Pregenerated sensors for C1QL1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000045532Ensembl transcript IDs: ENSMUST00000057849.6
Found 36 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | GTGCAGGCTGGGACCAGGAAGGCAACCTGCCACCCGGGCCGGAACTaGGTGCGTGCGGGAAGAGGGGAGCTTTGTGTTCAGCGGAGGAAA | + |
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Preference number: 1 (lower is better) Translates to: VQAGTRKATCHPGRN*VRAGRGELCVQRRK Trigger: TTTCCTCCGCTGAACACAAAGCTCCCCTCTTCCCGCACGCACGCAGTTCCGGCCCGGGTGGCAGGTTGCCTTCCTGGTCCCAGCCTGCAC 66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000057849.6 |
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| 3UTR GCA 90 bp | CTATTGTACACATATACAGTGCAGGCTGGGACCAGGAAGGCAACCTaGCACCCGGGCCGGAACTGCGTGCGTGCGGGAAGAGGGGAGCTT | + |
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Preference number: 1 (lower is better) Translates to: LLYTYTVQAGTRKAT*HPGRNCVRAGRGEL Trigger: AAGCTCCCCTCTTCCCGCACGCACGCAGTTCCGGCCCGGGTGGCAGGTTGCCTTCCTGGTCCCAGCCTGCACTGTATATGTGTACAATAG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000057849.6 |
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| 3UTR CCA 90 bp | GTGCGTGCGGGAAGAGGGGAGCTTTGTGTTCAGCGGAGGAAAGACTaGGTGGTTGGACGCAGGCTAAGGACAATTCAGCCTGGGAGGGTC | + |
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Preference number: 1 (lower is better) Translates to: VRAGRGELCVQRRKD*VVGRRLRTIQPGRV Trigger: GACCCTCCCAGGCTGAATTGTCCTTAGCCTGCGTCCAACCACCCAGTCTTTCCTCCGCTGAACACAAAGCTCCCCTCTTCCCGCACGCAC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000057849.6 |
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| 3UTR CCA 90 bp | GGGGGCTCAGTAAACAGTCCTATTGTACACATATACAGTGCAGGCTaGGACCAGGAAGGCAACCTGCCACCCGGGCCGGAACTGCGTGCG | + |
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Preference number: 1 (lower is better) Translates to: GGSVNSPIVHIYSAG*DQEGNLPPGPELRA Trigger: CGCACGCAGTTCCGGCCCGGGTGGCAGGTTGCCTTCCTGGTCCCAGCCTGCACTGTATATGTGTACAATAGGACTGTTTACTGAGCCCCC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000057849.6 |
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| 3UTR-3UTR GCA 90 bp | CTAACCCACTCCTCCCCAAGGCAGGGTCACCCTACAGGAAGCAACCGCGCCAACTGTACACATATACAGTaGAGGCTGGGACCAGGAAGG | + |
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Preference number: 2 (lower is better) Translates to: LTHSSPRQGHPTGSNRANCTHIQ*RLGPGR Trigger: CCTTCCTGGTCCCAGCCTGCACTGTATATGTGTACA...GTTGGCGCGGTTGCTTCCTGTAGGGTGACCCTGCCTTGGGGAGGAGTGGGTTAG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000057849.6 |
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| 3UTR-3UTR CCA 90 bp | TGGTCAGACCGGGTGCAGCTGTTCCAGGGTTTTGTGGGTGCTGGGAAGCTATCCATATACAGTGCAGGCTaGGACCAGGAAGGCAACCTG | + |
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Preference number: 2 (lower is better) Translates to: WSDRVQLFQGFVGAGKLSIYSAG*DQEGNL Trigger: CAGGTTGCCTTCCTGGTCCCAGCCTGCACTGTATAT...GGATAGCTTCCCAGCACCCACAAAACCCTGGAACAGCTGCACCCGGTCTGACCA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000057849.6 |
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| 3UTR CAA 90 bp | TTTTATTATAGCTTTGGTCAGACCGGGTGCAGCTGTTCCAGGGTTTaGTGGGTGCTGGGAAGCTATCCAACCCCTAACCCACTCCTCCCC | + |
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Preference number: 2 (lower is better) Translates to: FYYSFGQTGCSCSRV*WVLGSYPTPNPLLP Trigger: GGGGAGGAGTGGGTTAGGGGTTGGATAGCTTCCCAGCACCCACAAAACCCTGGAACAGCTGCACCCGGTCTGACCAAAGCTATAATAAAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000057849.6 |
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| 3UTR-3UTR CCA 90 bp | TTTTATTATAGCTTTGGTCAGACCGGGTGCAGCTGTTCCAGGGTTTTGTGGGTGAAGGACAATTCAGCCTaGGAGGGTCGGCAGCCTTGG | + |
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Preference number: 2 (lower is better) Translates to: FYYSFGQTGCSCSRVLWVKDNSA*EGRQPW Trigger: CCAAGGCTGCCGACCCTCCCAGGCTGAATTGTCCTT...CACCCACAAAACCCTGGAACAGCTGCACCCGGTCTGACCAAAGCTATAATAAAA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000057849.6 |
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| 3UTR GCA 72 bp | CCAGGAAGGCAACCTGCCACCCGGGCCGGAACTGCGTaGGTGCGGGAAGAGGGGAGCTTTGTGTTCAGCGGA | + |
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Preference number: 3 (lower is better) Translates to: PGRQPATRAGTA*VREEGSFVFSG Trigger: TCCGCTGAACACAAAGCTCCCCTCTTCCCGCACGCACGCAGTTCCGGCCCGGGTGGCAGGTTGCCTTCCTGG 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000057849.6 |
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| 3UTR GCA 72 bp | ACATATACAGTGCAGGCTGGGACCAGGAAGGCAACCTaGCACCCGGGCCGGAACTGCGTGCGTGCGGGAAGA | + |
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Preference number: 3 (lower is better) Translates to: TYTVQAGTRKAT*HPGRNCVRAGR Trigger: TCTTCCCGCACGCACGCAGTTCCGGCCCGGGTGGCAGGTTGCCTTCCTGGTCCCAGCCTGCACTGTATATGT 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000057849.6 |
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| 3UTR GCA 72 bp | GTCAGACCGGGTGCAGCTGTTCCAGGGTTTTGTGGGTaGTGGGAAGCTATCCAACCCCTAACCCACTCCTCC | + |
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Preference number: 3 (lower is better) Translates to: VRPGAAVPGFCG*WEAIQPLTHSS Trigger: GGAGGAGTGGGTTAGGGGTTGGATAGCTTCCCAGCACCCACAAAACCCTGGAACAGCTGCACCCGGTCTGAC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000057849.6 |
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| 3UTR-3UTR CAA 90 bp | CTAACCCACTCCTCCCCAAGGCAGGGTCACCCTACAGGAAGCAACCGCGCCAACGGAGTGGATTCTTGTTaGCCTCTGAGGGGAGTCCAA | + |
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Preference number: 3 (lower is better) Translates to: LTHSSPRQGHPTGSNRANGVDSC*PLRGVQ Trigger: TTGGACTCCCCTCAGAGGCAAACAAGAATCCACTCC...GTTGGCGCGGTTGCTTCCTGTAGGGTGACCCTGCCTTGGGGAGGAGTGGGTTAG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000057849.6 |
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| 3UTR-3UTR CAA 90 bp | TCCTCCCCAAGGCAGGGTCACCCTACAGGAAGCAACCGCGCCAACTCCCTGCCCCCTTGGTCAGGCAATTaGAAAATGAGTAGGGGAGTG | + |
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Preference number: 3 (lower is better) Translates to: SSPRQGHPTGSNRANSLPPWSGN*KMSRGV Trigger: CACTCCCCTACTCATTTTCAAATTGCCTGACCAAGG...GGGCAGGGAGTTGGCGCGGTTGCTTCCTGTAGGGTGACCCTGCCTTGGGGAGGA 59% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000057849.6 |
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| 3UTR CCA 72 bp | TTTGGTCAGACCGGGTGCAGCTGTTCCAGGGTTTTGTaGGTGCTGGGAAGCTATCCAACCCCTAACCCACTC | + |
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Preference number: 3 (lower is better) Translates to: FGQTGCSCSRVL*VLGSYPTPNPL Trigger: GAGTGGGTTAGGGGTTGGATAGCTTCCCAGCACCCACAAAACCCTGGAACAGCTGCACCCGGTCTGACCAAA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000057849.6 |
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| 3UTR GCA 72 bp | GGGCTCAGTAAACAGTCCTATTGTACACATATACAGTaGAGGCTGGGACCAGGAAGGCAACCTGCCACCCGG | + |
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Preference number: 3 (lower is better) Translates to: GLSKQSYCTHIQ*RLGPGRQPATR Trigger: CCGGGTGGCAGGTTGCCTTCCTGGTCCCAGCCTGCACTGTATATGTGTACAATAGGACTGTTTACTGAGCCC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000057849.6 |
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| 3UTR CCA 72 bp | GGAAGAGGGGAGCTTTGTGTTCAGCGGAGGAAAGACTaGGTGGTTGGACGCAGGCTAAGGACAATTCAGCCT | + |
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Preference number: 3 (lower is better) Translates to: GRGELCVQRRKD*VVGRRLRTIQP Trigger: AGGCTGAATTGTCCTTAGCCTGCGTCCAACCACCCAGTCTTTCCTCCGCTGAACACAAAGCTCCCCTCTTCC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000057849.6 |
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| 3UTR CCA 72 bp | GTAAACAGTCCTATTGTACACATATACAGTGCAGGCTaGGACCAGGAAGGCAACCTGCCACCCGGGCCGGAA | + |
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Preference number: 3 (lower is better) Translates to: VNSPIVHIYSAG*DQEGNLPPGPE Trigger: TTCCGGCCCGGGTGGCAGGTTGCCTTCCTGGTCCCAGCCTGCACTGTATATGTGTACAATAGGACTGTTTAC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000057849.6 |
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| 3UTR-3UTR CAA 90 bp | GGGTCAAAATGTTTTTATTATAGCTTTGGTCAGACCGGGTGCAGCTGTTCCAGGGGGAAGAGGGGAGCTTaGTGTTCAGCGGAGGAAAGA | + |
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Preference number: 3 (lower is better) Translates to: GSKCFYYSFGQTGCSCSRGKRGA*CSAEER Trigger: TCTTTCCTCCGCTGAACACAAAGCTCCCCTCTTCCC...CCTGGAACAGCTGCACCCGGTCTGACCAAAGCTATAATAAAAACATTTTGACCC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt. Matches the following 1 transcripts: ENSMUST00000057849.6 |
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| CDS-3UTR CCA 90 bp | TCCTCCCCAAGGCAGGGTCACCCTACAGGAAGCAACCGCGCCAACTCCCTGCCCCGGCCCCACAGGACCTaGAGGGCCCCGGTCTCCTGG | + |
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Preference number: 4 (lower is better) Translates to: SSPRQGHPTGSNRANSLPRPHRT*RAPVSW Trigger: CCAGGAGACCGGGGCCCTCCAGGTCCTGTGGGGCCG...GGGCAGGGAGTTGGCGCGGTTGCTTCCTGTAGGGTGACCCTGCCTTGGGGAGGA 70% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000057849.6 |
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| CDS-3UTR CCA 90 bp | TCCTCCCCAAGGCAGGGTCACCCTACAGGAAGCAACCGCGCCAACTCCCTGCCCGTAGAAGGCCACGCGTaGCACCGTGGTATAGGTGGC | + |
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Preference number: 4 (lower is better) Translates to: SSPRQGHPTGSNRANSLPVEGHA*HRGIGG Trigger: GCCACCTATACCACGGTGCCACGCGTGGCCTTCTAC...GGGCAGGGAGTTGGCGCGGTTGCTTCCTGTAGGGTGACCCTGCCTTGGGGAGGA 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000057849.6 |
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| CDS-3UTR GCA 90 bp | CTAACCCACTCCTCCCCAAGGCAGGGTCACCCTACAGGAAGCAACCGCGCCAACTGCATCCTGGGCAATTaGACTGGCCCGCACCTGGCC | + |
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Preference number: 4 (lower is better) Translates to: LTHSSPRQGHPTGSNRANCILGN*TGPHLA Trigger: GGCCAGGTGCGGGCCAGTGCAATTGCCCAGGATGCA...GTTGGCGCGGTTGCTTCCTGTAGGGTGACCCTGCCTTGGGGAGGAGTGGGTTAG 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000057849.6 |
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| CDS-3UTR GCA 90 bp | TCCTCCCCAAGGCAGGGTCACCCTACAGGAAGCAACCGCGCCAACTCCCTGCCCGAAGACCTCATCCCCTaGGTCCAGATGCAGGATCAC | + |
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Preference number: 4 (lower is better) Translates to: SSPRQGHPTGSNRANSLPEDLIP*VQMQDH Trigger: GTGATCCTGCATCTGGACGCAGGGGATGAGGTCTTC...GGGCAGGGAGTTGGCGCGGTTGCTTCCTGTAGGGTGACCCTGCCTTGGGGAGGA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000057849.6 |
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| CDS-3UTR CCA 90 bp | TGGTCAGACCGGGTGCAGCTGTTCCAGGGTTTTGTGGGTGCTGGGAAGCTATCCCCTGGGCAATTGCACTaGCCCGCACCTGGCCGTTCT | + |
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Preference number: 4 (lower is better) Translates to: WSDRVQLFQGFVGAGKLSPGQLH*PAPGRS Trigger: AGAACGGCCAGGTGCGGGCCAGTGCAATTGCCCAGG...GGATAGCTTCCCAGCACCCACAAAACCCTGGAACAGCTGCACCCGGTCTGACCA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000057849.6 |
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| CDS-3UTR CCA 90 bp | GTCAGACCGGGTGCAGCTGTTCCAGGGTTTTGTGGGTGCTGGGAAGCTATCCAAGCACTGGCCCGCACCTaGCCGTTCTTGCAGAGGTCT | + |
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Preference number: 4 (lower is better) Translates to: VRPGAAVPGFCGCWEAIQALART*PFLQRS Trigger: AGACCTCTGCAAGAACGGCCAGGTGCGGGCCAGTGC...TTGGATAGCTTCCCAGCACCCACAAAACCCTGGAACAGCTGCACCCGGTCTGAC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000057849.6 |
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| CDS-3UTR GCA 90 bp | GTCAGACCGGGTGCAGCTGTTCCAGGGTTTTGTGGGTGCTGGGAAGCTATCCAAGCACCTGGCCGTTCTTaGAGAGGTCTGCCCACATAC | + |
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Preference number: 4 (lower is better) Translates to: VRPGAAVPGFCGCWEAIQAPGRS*RGLPTY Trigger: GTATGTGGGCAGACCTCTGCAAGAACGGCCAGGTGC...TTGGATAGCTTCCCAGCACCCACAAAACCCTGGAACAGCTGCACCCGGTCTGAC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000057849.6 |
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| CDS-3UTR GCA 90 bp | GTCAGACCGGGTGCAGCTGTTCCAGGGTTTTGTGGGTGCTGGGAAGCTATCCAAGCTGTTGCCCCCGTGTaGTTTGCCTCCATCCAGCTT | + |
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Preference number: 4 (lower is better) Translates to: VRPGAAVPGFCGCWEAIQAVAPV*FASIQL Trigger: AAGCTGGATGGAGGCAAAGCACACGGGGGCAACAGC...TTGGATAGCTTCCCAGCACCCACAAAACCCTGGAACAGCTGCACCCGGTCTGAC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000057849.6 |
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| CDS-3UTR GCA 90 bp | TTTGGTCAGACCGGGTGCAGCTGTTCCAGGGTTTTGTGGGTGCTGGGAAGCTATTCCCCTGCGTCCAGATaGAGGATCACGCTGTTGCTG | + |
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Preference number: 4 (lower is better) Translates to: FGQTGCSCSRVLWVLGSYSPASR*RITLLL Trigger: CAGCAACAGCGTGATCCTGCATCTGGACGCAGGGGA...ATAGCTTCCCAGCACCCACAAAACCCTGGAACAGCTGCACCCGGTCTGACCAAA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000057849.6 |
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| 3UTR CAA 72 bp | AGCTTTGGTCAGACCGGGTGCAGCTGTTCCAGGGTTTaGTGGGTGCTGGGAAGCTATCCAACCCCTAACCCA | + |
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Preference number: 4 (lower is better) Translates to: SFGQTGCSCSRV*WVLGSYPTPNP Trigger: TGGGTTAGGGGTTGGATAGCTTCCCAGCACCCACAAAACCCTGGAACAGCTGCACCCGGTCTGACCAAAGCT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000057849.6 |
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| CDS-3UTR CCA 90 bp | TTTTATTATAGCTTTGGTCAGACCGGGTGCAGCTGTTCCAGGGTTTTGTGGGTGAGGACCAGGCTTGCCTaGTTCACCCTTCTCCCCAGG | + |
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Preference number: 4 (lower is better) Translates to: FYYSFGQTGCSCSRVLWVRTRLA*FTLLPR Trigger: CCTGGGGAGAAGGGTGAACCAGGCAAGCCTGGTCCT...CACCCACAAAACCCTGGAACAGCTGCACCCGGTCTGACCAAAGCTATAATAAAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000057849.6 |
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| 3UTR CAA 72 bp | TCAGCCTGGGAGGGTCGGCAGCCTTGGTCAGGCAATTaGAAAATGAGTAGGGGAGTGGATTCTTGTTTGCCT | + |
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Preference number: 4 (lower is better) Translates to: SAWEGRQPWSGN*KMSRGVDSCLP Trigger: AGGCAAACAAGAATCCACTCCCCTACTCATTTTCAAATTGCCTGACCAAGGCTGCCGACCCTCCCAGGCTGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000057849.6 |
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| CDS-3UTR TCA 90 bp | CCTTGGTCAGGCAATTTGAAAATGAGTAGGGGAGTGGATTCTTGTTTGCCTCTGCCTCATGAGGGTTCTTaGGGCCGGCGTAGAAGGCCA | + |
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Preference number: 4 (lower is better) Translates to: PWSGNLKMSRGVDSCLPLPHEGS*GRRRRP Trigger: TGGCCTTCTACGCCGGCCTCAAGAACCCTCATGAGG...CAGAGGCAAACAAGAATCCACTCCCCTACTCATTTTCAAATTGCCTGACCAAGG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000057849.6 |
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| CDS-3UTR GCA 90 bp | TTTTATTATAGCTTTGGTCAGACCGGGTGCAGCTGTTCCAGGGTTTTGTGGGTGTGTATTTGTTGCTGTTaGCCCCGTGTGCTTTGCCTC | + |
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Preference number: 4 (lower is better) Translates to: FYYSFGQTGCSCSRVLWVCICCC*PRVLCL Trigger: GAGGCAAAGCACACGGGGGCAACAGCAACAAATACA...CACCCACAAAACCCTGGAACAGCTGCACCCGGTCTGACCAAAGCTATAATAAAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000057849.6 |
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| CDS-3UTR CAA 90 bp | CTAACCCACTCCTCCCCAAGGCAGGGTCACCCTACAGGAAGCAACCGCGCCAACGAGAAAGTGCTGTATTaGTTGCTGTTGCCCCCGTGT | + |
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Preference number: 5 (lower is better) Translates to: LTHSSPRQGHPTGSNRANEKVLY*LLLPPC Trigger: ACACGGGGGCAACAGCAACAAATACAGCACTTTCTC...GTTGGCGCGGTTGCTTCCTGTAGGGTGACCCTGCCTTGGGGAGGAGTGGGTTAG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000057849.6 |
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| CDS-3UTR CAA 90 bp | GCTAAGGACAATTCAGCCTGGGAGGGTCGGCAGCCTTGGTCAGGCAATTTGAAACGCACCTGGCCGTTCTaGCAGAGGTCTGCCCACATA | + |
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Preference number: 5 (lower is better) Translates to: AKDNSAWEGRQPWSGNLKRTWPF*QRSAHI Trigger: TATGTGGGCAGACCTCTGCAAGAACGGCCAGGTGCG...TTTCAAATTGCCTGACCAAGGCTGCCGACCCTCCCAGGCTGAATTGTCCTTAGC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000057849.6 |
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| CDS-3UTR CAA 90 bp | TTTTATTATAGCTTTGGTCAGACCGGGTGCAGCTGTTCCAGGGTTTTGTGGGTGCTGCATCCTGGGCAATaGCACTGGCCCGCACCTGGC | + |
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Preference number: 5 (lower is better) Translates to: FYYSFGQTGCSCSRVLWVLHPGQ*HWPAPG Trigger: GCCAGGTGCGGGCCAGTGCAATTGCCCAGGATGCAG...CACCCACAAAACCCTGGAACAGCTGCACCCGGTCTGACCAAAGCTATAATAAAA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000057849.6 |
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| CDS-3UTR CAA 90 bp | TATTGTACACATATACAGTGCAGGCTGGGACCAGGAAGGCAACCTGCCACCCGGAAAGTGCTGTATTTGTaGCTGTTGCCCCCGTGTGCT | + |
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Preference number: 5 (lower is better) Translates to: YCTHIQCRLGPGRQPATRKVLYL*LLPPCA Trigger: AGCACACGGGGGCAACAGCAACAAATACAGCACTTT...CCGGGTGGCAGGTTGCCTTCCTGGTCCCAGCCTGCACTGTATATGTGTACAATA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000057849.6 |
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