Pregenerated sensors for C1QB (Mus musculus)
Ensembl gene IDs: ENSMUSG00000036905Ensembl transcript IDs: ENSMUST00000046384.9
Found 41 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | AGTTTATTGACCCATTCGTTCTGTAACATCTACAGGGCTCTGGTCTaGGTTTCAGGCAGTCAAGGGGGTGATGTCAGGGGTCCAGGGAGG | + |
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Preference number: 1 (lower is better) Translates to: SLLTHSFCNIYRALV*VSGSQGGDVRGPGR Trigger: CCTCCCTGGACCCCTGACATCACCCCCTTGACTGCCTGAAACCCAGACCAGAGCCCTGTAGATGTTACAGAACGAATGGGTCAATAAACT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000046384.9 |
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| 3UTR-3UTR CCA 90 bp | AGGGCTCTGGTCTGGGTTTCAGGCAGTCAAGGGGGTGATGTCAGGGGTCCAGGGAGGGAGGCAGGAAGATaGTGTTGGATAGGTGTAATT | + |
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Preference number: 2 (lower is better) Translates to: RALVWVSGSQGGDVRGPGREAGR*CWIGVI Trigger: AATTACACCTATCCAACACCATCTTCCTGCCTCCCT...CCCTGGACCCCTGACATCACCCCCTTGACTGCCTGAAACCCAGACCAGAGCCCT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000046384.9 |
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| 3UTR TCA 72 bp | CAGGGCTCTGGTCTGGGTTTCAGGCAGTCAAGGGGGTaGTGTCAGGGGTCCAGGGAGGATTGCTGGCAGGGA | + |
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Preference number: 3 (lower is better) Translates to: QGSGLGFRQSRG*CQGSREDCWQG Trigger: TCCCTGCCAGCAATCCTCCCTGGACCCCTGACATCACCCCCTTGACTGCCTGAAACCCAGACCAGAGCCCTG 62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000046384.9 |
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| 3UTR CCA 72 bp | ACCCATTCGTTCTGTAACATCTACAGGGCTCTGGTCTaGGTTTCAGGCAGTCAAGGGGGTGATGTCAGGGGT | + |
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Preference number: 3 (lower is better) Translates to: THSFCNIYRALV*VSGSQGGDVRG Trigger: ACCCCTGACATCACCCCCTTGACTGCCTGAAACCCAGACCAGAGCCCTGTAGATGTTACAGAACGAATGGGT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000046384.9 |
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| CDS-3UTR GCA 90 bp | CTGGTCTGGGTTTCAGGCAGTCAAGGGGGTGATGTCAGGGGTCCAGGGAGGATTGGGGCCCGGTGCAGCTaGTTTGGGCCCAGGACACAT | + |
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Preference number: 4 (lower is better) Translates to: LVWVSGSQGGDVRGPGRIGARCS*FGPRTH Trigger: ATGTGTCCTGGGCCCAAAGCAGCTGCACCGGGCCCC...AATCCTCCCTGGACCCCTGACATCACCCCCTTGACTGCCTGAAACCCAGACCAG 62% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000046384.9 |
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| CDS-3UTR GCA 90 bp | TGTAACATCTACAGGGCTCTGGTCTGGGTTTCAGGCAGTCAAGGGGGTGATGTCTGCCAGGGGGCCCGGTaGAGCTGCTTTGGGCCCAGG | + |
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Preference number: 4 (lower is better) Translates to: CNIYRALVWVSGSQGGDVCQGAR*SCFGPR Trigger: CCTGGGCCCAAAGCAGCTGCACCGGGCCCCCTGGCA...GACATCACCCCCTTGACTGCCTGAAACCCAGACCAGAGCCCTGTAGATGTTACA 61% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000046384.9 |
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| CDS-3UTR GCA 90 bp | TGTAACATCTACAGGGCTCTGGTCTGGGTTTCAGGCAGTCAAGGGGGTGATGTCCAGGGATGCCAGGGATaGCAGGGGGCCCGGTGCAGC | + |
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Preference number: 4 (lower is better) Translates to: CNIYRALVWVSGSQGGDVQGCQG*QGARCS Trigger: GCTGCACCGGGCCCCCTGGCATCCCTGGCATCCCTG...GACATCACCCCCTTGACTGCCTGAAACCCAGACCAGAGCCCTGTAGATGTTACA 61% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000046384.9 |
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| CDS-3UTR CCA 90 bp | CAAGGGGGTGATGTCAGGGGTCCAGGGAGGATTGCTGGCAGGGAGGCAGGAAGACTCCCCCTTTATCCCTaGAGTGCCTGGTTGGCCATC | + |
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Preference number: 4 (lower is better) Translates to: QGGDVRGPGRIAGREAGRLPLYP*SAWLAI Trigger: GATGGCCAACCAGGCACTCCAGGGATAAAGGGGGAG...TCTTCCTGCCTCCCTGCCAGCAATCCTCCCTGGACCCCTGACATCACCCCCTTG 61% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000046384.9 |
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| CDS-3UTR TCA 90 bp | TCTACAGGGCTCTGGTCTGGGTTTCAGGCAGTCAAGGGGGTGATGTCAGGGGTCGTCGCAAGGGGCTGTTaGTGGTCCTCAGGGCAGAGA | + |
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Preference number: 4 (lower is better) Translates to: STGLWSGFQAVKGVMSGVVARGC*WSSGQR Trigger: TCTCTGCCCTGAGGACCATCAACAGCCCCTTGCGAC...GACCCCTGACATCACCCCCTTGACTGCCTGAAACCCAGACCAGAGCCCTGTAGA 60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000046384.9 |
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| CDS-3UTR CCA 90 bp | TCTACAGGGCTCTGGTCTGGGTTTCAGGCAGTCAAGGGGGTGATGTCAGGGGTCCCGGTGCAGCTGCTTTaGGCCCAGGACACATGGAGA | + |
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Preference number: 4 (lower is better) Translates to: STGLWSGFQAVKGVMSGVPVQLL*AQDTWR Trigger: TCTCCATGTGTCCTGGGCCCAAAGCAGCTGCACCGG...GACCCCTGACATCACCCCCTTGACTGCCTGAAACCCAGACCAGAGCCCTGTAGA 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000046384.9 |
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| CDS-3UTR CCA 90 bp | GTCAAGGGGGTGATGTCAGGGGTCCAGGGAGGATTGCTGGCAGGGAGGCAGGAAAGTCCCAGGGATCCCTaGGTCCCCTTTCTCTCCAAA | + |
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Preference number: 4 (lower is better) Translates to: VKGVMSGVQGGLLAGRQESPRDP*VPFLSK Trigger: TTTGGAGAGAAAGGGGACCCAGGGATCCCTGGGACT...TTCCTGCCTCCCTGCCAGCAATCCTCCCTGGACCCCTGACATCACCCCCTTGAC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000046384.9 |
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| CDS-3UTR TCA 90 bp | CAAGGGGGTGATGTCAGGGGTCCAGGGAGGATTGCTGGCAGGGAGGCAGGAAGAAAAGCAGAAAGCCAGTaGAGATGCTGTTGGCACCCT | + |
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Preference number: 4 (lower is better) Translates to: QGGDVRGPGRIAGREAGRKAESQ*RCCWHP Trigger: AGGGTGCCAACAGCATCTTCACTGGCTTTCTGCTTT...TCTTCCTGCCTCCCTGCCAGCAATCCTCCCTGGACCCCTGACATCACCCCCTTG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000046384.9 |
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| CDS-3UTR GCA 90 bp | TACAGGGCTCTGGTCTGGGTTTCAGGCAGTCAAGGGGGTGATGTCAGGGGTCCACCTTTATCCCTGGAGTaGCTGGTTGGCCATCAGAGC | + |
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Preference number: 4 (lower is better) Translates to: YRALVWVSGSQGGDVRGPPLSLE*LVGHQS Trigger: GCTCTGATGGCCAACCAGGCACTCCAGGGATAAAGG...TGGACCCCTGACATCACCCCCTTGACTGCCTGAAACCCAGACCAGAGCCCTGTA 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000046384.9 |
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| CDS-3UTR CCA 90 bp | TGGGTTTCAGGCAGTCAAGGGGGTGATGTCAGGGGTCCAGGGAGGATTGCTGGCGGGAGTTCTTGTCTGTaGCCTGCAGGTGAACAACCT | + |
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Preference number: 4 (lower is better) Translates to: WVSGSQGGDVRGPGRIAGGSSCL*PAGEQP Trigger: AGGTTGTTCACCTGCAGGCCACAGACAAGAACTCCC...GCCAGCAATCCTCCCTGGACCCCTGACATCACCCCCTTGACTGCCTGAAACCCA 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000046384.9 |
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| CDS-3UTR TCA 90 bp | TTCTGTAACATCTACAGGGCTCTGGTCTGGGTTTCAGGCAGTCAAGGGGGTGATCAGGCACCTTGCAGGTaGACTTGCCGTTGCGTGGCT | + |
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Preference number: 4 (lower is better) Translates to: FCNIYRALVWVSGSQGGDQAPCR*TCRCVA Trigger: AGCCACGCAACGGCAAGTTCACCTGCAAGGTGCCTG...ATCACCCCCTTGACTGCCTGAAACCCAGACCAGAGCCCTGTAGATGTTACAGAA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000046384.9 |
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| CDS-3UTR CCA 90 bp | TTCTGTAACATCTACAGGGCTCTGGTCTGGGTTTCAGGCAGTCAAGGGGGTGATCCTGGAGTGCCTGGTTaGCCATCAGAGCCAGGAACC | + |
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Preference number: 4 (lower is better) Translates to: FCNIYRALVWVSGSQGGDPGVPG*PSEPGT Trigger: GGTTCCTGGCTCTGATGGCCAACCAGGCACTCCAGG...ATCACCCCCTTGACTGCCTGAAACCCAGACCAGAGCCCTGTAGATGTTACAGAA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000046384.9 |
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| CDS-3UTR CCA 90 bp | TTCTGTAACATCTACAGGGCTCTGGTCTGGGTTTCAGGCAGTCAAGGGGGTGATAGGGCCAACTTTGCCTaGAGTCCCAGGGATCCCTGG | + |
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Preference number: 4 (lower is better) Translates to: FCNIYRALVWVSGSQGGDRANFA*SPRDPW Trigger: CCAGGGATCCCTGGGACTCCAGGCAAAGTTGGCCCT...ATCACCCCCTTGACTGCCTGAAACCCAGACCAGAGCCCTGTAGATGTTACAGAA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000046384.9 |
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| CDS-3UTR GCA 90 bp | TTCTGTAACATCTACAGGGCTCTGGTCTGGGTTTCAGGCAGTCAAGGGGGTGATGATTCACACACAGGTTaGCCCGGGAGCTGGCATGAT | + |
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Preference number: 4 (lower is better) Translates to: FCNIYRALVWVSGSQGGDDSHTG*PGSWHD Trigger: ATCATGCCAGCTCCCGGGGCAACCTGTGTGTGAATC...ATCACCCCCTTGACTGCCTGAAACCCAGACCAGAGCCCTGTAGATGTTACAGAA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000046384.9 |
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| CDS-3UTR CCA 90 bp | GATTGCTGGCAGGGAGGCAGGAAGATGGTGTTGGATAGGTGTAATTTGACCCCGTGGGCCCAGGACACATaGAGAAAACCTAGAAGCAGC | + |
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Preference number: 4 (lower is better) Translates to: DCWQGGRKMVLDRCNLTPWAQDT*RKPRSS Trigger: GCTGCTTCTAGGTTTTCTCCATGTGTCCTGGGCCCA...CGGGGTCAAATTACACCTATCCAACACCATCTTCCTGCCTCCCTGCCAGCAATC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000046384.9 |
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| CDS CCA 90 bp | AAGGTCTCCAGCCAGTCCAGGGAGCCCTTTCTCCCCCTTTATCCCTaGAGTGCCTGGTTGGCCATCAGAGCCAGGAACCCCAGGGACCCC | + |
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Preference number: 5 (lower is better) Translates to: KVSSQSREPFLPLYP*SAWLAIRARNPRDP Trigger: GGGGTCCCTGGGGTTCCTGGCTCTGATGGCCAACCAGGCACTCCAGGGATAAAGGGGGAGAAAGGGCTCCCTGGACTGGCTGGAGACCTT 63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000046384.9 |
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| CDS-3UTR CAA 90 bp | GGGCTCTGGTCTGGGTTTCAGGCAGTCAAGGGGGTGATGTCAGGGGTCCAGGGAGGTCGCAAGGGGCTGTaGATGGTCCTCAGGGCAGAG | + |
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Preference number: 5 (lower is better) Translates to: GLWSGFQAVKGVMSGVQGGRKGL*MVLRAE Trigger: CTCTGCCCTGAGGACCATCAACAGCCCCTTGCGACC...TCCCTGGACCCCTGACATCACCCCCTTGACTGCCTGAAACCCAGACCAGAGCCC 63% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000046384.9 |
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| CDS CCA 90 bp | GACGGGACCCTTAGGGCCAACTTTGCCTGGAGTCCCAGGGATCCCTaGGTCCCCTTTCTCTCCAAACTCACCAAGGTCTCCAGCCAGTCC | + |
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Preference number: 5 (lower is better) Translates to: DGTLRANFAWSPRDP*VPFLSKLTKVSSQS Trigger: GGACTGGCTGGAGACCTTGGTGAGTTTGGAGAGAAAGGGGACCCAGGGATCCCTGGGACTCCAGGCAAAGTTGGCCCTAAGGGTCCCGTC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046384.9 |
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| CDS CCA 90 bp | TGGAGTACCCTTAGGGCCGACGGGACCCTTAGGGCCAACTTTGCCTaGAGTCCCAGGGATCCCTGGGTCCCCTTTCTCTCCAAACTCACC | + |
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Preference number: 5 (lower is better) Translates to: WSTLRADGTLRANFA*SPRDPWVPFLSKLT Trigger: GGTGAGTTTGGAGAGAAAGGGGACCCAGGGATCCCTGGGACTCCAGGCAAAGTTGGCCCTAAGGGTCCCGTCGGCCCTAAGGGTACTCCA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046384.9 |
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| CDS-3UTR CAA 90 bp | TACAGGGCTCTGGTCTGGGTTTCAGGCAGTCAAGGGGGTGATGTCAGGGGTCCACCCTTAGGGCCAACTTaGCCTGGAGTCCCAGGGATC | + |
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Preference number: 5 (lower is better) Translates to: YRALVWVSGSQGGDVRGPPLGPT*PGVPGI Trigger: GATCCCTGGGACTCCAGGCAAAGTTGGCCCTAAGGG...TGGACCCCTGACATCACCCCCTTGACTGCCTGAAACCCAGACCAGAGCCCTGTA 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000046384.9 |
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| CDS-3UTR CAA 90 bp | TACAGGGCTCTGGTCTGGGTTTCAGGCAGTCAAGGGGGTGATGTCAGGGGTCCACCAGTGAAGATGCTGTaGGCACCCTCAATGCCCAGG | + |
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Preference number: 5 (lower is better) Translates to: YRALVWVSGSQGGDVRGPPVKML*APSMPR Trigger: CCTGGGCATTGAGGGTGCCAACAGCATCTTCACTGG...TGGACCCCTGACATCACCCCCTTGACTGCCTGAAACCCAGACCAGAGCCCTGTA 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000046384.9 |
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| CDS-3UTR CAA 90 bp | TTCTGTAACATCTACAGGGCTCTGGTCTGGGTTTCAGGCAGTCAAGGGGGTGATCCCGGTGCAGCTGCTTaGGGCCCAGGACACATGGAG | + |
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Preference number: 5 (lower is better) Translates to: FCNIYRALVWVSGSQGGDPGAAA*GPGHME Trigger: CTCCATGTGTCCTGGGCCCAAAGCAGCTGCACCGGG...ATCACCCCCTTGACTGCCTGAAACCCAGACCAGAGCCCTGTAGATGTTACAGAA 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000046384.9 |
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| CDS TCA 90 bp | GCACCCTCAATGCCCAGGAGGGAGTTCTTGTCTGTGGCCTGCAGGTaGACAACCTCCTCTTGCTCTAGCTTCAAGACTACCCCACCTGTG | + |
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Preference number: 5 (lower is better) Translates to: APSMPRREFLSVACR*TTSSCSSFKTTPPV Trigger: CACAGGTGGGGTAGTCTTGAAGCTAGAGCAAGAGGAGGTTGTTCACCTGCAGGCCACAGACAAGAACTCCCTCCTGGGCATTGAGGGTGC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046384.9 |
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| CDS CCA 90 bp | AGATGCTGTTGGCACCCTCAATGCCCAGGAGGGAGTTCTTGTCTGTaGCCTGCAGGTGAACAACCTCCTCTTGCTCTAGCTTCAAGACTA | + |
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Preference number: 5 (lower is better) Translates to: RCCWHPQCPGGSSCL*PAGEQPPLALASRL Trigger: TAGTCTTGAAGCTAGAGCAAGAGGAGGTTGTTCACCTGCAGGCCACAGACAAGAACTCCCTCCTGGGCATTGAGGGTGCCAACAGCATCT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046384.9 |
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| CDS CCA 72 bp | AGAATCGCCTTTGGGACCGCGGGGTCCAGAGGGGCCTaGAGTACCCTTAGGGCCGACGGGACCCTTAGGGCC | + |
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Preference number: 6 (lower is better) Translates to: RIAFGTAGSRGA*STLRADGTLRA Trigger: GGCCCTAAGGGTCCCGTCGGCCCTAAGGGTACTCCAGGCCCCTCTGGACCCCGCGGTCCCAAAGGCGATTCT 68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000046384.9 |
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| CDS CCA 72 bp | AGGGAGCCCTTTCTCCCCCTTTATCCCTGGAGTGCCTaGTTGGCCATCAGAGCCAGGAACCCCAGGGACCCC | + |
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Preference number: 6 (lower is better) Translates to: REPFLPLYPWSA*LAIRARNPRDP Trigger: GGGGTCCCTGGGGTTCCTGGCTCTGATGGCCAACCAGGCACTCCAGGGATAAAGGGGGAGAAAGGGCTCCCT 64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000046384.9 |
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| CDS CAA 90 bp | GGGCCTGGAGTACCCTTAGGGCCGACGGGACCCTTAGGGCCAACTTaGCCTGGAGTCCCAGGGATCCCTGGGTCCCCTTTCTCTCCAAAC | + |
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Preference number: 6 (lower is better) Translates to: GPGVPLGPTGPLGPT*PGVPGIPGSPFSPN Trigger: GTTTGGAGAGAAAGGGGACCCAGGGATCCCTGGGACTCCAGGCAAAGTTGGCCCTAAGGGTCCCGTCGGCCCTAAGGGTACTCCAGGCCC 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046384.9 |
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| CDS GCA 72 bp | GTCCAGGGAGCCCTTTCTCCCCCTTTATCCCTGGAGTaGCTGGTTGGCCATCAGAGCCAGGAACCCCAGGGA | + |
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Preference number: 6 (lower is better) Translates to: VQGALSPPLSLE*LVGHQSQEPQG Trigger: TCCCTGGGGTTCCTGGCTCTGATGGCCAACCAGGCACTCCAGGGATAAAGGGGGAGAAAGGGCTCCCTGGAC 62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000046384.9 |
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| CDS CCA 72 bp | GGGGGCCCGGTGCAGCTGCTTTGGGCCCAGGACACATaGAGAAAACCTAGAAGCAGCAGTAACAGGTGTGTC | + |
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Preference number: 6 (lower is better) Translates to: GGPVQLLWAQDT*RKPRSSSNRCV Trigger: GACACACCTGTTACTGCTGCTTCTAGGTTTTCTCCATGTGTCCTGGGCCCAAAGCAGCTGCACCGGGCCCCC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000046384.9 |
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| CDS CCA 72 bp | CTTAGGGCCAACTTTGCCTGGAGTCCCAGGGATCCCTaGGTCCCCTTTCTCTCCAAACTCACCAAGGTCTCC | + |
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Preference number: 6 (lower is better) Translates to: LRANFAWSPRDP*VPFLSKLTKVS Trigger: GGAGACCTTGGTGAGTTTGGAGAGAAAGGGGACCCAGGGATCCCTGGGACTCCAGGCAAAGTTGGCCCTAAG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046384.9 |
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| CDS CCA 72 bp | TGGCACCCTCAATGCCCAGGAGGGAGTTCTTGTCTGTaGCCTGCAGGTGAACAACCTCCTCTTGCTCTAGCT | + |
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Preference number: 6 (lower is better) Translates to: WHPQCPGGSSCL*PAGEQPPLALA Trigger: AGCTAGAGCAAGAGGAGGTTGTTCACCTGCAGGCCACAGACAAGAACTCCCTCCTGGGCATTGAGGGTGCCA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046384.9 |
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| CDS CAA 72 bp | TCGAAGCGAATGACCTGGTTCGGTCGCAAGGGGCTGTaGATGGTCCTCAGGGCAGAGAAGGCGACTTTCTGT | + |
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Preference number: 6 (lower is better) Translates to: SKRMTWFGRKGL*MVLRAEKATFC Trigger: ACAGAAAGTCGCCTTCTCTGCCCTGAGGACCATCAACAGCCCCTTGCGACCGAACCAGGTCATTCGCTTCGA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046384.9 |
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| CDS TCA 72 bp | TCACCTGGAAGGTGTTCTGGGCATAGTCACAGAAGGTaGCTACTTTCTGCATGCTGTCCCGATCGCGGCCAC | + |
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Preference number: 6 (lower is better) Translates to: SPGRCSGHSHRR*LLSACCPDRGH Trigger: GTGGCCGCGATCGGGACAGCATGCAGAAAGTAGTCACCTTCTGTGACTATGCCCAGAACACCTTCCAGGTGA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046384.9 |
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| CDS CCA 72 bp | TTCGCGTTGGTGATCACCTTTTCGAAGCGAATGACCTaGTTCGGTCGCAAGGGGCTGTTGATGGTCCTCAGG | + |
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Preference number: 6 (lower is better) Translates to: FALVITFSKRMT*FGRKGLLMVLR Trigger: CCTGAGGACCATCAACAGCCCCTTGCGACCGAACCAGGTCATTCGCTTCGAAAAGGTGATCACCAACGCGAA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000046384.9 |
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| CDS CAA 90 bp | TACGCATCCATGTCAGGGAAAAGCAGAAAGCCAGTGAAGATGCTGTaGGCACCCTCAATGCCCAGGAGGGAGTTCTTGTCTGTGGCCTGC | + |
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Preference number: 6 (lower is better) Translates to: YASMSGKSRKPVKML*APSMPRREFLSVAC Trigger: GCAGGCCACAGACAAGAACTCCCTCCTGGGCATTGAGGGTGCCAACAGCATCTTCACTGGCTTTCTGCTTTTCCCTGACATGGATGCGTA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046384.9 |
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| CDS TCA 72 bp | ATGCCCAGGAGGGAGTTCTTGTCTGTGGCCTGCAGGTaGACAACCTCCTCTTGCTCTAGCTTCAAGACTACC | + |
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Preference number: 6 (lower is better) Translates to: MPRREFLSVACR*TTSSCSSFKTT Trigger: GGTAGTCTTGAAGCTAGAGCAAGAGGAGGTTGTTCACCTGCAGGCCACAGACAAGAACTCCCTCCTGGGCAT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046384.9 |
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| CDS CCA 72 bp | CCTCCTCTTGCTCTAGCTTCAAGACTACCCCACCTGTaGTCACCTGGAAGGTGTTCTGGGCATAGTCACAGA | + |
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Preference number: 6 (lower is better) Translates to: PPLALASRLPHL*SPGRCSGHSHR Trigger: TCTGTGACTATGCCCAGAACACCTTCCAGGTGACCACAGGTGGGGTAGTCTTGAAGCTAGAGCAAGAGGAGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046384.9 |
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