTCGGGACAACAGGAAATAGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000184647.2 |
||
| CDS CAA 90 bp | GTTGCCCAGGGGAGAATCCAGCTGCCCACAGAACCTCCCCAGTGTTaGCTTATCAGCAGAAATCTTAACATAGTCATAGAGGCAGCCTTC | + |
|
Preference number: 6 (lower is better) Translates to: VAQGRIQLPTEPPQC*LISRNLNIVIEAAF Trigger: GAAGGCTGCCTCTATGACTATGTTAAGATTTCTGCTGATAAGCAAACACTGGGGAGGTTCTGTGGGCAGCTGGATTCTCCCCTGGGCAAC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000184647.2 |
||
| CDS CAA 72 bp | CCTGACTCATCTGTGAAGAACAGCAGATCCACTGCATaGCTGCTGGTGTCAAGGTCTGGAGGCCTTTGCTTT | + |
|
Preference number: 6 (lower is better) Translates to: PDSSVKNSRSTA*LLVSRSGGLCF Trigger: AAAGCAAAGGCCTCCAGACCTTGACACCAGCAGCAATGCAGTGGATCTGCTGTTCTTCACAGATGAGTCAGG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000184647.2 |
||
| CDS CAA 90 bp | CTTCCCATTAGCGTAGATCTGGAGCTGGTCATAGGGGCAGTGCACTaGCTGGTGGTCATCAATTTCAAAAGGATCCAGGAACTTGAGGTG | + |
|
Preference number: 6 (lower is better) Translates to: LPISVDLELVIGAVH*LVVINFKRIQELEV Trigger: CACCTCAAGTTCCTGGATCCTTTTGAAATTGATGACCACCAGCAAGTGCACTGCCCCTATGACCAGCTCCAGATCTACGCTAATGGGAAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000184647.2 |
||
| CDS CAA 90 bp | CAGCAGATCCACTGCATTGCTGCTGGTGTCAAGGTCTGGAGGCCTTaGCTTTCCACAGAATTCACCCAAGTTCTTCCCATTAGCGTAGAT | + |
|
Preference number: 6 (lower is better) Translates to: QQIHCIAAGVKVWRP*LSTEFTQVLPISVD Trigger: ATCTACGCTAATGGGAAGAACTTGGGTGAATTCTGTGGAAAGCAAAGGCCTCCAGACCTTGACACCAGCAGCAATGCAGTGGATCTGCTG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000184647.2 |
||
| CDS CAA 72 bp | AGCGTAGATCTGGAGCTGGTCATAGGGGCAGTGCACTaGCTGGTGGTCATCAATTTCAAAAGGATCCAGGAA | + |
|
Preference number: 6 (lower is better) Translates to: SVDLELVIGAVH*LVVINFKRIQE Trigger: TTCCTGGATCCTTTTGAAATTGATGACCACCAGCAAGTGCACTGCCCCTATGACCAGCTCCAGATCTACGCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000184647.2 |
||
| CDS CCA 72 bp | TCTCGATCAGCTACAGGCAGTCTGACAAACCTGAGATaGAAAGGTATCCTATTTCCTGTTGTCCCGAATCCG | + |
|
Preference number: 6 (lower is better) Translates to: SRSATGSLTNLR*KGILFPVVPNP Trigger: CGGATTCGGGACAACAGGAAATAGGATACCTTTCCATCTCAGGTTTGTCAGACTGCCTGTAGCTGATCGAGA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000184647.2 |
||