Pregenerated sensors for C1QL2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000036907Ensembl transcript IDs: ENSMUST00000037286.12
Found 33 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | CCTAGGGCCGCCTGTCTAGTCCAATCAGCTTTCTCAAGTCTGGGCTaGCCCGCAACTAACCCCGCCAGAGCTGGGATTCTCGCCCAGCTC | + |
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Preference number: 1 (lower is better) Translates to: PRAACLVQSAFSSLG*PATNPARAGILAQL Trigger: GAGCTGGGCGAGAATCCCAGCTCTGGCGGGGTTAGTTGCGGGGCAGCCCAGACTTGAGAAAGCTGATTGGACTAGACAGGCGGCCCTAGG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000037286.12 |
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| 3UTR TCA 90 bp | AGAGCAGGGATGTGTCTTTTCCAACGGAGATGTCAGGAAGTGTCATaGAGCCGCAGAGTGACATTCACCAAAGAGCCCGCGCGCGCCCGA | + |
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Preference number: 1 (lower is better) Translates to: RAGMCLFQRRCQEVS*SRRVTFTKEPARAR Trigger: TCGGGCGCGCGCGGGCTCTTTGGTGAATGTCACTCTGCGGCTTCATGACACTTCCTGACATCTCCGTTGGAAAAGACACATCCCTGCTCT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000037286.12 |
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| 3UTR TCA 90 bp | ACACAGCCTCCCCGCAGCGTAGTGAATCCTAGACACACTGAGGCCTaGGGCAGGACAAGTAGGAGAGCAGGGATGTGTCTTTTCCAACGG | + |
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Preference number: 1 (lower is better) Translates to: TQPPRSVVNPRHTEA*GRTSRRAGMCLFQR Trigger: CCGTTGGAAAAGACACATCCCTGCTCTCCTACTTGTCCTGCCTCAGGCCTCAGTGTGTCTAGGATTCACTACGCTGCGGGGAGGCTGTGT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000037286.12 |
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| 3UTR TCA 90 bp | AAACATAATTTAATGCATGGCAGAGGAGGATATGGAGAGTGTGCATaGCAAGGTGAACTTTCTGTTTGTTGGAATTCTGCTAGGGGTGGA | + |
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Preference number: 1 (lower is better) Translates to: KHNLMHGRGGYGECA*QGELSVCWNSARGG Trigger: TCCACCCCTAGCAGAATTCCAACAAACAGAAAGTTCACCTTGTCATGCACACTCTCCATATCCTCCTCTGCCATGCATTAAATTATGTTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000037286.12 |
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| 3UTR-3UTR TCA 90 bp | CCGCCAGAGCTGGGATTCTCGCCCAGCTCCCCACTTGAATGTTCCCTCTCCCTCGGGGATGGGGTGGCCTaGAGCCACCCGGCCTCGCGC | + |
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Preference number: 2 (lower is better) Translates to: PPELGFSPSSPLECSLSLGDGVA*SHPASR Trigger: GCGCGAGGCCGGGTGGCTTCAGGCCACCCCATCCCC...GAGGGAGAGGGAACATTCAAGTGGGGAGCTGGGCGAGAATCCCAGCTCTGGCGG 69% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000037286.12 |
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| 3UTR-3UTR CCA 90 bp | GCACTGGGACCGGGGACACAGCCTCCCCGCAGCGTAGTGAATCCTAGACACACTCCGATGGGGATGGGGTaGCCTGAAGCCACCCGGCCT | + |
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Preference number: 2 (lower is better) Translates to: ALGPGTQPPRSVVNPRHTPMGMG*PEATRP Trigger: AGGCCGGGTGGCTTCAGGCCACCCCATCCCCATCGG...AGTGTGTCTAGGATTCACTACGCTGCGGGGAGGCTGTGTCCCCGGTCCCAGTGC 66% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000037286.12 |
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| 3UTR-3UTR TCA 90 bp | GCCCTTAACCGGGGGACACTGGAAGGAAGAGGCAAGCTGGGAGACCTCAAACTCGCCCAGCTCCCCACTTaGATGTTCCCTCTCCCTCCC | + |
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Preference number: 2 (lower is better) Translates to: ALNRGTLEGRGKLGDLKLAQLPT*MFPLPP Trigger: GGGAGGGAGAGGGAACATTCAAGTGGGGAGCTGGGC...GAGTTTGAGGTCTCCCAGCTTGCCTCTTCCTTCCAGTGTCCCCCGGTTAAGGGC 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000037286.12 |
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| 3UTR TCA 72 bp | AAGAGCCCGCGCGCGCCCGATGGGGATGGGGTGGCCTaGAGCCACCCGGCCTCGCGCGCGCCCTCTAGGCCC | + |
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Preference number: 3 (lower is better) Translates to: KSPRAPDGDGVA*SHPASRAPSRP Trigger: GGGCCTAGAGGGCGCGCGCGAGGCCGGGTGGCTTCAGGCCACCCCATCCCCATCGGGCGCGCGCGGGCTCTT 78% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000037286.12 |
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| 3UTR CCA 72 bp | CACCAAAGAGCCCGCGCGCGCCCGATGGGGATGGGGTaGCCTGAAGCCACCCGGCCTCGCGCGCGCCCTCTA | + |
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Preference number: 3 (lower is better) Translates to: HQRARARPMGMG*PEATRPRARPL Trigger: TAGAGGGCGCGCGCGAGGCCGGGTGGCTTCAGGCCACCCCATCCCCATCGGGCGCGCGCGGGCTCTTTGGTG 75% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000037286.12 |
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| 3UTR TCA 72 bp | CCCGCCAGAGCTGGGATTCTCGCCCAGCTCCCCACTTaGATGTTCCCTCTCCCTCCCCAGGATGGGCACTGG | + |
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Preference number: 3 (lower is better) Translates to: PARAGILAQLPT*MFPLPPQDGHW Trigger: CCAGTGCCCATCCTGGGGAGGGAGAGGGAACATTCAAGTGGGGAGCTGGGCGAGAATCCCAGCTCTGGCGGG 65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000037286.12 |
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| 3UTR-3UTR CAA 90 bp | TTCTTCCTTGTGAGTCTTGCAGCCCTTAACCGGGGGACACTGGAAGGAAGAGGCCGCCCAGCTCCCCACTaGAATGTTCCCTCTCCCTCC | + |
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Preference number: 3 (lower is better) Translates to: FFLVSLAALNRGTLEGRGRPAPH*NVPSPS Trigger: GGAGGGAGAGGGAACATTCAAGTGGGGAGCTGGGCG...GCCTCTTCCTTCCAGTGTCCCCCGGTTAAGGGCTGCAAGACTCACAAGGAAGAA 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000037286.12 |
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| 3UTR GCA 72 bp | GCCTGTCTAGTCCAATCAGCTTTCTCAAGTCTGGGCTaGCCCGCAACTAACCCCGCCAGAGCTGGGATTCTC | + |
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Preference number: 3 (lower is better) Translates to: ACLVQSAFSSLG*PATNPARAGIL Trigger: GAGAATCCCAGCTCTGGCGGGGTTAGTTGCGGGGCAGCCCAGACTTGAGAAAGCTGATTGGACTAGACAGGC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000037286.12 |
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| 3UTR TCA 72 bp | CGAGAGAGTAGCGGTCACCAGGGTCTTTCTTCCTTGTaGGTCTTGCAGCCCTTAACCGGGGGACACTGGAAG | + |
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Preference number: 3 (lower is better) Translates to: RESSGHQGLSSL*VLQPLTGGHWK Trigger: CTTCCAGTGTCCCCCGGTTAAGGGCTGCAAGACTCACAAGGAAGAAAGACCCTGGTGACCGCTACTCTCTCG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000037286.12 |
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| 3UTR TCA 72 bp | ATGTGTCTTTTCCAACGGAGATGTCAGGAAGTGTCATaGAGCCGCAGAGTGACATTCACCAAAGAGCCCGCG | + |
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Preference number: 3 (lower is better) Translates to: MCLFQRRCQEVS*SRRVTFTKEPA Trigger: CGCGGGCTCTTTGGTGAATGTCACTCTGCGGCTTCATGACACTTCCTGACATCTCCGTTGGAAAAGACACAT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000037286.12 |
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| CDS-3UTR GCA 90 bp | AACCGGGGGACACTGGAAGGAAGAGGCAAGCTGGGAGACCTCAAACTCCCTAGGCCCGAGGCCCTGGCTTaGCTGGTCGCCCCGGATCAC | + |
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Preference number: 4 (lower is better) Translates to: NRGTLEGRGKLGDLKLPRPEALA*LVAPDH Trigger: GTGATCCGGGGCGACCAGGCAAGCCAGGGCCTCGGG...CCTAGGGAGTTTGAGGTCTCCCAGCTTGCCTCTTCCTTCCAGTGTCCCCCGGTT 64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000037286.12 |
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| CDS-3UTR TCA 90 bp | GCCCTTAACCGGGGGACACTGGAAGGAAGAGGCAAGCTGGGAGACCTCAAACTCCGATCTTGGGACCGCTaGAGGCGGCGCTCAGCGCAC | + |
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Preference number: 4 (lower is better) Translates to: ALNRGTLEGRGKLGDLKLRSWDR*RRRSAH Trigger: GTGCGCTGAGCGCCGCCTTCAGCGGTCCCAAGATCG...GAGTTTGAGGTCTCCCAGCTTGCCTCTTCCTTCCAGTGTCCCCCGGTTAAGGGC 63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000037286.12 |
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| CDS-3UTR CCA 90 bp | CTAGTCCAATCAGCTTTCTCAAGTCTGGGCTGCCCCGCAACTAACCCCGCCAGAAGGCCCTGGCTTGCCTaGTCGCCCCGGATCACCCTT | + |
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Preference number: 4 (lower is better) Translates to: LVQSAFSSLGCPATNPARRPWLA*SPRITL Trigger: AAGGGTGATCCGGGGCGACCAGGCAAGCCAGGGCCT...TCTGGCGGGGTTAGTTGCGGGGCAGCCCAGACTTGAGAAAGCTGATTGGACTAG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000037286.12 |
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| CDS-3UTR CCA 90 bp | ACACTGGAAGGAAGAGGCAAGCTGGGAGACCTCAAACTCCCTAGGGCCGCCTGTCGGCGCTCAGCGCACTaGTCACTTCTCCCTCCGTGT | + |
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Preference number: 4 (lower is better) Translates to: TLEGRGKLGDLKLPRAACRRSAH*SLLPPC Trigger: ACACGGAGGGAGAAGTGACCAGTGCGCTGAGCGCCG...ACAGGCGGCCCTAGGGAGTTTGAGGTCTCCCAGCTTGCCTCTTCCTTCCAGTGT 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000037286.12 |
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| CDS-3UTR TCA 90 bp | AGGGCCGCCTGTCTAGTCCAATCAGCTTTCTCAAGTCTGGGCTGCCCCGCAACTCTTCGTGGGGGCTCTTaGGTCCCACGTAGAAGGCGA | + |
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Preference number: 4 (lower is better) Translates to: RAACLVQSAFSSLGCPATLRGGS*VPRRRR Trigger: TCGCCTTCTACGTGGGACTCAAGAGCCCCCACGAAG...AGTTGCGGGGCAGCCCAGACTTGAGAAAGCTGATTGGACTAGACAGGCGGCCCT 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000037286.12 |
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| CDS-3UTR GCA 90 bp | GCACTGGGACCGGGGACACAGCCTCCCCGCAGCGTAGTGAATCCTAGACACACTTCGCCTGAATCCAGGTaGAGTACCACGCTGTTGCTG | + |
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Preference number: 4 (lower is better) Translates to: ALGPGTQPPRSVVNPRHTSPESR*STTLLL Trigger: CAGCAACAGCGTGGTACTGCACCTGGATTCAGGCGA...AGTGTGTCTAGGATTCACTACGCTGCGGGGAGGCTGTGTCCCCGGTCCCAGTGC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000037286.12 |
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| CDS-3UTR GCA 90 bp | CTGCACAGGCATTTCGGGTCACAAAAAGGGAGGTCCGAGAGAGTAGCGGTCACCGCACCTGCCCGTTCTTaGAGAGATCCGCCCACATGC | + |
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Preference number: 4 (lower is better) Translates to: LHRHFGSQKGRSERVAVTAPARS*RDPPTC Trigger: GCATGTGGGCGGATCTCTGCAAGAACGGGCAGGTGC...GGTGACCGCTACTCTCTCGGACCTCCCTTTTTGTGACCCGAAATGCCTGTGCAG 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000037286.12 |
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| CDS-3UTR CCA 90 bp | GGACAAGTAGGAGAGCAGGGATGTGTCTTTTCCAACGGAGATGTCAGGAAGTGTCCGCGTCCTGGGCTATaGCGCTGGCTCGCACCTGCC | + |
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Preference number: 4 (lower is better) Translates to: GQVGEQGCVFSNGDVRKCPRPGL*RWLAPA Trigger: GGCAGGTGCGAGCCAGCGCCATAGCCCAGGACGCGG...ACACTTCCTGACATCTCCGTTGGAAAAGACACATCCCTGCTCTCCTACTTGTCC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000037286.12 |
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| CDS-3UTR GCA 90 bp | GAGCAGGGATGTGTCTTTTCCAACGGAGATGTCAGGAAGTGTCATGAAGCCGCATTGGCGCTGAGGTCCTaGATAACTTCCAGGGCAGCG | + |
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Preference number: 4 (lower is better) Translates to: EQGCVFSNGDVRKCHEAALALRS*ITSRAA Trigger: CGCTGCCCTGGAAGTTATGCAGGACCTCAGCGCCAA...TGCGGCTTCATGACACTTCCTGACATCTCCGTTGGAAAAGACACATCCCTGCTC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000037286.12 |
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| CDS-3UTR TCA 90 bp | TTTCCAACGGAGATGTCAGGAAGTGTCATGAAGCCGCAGAGTGACATTCACCAACCACGTCGTCGAACTTaGGCACCTCGTAGCCTTCGT | + |
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Preference number: 4 (lower is better) Translates to: FPTEMSGSVMKPQSDIHQPRRRT*APRSLR Trigger: ACGAAGGCTACGAGGTGCTCAAGTTCGACGACGTGG...TTGGTGAATGTCACTCTGCGGCTTCATGACACTTCCTGACATCTCCGTTGGAAA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000037286.12 |
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| CDS-3UTR GCA 90 bp | GGACAAGTAGGAGAGCAGGGATGTGTCTTTTCCAACGGAGATGTCAGGAAGTGTTGTACTTGTTATTGTTaGCGCCGTGAGCCTTCCCGC | + |
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Preference number: 4 (lower is better) Translates to: GQVGEQGCVFSNGDVRKCCTCYC*RREPSR Trigger: GCGGGAAGGCTCACGGCGGCAACAATAACAAGTACA...ACACTTCCTGACATCTCCGTTGGAAAAGACACATCCCTGCTCTCCTACTTGTCC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000037286.12 |
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| CDS-3UTR TCA 90 bp | TTTCCAACGGAGATGTCAGGAAGTGTCATGAAGCCGCAGAGTGACATTCACCAAGTAGACTTCATCGCCTaGATCCAGGTGCAGTACCAC | + |
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Preference number: 4 (lower is better) Translates to: FPTEMSGSVMKPQSDIHQVDFIA*IQVQYH Trigger: GTGGTACTGCACCTGGATTCAGGCGATGAAGTCTAC...TTGGTGAATGTCACTCTGCGGCTTCATGACACTTCCTGACATCTCCGTTGGAAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000037286.12 |
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| CDS-3UTR GCA 90 bp | TTTCCAACGGAGATGTCAGGAAGTGTCATGAAGCCGCAGAGTGACATTCACCAAGGAAGCCCGAGAACGTaGTGTACTTGTTATTGTTGC | + |
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Preference number: 4 (lower is better) Translates to: FPTEMSGSVMKPQSDIHQGSPRT*CTCYCC Trigger: GCAACAATAACAAGTACAGCACGTTCTCGGGCTTCC...TTGGTGAATGTCACTCTGCGGCTTCATGACACTTCCTGACATCTCCGTTGGAAA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000037286.12 |
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| CDS CCA 90 bp | GAGGTCCTGCATAACTTCCAGGGCAGCGGTACTGGGTCCCGGCGGTaGAGCCTTGGCGCCCGCGGGTCCCCCTGCGGGAGCGACGCTGTA | + |
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Preference number: 5 (lower is better) Translates to: EVLHNFQGSGTGSRR*SLGARGSPCGSDAV Trigger: TACAGCGTCGCTCCCGCAGGGGGACCCGCGGGCGCCAAGGCTCCACCGCCGGGACCCAGTACCGCTGCCCTGGAAGTTATGCAGGACCTC 71% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000037286.12 |
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| CDS GCA 90 bp | CCGCCACTCACCACTCCAACGCCACCGGCCGCGCTGGTTGTCAACTaGAGTCCGGGTAGCCCTGGCCTCCCCGAGTCTCCTTTCTCTCCC | + |
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Preference number: 5 (lower is better) Translates to: PPLTTPTPPAALVVN*SPGSPGLPESPFSP Trigger: GGGAGAGAAAGGAGACTCGGGGAGGCCAGGGCTACCCGGACTGCAGTTGACAACCAGCGCGGCCGGTGGCGTTGGAGTGGTGAGTGGCGG 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000037286.12 |
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| CDS-3UTR CAA 90 bp | GCACTGGGACCGGGGACACAGCCTCCCCGCAGCGTAGTGAATCCTAGACACACTCGCACCTGCCCGTTCTaGCAGAGATCCGCCCACATG | + |
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Preference number: 5 (lower is better) Translates to: ALGPGTQPPRSVVNPRHTRTCPF*QRSAHM Trigger: CATGTGGGCGGATCTCTGCAAGAACGGGCAGGTGCG...AGTGTGTCTAGGATTCACTACGCTGCGGGGAGGCTGTGTCCCCGGTCCCAGTGC 63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000037286.12 |
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| CDS CCA 72 bp | CCAGGGCAGCGGTACTGGGTCCCGGCGGTGGAGCCTTaGCGCCCGCGGGTCCCCCTGCGGGAGCGACGCTGT | + |
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Preference number: 6 (lower is better) Translates to: PGQRYWVPAVEP*RPRVPLRERRC Trigger: ACAGCGTCGCTCCCGCAGGGGGACCCGCGGGCGCCAAGGCTCCACCGCCGGGACCCAGTACCGCTGCCCTGG 78% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000037286.12 |
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| CDS CCA 72 bp | CATAACTTCCAGGGCAGCGGTACTGGGTCCCGGCGGTaGAGCCTTGGCGCCCGCGGGTCCCCCTGCGGGAGC | + |
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Preference number: 6 (lower is better) Translates to: HNFQGSGTGSRR*SLGARGSPCGS Trigger: GCTCCCGCAGGGGGACCCGCGGGCGCCAAGGCTCCACCGCCGGGACCCAGTACCGCTGCCCTGGAAGTTATG 74% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000037286.12 |
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| CDS GCA 72 bp | TCCCGGCGGTGGAGCCTTGGCGCCCGCGGGTCCCCCTaGGGGAGCGACGCTGTATGGGTCACAGATCATGCG | + |
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Preference number: 6 (lower is better) Translates to: SRRWSLGARGSP*GSDAVWVTDHA Trigger: CGCATGATCTGTGACCCATACAGCGTCGCTCCCGCAGGGGGACCCGCGGGCGCCAAGGCTCCACCGCCGGGA 72% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000037286.12 |
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