Pregenerated sensors for C1QC (Mus musculus)
Ensembl gene IDs: ENSMUSG00000036896Ensembl transcript IDs: ENSMUST00000046332.6
Found 37 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR CCA 90 bp | CATAAGGTATTGATAAATGGCCACAGGAATAATACCATTAGGTGGTTCCCAGAGAGCGAGGTGGGTGGCTaGGGGCTGGAAGCAGCCTGC | + |
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Preference number: 2 (lower is better) Translates to: HKVLINGHRNNTIRWFPESEVGG*GLEAAC Trigger: GCAGGCTGCTTCCAGCCCCCAGCCACCCACCTCGCT...CTCTGGGAACCACCTAATGGTATTATTCCTGTGGCCATTTATCAATACCTTATG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046332.6 |
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| 3UTR-3UTR CCA 90 bp | CATAAGGTATTGATAAATGGCCACAGGAATAATACCATTAGGTGGTTCCCAGAGAGGGAGCGAGGTGGGTaGCTGGGGGCTGGAAGCAGC | + |
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Preference number: 2 (lower is better) Translates to: HKVLINGHRNNTIRWFPERERGG*LGAGSS Trigger: GCTGCTTCCAGCCCCCAGCCACCCACCTCGCTCCCT...CTCTGGGAACCACCTAATGGTATTATTCCTGTGGCCATTTATCAATACCTTATG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000046332.6 |
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| CDS-3UTR GCA 90 bp | CTGAGGAGATACAGGGCCGATGGATCAGGAACCAGGGTGGACTTCCTGGAGGAACAGGGGCCCCCGGCATaGCTGGCATCCCTGGGATCC | + |
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Preference number: 4 (lower is better) Translates to: LRRYRADGSGTRVDFLEEQGPPA*LASLGS Trigger: GGATCCCAGGGATGCCAGGCATGCCGGGGGCCCCTG...TTCCTCCAGGAAGTCCACCCTGGTTCCTGATCCATCGGCCCTGTATCTCCTCAG 63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000046332.6 |
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| CDS-3UTR CCA 90 bp | GTTCCCAGAGAAACTCTGAGGAGATACAGGGCCGATGGATCAGGAACCAGGGTGGACGGCTGGGATTCCTaGCTCTCCCTTGGGCCCCTG | + |
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Preference number: 4 (lower is better) Translates to: VPRETLRRYRADGSGTRVDGWDS*LSLGPL Trigger: CAGGGGCCCAAGGGAGAGCCAGGAATCCCAGCCGTC...CACCCTGGTTCCTGATCCATCGGCCCTGTATCTCCTCAGAGTTTCTCTGGGAAC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046332.6 |
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| CDS-3UTR CCA 90 bp | CTGAGGAGATACAGGGCCGATGGATCAGGAACCAGGGTGGACTTCCTGGAGGAAGGTCCCAGGGACGGCTaGGATTCCTGGCTCTCCCTT | + |
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Preference number: 4 (lower is better) Translates to: LRRYRADGSGTRVDFLEEGPRDG*DSWLSL Trigger: AAGGGAGAGCCAGGAATCCCAGCCGTCCCTGGGACC...TTCCTCCAGGAAGTCCACCCTGGTTCCTGATCCATCGGCCCTGTATCTCCTCAG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046332.6 |
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| CDS-3UTR CCA 90 bp | GGAATAATACCATTAGGTGGTTCCCAGAGAAACTCTGAGGAGATACAGGGCCGATCGGCCCTCCACACCTaGCTCCCCCGGAGGCCCCCT | + |
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Preference number: 4 (lower is better) Translates to: GIIPLGGSQRNSEEIQGRSALHT*LPRRPP Trigger: AGGGGGCCTCCGGGGGAGCCAGGTGTGGAGGGCCGA...TCGGCCCTGTATCTCCTCAGAGTTTCTCTGGGAACCACCTAATGGTATTATTCC 59% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000046332.6 |
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| CDS-3UTR TCA 90 bp | GTTCCCAGAGAAACTCTGAGGAGATACAGGGCCGATGGATCAGGAACCAGGGTGCCACCCTGGCAAGGTTaGGGTTCAGGTGCACGCACA | + |
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Preference number: 4 (lower is better) Translates to: VPRETLRRYRADGSGTRVPPWQG*GSGART Trigger: TGTGCGTGCACCTGAACCTCAACCTTGCCAGGGTGG...CACCCTGGTTCCTGATCCATCGGCCCTGTATCTCCTCAGAGTTTCTCTGGGAAC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046332.6 |
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| CDS-3UTR CCA 90 bp | GTTCCCAGAGAAACTCTGAGGAGATACAGGGCCGATGGATCAGGAACCAGGGTGCATGCCTGGCATCCCTaGGATCCCATAGCAGCCAGC | + |
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Preference number: 4 (lower is better) Translates to: VPRETLRRYRADGSGTRVHAWHP*DPIAAS Trigger: GCTGGCTGCTATGGGATCCCAGGGATGCCAGGCATG...CACCCTGGTTCCTGATCCATCGGCCCTGTATCTCCTCAGAGTTTCTCTGGGAAC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046332.6 |
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| CDS-3UTR CCA 90 bp | ATAATACCATTAGGTGGTTCCCAGAGAAACTCTGAGGAGATACAGGGCCGATGGCAGCCAGCGCTGGCCTaGCTCCTGAGTGGTAGGGCC | + |
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Preference number: 4 (lower is better) Translates to: IIPLGGSQRNSEEIQGRWQPALA*LLSGRA Trigger: GGCCCTACCACTCAGGAGCCAGGCCAGCGCTGGCTG...CCATCGGCCCTGTATCTCCTCAGAGTTTCTCTGGGAACCACCTAATGGTATTAT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046332.6 |
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| CDS-3UTR CCA 90 bp | CTGAGGAGATACAGGGCCGATGGATCAGGAACCAGGGTGGACTTCCTGGAGGAAGGTGCACGCACAGGTTaGCCGTATGCGATGTGTAGT | + |
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Preference number: 4 (lower is better) Translates to: LRRYRADGSGTRVDFLEEGARTG*PYAMCS Trigger: ACTACACATCGCATACGGCCAACCTGTGCGTGCACC...TTCCTCCAGGAAGTCCACCCTGGTTCCTGATCCATCGGCCCTGTATCTCCTCAG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046332.6 |
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| CDS-3UTR CCA 90 bp | GGAATAATACCATTAGGTGGTTCCCAGAGAAACTCTGAGGAGATACAGGGCCGAGGCCCCCGGCATGCCTaGCATCCCTGGGATCCCATA | + |
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Preference number: 4 (lower is better) Translates to: GIIPLGGSQRNSEEIQGRGPRHA*HPWDPI Trigger: TATGGGATCCCAGGGATGCCAGGCATGCCGGGGGCC...TCGGCCCTGTATCTCCTCAGAGTTTCTCTGGGAACCACCTAATGGTATTATTCC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000046332.6 |
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| CDS-3UTR CCA 90 bp | GGTGGTTCCCAGAGAAACTCTGAGGAGATACAGGGCCGATGGATCAGGAACCAGCAGAGAAGACGCTGTTaGAGCCCTCTATGCCCACCA | + |
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Preference number: 4 (lower is better) Translates to: GGSQRNSEEIQGRWIRNQQRRRC*SPLCPP Trigger: TGGTGGGCATAGAGGGCTCCAACAGCGTCTTCTCTG...CTGGTTCCTGATCCATCGGCCCTGTATCTCCTCAGAGTTTCTCTGGGAACCACC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046332.6 |
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| CDS-3UTR TCA 90 bp | CTGAGGAGATACAGGGCCGATGGATCAGGAACCAGGGTGGACTTCCTGGAGGAATGCCATTGTAGTCATTaGCTGATAGCCACACCTCAT | + |
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Preference number: 4 (lower is better) Translates to: LRRYRADGSGTRVDFLEECHCSH*LIATPH Trigger: ATGAGGTGTGGCTATCAGTCAATGACTACAATGGCA...TTCCTCCAGGAAGTCCACCCTGGTTCCTGATCCATCGGCCCTGTATCTCCTCAG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046332.6 |
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| CDS-3UTR GCA 90 bp | GGAATAATACCATTAGGTGGTTCCCAGAGAAACTCTGAGGAGATACAGGGCCGATGTTGGAGCCCTCTATaGCCACCATGCCATTGTAGT | + |
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Preference number: 4 (lower is better) Translates to: GIIPLGGSQRNSEEIQGRCWSPL*PPCHCS Trigger: ACTACAATGGCATGGTGGGCATAGAGGGCTCCAACA...TCGGCCCTGTATCTCCTCAGAGTTTCTCTGGGAACCACCTAATGGTATTATTCC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046332.6 |
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| CDS-3UTR CCA 90 bp | TCTCATAAGGTATTGATAAATGGCCACAGGAATAATACCATTAGGTGGTTCCCATCTCCCTTGGGCCCCTaGAGTCCATCATGCCCGTCC | + |
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Preference number: 4 (lower is better) Translates to: SHKVLINGHRNNTIRWFPSPLGP*SPSCPS Trigger: GGACGGGCATGATGGACTCCAGGGGCCCAAGGGAGA...TGGGAACCACCTAATGGTATTATTCCTGTGGCCATTTATCAATACCTTATGAGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046332.6 |
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| CDS-3UTR CCA 90 bp | CATAAGGTATTGATAAATGGCCACAGGAATAATACCATTAGGTGGTTCCCAGAGACCCTGAGGTCCCCCTaGGGCCATTTTTCCCACGGT | + |
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Preference number: 4 (lower is better) Translates to: HKVLINGHRNNTIRWFPETLRSP*GHFSHG Trigger: ACCGTGGGAAAAATGGCCCCAGGGGGACCTCAGGGT...CTCTGGGAACCACCTAATGGTATTATTCCTGTGGCCATTTATCAATACCTTATG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000046332.6 |
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| CDS TCA 90 bp | GGGCCATTTTTCCCACGGTGGCCAGGCATGCCAGGCTCGCCCTTCTaGCCCTTGGGTCCTCGGGTCCCAGGGACGGCTGGGATTCCTGGC | + |
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Preference number: 5 (lower is better) Translates to: GPFFPRWPGMPGSPF*PLGPRVPGTAGIPG Trigger: GCCAGGAATCCCAGCCGTCCCTGGGACCCGAGGACCCAAGGGTCAGAAGGGCGAGCCTGGCATGCCTGGCCACCGTGGGAAAAATGGCCC 68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000046332.6 |
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| CDS CCA 90 bp | TTTTCCCACGGTGGCCAGGCATGCCAGGCTCGCCCTTCTGACCCTTaGGTCCTCGGGTCCCAGGGACGGCTGGGATTCCTGGCTCTCCCT | + |
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Preference number: 5 (lower is better) Translates to: FSHGGQACQARPSDP*VLGSQGRLGFLALP Trigger: AGGGAGAGCCAGGAATCCCAGCCGTCCCTGGGACCCGAGGACCCAAGGGTCAGAAGGGCGAGCCTGGCATGCCTGGCCACCGTGGGAAAA 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046332.6 |
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| CDS GCA 90 bp | TCATCGCCCCTCTGGAGCCGCAGGAGGACTCCTCCGGAGCTGACCTaGTTGCTGTTGAACATGTGGTCGCAGAAGCTGGCCACCCTGGCA | + |
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Preference number: 5 (lower is better) Translates to: SSPLWSRRRTPPELT*LLLNMWSQKLATLA Trigger: TGCCAGGGTGGCCAGCTTCTGCGACCACATGTTCAACAGCAAGCAGGTCAGCTCCGGAGGAGTCCTCCTGCGGCTCCAGAGGGGCGATGA 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046332.6 |
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| CDS CCA 90 bp | CGCAGGAGGACTCCTCCGGAGCTGACCTGCTTGCTGTTGAACATGTaGTCGCAGAAGCTGGCCACCCTGGCAAGGTTGAGGTTCAGGTGC | + |
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Preference number: 5 (lower is better) Translates to: RRRTPPELTCLLLNM*SQKLATLARLRFRC Trigger: GCACCTGAACCTCAACCTTGCCAGGGTGGCCAGCTTCTGCGACCACATGTTCAACAGCAAGCAGGTCAGCTCCGGAGGAGTCCTCCTGCG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046332.6 |
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| CDS CCA 90 bp | AGGGTTGGTGACCACAGAGTTGAACCTGACGAGGGCGTTGGCCTCTaGGTACTGGGTGGTCTGCCGGGTGACTGTGAATACCGACTGGTG | + |
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Preference number: 5 (lower is better) Translates to: RVGDHRVEPDEGVGL*VLGGLPGDCEYRLV Trigger: CACCAGTCGGTATTCACAGTCACCCGGCAGACCACCCAGTACCCAGAGGCCAACGCCCTCGTCAGGTTCAACTCTGTGGTCACCAACCCT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046332.6 |
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| CDS-3UTR CAA 90 bp | GTTCCCAGAGAAACTCTGAGGAGATACAGGGCCGATGGATCAGGAACCAGGGTGAACCTGACGAGGGCGTaGGCCTCTGGGTACTGGGTG | + |
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Preference number: 5 (lower is better) Translates to: VPRETLRRYRADGSGTRVNLTRA*ASGYWV Trigger: CACCCAGTACCCAGAGGCCAACGCCCTCGTCAGGTT...CACCCTGGTTCCTGATCCATCGGCCCTGTATCTCCTCAGAGTTTCTCTGGGAAC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046332.6 |
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| CDS-3UTR CAA 90 bp | GTTCCCAGAGAAACTCTGAGGAGATACAGGGCCGATGGATCAGGAACCAGGGTGGCCACCCTGGCAAGGTaGAGGTTCAGGTGCACGCAC | + |
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Preference number: 5 (lower is better) Translates to: VPRETLRRYRADGSGTRVATLAR*RFRCTH Trigger: GTGCGTGCACCTGAACCTCAACCTTGCCAGGGTGGC...CACCCTGGTTCCTGATCCATCGGCCCTGTATCTCCTCAGAGTTTCTCTGGGAAC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046332.6 |
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| CDS TCA 90 bp | AGACGCTGTTGGAGCCCTCTATGCCCACCATGCCATTGTAGTCATTaGCTGATAGCCACACCTCATCGCCCCTCTGGAGCCGCAGGAGGA | + |
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Preference number: 5 (lower is better) Translates to: RRCWSPLCPPCHCSH*LIATPHRPSGAAGG Trigger: TCCTCCTGCGGCTCCAGAGGGGCGATGAGGTGTGGCTATCAGTCAATGACTACAATGGCATGGTGGGCATAGAGGGCTCCAACAGCGTCT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046332.6 |
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| CDS-3UTR CAA 90 bp | GGTGGTTCCCAGAGAAACTCTGAGGAGATACAGGGCCGATGGATCAGGAACCAGCCGGAGCTGACCTGCTaGCTGTTGAACATGTGGTCG | + |
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Preference number: 5 (lower is better) Translates to: GGSQRNSEEIQGRWIRNQPELTC*LLNMWS Trigger: CGACCACATGTTCAACAGCAAGCAGGTCAGCTCCGG...CTGGTTCCTGATCCATCGGCCCTGTATCTCCTCAGAGTTTCTCTGGGAACCACC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046332.6 |
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| CDS-3UTR CAA 90 bp | ATAATACCATTAGGTGGTTCCCAGAGAAACTCTGAGGAGATACAGGGCCGATGGCCAGAGAAGACGCTGTaGGAGCCCTCTATGCCCACC | + |
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Preference number: 5 (lower is better) Translates to: IIPLGGSQRNSEEIQGRWPEKTL*EPSMPT Trigger: GGTGGGCATAGAGGGCTCCAACAGCGTCTTCTCTGG...CCATCGGCCCTGTATCTCCTCAGAGTTTCTCTGGGAACCACCTAATGGTATTAT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046332.6 |
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| CDS-3UTR CAA 90 bp | CATAAGGTATTGATAAATGGCCACAGGAATAATACCATTAGGTGGTTCCCAGAGTTGGTGACCACAGAGTaGAACCTGACGAGGGCGTTG | + |
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Preference number: 5 (lower is better) Translates to: HKVLINGHRNNTIRWFPELVTTE*NLTRAL Trigger: CAACGCCCTCGTCAGGTTCAACTCTGTGGTCACCAA...CTCTGGGAACCACCTAATGGTATTATTCCTGTGGCCATTTATCAATACCTTATG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046332.6 |
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| CDS CCA 72 bp | GTCCTTCCCAGGGGCCCCCGGCATGCCTGGCATCCCTaGGATCCCATAGCAGCCAGCGCTGGCCTGGCTCCT | + |
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Preference number: 6 (lower is better) Translates to: VLPRGPRHAWHP*DPIAASAGLAP Trigger: AGGAGCCAGGCCAGCGCTGGCTGCTATGGGATCCCAGGGATGCCAGGCATGCCGGGGGCCCCTGGGAAGGAC 71% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000046332.6 |
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| CDS CAA 90 bp | TGGGTGGTCTGCCGGGTGACTGTGAATACCGACTGGTGCTTCTGTTaGTATCGGCCCTCCACACCTGGCTCCCCCGGAGGCCCCCTGGGG | + |
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Preference number: 6 (lower is better) Translates to: WVVCRVTVNTDWCFC*YRPSTPGSPGGPLG Trigger: CCCCAGGGGGCCTCCGGGGGAGCCAGGTGTGGAGGGCCGATACAAACAGAAGCACCAGTCGGTATTCACAGTCACCCGGCAGACCACCCA 66% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000046332.6 |
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| CDS CAA 90 bp | TCGCCCCTCTGGAGCCGCAGGAGGACTCCTCCGGAGCTGACCTGCTaGCTGTTGAACATGTGGTCGCAGAAGCTGGCCACCCTGGCAAGG | + |
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Preference number: 6 (lower is better) Translates to: SPLWSRRRTPPELTC*LLNMWSQKLATLAR Trigger: CCTTGCCAGGGTGGCCAGCTTCTGCGACCACATGTTCAACAGCAAGCAGGTCAGCTCCGGAGGAGTCCTCCTGCGGCTCCAGAGGGGCGA 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046332.6 |
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| CDS TCA 72 bp | CTGGGATCCCATAGCAGCCAGCGCTGGCCTGGCTCCTaGGTGGTAGGGCCAGAAGAAACAGCAGCAGCAGGC | + |
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Preference number: 6 (lower is better) Translates to: LGSHSSQRWPGS*VVGPEETAAAG Trigger: GCCTGCTGCTGCTGTTTCTTCTGGCCCTACCACTCAGGAGCCAGGCCAGCGCTGGCTGCTATGGGATCCCAG 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046332.6 |
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| CDS CAA 72 bp | TGCCGGGTGACTGTGAATACCGACTGGTGCTTCTGTTaGTATCGGCCCTCCACACCTGGCTCCCCCGGAGGC | + |
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Preference number: 6 (lower is better) Translates to: CRVTVNTDWCFC*YRPSTPGSPGG Trigger: GCCTCCGGGGGAGCCAGGTGTGGAGGGCCGATACAAACAGAAGCACCAGTCGGTATTCACAGTCACCCGGCA 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000046332.6 |
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| CDS CAA 72 bp | GGGTTGGTGACCACAGAGTTGAACCTGACGAGGGCGTaGGCCTCTGGGTACTGGGTGGTCTGCCGGGTGACT | + |
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Preference number: 6 (lower is better) Translates to: GLVTTELNLTRA*ASGYWVVCRVT Trigger: AGTCACCCGGCAGACCACCCAGTACCCAGAGGCCAACGCCCTCGTCAGGTTCAACTCTGTGGTCACCAACCC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046332.6 |
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| CDS CAA 72 bp | CGCAGGAGGACTCCTCCGGAGCTGACCTGCTTGCTGTaGAACATGTGGTCGCAGAAGCTGGCCACCCTGGCA | + |
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Preference number: 6 (lower is better) Translates to: RRRTPPELTCLL*NMWSQKLATLA Trigger: TGCCAGGGTGGCCAGCTTCTGCGACCACATGTTCAACAGCAAGCAGGTCAGCTCCGGAGGAGTCCTCCTGCG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046332.6 |
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| CDS CCA 72 bp | GACCACAGAGTTGAACCTGACGAGGGCGTTGGCCTCTaGGTACTGGGTGGTCTGCCGGGTGACTGTGAATAC | + |
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Preference number: 6 (lower is better) Translates to: DHRVEPDEGVGL*VLGGLPGDCEY Trigger: GTATTCACAGTCACCCGGCAGACCACCCAGTACCCAGAGGCCAACGCCCTCGTCAGGTTCAACTCTGTGGTC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046332.6 |
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| CDS CCA 72 bp | ACTCCTCCGGAGCTGACCTGCTTGCTGTTGAACATGTaGTCGCAGAAGCTGGCCACCCTGGCAAGGTTGAGG | + |
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Preference number: 6 (lower is better) Translates to: TPPELTCLLLNM*SQKLATLARLR Trigger: CCTCAACCTTGCCAGGGTGGCCAGCTTCTGCGACCACATGTTCAACAGCAAGCAGGTCAGCTCCGGAGGAGT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046332.6 |
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| CDS CCA 72 bp | AGTCGGGAAACAGTAGGAAACCAGAGAAGACGCTGTTaGAGCCCTCTATGCCCACCATGCCATTGTAGTCAT | + |
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Preference number: 6 (lower is better) Translates to: SRETVGNQRRRC*SPLCPPCHCSH Trigger: ATGACTACAATGGCATGGTGGGCATAGAGGGCTCCAACAGCGTCTTCTCTGGTTTCCTACTGTTTCCCGACT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046332.6 |
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