Pregenerated sensors for C1GALT1C1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000048970Ensembl transcript IDs: ENSMUST00000058265.8
Found 24 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS-3UTR GCA 90 bp | TATAAGGGAAAAACAGCATTCCATTTGACATTGTACAAGCAGACTTCAATGGGTCCAAGTCTCCTTCACTaGAGCCCAAAGACTCACATC | + |
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Preference number: 4 (lower is better) Translates to: YKGKTAFHLTLYKQTSMGPSLLH*SPKTHI Trigger: GATGTGAGTCTTTGGGCTGCAGTGAAGGAGACTTGG...ACCCATTGAAGTCTGCTTGTACAATGTCAAATGGAATGCTGTTTTTCCCTTATA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000058265.8 |
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| CDS-3UTR GCA 90 bp | AAGGGAAAAACAGCATTCCATTTGACATTGTACAAGCAGACTTCAATGGGTAAAGAAAACATGTCCAAATaGCCTAAGCCGGTACACCCC | + |
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Preference number: 4 (lower is better) Translates to: KGKTAFHLTLYKQTSMGKENMSK*PKPVHP Trigger: GGGGTGTACCGGCTTAGGGCATTTGGACATGTTTTC...TTTACCCATTGAAGTCTGCTTGTACAATGTCAAATGGAATGCTGTTTTTCCCTT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000058265.8 |
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| CDS-3UTR GCA 90 bp | TATAAGGGAAAAACAGCATTCCATTTGACATTGTACAAGCAGACTTCAATGGGTTCAAGGCACAGAAGATaGTTCCAAGCATCACACCCT | + |
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Preference number: 4 (lower is better) Translates to: YKGKTAFHLTLYKQTSMGSRHRR*FQASHP Trigger: AGGGTGTGATGCTTGGAAGCATCTTCTGTGCCTTGA...ACCCATTGAAGTCTGCTTGTACAATGTCAAATGGAATGCTGTTTTTCCCTTATA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000058265.8 |
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| CDS-3UTR TCA 90 bp | AAGGGAAAAACAGCATTCCATTTGACATTGTACAAGCAGACTTCAATGGGTAAAATCATCACGTGCATCTaGTTAGGAGTCAGTCCATTG | + |
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Preference number: 4 (lower is better) Translates to: KGKTAFHLTLYKQTSMGKIITCI*LGVSPL Trigger: CAATGGACTGACTCCTAATCAGATGCACGTGATGAT...TTTACCCATTGAAGTCTGCTTGTACAATGTCAAATGGAATGCTGTTTTTCCCTT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000058265.8 |
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| CDS-3UTR CCA 90 bp | TATAAGGGAAAAACAGCATTCCATTTGACATTGTACAAGCAGACTTCAATGGGTTTCTACTACCTGGTTTaGTTGGTTAGTCATTGCCTC | + |
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Preference number: 4 (lower is better) Translates to: YKGKTAFHLTLYKQTSMGFYYLV*LVSHCL Trigger: GAGGCAATGACTAACCAACCAAACCAGGTAGTAGAA...ACCCATTGAAGTCTGCTTGTACAATGTCAAATGGAATGCTGTTTTTCCCTTATA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000058265.8 |
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| CDS-3UTR CCA 90 bp | TATAAGGGAAAAACAGCATTCCATTTGACATTGTACAAGCAGACTTCAATGGGTCAGCCTTCTACTACCTaGTTTGGTTGGTTAGTCATT | + |
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Preference number: 4 (lower is better) Translates to: YKGKTAFHLTLYKQTSMGQPSTT*FGWLVI Trigger: AATGACTAACCAACCAAACCAGGTAGTAGAAGGCTG...ACCCATTGAAGTCTGCTTGTACAATGTCAAATGGAATGCTGTTTTTCCCTTATA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000058265.8 |
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| CDS-3UTR GCA 90 bp | AAGGGAAAAACAGCATTCCATTTGACATTGTACAAGCAGACTTCAATGGGTAAAATCTTCGGCATTTTCTaGAAATACTCCGGCGTATTT | + |
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Preference number: 4 (lower is better) Translates to: KGKTAFHLTLYKQTSMGKIFGIF*KYSGVF Trigger: AAATACGCCGGAGTATTTGCAGAAAATGCCGAAGAT...TTTACCCATTGAAGTCTGCTTGTACAATGTCAAATGGAATGCTGTTTTTCCCTT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000058265.8 |
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| CDS-3UTR GCA 90 bp | TATAAGGGAAAAACAGCATTCCATTTGACATTGTACAAGCAGACTTCAATGGGTTGGTTGGTTAGTCATTaGCTCTTTAATGAAAAGGCC | + |
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Preference number: 4 (lower is better) Translates to: YKGKTAFHLTLYKQTSMGWLVSH*LFNEKA Trigger: GGCCTTTTCATTAAAGAGGCAATGACTAACCAACCA...ACCCATTGAAGTCTGCTTGTACAATGTCAAATGGAATGCTGTTTTTCCCTTATA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000058265.8 |
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| CDS-3UTR CCA 90 bp | TATAAGGGAAAAACAGCATTCCATTTGACATTGTACAAGCAGACTTCAATGGGTTTTCCAATCCTAATGTaGCCTAGCATAGTGATCAAG | + |
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Preference number: 4 (lower is better) Translates to: YKGKTAFHLTLYKQTSMGFPILM*PSIVIK Trigger: CTTGATCACTATGCTAGGCCACATTAGGATTGGAAA...ACCCATTGAAGTCTGCTTGTACAATGTCAAATGGAATGCTGTTTTTCCCTTATA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000058265.8 |
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| CDS-3UTR CCA 90 bp | TATAAGGGAAAAACAGCATTCCATTTGACATTGTACAAGCAGACTTCAATGGGTACTACCTGGTTTGGTTaGTTAGTCATTGCCTCTTTA | + |
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Preference number: 4 (lower is better) Translates to: YKGKTAFHLTLYKQTSMGTTWFG*LVIASL Trigger: TAAAGAGGCAATGACTAACCAACCAAACCAGGTAGT...ACCCATTGAAGTCTGCTTGTACAATGTCAAATGGAATGCTGTTTTTCCCTTATA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000058265.8 |
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| CDS TCA 90 bp | ACAGTATACCCGGAAACTCTTACTGAGCTCCATGCGTTCAGCCTCTaGAATTTTCGAGATATCGTCTTTGTTAGGGGCTTGCAGATGGTG | + |
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Preference number: 5 (lower is better) Translates to: TVYPETLTELHAFSL*NFRDIVFVRGLQMV Trigger: CACCATCTGCAAGCCCCTAACAAAGACGATATCTCGAAAATTTCAGAGGCTGAACGCATGGAGCTCAGTAAGAGTTTCCGGGTATACTGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000058265.8 |
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| CDS TCA 90 bp | TCTGAAATTTTCGAGATATCGTCTTTGTTAGGGGCTTGCAGATGGTaGTGCTCATGGTGGTGCATTCTGTTTCCAATCCTAATGTGGCCT | + |
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Preference number: 5 (lower is better) Translates to: SEIFEISSLLGACRW*CSWWCILFPILMWP Trigger: AGGCCACATTAGGATTGGAAACAGAATGCACCACCATGAGCATCACCATCTGCAAGCCCCTAACAAAGACGATATCTCGAAAATTTCAGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000058265.8 |
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| CDS-3UTR CAA 90 bp | AAGGGAAAAACAGCATTCCATTTGACATTGTACAAGCAGACTTCAATGGGTAAAGTCTTTGTTAGGGGCTaGCAGATGGTGATGCTCATG | + |
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Preference number: 5 (lower is better) Translates to: KGKTAFHLTLYKQTSMGKVFVRG*QMVMLM Trigger: CATGAGCATCACCATCTGCAAGCCCCTAACAAAGAC...TTTACCCATTGAAGTCTGCTTGTACAATGTCAAATGGAATGCTGTTTTTCCCTT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000058265.8 |
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| CDS TCA 90 bp | CTTTGGGTTTTACAAGAACTATACAGTATACCCGGAAACTCTTACTaGGCTCCATGCGTTCAGCCTCTGAAATTTTCGAGATATCGTCTT | + |
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Preference number: 5 (lower is better) Translates to: LWVLQELYSIPGNSY*APCVQPLKFSRYRL Trigger: AAGACGATATCTCGAAAATTTCAGAGGCTGAACGCATGGAGCTCAGTAAGAGTTTCCGGGTATACTGTATAGTTCTTGTAAAACCCAAAG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000058265.8 |
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| CDS-3UTR CAA 90 bp | TATAAGGGAAAAACAGCATTCCATTTGACATTGTACAAGCAGACTTCAATGGGTTACTACCTGGTTTGGTaGGTTAGTCATTGCCTCTTT | + |
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Preference number: 5 (lower is better) Translates to: YKGKTAFHLTLYKQTSMGYYLVW*VSHCLF Trigger: AAAGAGGCAATGACTAACCAACCAAACCAGGTAGTA...ACCCATTGAAGTCTGCTTGTACAATGTCAAATGGAATGCTGTTTTTCCCTTATA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000058265.8 |
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| CDS-3UTR CAA 90 bp | TATAAGGGAAAAACAGCATTCCATTTGACATTGTACAAGCAGACTTCAATGGGTGAAGAACCAGTTGTATaGGTCCCTGTATTGATCATA | + |
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Preference number: 5 (lower is better) Translates to: YKGKTAFHLTLYKQTSMGEEPVV*VPVLII Trigger: TATGATCAATACAGGGACCAATACAACTGGTTCTTC...ACCCATTGAAGTCTGCTTGTACAATGTCAAATGGAATGCTGTTTTTCCCTTATA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000058265.8 |
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| CDS-3UTR CAA 90 bp | AAGGGAAAAACAGCATTCCATTTGACATTGTACAAGCAGACTTCAATGGGTAAATTAGGAGTCAGTCCATaGAAAGTAACAGCCATATCA | + |
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Preference number: 5 (lower is better) Translates to: KGKTAFHLTLYKQTSMGKLGVSP*KVTAIS Trigger: TGATATGGCTGTTACTTTCAATGGACTGACTCCTAA...TTTACCCATTGAAGTCTGCTTGTACAATGTCAAATGGAATGCTGTTTTTCCCTT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000058265.8 |
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| CDS-3UTR CAA 90 bp | AAGGGAAAAACAGCATTCCATTTGACATTGTACAAGCAGACTTCAATGGGTAAACATTCTCAGAACCATTaGGAGGTAAGAAAACCAATG | + |
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Preference number: 5 (lower is better) Translates to: KGKTAFHLTLYKQTSMGKHSQNH*EVRKPM Trigger: CATTGGTTTTCTTACCTCCAAATGGTTCTGAGAATG...TTTACCCATTGAAGTCTGCTTGTACAATGTCAAATGGAATGCTGTTTTTCCCTT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000058265.8 |
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| CDS TCA 72 bp | CCGGAAACTCTTACTGAGCTCCATGCGTTCAGCCTCTaGAATTTTCGAGATATCGTCTTTGTTAGGGGCTTG | + |
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Preference number: 6 (lower is better) Translates to: PETLTELHAFSL*NFRDIVFVRGL Trigger: CAAGCCCCTAACAAAGACGATATCTCGAAAATTTCAGAGGCTGAACGCATGGAGCTCAGTAAGAGTTTCCGG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000058265.8 |
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| CDS CCA 72 bp | TGCTCATGGTGGTGCATTCTGTTTCCAATCCTAATGTaGCCTAGCATAGTGATCAAGGCACAGAAGATGCTT | + |
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Preference number: 6 (lower is better) Translates to: CSWWCILFPILM*PSIVIKAQKML Trigger: AAGCATCTTCTGTGCCTTGATCACTATGCTAGGCCACATTAGGATTGGAAACAGAATGCACCACCATGAGCA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058265.8 |
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| CDS CCA 72 bp | AAGTCTCCTTCACTGCAGCCCAAAGACTCACATCTTTaGGTTTTACAAGAACTATACAGTATACCCGGAAAC | + |
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Preference number: 6 (lower is better) Translates to: KSPSLQPKDSHL*VLQELYSIPGN Trigger: GTTTCCGGGTATACTGTATAGTTCTTGTAAAACCCAAAGATGTGAGTCTTTGGGCTGCAGTGAAGGAGACTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058265.8 |
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| CDS TCA 72 bp | TTACAAGAACTATACAGTATACCCGGAAACTCTTACTaGGCTCCATGCGTTCAGCCTCTGAAATTTTCGAGA | + |
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Preference number: 6 (lower is better) Translates to: LQELYSIPGNSY*APCVQPLKFSR Trigger: TCTCGAAAATTTCAGAGGCTGAACGCATGGAGCTCAGTAAGAGTTTCCGGGTATACTGTATAGTTCTTGTAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058265.8 |
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| CDS GCA 72 bp | ACAGCCTTCTACTACCTGGTTTGGTTGGTTAGTCATTaGCTCTTTAATGAAAAGGCCAACGGATTTGGTATT | + |
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Preference number: 6 (lower is better) Translates to: TAFYYLVWLVSH*LFNEKANGFGI Trigger: AATACCAAATCCGTTGGCCTTTTCATTAAAGAGGCAATGACTAACCAACCAAACCAGGTAGTAGAAGGCTGT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058265.8 |
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| CDS CAA 72 bp | TTAGTCATTGCCTCTTTAATGAAAAGGCCAACGGATTaGGTATTAAACACATCTTTTCCATCGGCATCTTCG | + |
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Preference number: 6 (lower is better) Translates to: LVIASLMKRPTD*VLNTSFPSASS Trigger: CGAAGATGCCGATGGAAAAGATGTGTTTAATACCAAATCCGTTGGCCTTTTCATTAAAGAGGCAATGACTAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000058265.8 |
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