Pregenerated sensors for C1QA (Mus musculus)
Ensembl gene IDs: ENSMUSG00000036887Ensembl transcript IDs: ENSMUST00000046285.6
Found 43 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR CCA 90 bp | TGGGCAGTGTGCAGAAACATCAGTCCTCAGTGCCCTCCCTCCGAGACAGCCCCTAGGGAGCGCAGGAGATaGCAGGATGCAGGGGCAGAT | + |
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Preference number: 2 (lower is better) Translates to: WAVCRNISPQCPPSETAPRERRR*QDAGAD Trigger: ATCTGCCCCTGCATCCTGCCATCTCCTGCGCTCCCT...AGGGGCTGTCTCGGAGGGAGGGCACTGAGGACTGATGTTTCTGCACACTGCCCA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000046285.6 |
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| 3UTR-3UTR GCA 90 bp | CTTAAAGAAACCACTGGGCAGTGTGCAGAAACATCAGTCCTCAGTGCCCTCCCTCTTCACTTTGCAGAGTaGGGAGGGGAGGGGTGCAGG | + |
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Preference number: 2 (lower is better) Translates to: LKETTGQCAETSVLSALPLHFAE*GGEGCR Trigger: CCTGCACCCCTCCCCTCCGCACTCTGCAAAGTGAAG...AGGGAGGGCACTGAGGACTGATGTTTCTGCACACTGCCCAGTGGTTTCTTTAAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000046285.6 |
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| 3UTR-3UTR GCA 90 bp | AAAGTGCTTAAAGAAACCACTGGGCAGTGTGCAGAAACATCAGTCCTCAGTGCCCCAGCCCCTTCACTTTaGAGAGTGCGGAGGGGAGGG | + |
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Preference number: 2 (lower is better) Translates to: KVLKETTGQCAETSVLSAPAPSL*RVRRGG Trigger: CCCTCCCCTCCGCACTCTGCAAAGTGAAGGGGCTGG...GGCACTGAGGACTGATGTTTCTGCACACTGCCCAGTGGTTTCTTTAAGCACTTT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000046285.6 |
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| 3UTR GCA 72 bp | TCACAGACACAGACGGGGATCGTTTATTCCAGAAAGTaGTTAAAGAAACCACTGGGCAGTGTGCAGAAACAT | + |
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Preference number: 3 (lower is better) Translates to: SQTQTGIVYSRK*LKKPLGSVQKH Trigger: ATGTTTCTGCACACTGCCCAGTGGTTTCTTTAAGCACTTTCTGGAATAAACGATCCCCGTCTGTGTCTGTGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046285.6 |
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| CDS-3UTR CCA 90 bp | TGGGCAGTGTGCAGAAACATCAGTCCTCAGTGCCCTCCCTCCGAGACAGCCCCTAAAGCTGGCCGGGGCTaGTCCCTGATATTGCCTGGA | + |
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Preference number: 4 (lower is better) Translates to: WAVCRNISPQCPPSETAPKAGRG*SLILPG Trigger: TCCAGGCAATATCAGGGACCAGCCCCGGCCAGCTTT...AGGGGCTGTCTCGGAGGGAGGGCACTGAGGACTGATGTTTCTGCACACTGCCCA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000046285.6 |
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| CDS-3UTR GCA 90 bp | CACTGGGCAGTGTGCAGAAACATCAGTCCTCAGTGCCCTCCCTCCGAGACAGCCATAGAAGCCGGGCACTaGACAGATGAAGCGACCCGT | + |
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Preference number: 4 (lower is better) Translates to: HWAVCRNISPQCPPSETAIEAGH*TDEATR Trigger: ACGGGTCGCTTCATCTGTGCAGTGCCCGGCTTCTAT...GGCTGTCTCGGAGGGAGGGCACTGAGGACTGATGTTTCTGCACACTGCCCAGTG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046285.6 |
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| CDS-3UTR TCA 90 bp | CAGACGGGGATCGTTTATTCCAGAAAGTGCTTAAAGAAACCACTGGGCAGTGTGCCCCTCTCTCTCCTTTaGGACCCGGCCTCCCCGGGC | + |
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Preference number: 4 (lower is better) Translates to: QTGIVYSRKCLKKPLGSVPLSLL*DPASPG Trigger: GCCCGGGGAGGCCGGGTCTCAAAGGAGAGAGAGGGG...CACACTGCCCAGTGGTTTCTTTAAGCACTTTCTGGAATAAACGATCCCCGTCTG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000046285.6 |
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| CDS-3UTR GCA 90 bp | ACTGGGCAGTGTGCAGAAACATCAGTCCTCAGTGCCCTCCCTCCGAGACAGCCCGTAAATGCGACCCTTTaGGGGGTCCTTTTCGATCCA | + |
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Preference number: 4 (lower is better) Translates to: TGQCAETSVLSALPPRQPVNATL*GVLFDP Trigger: TGGATCGAAAAGGACCCCGCAAAGGGTCGCATTTAC...GGGCTGTCTCGGAGGGAGGGCACTGAGGACTGATGTTTCTGCACACTGCCCAGT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000046285.6 |
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| CDS-3UTR GCA 90 bp | ACGGGGATCGTTTATTCCAGAAAGTGCTTAAAGAAACCACTGGGCAGTGTGCAGGGATACCAGTCCGGATaGCAGCAGCTCCTGGCTCCC | + |
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Preference number: 4 (lower is better) Translates to: TGIVYSRKCLKKPLGSVQGYQSG*QQLLAP Trigger: GGGAGCCAGGAGCTGCTGGCATCCGGACTGGTATCC...CTGCACACTGCCCAGTGGTTTCTTTAAGCACTTTCTGGAATAAACGATCCCCGT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046285.6 |
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| CDS-3UTR GCA 90 bp | TTCCAGAAAGTGCTTAAAGAAACCACTGGGCAGTGTGCAGAAACATCAGTCCTCTGCTGTCGGCTTCAGTaGCCTGGTAAATGCGACCCT | + |
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Preference number: 4 (lower is better) Translates to: FQKVLKETTGQCAETSVLCCRLQ*PGKCDP Trigger: AGGGTCGCATTTACCAGGGCACTGAAGCCGACAGCA...GAGGACTGATGTTTCTGCACACTGCCCAGTGGTTTCTTTAAGCACTTTCTGGAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046285.6 |
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| CDS-3UTR TCA 90 bp | CTTAAAGAAACCACTGGGCAGTGTGCAGAAACATCAGTCCTCAGTGCCCTCCCTAGATCACTTGGAAGTTaGAGTAATAGAAGCCGGGCA | + |
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Preference number: 4 (lower is better) Translates to: LKETTGQCAETSVLSALPRSLGS*SNRSRA Trigger: TGCCCGGCTTCTATTACTTCAACTTCCAAGTGATCT...AGGGAGGGCACTGAGGACTGATGTTTCTGCACACTGCCCAGTGGTTTCTTTAAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046285.6 |
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| CDS-3UTR GCA 90 bp | GATCGTTTATTCCAGAAAGTGCTTAAAGAAACCACTGGGCAGTGTGCAGAAACACAGTGCCCTGGTAAATaGGACCCTTTGCGGGGTCCT | + |
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Preference number: 4 (lower is better) Translates to: DRLFQKVLKETTGQCAETQCPGK*DPLRGP Trigger: AGGACCCCGCAAAGGGTCGCATTTACCAGGGCACTG...TGTTTCTGCACACTGCCCAGTGGTTTCTTTAAGCACTTTCTGGAATAAACGATC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046285.6 |
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| CDS-3UTR CCA 90 bp | CAGACGGGGATCGTTTATTCCAGAAAGTGCTTAAAGAAACCACTGGGCAGTGTGTGGTATGGACTCTCCTaGTTGGTGAGGACCTTGTCA | + |
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Preference number: 4 (lower is better) Translates to: QTGIVYSRKCLKKPLGSVWYGLS*LVRTLS Trigger: TGACAAGGTCCTCACCAACCAGGAGAGTCCATACCA...CACACTGCCCAGTGGTTTCTTTAAGCACTTTCTGGAATAAACGATCCCCGTCTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046285.6 |
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| CDS-3UTR TCA 90 bp | GATCGTTTATTCCAGAAAGTGCTTAAAGAAACCACTGGGCAGTGTGCAGAAACACCCCCTGCTAACACCTaGAAGAGCCCCTTGTTGTTG | + |
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Preference number: 4 (lower is better) Translates to: DRLFQKVLKETTGQCAETPPANT*KSPLLL Trigger: CAACAACAAGGGGCTCTTTCAGGTGTTAGCAGGGGG...TGTTTCTGCACACTGCCCAGTGGTTTCTTTAAGCACTTTCTGGAATAAACGATC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000046285.6 |
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| CDS CCA 90 bp | TCTCTCTCCTTTGAGACCCGGCCTCCCCGGGCGGCCAGGATTTCCTaGAGCCCCATCCTTCCCGTTGGGTGCTCGGCAGACATCTTCAGC | + |
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Preference number: 5 (lower is better) Translates to: SLSFETRPPRAARIS*SPILPVGCSADIFS Trigger: GCTGAAGATGTCTGCCGAGCACCCAACGGGAAGGATGGGGCTCCAGGAAATCCTGGCCGCCCGGGGAGGCCGGGTCTCAAAGGAGAGAGA 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000046285.6 |
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| CDS-3UTR CAA 90 bp | ACTGGGCAGTGTGCAGAAACATCAGTCCTCAGTGCCCTCCCTCCGAGACAGCCCGCCCCATCCTTCCCGTaGGGTGCTCGGCAGACATCT | + |
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Preference number: 5 (lower is better) Translates to: TGQCAETSVLSALPPRQPAPSFP*GARQTS Trigger: AGATGTCTGCCGAGCACCCAACGGGAAGGATGGGGC...GGGCTGTCTCGGAGGGAGGGCACTGAGGACTGATGTTTCTGCACACTGCCCAGT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046285.6 |
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| CDS-3UTR CAA 90 bp | GGGCAGTGTGCAGAAACATCAGTCCTCAGTGCCCTCCCTCCGAGACAGCCCCTCTATGGACTCTCCTGGTaGGTGAGGACCTTGTCAAAG | + |
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Preference number: 5 (lower is better) Translates to: GQCAETSVLSALPPRQPLYGLSW*VRTLSK Trigger: CTTTGACAAGGTCCTCACCAACCAGGAGAGTCCATA...GAGGGGCTGTCTCGGAGGGAGGGCACTGAGGACTGATGTTTCTGCACACTGCCC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046285.6 |
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| CDS TCA 90 bp | AAAGATAACCACGTTGCCAAGCGTCATTGGGTTCTGCCGAATGGCTaGGAAAGCTGGCCGGGGCTGGTCCCTGATATTGCCTGGATTGCC | + |
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Preference number: 5 (lower is better) Translates to: KDNHVAKRHWVLPNG*ESWPGLVPDIAWIA Trigger: GGCAATCCAGGCAATATCAGGGACCAGCCCCGGCCAGCTTTCTCAGCCATTCGGCAGAACCCAATGACGCTTGGCAACGTGGTTATCTTT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046285.6 |
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| CDS GCA 90 bp | AGGACCTTGTCAAAGATAACCACGTTGCCAAGCGTCATTGGGTTCTaGCGAATGGCTGAGAAAGCTGGCCGGGGCTGGTCCCTGATATTG | + |
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Preference number: 5 (lower is better) Translates to: RTLSKITTLPSVIGF*RMAEKAGRGWSLIL Trigger: CAATATCAGGGACCAGCCCCGGCCAGCTTTCTCAGCCATTCGGCAGAACCCAATGACGCTTGGCAACGTGGTTATCTTTGACAAGGTCCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046285.6 |
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| CDS CCA 90 bp | GAAGCCGGGCACTGCACAGATGAAGCGACCCGTGTGGTTCTGGTATaGACTCTCCTGGTTGGTGAGGACCTTGTCAAAGATAACCACGTT | + |
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Preference number: 5 (lower is better) Translates to: EAGHCTDEATRVVLV*TLLVGEDLVKDNHV Trigger: AACGTGGTTATCTTTGACAAGGTCCTCACCAACCAGGAGAGTCCATACCAGAACCACACGGGTCGCTTCATCTGTGCAGTGCCCGGCTTC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046285.6 |
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| CDS-3UTR CAA 90 bp | CGTTTATTCCAGAAAGTGCTTAAAGAAACCACTGGGCAGTGTGCAGAAACATCACACGCCCTTCAGTCCTaGGGGGCCGCTGTCCCCCAG | + |
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Preference number: 5 (lower is better) Translates to: RLFQKVLKETTGQCAETSHALQS*GAAVPQ Trigger: CTGGGGGACAGCGGCCCCCAAGGACTGAAGGGCGTG...TGATGTTTCTGCACACTGCCCAGTGGTTTCTTTAAGCACTTTCTGGAATAAACG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000046285.6 |
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| CDS CCA 90 bp | ACTGCACAGATGAAGCGACCCGTGTGGTTCTGGTATGGACTCTCCTaGTTGGTGAGGACCTTGTCAAAGATAACCACGTTGCCAAGCGTC | + |
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Preference number: 5 (lower is better) Translates to: TAQMKRPVWFWYGLS*LVRTLSKITTLPSV Trigger: GACGCTTGGCAACGTGGTTATCTTTGACAAGGTCCTCACCAACCAGGAGAGTCCATACCAGAACCACACGGGTCGCTTCATCTGTGCAGT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046285.6 |
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| CDS CCA 90 bp | AGCCCCTTGTTGTTGGTGTTAGAGAAACTCAGGGAATCCCTGGGCTaGCCCCCGGAGGAAGACTTGATAAACAGACAAAGGTCCCACTTG | + |
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Preference number: 5 (lower is better) Translates to: SPLLLVLEKLRESLG*PPEEDLINRQRSHL Trigger: CAAGTGGGACCTTTGTCTGTTTATCAAGTCTTCCTCCGGGGGCCAGCCCAGGGATTCCCTGAGTTTCTCTAACACCAACAACAAGGGGCT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000046285.6 |
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| CDS-3UTR CAA 90 bp | CAGACGGGGATCGTTTATTCCAGAAAGTGCTTAAAGAAACCACTGGGCAGTGTGAGACAAAGGTCCCACTaGGAGATCACTTGGAAGTTG | + |
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Preference number: 5 (lower is better) Translates to: QTGIVYSRKCLKKPLGSVRQRSH*EITWKL Trigger: CAACTTCCAAGTGATCTCCAAGTGGGACCTTTGTCT...CACACTGCCCAGTGGTTTCTTTAAGCACTTTCTGGAATAAACGATCCCCGTCTG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046285.6 |
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| CDS-3UTR CAA 90 bp | TTATTCCAGAAAGTGCTTAAAGAAACCACTGGGCAGTGTGCAGAAACATCAGTCCCCCCGGAGGAAGACTaGATAAACAGACAAAGGTCC | + |
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Preference number: 5 (lower is better) Translates to: LFQKVLKETTGQCAETSVPPEED*INRQRS Trigger: GGACCTTTGTCTGTTTATCAAGTCTTCCTCCGGGGG...GACTGATGTTTCTGCACACTGCCCAGTGGTTTCTTTAAGCACTTTCTGGAATAA 47% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt. Matches the following 1 transcripts: ENSMUST00000046285.6 |
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| CDS-3UTR CAA 90 bp | CGTTTATTCCAGAAAGTGCTTAAAGAAACCACTGGGCAGTGTGCAGAAACATCACTGATATTGCCTGGATaGCCTTTCACGCCCTTCAGT | + |
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Preference number: 5 (lower is better) Translates to: RLFQKVLKETTGQCAETSLILPG*PFTPFS Trigger: ACTGAAGGGCGTGAAAGGCAATCCAGGCAATATCAG...TGATGTTTCTGCACACTGCCCAGTGGTTTCTTTAAGCACTTTCTGGAATAAACG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046285.6 |
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| CDS-3UTR CAA 90 bp | GATCGTTTATTCCAGAAAGTGCTTAAAGAAACCACTGGGCAGTGTGCAGAAACAAAGAGCCCCTTGTTGTaGGTGTTAGAGAAACTCAGG | + |
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Preference number: 5 (lower is better) Translates to: DRLFQKVLKETTGQCAETKSPLL*VLEKLR Trigger: CCTGAGTTTCTCTAACACCAACAACAAGGGGCTCTT...TGTTTCTGCACACTGCCCAGTGGTTTCTTTAAGCACTTTCTGGAATAAACGATC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046285.6 |
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| CDS-3UTR CAA 90 bp | TTATTCCAGAAAGTGCTTAAAGAAACCACTGGGCAGTGTGCAGAAACATCAGTCCCACTTGGAGATCACTaGGAAGTTGAAGTAATAGAA | + |
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Preference number: 5 (lower is better) Translates to: LFQKVLKETTGQCAETSVPLGDH*EVEVIE Trigger: TTCTATTACTTCAACTTCCAAGTGATCTCCAAGTGG...GACTGATGTTTCTGCACACTGCCCAGTGGTTTCTTTAAGCACTTTCTGGAATAA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046285.6 |
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| CDS CCA 72 bp | TTTGAGACCCGGCCTCCCCGGGCGGCCAGGATTTCCTaGAGCCCCATCCTTCCCGTTGGGTGCTCGGCAGAC | + |
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Preference number: 6 (lower is better) Translates to: FETRPPRAARIS*SPILPVGCSAD Trigger: GTCTGCCGAGCACCCAACGGGAAGGATGGGGCTCCAGGAAATCCTGGCCGCCCGGGGAGGCCGGGTCTCAAA 68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000046285.6 |
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| CDS CCA 72 bp | AAAACCTCGGATACCAGTCCGGATGCCAGCAGCTCCTaGCTCCCCTCTCTCTCCTTTGAGACCCGGCCTCCC | + |
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Preference number: 6 (lower is better) Translates to: KTSDTSPDASSS*LPSLSFETRPP Trigger: GGGAGGCCGGGTCTCAAAGGAGAGAGAGGGGAGCCAGGAGCTGCTGGCATCCGGACTGGTATCCGAGGTTTT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000046285.6 |
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| CDS CAA 72 bp | AAAGCTGGCCGGGGCTGGTCCCTGATATTGCCTGGATaGCCTTTCACGCCCTTCAGTCCTTGGGGGCCGCTG | + |
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Preference number: 6 (lower is better) Translates to: KAGRGWSLILPG*PFTPFSPWGPL Trigger: CAGCGGCCCCCAAGGACTGAAGGGCGTGAAAGGCAATCCAGGCAATATCAGGGACCAGCCCCGGCCAGCTTT 62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000046285.6 |
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| CDS CCA 72 bp | GGGTTCTGCCGAATGGCTGAGAAAGCTGGCCGGGGCTaGTCCCTGATATTGCCTGGATTGCCTTTCACGCCC | + |
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Preference number: 6 (lower is better) Translates to: GFCRMAEKAGRG*SLILPGLPFTP Trigger: GGGCGTGAAAGGCAATCCAGGCAATATCAGGGACCAGCCCCGGCCAGCTTTCTCAGCCATTCGGCAGAACCC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046285.6 |
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| CDS TCA 72 bp | GCCGAATGGCTGAGAAAGCTGGCCGGGGCTGGTCCCTaGTATTGCCTGGATTGCCTTTCACGCCCTTCAGTC | + |
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Preference number: 6 (lower is better) Translates to: AEWLRKLAGAGP*YCLDCLSRPSV Trigger: GACTGAAGGGCGTGAAAGGCAATCCAGGCAATATCAGGGACCAGCCCCGGCCAGCTTTCTCAGCCATTCGGC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046285.6 |
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| CDS CCA 72 bp | CCGGGCACTGCACAGATGAAGCGACCCGTGTGGTTCTaGTATGGACTCTCCTGGTTGGTGAGGACCTTGTCA | + |
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Preference number: 6 (lower is better) Translates to: PGTAQMKRPVWF*YGLSWLVRTLS Trigger: TGACAAGGTCCTCACCAACCAGGAGAGTCCATACCAGAACCACACGGGTCGCTTCATCTGTGCAGTGCCCGG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046285.6 |
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| CDS CAA 72 bp | ATGGCTGAGAAAGCTGGCCGGGGCTGGTCCCTGATATaGCCTGGATTGCCTTTCACGCCCTTCAGTCCTTGG | + |
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Preference number: 6 (lower is better) Translates to: MAEKAGRGWSLI*PGLPFTPFSPW Trigger: CCAAGGACTGAAGGGCGTGAAAGGCAATCCAGGCAATATCAGGGACCAGCCCCGGCCAGCTTTCTCAGCCAT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046285.6 |
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| CDS GCA 72 bp | TCAAAGATAACCACGTTGCCAAGCGTCATTGGGTTCTaGCGAATGGCTGAGAAAGCTGGCCGGGGCTGGTCC | + |
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Preference number: 6 (lower is better) Translates to: SKITTLPSVIGF*RMAEKAGRGWS Trigger: GGACCAGCCCCGGCCAGCTTTCTCAGCCATTCGGCAGAACCCAATGACGCTTGGCAACGTGGTTATCTTTGA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046285.6 |
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| CDS CAA 90 bp | CGACCCGTGTGGTTCTGGTATGGACTCTCCTGGTTGGTGAGGACCTaGTCAAAGATAACCACGTTGCCAAGCGTCATTGGGTTCTGCCGA | + |
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Preference number: 6 (lower is better) Translates to: RPVWFWYGLSWLVRT*SKITTLPSVIGFCR Trigger: TCGGCAGAACCCAATGACGCTTGGCAACGTGGTTATCTTTGACAAGGTCCTCACCAACCAGGAGAGTCCATACCAGAACCACACGGGTCG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046285.6 |
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| CDS CAA 72 bp | TCCTGGTTGGTGAGGACCTTGTCAAAGATAACCACGTaGCCAAGCGTCATTGGGTTCTGCCGAATGGCTGAG | + |
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Preference number: 6 (lower is better) Translates to: SWLVRTLSKITT*PSVIGFCRMAE Trigger: CTCAGCCATTCGGCAGAACCCAATGACGCTTGGCAACGTGGTTATCTTTGACAAGGTCCTCACCAACCAGGA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046285.6 |
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| CDS CAA 72 bp | AAGCGACCCGTGTGGTTCTGGTATGGACTCTCCTGGTaGGTGAGGACCTTGTCAAAGATAACCACGTTGCCA | + |
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Preference number: 6 (lower is better) Translates to: KRPVWFWYGLSW*VRTLSKITTLP Trigger: TGGCAACGTGGTTATCTTTGACAAGGTCCTCACCAACCAGGAGAGTCCATACCAGAACCACACGGGTCGCTT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046285.6 |
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| CDS CAA 90 bp | TATGGACTCTCCTGGTTGGTGAGGACCTTGTCAAAGATAACCACGTaGCCAAGCGTCATTGGGTTCTGCCGAATGGCTGAGAAAGCTGGC | + |
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Preference number: 6 (lower is better) Translates to: YGLSWLVRTLSKITT*PSVIGFCRMAEKAG Trigger: GCCAGCTTTCTCAGCCATTCGGCAGAACCCAATGACGCTTGGCAACGTGGTTATCTTTGACAAGGTCCTCACCAACCAGGAGAGTCCATA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046285.6 |
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| CDS CAA 90 bp | GCACAGATGAAGCGACCCGTGTGGTTCTGGTATGGACTCTCCTGGTaGGTGAGGACCTTGTCAAAGATAACCACGTTGCCAAGCGTCATT | + |
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Preference number: 6 (lower is better) Translates to: AQMKRPVWFWYGLSW*VRTLSKITTLPSVI Trigger: AATGACGCTTGGCAACGTGGTTATCTTTGACAAGGTCCTCACCAACCAGGAGAGTCCATACCAGAACCACACGGGTCGCTTCATCTGTGC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046285.6 |
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| CDS CCA 72 bp | ATGAAGCGACCCGTGTGGTTCTGGTATGGACTCTCCTaGTTGGTGAGGACCTTGTCAAAGATAACCACGTTG | + |
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Preference number: 6 (lower is better) Translates to: MKRPVWFWYGLS*LVRTLSKITTL Trigger: CAACGTGGTTATCTTTGACAAGGTCCTCACCAACCAGGAGAGTCCATACCAGAACCACACGGGTCGCTTCAT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046285.6 |
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| CDS CAA 72 bp | TGGTTCTGGTATGGACTCTCCTGGTTGGTGAGGACCTaGTCAAAGATAACCACGTTGCCAAGCGTCATTGGG | + |
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Preference number: 6 (lower is better) Translates to: WFWYGLSWLVRT*SKITTLPSVIG Trigger: CCCAATGACGCTTGGCAACGTGGTTATCTTTGACAAGGTCCTCACCAACCAGGAGAGTCCATACCAGAACCA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046285.6 |
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