Pregenerated sensors for C1QL4 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000001076Ensembl transcript IDs: ENSMUST00000064462.5
Found 24 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR CCA 90 bp | GGAGGGGAAGGGAAAGAGTGGCTGCTGAGGTCTGTATCTAACCTGTGCCAGAGTTCGCCCCCGCCTAGGTaGCCTGGGGAGCGGGAGAGA | + |
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Preference number: 2 (lower is better) Translates to: GGEGKEWLLRSVSNLCQSSPPPR*PGERER Trigger: TCTCTCCCGCTCCCCAGGCCACCTAGGCGGGGGCGA...ACTCTGGCACAGGTTAGATACAGACCTCAGCAGCCACTCTTTCCCTTCCCCTCC 62% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000064462.5 |
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| 3UTR TCA 72 bp | CTAGGTGGCCTGGGGAGCGGGAGAGACTGCGGGCTCTaGAGGATGGGGCCTTGGGCAGGGCTAGCAGGAGGT | + |
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Preference number: 3 (lower is better) Translates to: LGGLGSGRDCGL*RMGPWAGLAGG Trigger: ACCTCCTGCTAGCCCTGCCCAAGGCCCCATCCTTCAGAGCCCGCAGTCTCTCCCGCTCCCCAGGCCACCTAG 68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000064462.5 |
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| 3UTR-3UTR CAA 90 bp | GTTCTTAATGCTAGGAAGGAAGTCCTTGGCTCCTCCAGTTCACAGGAAGGCCGCCTGAAGGATGGGGCCTaGGGCAGGGCTAGCAGGAGG | + |
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Preference number: 3 (lower is better) Translates to: VLNARKEVLGSSSSQEGRLKDGA*GRASRR Trigger: CCTCCTGCTAGCCCTGCCCAAGGCCCCATCCTTCAG...GCGGCCTTCCTGTGAACTGGAGGAGCCAAGGACTTCCTTCCTAGCATTAAGAAC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000064462.5 |
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| CDS-3UTR GCA 90 bp | AGGTGGCCTGGGGAGCGGGAGAGACTGCGGGCTCTGAAGGATGGGGCCTTGGGCCTGGGGGTCCTGGCCTaGCTGGCTCTCCAGGGGGCC | + |
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Preference number: 4 (lower is better) Translates to: RWPGERERLRALKDGALGLGVLA*LALQGA Trigger: GGCCCCCTGGAGAGCCAGGCAGGCCAGGACCCCCAG...GCCCAAGGCCCCATCCTTCAGAGCCCGCAGTCTCTCCCGCTCCCCAGGCCACCT 72% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt. Matches the following 1 transcripts: ENSMUST00000064462.5 |
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| CDS-3UTR CCA 90 bp | CCTTGGGCAGGGCTAGCAGGAGGTGGGTGCGGATTAGAGCGAGGGGTCGAGGGGAGGACCTGGGGGTCCTaGCCTGCCTGGCTCTCCAGG | + |
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Preference number: 4 (lower is better) Translates to: PWAGLAGGGCGLERGVEGRTWGS*PAWLSR Trigger: CCTGGAGAGCCAGGCAGGCCAGGACCCCCAGGTCCT...CCCCTCGACCCCTCGCTCTAATCCGCACCCACCTCCTGCTAGCCCTGCCCAAGG 69% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000064462.5 |
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| CDS-3UTR TCA 90 bp | CCTTGGGCAGGGCTAGCAGGAGGTGGGTGCGGATTAGAGCGAGGGGTCGAGGGGCTGGCATGGGGCAGGTaGACTTGCCGCTGGCTGCCT | + |
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Preference number: 4 (lower is better) Translates to: PWAGLAGGGCGLERGVEGLAWGR*TCRWLP Trigger: AGGCAGCCAGCGGCAAGTTCACCTGCCCCATGCCAG...CCCCTCGACCCCTCGCTCTAATCCGCACCCACCTCCTGCTAGCCCTGCCCAAGG 68% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000064462.5 |
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| CDS-3UTR CCA 90 bp | AGGTGGCCTGGGGAGCGGGAGAGACTGCGGGCTCTGAAGGATGGGGCCTTGGGCTGGCCTCGGGATGCGTaGGGGTCACACACCATGCGA | + |
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Preference number: 4 (lower is better) Translates to: RWPGERERLRALKDGALGWPRDA*GSHTMR Trigger: TCGCATGGTGTGTGACCCCCACGCATCCCGAGGCCA...GCCCAAGGCCCCATCCTTCAGAGCCCGCAGTCTCTCCCGCTCCCCAGGCCACCT 68% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000064462.5 |
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| CDS-3UTR GCA 90 bp | CCTTGGGCAGGGCTAGCAGGAGGTGGGTGCGGATTAGAGCGAGGGGTCGAGGGGTTGGTGTTCCCGCCGTaGACCTTCCCACCGTCCAGC | + |
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Preference number: 4 (lower is better) Translates to: PWAGLAGGGCGLERGVEGLVFPP*TFPPSS Trigger: GCTGGACGGTGGGAAGGTGCACGGCGGGAACACCAA...CCCCTCGACCCCTCGCTCTAATCCGCACCCACCTCCTGCTAGCCCTGCCCAAGG 67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000064462.5 |
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| CDS-3UTR GCA 90 bp | GGGGAGCGGGAGAGACTGCGGGCTCTGAAGGATGGGGCCTTGGGCAGGGCTAGCCTGCCTCGTAAGCGTTaGCCACGTTGGTCACCACGT | + |
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Preference number: 4 (lower is better) Translates to: GERERLRALKDGALGRASLPRKR*PRWSPR Trigger: ACGTGGTGACCAACGTGGGCAACGCTTACGAGGCAG...GCTAGCCCTGCCCAAGGCCCCATCCTTCAGAGCCCGCAGTCTCTCCCGCTCCCC 66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000064462.5 |
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| CDS-3UTR CCA 90 bp | CCTTGGGCAGGGCTAGCAGGAGGTGGGTGCGGATTAGAGCGAGGGGTCGAGGGGGCACCAGTAGCGGGATaGCTACCAGCAGCAGCAGCA | + |
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Preference number: 4 (lower is better) Translates to: PWAGLAGGGCGLERGVEGAPVAG*LPAAAA Trigger: TGCTGCTGCTGCTGGTAGCCATCCCGCTACTGGTGC...CCCCTCGACCCCTCGCTCTAATCCGCACCCACCTCCTGCTAGCCCTGCCCAAGG 66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000064462.5 |
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| CDS-3UTR CCA 90 bp | CCTTGGGCAGGGCTAGCAGGAGGTGGGTGCGGATTAGAGCGAGGGGTCGAGGGGGCCCCACCTCTCCCTTaGCACCTGGAGGTAAGGAAG | + |
|
Preference number: 4 (lower is better) Translates to: PWAGLAGGGCGLERGVEGAPPLP*HLEVRK Trigger: CTTCCTTACCTCCAGGTGCCAAGGGAGAGGTGGGGC...CCCCTCGACCCCTCGCTCTAATCCGCACCCACCTCCTGCTAGCCCTGCCCAAGG 66% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000064462.5 |
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| CDS-3UTR CCA 90 bp | TTCCCCCAGTTCCAGGCAGAAGGGAGGGCCACGCTCGAATTTCCTCTCTCTCTCTGGGCCAGGAGGACCTaGGGGTCCTGGCCTGCCTGG | + |
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Preference number: 4 (lower is better) Translates to: FPQFQAEGRATLEFPLSLWARRT*GSWPAW Trigger: CCAGGCAGGCCAGGACCCCCAGGTCCTCCTGGCCCA...GAGAGAGAGAGGAAATTCGAGCGTGGCCCTCCCTTCTGCCTGGAACTGGGGGAA 64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000064462.5 |
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| CDS-3UTR GCA 90 bp | GCCAGAGTCCCCCTCTCACCTAGACAGGTTCCTTCTCTTCTGCCCTTTCCCTCCGAACTTGCCGCTGGCTaGCTCGTAAGCGTTGCCCAC | + |
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Preference number: 4 (lower is better) Translates to: ARVPLSPRQVPSLLPFPSELAAG*LVSVAH Trigger: GTGGGCAACGCTTACGAGGCAGCCAGCGGCAAGTTC...GGAGGGAAAGGGCAGAAGAGAAGGAACCTGTCTAGGTGAGAGGGGGACTCTGGC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000064462.5 |
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| CDS-3UTR GCA 90 bp | GTGCCAGAGTCCCCCTCTCACCTAGACAGGTTCCTTCTCTTCTGCCCTTTCCCTTCAGATCGGCCCACATaGTGGTACCGTCACCGCCTC | + |
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Preference number: 4 (lower is better) Translates to: VPESPSHLDRFLLFCPFPSDRPT*WYRHRL Trigger: GAGGCGGTGACGGTACCAGCATGTGGGCCGATCTGA...AGGGAAAGGGCAGAAGAGAAGGAACCTGTCTAGGTGAGAGGGGGACTCTGGCAC 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000064462.5 |
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| CDS-3UTR GCA 90 bp | GTGAAGCTTCCCCCAGTTCCAGGCAGAAGGGAGGGCCACGCTCGAATTTCCTCTTCACCCACGTCTAGGTaGAGAATGACGCTGTTGCTG | + |
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Preference number: 4 (lower is better) Translates to: VKLPPVPGRREGHARISSSPTSR*RMTLLL Trigger: CAGCAACAGCGTCATTCTGCACCTAGACGTGGGTGA...AGAGGAAATTCGAGCGTGGCCCTCCCTTCTGCCTGGAACTGGGGGAAGCTTCAC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000064462.5 |
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| CDS-3UTR TCA 90 bp | GTTCTTAATGCTAGGAAGGAAGTCCTTGGCTCCTCCAGTTCACAGGAAGGCCGCCGTCACCGCCTCGCATaGGCACATGGTAAGCGAAGA | + |
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Preference number: 4 (lower is better) Translates to: VLNARKEVLGSSSSQEGRRHRLA*AHGKRR Trigger: TCTTCGCTTACCATGTGCTCATGCGAGGCGGTGACG...GCGGCCTTCCTGTGAACTGGAGGAGCCAAGGACTTCCTTCCTAGCATTAAGAAC 56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000064462.5 |
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| CDS-3UTR CCA 90 bp | GAGTCCCCCTCTCACCTAGACAGGTTCCTTCTCTTCTGCCCTTTCCCTCCCAAGAGGTGCTGTACTTATTaGTGTTCCCGCCGTGCACCT | + |
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Preference number: 4 (lower is better) Translates to: ESPSHLDRFLLFCPFPPKRCCTY*CSRRAP Trigger: AGGTGCACGGCGGGAACACCAATAAGTACAGCACCT...CTTGGGAGGGAAAGGGCAGAAGAGAAGGAACCTGTCTAGGTGAGAGGGGGACTC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000064462.5 |
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| 3UTR CAA 72 bp | GTACAAAATGGGTTCTTAATGCTAGGAAGGAAGTCCTaGGCTCCTCCAGTTCACAGGAAGGCCGCTGGTGGT | + |
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Preference number: 4 (lower is better) Translates to: VQNGFLMLGRKS*APPVHRKAAGG Trigger: ACCACCAGCGGCCTTCCTGTGAACTGGAGGAGCCAAGGACTTCCTTCCTAGCATTAAGAACCCATTTTGTAC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000064462.5 |
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| CDS-3UTR TCA 90 bp | TTTACCCCGGTGAGAGGTGAGACTTTGATCTCCGTTAGTGAAGCTTCCCCCAGTGTAGATGATGAATCCTaGGAAGGTGCTGTACTTATT | + |
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Preference number: 4 (lower is better) Translates to: FTPVRGETLISVSEASPSVDDES*EGAVLI Trigger: AATAAGTACAGCACCTTCTCAGGATTCATCATCTAC...ACTGGGGGAAGCTTCACTAACGGAGATCAAAGTCTCACCTCTCACCGGGGTAAA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000064462.5 |
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| CDS CCA 90 bp | CCTGGAGGTAAGGAAGGCACCGAGGCGGGCGCGCCGTCGGGGCCTTaGCCTCGGGATGCGTGGGGGTCACACACCATGCGACAGCGACCT | + |
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Preference number: 5 (lower is better) Translates to: PGGKEGTEAGAPSGP*PRDAWGSHTMRQRP Trigger: AGGTCGCTGTCGCATGGTGTGTGACCCCCACGCATCCCGAGGCCAAGGCCCCGACGGCGCGCCCGCCTCGGTGCCTTCCTTACCTCCAGG 71% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000064462.5 |
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| CDS GCA 90 bp | CGCCGTCGGGGCCTTGGCCTCGGGATGCGTGGGGGTCACACACCATaGGACAGCGACCTAGCATCTCATAGTGTGTTGGTCCGCGAGAGC | + |
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Preference number: 5 (lower is better) Translates to: RRRGLGLGMRGGHTP*DSDLASHSVLVRES Trigger: GCTCTCGCGGACCAACACACTATGAGATGCTAGGTCGCTGTCGCATGGTGTGTGACCCCCACGCATCCCGAGGCCAAGGCCCCGACGGCG 66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000064462.5 |
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| CDS-3UTR CAA 90 bp | AGCAGGAGGTGGGTGCGGATTAGAGCGAGGGGTCGAGGGGGCGGGCGAACGAACAAGGTGCTGTACTTATaGGTGTTCCCGCCGTGCACC | + |
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Preference number: 5 (lower is better) Translates to: SRRWVRIRARGRGGGRTNKVLYL*VFPPCT Trigger: GGTGCACGGCGGGAACACCAATAAGTACAGCACCTT...GTTCGTTCGCCCGCCCCCTCGACCCCTCGCTCTAATCCGCACCCACCTCCTGCT 63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000064462.5 |
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| CDS-3UTR CAA 90 bp | GTGAAGCTTCCCCCAGTTCCAGGCAGAAGGGAGGGCCACGCTCGAATTTCCTCTCGCCCCACCTCTCCCTaGGCACCTGGAGGTAAGGAA | + |
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Preference number: 5 (lower is better) Translates to: VKLPPVPGRREGHARISSRPTSP*APGGKE Trigger: TTCCTTACCTCCAGGTGCCAAGGGAGAGGTGGGGCG...AGAGGAAATTCGAGCGTGGCCCTCCCTTCTGCCTGGAACTGGGGGAAGCTTCAC 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000064462.5 |
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| CDS CAA 72 bp | ACACCATGCGACAGCGACCTAGCATCTCATAGTGTGTaGGTCCGCGAGAGCTGTGCACCAGTAGCGGGATGG | + |
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Preference number: 6 (lower is better) Translates to: TPCDSDLASHSV*VRESCAPVAGW Trigger: CCATCCCGCTACTGGTGCACAGCTCTCGCGGACCAACACACTATGAGATGCTAGGTCGCTGTCGCATGGTGT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000064462.5 |
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