Pregenerated sensors for C1QL3 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000049630Ensembl transcript IDs: ENSMUST00000061545.7
Found 43 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | TTTACACAACTGAGATGCCCAGCAATGGGCATCCCCTGGGATCCTTaGTTCACTGACGTTAGCCATACGAATCCAGCGTTCAAACTCAGA | + |
|
Preference number: 1 (lower is better) Translates to: FTQLRCPAMGIPWDP*FTDVSHTNPAFKLR Trigger: TCTGAGTTTGAACGCTGGATTCGTATGGCTAACGTCAGTGAATCAAGGATCCCAGGGGATGCCCATTGCTGGGCATCTCAGTTGTGTAAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061545.7 |
||
| 3UTR TCA 90 bp | TGGGAATTCCACAAATCCAGAAAATTCCAGGTTAAGGCTTCAAGTTaGATCATTCCCAGGTCTAGCTCTAAAGATAACCAGAGTACAAGG | + |
|
Preference number: 1 (lower is better) Translates to: WEFHKSRKFQVKASS*IIPRSSSKDNQSTR Trigger: CCTTGTACTCTGGTTATCTTTAGAGCTAGACCTGGGAATGATTCAACTTGAAGCCTTAACCTGGAATTTTCTGGATTTGTGGAATTCCCA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061545.7 |
||
| 3UTR GCA 90 bp | CTATATAGGACTTCATTCACATGGACACTAACAATAAGGAGTATTTaGTTTGGCGGTAGTGGATCACACATCTGCTTATCTTGCGTTAAA | + |
|
Preference number: 1 (lower is better) Translates to: LYRTSFTWTLTIRSI*FGGSGSHICLSCVK Trigger: TTTAACGCAAGATAAGCAGATGTGTGATCCACTACCGCCAAAGCAAATACTCCTTATTGTTAGTGTCCATGTGAATGAAGTCCTATATAG 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061545.7 |
||
| 3UTR-3UTR TCA 90 bp | AGTACAAGGCAAACAGTATCTTTGGGGACAAGCAGCATTACTTCAATTAGACCTATCCCCTGGGATCCTTaGTTCACTGACGTTAGCCAT | + |
|
Preference number: 2 (lower is better) Translates to: STRQTVSLGTSSITSIRPIPWDP*FTDVSH Trigger: ATGGCTAACGTCAGTGAATCAAGGATCCCAGGGGAT...AGGTCTAATTGAAGTAATGCTGCTTGTCCCCAAAGATACTGTTTGCCTTGTACT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000061545.7 |
||
| 3UTR-3UTR TCA 90 bp | AGGCAAACAGTATCTTTGGGGACAAGCAGCATTACTTCAATTAGACCTTCTCCTGAGTCAGGTAGCATTTaGTCTCCCCACATTTACACA | + |
|
Preference number: 2 (lower is better) Translates to: RQTVSLGTSSITSIRPSPESGSI*SPHIYT Trigger: TGTGTAAATGTGGGGAGATCAAATGCTACCTGACTC...AGGAGAAGGTCTAATTGAAGTAATGCTGCTTGTCCCCAAAGATACTGTTTGCCT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000061545.7 |
||
| 3UTR-3UTR TCA 90 bp | GCATTACTTCAATTAGACCTTCTCCTGCAGGGAAAAATGACTCCTCCCTATACTCACAAGAACCAAAGCTaGCACGTGAATAAAGCAGCA | + |
|
Preference number: 2 (lower is better) Translates to: ALLQLDLLLQGKMTPPYTHKNQS*HVNKAA Trigger: TGCTGCTTTATTCACGTGTCAGCTTTGGTTCTTGTG...AGTATAGGGAGGAGTCATTTTTCCCTGCAGGAGAAGGTCTAATTGAAGTAATGC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000061545.7 |
||
| 3UTR-3UTR TCA 90 bp | ACCAGAGTACAAGGCAAACAGTATCTTTGGGGACAAGCAGCATTACTTCAATTAACCAAAGCTGACACGTaGATAAAGCAGCAAGATCAC | + |
|
Preference number: 2 (lower is better) Translates to: TRVQGKQYLWGQAALLQLTKADT*IKQQDH Trigger: GTGATCTTGCTGCTTTATTCACGTGTCAGCTTTGGT...TAATTGAAGTAATGCTGCTTGTCCCCAAAGATACTGTTTGCCTTGTACTCTGGT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061545.7 |
||
| 3UTR-3UTR TCA 90 bp | AAATGTGAAAATGATCACAGGCTTGGGAATTCCACAAATCCAGAAAATTCCAGGTCCTGCAGGGAAAAATaGCTCCTCCCTATACTACAA | + |
|
Preference number: 2 (lower is better) Translates to: KCENDHRLGNSTNPENSRSCREK*LLPILQ Trigger: TTGTAGTATAGGGAGGAGTCATTTTTCCCTGCAGGA...CCTGGAATTTTCTGGATTTGTGGAATTCCCAAGCCTGTGATCATTTTCACATTT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000061545.7 |
||
| 3UTR-3UTR GCA 90 bp | AGTACAAGGCAAACAGTATCTTTGGGGACAAGCAGCATTACTTCAATTAGACCTACAATAAGGAGTATTTaGTTTGGCGGTAGTGGATCA | + |
|
Preference number: 2 (lower is better) Translates to: STRQTVSLGTSSITSIRPTIRSI*FGGSGS Trigger: TGATCCACTACCGCCAAAGCAAATACTCCTTATTGT...AGGTCTAATTGAAGTAATGCTGCTTGTCCCCAAAGATACTGTTTGCCTTGTACT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061545.7 |
||
| 3UTR TCA 72 bp | CTGAGATGCCCAGCAATGGGCATCCCCTGGGATCCTTaGTTCACTGACGTTAGCCATACGAATCCAGCGTTC | + |
|
Preference number: 3 (lower is better) Translates to: LRCPAMGIPWDP*FTDVSHTNPAF Trigger: GAACGCTGGATTCGTATGGCTAACGTCAGTGAATCAAGGATCCCAGGGGATGCCCATTGCTGGGCATCTCAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061545.7 |
||
| 3UTR GCA 72 bp | ACTTCATTCACATGGACACTAACAATAAGGAGTATTTaGTTTGGCGGTAGTGGATCACACATCTGCTTATCT | + |
|
Preference number: 3 (lower is better) Translates to: TSFTWTLTIRSI*FGGSGSHICLS Trigger: AGATAAGCAGATGTGTGATCCACTACCGCCAAAGCAAATACTCCTTATTGTTAGTGTCCATGTGAATGAAGT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061545.7 |
||
| 3UTR CCA 72 bp | ATAAAAATTTGTGGTCTATATAGGACTTCATTCACATaGACACTAACAATAAGGAGTATTTGCTTTGGCGGT | + |
|
Preference number: 3 (lower is better) Translates to: IKICGLYRTSFT*TLTIRSICFGG Trigger: ACCGCCAAAGCAAATACTCCTTATTGTTAGTGTCCATGTGAATGAAGTCCTATATAGACCACAAATTTTTAT 35% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000061545.7 |
||
| CDS-3UTR GCA 90 bp | ATCCTTGATTCACTGACGTTAGCCATACGAATCCAGCGTTCAAACTCAGAACAGCCGGAGTGGCGGCGGTaGTGGGAGCCTTGGTGCCCC | + |
|
Preference number: 4 (lower is better) Translates to: ILDSLTLAIRIQRSNSEQPEWRR*WEPWCP Trigger: GGGGCACCAAGGCTCCCAGCACCGCCGCCACTCCGG...CTGTTCTGAGTTTGAACGCTGGATTCGTATGGCTAACGTCAGTGAATCAAGGAT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061545.7 |
||
| CDS-3UTR CCA 90 bp | AGTCAGGTAGCATTTGATCTCCCCACATTTACACAACTGAGATGCCCAGCAATGCGGTGCTGGGAGCCTTaGTGCCCCCATAGGGGTCGC | + |
|
Preference number: 4 (lower is better) Translates to: SQVAFDLPTFTQLRCPAMRCWEP*CPHRGR Trigger: GCGACCCCTATGGGGGCACCAAGGCTCCCAGCACCG...CATTGCTGGGCATCTCAGTTGTGTAAATGTGGGGAGATCAAATGCTACCTGACT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000061545.7 |
||
| CDS-3UTR TCA 90 bp | AGTCAGGTAGCATTTGATCTCCCCACATTTACACAACTGAGATGCCCAGCAATGCCGGTATGGAGCAGGTaGACTTGCCCGTGGTGGGAT | + |
|
Preference number: 4 (lower is better) Translates to: SQVAFDLPTFTQLRCPAMPVWSR*TCPWWD Trigger: ATCCCACCACGGGCAAGTTCACCTGCTCCATACCGG...CATTGCTGGGCATCTCAGTTGTGTAAATGTGGGGAGATCAAATGCTACCTGACT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061545.7 |
||
| CDS-3UTR GCA 90 bp | CTAACAATAAGGAGTATTTGCTTTGGCGGTAGTGGATCACACATCTGCTTATCTCGTAGTGAGCCGACGTaGCGGCCGAGCTCACCAGCA | + |
|
Preference number: 4 (lower is better) Translates to: LTIRSICFGGSGSHICLSRSEPT*RPSSPA Trigger: TGCTGGTGAGCTCGGCCGGCACGTCGGCTCACTACG...AGATAAGCAGATGTGTGATCCACTACCGCCAAAGCAAATACTCCTTATTGTTAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061545.7 |
||
| CDS-3UTR CCA 90 bp | TGTGAAAATGATCACAGGCTTGGGAATTCCACAAATCCAGAAAATTCCAGGTTAGAGTGGCGGCGGTGCTaGGAGCCTTGGTGCCCCCAT | + |
|
Preference number: 4 (lower is better) Translates to: CENDHRLGNSTNPENSRLEWRRC*EPWCPH Trigger: ATGGGGGCACCAAGGCTCCCAGCACCGCCGCCACTC...TAACCTGGAATTTTCTGGATTTGTGGAATTCCCAAGCCTGTGATCATTTTCACA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000061545.7 |
||
| CDS-3UTR GCA 90 bp | AGGCAAACAGTATCTTTGGGGACAAGCAGCATTACTTCAATTAGACCTTCTCCTAAAGTGGGCAGGGACTaGATAAGGCCCCGGTCCGGA | + |
|
Preference number: 4 (lower is better) Translates to: RQTVSLGTSSITSIRPSPKVGRD*IRPRSG Trigger: TCCGGACCGGGGCCTTATGCAGTCCCTGCCCACTTT...AGGAGAAGGTCTAATTGAAGTAATGCTGCTTGTCCCCAAAGATACTGTTTGCCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000061545.7 |
||
| CDS-3UTR GCA 90 bp | ACCAGAGTACAAGGCAAACAGTATCTTTGGGGACAAGCAGCATTACTTCAATTACGTGCTATAGGTGGCTaGACTGATAGCCCCGGCCGC | + |
|
Preference number: 4 (lower is better) Translates to: TRVQGKQYLWGQAALLQLRAIGG*TDSPGR Trigger: GCGGCCGGGGCTATCAGTGCAGCCACCTATAGCACG...TAATTGAAGTAATGCTGCTTGTCCCCAAAGATACTGTTTGCCTTGTACTCTGGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000061545.7 |
||
| CDS-3UTR GCA 90 bp | AATGTGAAAATGATCACAGGCTTGGGAATTCCACAAATCCAGAAAATTCCAGGTTGCTGGGAGCCTTGGTaGCCCCATAGGGGTCGCAGA | + |
|
Preference number: 4 (lower is better) Translates to: NVKMITGLGIPQIQKIPGCWEPW*PHRGRR Trigger: TCTGCGACCCCTATGGGGGCACCAAGGCTCCCAGCA...ACCTGGAATTTTCTGGATTTGTGGAATTCCCAAGCCTGTGATCATTTTCACATT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000061545.7 |
||
| CDS-3UTR GCA 90 bp | AATGTGAAAATGATCACAGGCTTGGGAATTCCACAAATCCAGAAAATTCCAGGTAGAGATCAGCCCACATaGTGGTGCCGTCCCCTCCGC | + |
|
Preference number: 4 (lower is better) Translates to: NVKMITGLGIPQIQKIPGRDQPT*WCRPLR Trigger: GCGGAGGGGACGGCACCAGCATGTGGGCTGATCTCT...ACCTGGAATTTTCTGGATTTGTGGAATTCCCAAGCCTGTGATCATTTTCACATT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000061545.7 |
||
| CDS-3UTR CCA 90 bp | AGTCAGGTAGCATTTGATCTCCCCACATTTACACAACTGAGATGCCCAGCAATGCGTAAAAGGCGATCTTaGGCACCGTGCTATAGGTGG | + |
|
Preference number: 4 (lower is better) Translates to: SQVAFDLPTFTQLRCPAMRKRRS*APCYRW Trigger: CCACCTATAGCACGGTGCCCAAGATCGCCTTTTACG...CATTGCTGGGCATCTCAGTTGTGTAAATGTGGGGAGATCAAATGCTACCTGACT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000061545.7 |
||
| CDS-3UTR CCA 90 bp | AGTACAAGGCAAACAGTATCTTTGGGGACAAGCAGCATTACTTCAATTAGACCTTCGCCTTTGGGACCCTaGATGAAAGTGGGCAGGGAC | + |
|
Preference number: 4 (lower is better) Translates to: STRQTVSLGTSSITSIRPSPLGP*MKVGRD Trigger: GTCCCTGCCCACTTTCATCCAGGGTCCCAAAGGCGA...AGGTCTAATTGAAGTAATGCTGCTTGTCCCCAAAGATACTGTTTGCCTTGTACT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061545.7 |
||
| CDS-3UTR CCA 90 bp | AGTCAGGTAGCATTTGATCTCCCCACATTTACACAACTGAGATGCCCAGCAATGAGTGGTTTCCGAGATTaGTTACCACGTCGTCGAACT | + |
|
Preference number: 4 (lower is better) Translates to: SQVAFDLPTFTQLRCPAMSGFRD*LPRRRT Trigger: AGTTCGACGACGTGGTAACCAATCTCGGAAACCACT...CATTGCTGGGCATCTCAGTTGTGTAAATGTGGGGAGATCAAATGCTACCTGACT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061545.7 |
||
| CDS-3UTR TCA 90 bp | GATACAGATGTGAGTCAGGTAGCATTTGATCTCCCCACATTTACACAACTGAGATCAGGACGTGGTAGGTaGAGAAGTAGATACCCGGTA | + |
|
Preference number: 4 (lower is better) Translates to: DTDVSQVAFDLPTFTQLRSGRGR*RSRYPV Trigger: TACCGGGTATCTACTTCTTCACCTACCACGTCCTGA...TCTCAGTTGTGTAAATGTGGGGAGATCAAATGCTACCTGACTCACATCTGTATC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061545.7 |
||
| CDS-3UTR TCA 90 bp | ACCAGAGTACAAGGCAAACAGTATCTTTGGGGACAAGCAGCATTACTTCAATTATCTCCTGGTTCCAGGTaGAGGACCACACTGTTACTG | + |
|
Preference number: 4 (lower is better) Translates to: TRVQGKQYLWGQAALLQLSPGSR*RTTLLL Trigger: CAGTAACAGTGTGGTCCTTCACCTGGAACCAGGAGA...TAATTGAAGTAATGCTGCTTGTCCCCAAAGATACTGTTTGCCTTGTACTCTGGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061545.7 |
||
| CDS-3UTR GCA 90 bp | GATACAGATGTGAGTCAGGTAGCATTTGATCTCCCCACATTTACACAACTGAGAGCACCTGGTTGTTTTTaGAGAGATCAGCCCACATGC | + |
|
Preference number: 4 (lower is better) Translates to: DTDVSQVAFDLPTFTQLRAPGCF*RDQPTC Trigger: GCATGTGGGCTGATCTCTGCAAAAACAACCAGGTGC...TCTCAGTTGTGTAAATGTGGGGAGATCAAATGCTACCTGACTCACATCTGTATC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000061545.7 |
||
| CDS-3UTR GCA 90 bp | CTGAGTGATACAGATGTGAGTCAGGTAGCATTTGATCTCCCCACATTTACACAAAGCATCTTGAGCAATTaGACTAGCACGCACCTGGTT | + |
|
Preference number: 4 (lower is better) Translates to: LSDTDVSQVAFDLPTFTQSILSN*TSTHLV Trigger: AACCAGGTGCGTGCTAGTGCAATTGCTCAAGATGCT...TTGTGTAAATGTGGGGAGATCAAATGCTACCTGACTCACATCTGTATCACTCAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061545.7 |
||
| CDS-3UTR CCA 90 bp | AAATGTGAAAATGATCACAGGCTTGGGAATTCCACAAATCCAGAAAATTCCAGGGCACTAGCACGCACCTaGTTGTTTTTGCAGAGATCA | + |
|
Preference number: 4 (lower is better) Translates to: KCENDHRLGNSTNPENSRALART*LFLQRS Trigger: TGATCTCTGCAAAAACAACCAGGTGCGTGCTAGTGC...CCTGGAATTTTCTGGATTTGTGGAATTCCCAAGCCTGTGATCATTTTCACATTT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000061545.7 |
||
| CDS-3UTR TCA 90 bp | GCATTACTTCAATTAGACCTTCTCCTGCAGGGAAAAATGACTCCTCCCTATACTTCCCACCATCTAATTTaGTATAGACTTCATCTCCTG | + |
|
Preference number: 4 (lower is better) Translates to: ALLQLDLLLQGKMTPPYTSHHLI*YRLHLL Trigger: CAGGAGATGAAGTCTATATCAAATTAGATGGTGGGA...AGTATAGGGAGGAGTCATTTTTCCCTGCAGGAGAAGGTCTAATTGAAGTAATGC 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000061545.7 |
||
| CDS-3UTR CCA 90 bp | TGTGAAAATGATCACAGGCTTGGGAATTCCACAAATCCAGAAAATTCCAGGTTATTGTTGTTTCCTCCGTaGGCTTTCCCACCATCTAAT | + |
|
Preference number: 4 (lower is better) Translates to: CENDHRLGNSTNPENSRLLLFPP*AFPPSN Trigger: ATTAGATGGTGGGAAAGCCCACGGAGGAAACAACAA...TAACCTGGAATTTTCTGGATTTGTGGAATTCCCAAGCCTGTGATCATTTTCACA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000061545.7 |
||
| CDS-3UTR CCA 90 bp | TGTGAAAATGATCACAGGCTTGGGAATTCCACAAATCCAGAAAATTCCAGGTTAGGACCACACTGTTACTaGCATAGTCGTAATTCTGAT | + |
|
Preference number: 4 (lower is better) Translates to: CENDHRLGNSTNPENSRLGPHCY*HSRNSD Trigger: ATCAGAATTACGACTATGCCAGTAACAGTGTGGTCC...TAACCTGGAATTTTCTGGATTTGTGGAATTCCCAAGCCTGTGATCATTTTCACA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000061545.7 |
||
| CDS CCA 90 bp | CGCGGGCCTGCCTTCCCCGGCCTACCGGCCTCGCCTTTGGGACCCTaGATGAAAGTGGGCAGGGACTGCATAAGGCCCCGGTCCGGAGTG | + |
|
Preference number: 5 (lower is better) Translates to: RGPAFPGLPASPLGP*MKVGRDCIRPRSGV Trigger: CACTCCGGACCGGGGCCTTATGCAGTCCCTGCCCACTTTCATCCAGGGTCCCAAAGGCGAGGCCGGTAGGCCGGGGAAGGCAGGCCCGCG 70% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000061545.7 |
||
| CDS GCA 90 bp | CTACCGGCCTCGCCTTTGGGACCCTGGATGAAAGTGGGCAGGGACTaGATAAGGCCCCGGTCCGGAGTGGCGGCGGTGCTGGGAGCCTTG | + |
|
Preference number: 5 (lower is better) Translates to: LPASPLGPWMKVGRD*IRPRSGVAAVLGAL Trigger: CAAGGCTCCCAGCACCGCCGCCACTCCGGACCGGGGCCTTATGCAGTCCCTGCCCACTTTCATCCAGGGTCCCAAAGGCGAGGCCGGTAG 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061545.7 |
||
| CDS-3UTR CAA 90 bp | AATGTGAAAATGATCACAGGCTTGGGAATTCCACAAATCCAGAAAATTCCAGGTCGGGCCGGGCAAGCCTaGGCGACCCGGCTCTCCCTT | + |
|
Preference number: 5 (lower is better) Translates to: NVKMITGLGIPQIQKIPGRAGQA*ATRLSL Trigger: AAGGGAGAGCCGGGTCGCCAAGGCTTGCCCGGCCCG...ACCTGGAATTTTCTGGATTTGTGGAATTCCCAAGCCTGTGATCATTTTCACATT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000061545.7 |
||
| CDS-3UTR CAA 90 bp | AGTCAGGTAGCATTTGATCTCCCCACATTTACACAACTGAGATGCCCAGCAATGCTAGCACGCACCTGGTaGTTTTTGCAGAGATCAGCC | + |
|
Preference number: 5 (lower is better) Translates to: SQVAFDLPTFTQLRCPAMLARTW*FLQRSA Trigger: GGCTGATCTCTGCAAAAACAACCAGGTGCGTGCTAG...CATTGCTGGGCATCTCAGTTGTGTAAATGTGGGGAGATCAAATGCTACCTGACT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000061545.7 |
||
| CDS-3UTR CAA 90 bp | ACAAGGCAAACAGTATCTTTGGGGACAAGCAGCATTACTTCAATTAGACCTTCTCGCACCTGGTTGTTTTaGCAGAGATCAGCCCACATG | + |
|
Preference number: 5 (lower is better) Translates to: TRQTVSLGTSSITSIRPSRTWLF*QRSAHM Trigger: CATGTGGGCTGATCTCTGCAAAAACAACCAGGTGCG...AGAAGGTCTAATTGAAGTAATGCTGCTTGTCCCCAAAGATACTGTTTGCCTTGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000061545.7 |
||
| CDS-3UTR CAA 90 bp | ATCCTTGATTCACTGACGTTAGCCATACGAATCCAGCGTTCAAACTCAGAACAGATTCTGATCAGCATCTaGAGCAATTGCACTAGCACG | + |
|
Preference number: 5 (lower is better) Translates to: ILDSLTLAIRIQRSNSEQILISI*SNCTST Trigger: CGTGCTAGTGCAATTGCTCAAGATGCTGATCAGAAT...CTGTTCTGAGTTTGAACGCTGGATTCGTATGGCTAACGTCAGTGAATCAAGGAT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061545.7 |
||
| CDS-3UTR CAA 90 bp | AGGCTTCAAGTTGAATCATTCCCAGGTCTAGCTCTAAAGATAACCAGAGTACAAGAGAATGTGCTGTATTaGTTGTTGTTTCCTCCGTGG | + |
|
Preference number: 5 (lower is better) Translates to: RLQVESFPGLALKITRVQENVLY*LLFPPW Trigger: CCACGGAGGAAACAACAACAAATACAGCACATTCTC...TTGTACTCTGGTTATCTTTAGAGCTAGACCTGGGAATGATTCAACTTGAAGCCT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061545.7 |
||
| CDS CCA 72 bp | GCCTTCCCCGGCCTACCGGCCTCGCCTTTGGGACCCTaGATGAAAGTGGGCAGGGACTGCATAAGGCCCCGG | + |
|
Preference number: 6 (lower is better) Translates to: AFPGLPASPLGP*MKVGRDCIRPR Trigger: CCGGGGCCTTATGCAGTCCCTGCCCACTTTCATCCAGGGTCCCAAAGGCGAGGCCGGTAGGCCGGGGAAGGC 68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000061545.7 |
||
| CDS GCA 72 bp | GTAAAAGGCGATCTTGGGCACCGTGCTATAGGTGGCTaGACTGATAGCCCCGGCCGCGTTCAGGCCGGGCGC | + |
|
Preference number: 6 (lower is better) Translates to: VKGDLGHRAIGG*TDSPGRVQAGR Trigger: GCGCCCGGCCTGAACGCGGCCGGGGCTATCAGTGCAGCCACCTATAGCACGGTGCCCAAGATCGCCTTTTAC 65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000061545.7 |
||
| CDS GCA 72 bp | CACGCACCTGGTTGTTTTTGCAGAGATCAGCCCACATaGTGGTGCCGTCCCCTCCGCGCATCAGGACGTGGT | + |
|
Preference number: 6 (lower is better) Translates to: HAPGCFCRDQPT*WCRPLRASGRG Trigger: ACCACGTCCTGATGCGCGGAGGGGACGGCACCAGCATGTGGGCTGATCTCTGCAAAAACAACCAGGTGCGTG 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000061545.7 |
||
| CDS GCA 72 bp | GGCATAGTCGTAATTCTGATCAGCATCTTGAGCAATTaGACTAGCACGCACCTGGTTGTTTTTGCAGAGATC | + |
|
Preference number: 6 (lower is better) Translates to: GIVVILISILSN*TSTHLVVFAEI Trigger: GATCTCTGCAAAAACAACCAGGTGCGTGCTAGTGCAATTGCTCAAGATGCTGATCAGAATTACGACTATGCC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000061545.7 |
||