Pregenerated sensors for C1GALT1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000042460Ensembl transcript IDs: ENSMUST00000040159.6
Found 67 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | CCTCAAGAAACAACTCAGAAAACAACCAGTCAGCAAACACTGCCGTaGTCAATCCCAAGCACCTCCCTCACGACAAAGAATGAAGTAGTC | + |
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Preference number: 1 (lower is better) Translates to: PQETTQKTTSQQTLP*SIPSTSLTTKNEVV Trigger: GACTACTTCATTCTTTGTCGTGAGGGAGGTGCTTGGGATTGAGCACGGCAGTGTTTGCTGACTGGTTGTTTTCTGAGTTGTTTCTTGAGG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040159.6 |
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| 3UTR GCA 90 bp | GGTTGCTTCTGCAGTCTGAATGGGGTTCTGTTCTGTTGGAATTACTaGTGGCAAGGTTATCCTCAAATAAGAAGTCAGCAGGAAATATGC | + |
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Preference number: 1 (lower is better) Translates to: GCFCSLNGVLFCWNY*WQGYPQIRSQQEIC Trigger: GCATATTTCCTGCTGACTTCTTATTTGAGGATAACCTTGCCAGCAGTAATTCCAACAGAACAGAACCCCATTCAGACTGCAGAAGCAACC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040159.6 |
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| 3UTR CCA 90 bp | AGTGATACAGGTTGCTTCTGCAGTCTGAATGGGGTTCTGTTCTGTTaGAATTACTGCTGGCAAGGTTATCCTCAAATAAGAAGTCAGCAG | + |
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Preference number: 1 (lower is better) Translates to: SDTGCFCSLNGVLFC*NYCWQGYPQIRSQQ Trigger: CTGCTGACTTCTTATTTGAGGATAACCTTGCCAGCAGTAATTCCAACAGAACAGAACCCCATTCAGACTGCAGAAGCAACCTGTATCACT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040159.6 |
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| 3UTR CCA 90 bp | TGCTTCTGCAGTCTGAATGGGGTTCTGTTCTGTTGGAATTACTGCTaGCAAGGTTATCCTCAAATAAGAAGTCAGCAGGAAATATGCTGT | + |
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Preference number: 1 (lower is better) Translates to: CFCSLNGVLFCWNYC*QGYPQIRSQQEICC Trigger: ACAGCATATTTCCTGCTGACTTCTTATTTGAGGATAACCTTGCCAGCAGTAATTCCAACAGAACAGAACCCCATTCAGACTGCAGAAGCA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040159.6 |
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| 3UTR TCA 90 bp | TGTTTCAGAGTCTTTGAAAAATGCCTCTCTCCTGGGCAGAAATCCTaGGTGTGTTCCAAAGACGATTTGCACCAAAATCATGTAGGTAAA | + |
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Preference number: 1 (lower is better) Translates to: CFRVFEKCLSPGQKS*VCSKDDLHQNHVGK Trigger: TTTACCTACATGATTTTGGTGCAAATCGTCTTTGGAACACACTCAGGATTTCTGCCCAGGAGAGAGGCATTTTTCAAAGACTCTGAAACA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000040159.6 |
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| 3UTR GCA 90 bp | GTACCCTTTACTGGATCGTGCTTTATATTAATTCTGGCCAAAAGCTaGATTCAAAAATACTTGCCAGTGTTACCTGCCACATCAGACATA | + |
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Preference number: 1 (lower is better) Translates to: VPFTGSCFILILAKS*IQKYLPVLPATSDI Trigger: TATGTCTGATGTGGCAGGTAACACTGGCAAGTATTTTTGAATGCAGCTTTTGGCCAGAATTAATATAAAGCACGATCCAGTAAAGGGTAC 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000040159.6 |
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| 3UTR CCA 90 bp | TTCTTTCTTTCTTTAAGGCAGATCTGTTCAGCATTGTGTTCTAACTaGTGTGGTGCAGAAGGTGATTATAAACTAACCACTCCAACTGTA | + |
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Preference number: 1 (lower is better) Translates to: FFLSLRQICSALCSN*CGAEGDYKLTTPTV Trigger: TACAGTTGGAGTGGTTAGTTTATAATCACCTTCTGCACCACACCAGTTAGAACACAATGCTGAACAGATCTGCCTTAAAGAAAGAAAGAA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040159.6 |
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| 3UTR-3UTR TCA 90 bp | AGCCCGGACGCCGCTTTTCCAGTTGCTTCTCTAAAGAGAATCTGTACAAAGTTCCTGTCTTGGAGTTTCTaGCACAGGTCCAGGCTGGGG | + |
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Preference number: 2 (lower is better) Translates to: SPDAAFPVASLKRICTKFLSWSF*HRSRLG Trigger: CCCCAGCCTGGACCTGTGTCAGAAACTCCAAGACAG...GAACTTTGTACAGATTCTCTTTAGAGAAGCAACTGGAAAAGCGGCGTCCGGGCT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040159.6 |
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| 3UTR-3UTR CCA 90 bp | AAGCATAAAGCAACTATCAAAACCAGAATGAAACCGAGAGTGCAAGAGCGCAGCGACACAGGTCCAGGCTaGGGTGAAGACAAGCACAAG | + |
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Preference number: 2 (lower is better) Translates to: KHKATIKTRMKPRVQERSDTGPG*GEDKHK Trigger: CTTGTGCTTGTCTTCACCCCAGCCTGGACCTGTGTC...GCTGCGCTCTTGCACTCTCGGTTTCATTCTGGTTTTGATAGTTGCTTTATGCTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040159.6 |
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| 3UTR CAA 90 bp | CTGGGAAGAATGCATACTCTAGGGCCCCATGCTAAAAATCCAACCTaGAGCCCTCCACCTCAACAAACTTATAGCTGGAGTACAAGAGTC | + |
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Preference number: 2 (lower is better) Translates to: LGRMHTLGPHAKNPT*SPPPQQTYSWSTRV Trigger: GACTCTTGTACTCCAGCTATAAGTTTGTTGAGGTGGAGGGCTCAAGGTTGGATTTTTAGCATGGGGCCCTAGAGTATGCATTCTTCCCAG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000040159.6 |
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| 3UTR-3UTR CCA 90 bp | AGCCCGGACGCCGCTTTTCCAGTTGCTTCTCTAAAGAGAATCTGTACAAAGTTCGGGGTTCTGTTCTGTTaGAATTACTGCTGGCAAGGT | + |
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Preference number: 2 (lower is better) Translates to: SPDAAFPVASLKRICTKFGVLFC*NYCWQG Trigger: ACCTTGCCAGCAGTAATTCCAACAGAACAGAACCCC...GAACTTTGTACAGATTCTCTTTAGAGAAGCAACTGGAAAAGCGGCGTCCGGGCT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040159.6 |
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| 3UTR-3UTR TCA 90 bp | AGCCCGGACGCCGCTTTTCCAGTTGCTTCTCTAAAGAGAATCTGTACAAAGTTCCTATCAAAACCAGAATaGAACCGAGAGTGCAAGAGC | + |
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Preference number: 2 (lower is better) Translates to: SPDAAFPVASLKRICTKFLSKPE*NRECKS Trigger: GCTCTTGCACTCTCGGTTTCATTCTGGTTTTGATAG...GAACTTTGTACAGATTCTCTTTAGAGAAGCAACTGGAAAAGCGGCGTCCGGGCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040159.6 |
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| 3UTR-3UTR CCA 90 bp | GGTATTCAGGGTCAAACATTTGGAAAGGGGACAATGGGGACTTGGTATCGGGTTCGGCAACTGGAAGGCTaGTTTGTAGCATACACATAT | + |
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Preference number: 2 (lower is better) Translates to: GIQGQTFGKGTMGTWYRVRQLEG*FVAYTY Trigger: ATATGTGTATGCTACAAACCAGCCTTCCAGTTGCCG...AACCCGATACCAAGTCCCCATTGTCCCCTTTCCAAATGTTTGACCCTGAATACC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040159.6 |
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| 3UTR-3UTR CCA 90 bp | AACAACTCAGAAAACAACCAGTCAGCAAACACTGCCGTGCTCAATCCCAAGCACCTTCTGCAGTCTGAATaGGGTTCTGTTCTGTTGGAA | + |
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Preference number: 2 (lower is better) Translates to: NNSENNQSANTAVLNPKHLLQSE*GSVLLE Trigger: TTCCAACAGAACAGAACCCCATTCAGACTGCAGAAG...GTGCTTGGGATTGAGCACGGCAGTGTTTGCTGACTGGTTGTTTTCTGAGTTGTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040159.6 |
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| 3UTR-3UTR TCA 90 bp | AACAACTCAGAAAACAACCAGTCAGCAAACACTGCCGTGCTCAATCCCAAGCACGCTGAGAAACAACACTaGGCAACAGTTCTTTCTTTC | + |
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Preference number: 2 (lower is better) Translates to: NNSENNQSANTAVLNPKHAEKQH*ATVLSF Trigger: GAAAGAAAGAACTGTTGCTCAGTGTTGTTTCTCAGC...GTGCTTGGGATTGAGCACGGCAGTGTTTGCTGACTGGTTGTTTTCTGAGTTGTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040159.6 |
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| 3UTR-3UTR TCA 90 bp | GGTATTCAGGGTCAAACATTTGGAAAGGGGACAATGGGGACTTGGTATCGGGTTCATACACATATCAGCTaGGAAACAACACTGAGCAAC | + |
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Preference number: 2 (lower is better) Translates to: GIQGQTFGKGTMGTWYRVHTHIS*ETTLSN Trigger: GTTGCTCAGTGTTGTTTCTCAGCTGATATGTGTATG...AACCCGATACCAAGTCCCCATTGTCCCCTTTCCAAATGTTTGACCCTGAATACC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040159.6 |
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| 3UTR-3UTR CCA 90 bp | AGCCCGGACGCCGCTTTTCCAGTTGCTTCTCTAAAGAGAATCTGTACAAAGTTCGTAAAGAGCAATATCTaGCATACAGCAGGCACTAGA | + |
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Preference number: 2 (lower is better) Translates to: SPDAAFPVASLKRICTKFVKSNI*HTAGTR Trigger: TCTAGTGCCTGCTGTATGCCAGATATTGCTCTTTAC...GAACTTTGTACAGATTCTCTTTAGAGAAGCAACTGGAAAAGCGGCGTCCGGGCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040159.6 |
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| 3UTR-3UTR TCA 90 bp | AGCCCGGACGCCGCTTTTCCAGTTGCTTCTCTAAAGAGAATCTGTACAAAGTTCTTCCTAATTTATAGTTaGGGAAATGGAGGCACAGAG | + |
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Preference number: 2 (lower is better) Translates to: SPDAAFPVASLKRICTKFFLIYS*GNGGTE Trigger: CTCTGTGCCTCCATTTCCTCAACTATAAATTAGGAA...GAACTTTGTACAGATTCTCTTTAGAGAAGCAACTGGAAAAGCGGCGTCCGGGCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040159.6 |
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| 3UTR-3UTR CCA 90 bp | GGTATTCAGGGTCAAACATTTGGAAAGGGGACAATGGGGACTTGGTATCGGGTTAACAACATACACTGTTaGGAACAGTCAGAAACAGAG | + |
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Preference number: 2 (lower is better) Translates to: GIQGQTFGKGTMGTWYRVNNIHC*EQSETE Trigger: CTCTGTTTCTGACTGTTCCCAACAGTGTATGTTGTT...AACCCGATACCAAGTCCCCATTGTCCCCTTTCCAAATGTTTGACCCTGAATACC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040159.6 |
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| 3UTR-3UTR CCA 90 bp | AGCCCGGACGCCGCTTTTCCAGTTGCTTCTCTAAAGAGAATCTGTACAAAGTTCCAAGCCGACTATTGTTaGATATTTAGTCTCATGGGA | + |
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Preference number: 2 (lower is better) Translates to: SPDAAFPVASLKRICTKFQADYC*IFSLMG Trigger: TCCCATGAGACTAAATATCCAACAATAGTCGGCTTG...GAACTTTGTACAGATTCTCTTTAGAGAAGCAACTGGAAAAGCGGCGTCCGGGCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040159.6 |
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| 3UTR CAA 90 bp | AGGGTCAAACATTTGGAAAGGGGACAATGGGGACTTGGTATCGGGTaGATTATCTTTAGAACTAAGTATCTAATGGAGTCAAGGCTCGGA | + |
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Preference number: 2 (lower is better) Translates to: RVKHLERGQWGLGIG*IIFRTKYLMESRLG Trigger: TCCGAGCCTTGACTCCATTAGATACTTAGTTCTAAAGATAATCAACCCGATACCAAGTCCCCATTGTCCCCTTTCCAAATGTTTGACCCT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040159.6 |
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| 3UTR-3UTR TCA 90 bp | AACAACTCAGAAAACAACCAGTCAGCAAACACTGCCGTGCTCAATCCCAAGCACCCTTCTTATTCTTCTTaGGGAAACACTGCCAATTAT | + |
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Preference number: 2 (lower is better) Translates to: NNSENNQSANTAVLNPKHPSYSS*GNTANY Trigger: ATAATTGGCAGTGTTTCCTCAAGAAGAATAAGAAGG...GTGCTTGGGATTGAGCACGGCAGTGTTTGCTGACTGGTTGTTTTCTGAGTTGTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040159.6 |
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| 3UTR-3UTR TCA 90 bp | AAGCATAAAGCAACTATCAAAACCAGAATGAAACCGAGAGTGCAAGAGCGCAGCATGTTTCAGAGTCTTTaGAAAATGCCTCTCTCCTGG | + |
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Preference number: 2 (lower is better) Translates to: KHKATIKTRMKPRVQERSMFQSL*KMPLSW Trigger: CCAGGAGAGAGGCATTTTTCAAAGACTCTGAAACAT...GCTGCGCTCTTGCACTCTCGGTTTCATTCTGGTTTTGATAGTTGCTTTATGCTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040159.6 |
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| 3UTR-3UTR GCA 90 bp | AAGCATAAAGCAACTATCAAAACCAGAATGAAACCGAGAGTGCAAGAGCGCAGCAGAGTCTTTGAAAAATaGCTCTCTCCTGGGCAGAAA | + |
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Preference number: 2 (lower is better) Translates to: KHKATIKTRMKPRVQERSRVFEK*LSPGQK Trigger: TTTCTGCCCAGGAGAGAGGCATTTTTCAAAGACTCT...GCTGCGCTCTTGCACTCTCGGTTTCATTCTGGTTTTGATAGTTGCTTTATGCTT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000040159.6 |
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| 3UTR-3UTR TCA 90 bp | AAGCATAAAGCAACTATCAAAACCAGAATGAAACCGAGAGTGCAAGAGCGCAGCTTTTGCCAAAACCAATaGTGCACAGACCCTTTAAAC | + |
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Preference number: 2 (lower is better) Translates to: KHKATIKTRMKPRVQERSFCQNQ*CTDPLN Trigger: GTTTAAAGGGTCTGTGCATCATTGGTTTTGGCAAAA...GCTGCGCTCTTGCACTCTCGGTTTCATTCTGGTTTTGATAGTTGCTTTATGCTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000040159.6 |
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| 3UTR-3UTR TCA 90 bp | AAGCATAAAGCAACTATCAAAACCAGAATGAAACCGAGAGTGCAAGAGCGCAGCCATATTAGTACTCACTaGACACTTGCTACTCAGTGT | + |
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Preference number: 2 (lower is better) Translates to: KHKATIKTRMKPRVQERSHISTH*TLATQC Trigger: ACACTGAGTAGCAAGTGTTCAGTGAGTACTAATATG...GCTGCGCTCTTGCACTCTCGGTTTCATTCTGGTTTTGATAGTTGCTTTATGCTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040159.6 |
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| 3UTR-3UTR GCA 90 bp | AGCCCGGACGCCGCTTTTCCAGTTGCTTCTCTAAAGAGAATCTGTACAAAGTTCTTATACTTAAAATCATaGCCTTTTCTGAGCCAGACA | + |
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Preference number: 2 (lower is better) Translates to: SPDAAFPVASLKRICTKFLYLKS*PFLSQT Trigger: TGTCTGGCTCAGAAAAGGGCATGATTTTAAGTATAA...GAACTTTGTACAGATTCTCTTTAGAGAAGCAACTGGAAAAGCGGCGTCCGGGCT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000040159.6 |
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| 3UTR CAA 90 bp | AGATGGCGCCACCGTAAGAACCTAAACCAAATTAAATTTGTAAATTaGGCTTTGTATTTTCATTACAGGGACAGAGTGATCCATACTAGC | + |
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Preference number: 2 (lower is better) Translates to: RWRHRKNLNQIKFVN*ALYFHYRDRVIHTS Trigger: GCTAGTATGGATCACTCTGTCCCTGTAATGAAAATACAAAGCCAAATTTACAAATTTAATTTGGTTTAGGTTCTTACGGTGGCGCCATCT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040159.6 |
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| 3UTR-3UTR GCA 90 bp | GTTGGTAGATGGCGCCACCGTAAGAACCTAAACCAAATTAAATTTGTAAATTTGGCATTCAAAAATACTTaGCAGTGTTACCTGCCACAT | + |
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Preference number: 2 (lower is better) Translates to: VGRWRHRKNLNQIKFVNLAFKNT*QCYLPH Trigger: ATGTGGCAGGTAACACTGGCAAGTATTTTTGAATGC...CAAATTTACAAATTTAATTTGGTTTAGGTTCTTACGGTGGCGCCATCTACCAAC 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000040159.6 |
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| 3UTR-3UTR GCA 90 bp | GTTGGTAGATGGCGCCACCGTAAGAACCTAAACCAAATTAAATTTGTAAATTTGCCCTTTACTGGATCGTaGTTTATATTAATTCTGGCC | + |
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Preference number: 2 (lower is better) Translates to: VGRWRHRKNLNQIKFVNLPFTGS*FILILA Trigger: GGCCAGAATTAATATAAAGCACGATCCAGTAAAGGG...CAAATTTACAAATTTAATTTGGTTTAGGTTCTTACGGTGGCGCCATCTACCAAC 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040159.6 |
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| 3UTR-3UTR TCA 90 bp | GTTGGTAGATGGCGCCACCGTAAGAACCTAAACCAAATTAAATTTGTAAATTTGACAATTAACAATGGGTaGATCGGGGAACAACATATT | + |
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Preference number: 2 (lower is better) Translates to: VGRWRHRKNLNQIKFVNLTINNG*IGEQHI Trigger: AATATGTTGTTCCCCGATTCACCCATTGTTAATTGT...CAAATTTACAAATTTAATTTGGTTTAGGTTCTTACGGTGGCGCCATCTACCAAC 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040159.6 |
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| 3UTR CCA 72 bp | AGGCCCTGTCTTGGAGTTTCTGACACAGGTCCAGGCTaGGGTGAAGACAAGCACAAGCTCCAACAAGCTCTC | + |
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Preference number: 3 (lower is better) Translates to: RPCLGVSDTGPG*GEDKHKLQQAL Trigger: GAGAGCTTGTTGGAGCTTGTGCTTGTCTTCACCCCAGCCTGGACCTGTGTCAGAAACTCCAAGACAGGGCCT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040159.6 |
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| 3UTR-3UTR CAA 90 bp | AAGCATAAAGCAACTATCAAAACCAGAATGAAACCGAGAGTGCAAGAGCGCAGCGTGCTAGGCCCTGTCTaGGAGTTTCTGACACAGGTC | + |
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Preference number: 3 (lower is better) Translates to: KHKATIKTRMKPRVQERSVLGPV*EFLTQV Trigger: GACCTGTGTCAGAAACTCCAAGACAGGGCCTAGCAC...GCTGCGCTCTTGCACTCTCGGTTTCATTCTGGTTTTGATAGTTGCTTTATGCTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040159.6 |
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| 3UTR GCA 72 bp | ACAACTCAGAAAACAACCAGTCAGCAAACACTGCCGTaGTCAATCCCAAGCACCTCCCTCACGACAAAGAAT | + |
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Preference number: 3 (lower is better) Translates to: TTQKTTSQQTLP*SIPSTSLTTKN Trigger: ATTCTTTGTCGTGAGGGAGGTGCTTGGGATTGAGCACGGCAGTGTTTGCTGACTGGTTGTTTTCTGAGTTGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040159.6 |
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| 3UTR-3UTR CAA 90 bp | AGCCCGGACGCCGCTTTTCCAGTTGCTTCTCTAAAGAGAATCTGTACAAAGTTCTTCAGGGTCAAACATTaGGAAAGGGGACAATGGGGA | + |
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Preference number: 3 (lower is better) Translates to: SPDAAFPVASLKRICTKFFRVKH*ERGQWG Trigger: TCCCCATTGTCCCCTTTCCAAATGTTTGACCCTGAA...GAACTTTGTACAGATTCTCTTTAGAGAAGCAACTGGAAAAGCGGCGTCCGGGCT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000040159.6 |
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| 3UTR-3UTR CAA 90 bp | AACAACTCAGAAAACAACCAGTCAGCAAACACTGCCGTGCTCAATCCCAAGCACCCCTTCTTATTCTTCTaGAGGAAACACTGCCAATTA | + |
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Preference number: 3 (lower is better) Translates to: NNSENNQSANTAVLNPKHPFLFF*RKHCQL Trigger: TAATTGGCAGTGTTTCCTCAAGAAGAATAAGAAGGG...GTGCTTGGGATTGAGCACGGCAGTGTTTGCTGACTGGTTGTTTTCTGAGTTGTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040159.6 |
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| 3UTR-3UTR CAA 90 bp | AGCCCGGACGCCGCTTTTCCAGTTGCTTCTCTAAAGAGAATCTGTACAAAGTTCTGTTCCAAAGACGATTaGCACCAAAATCATGTAGGT | + |
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Preference number: 3 (lower is better) Translates to: SPDAAFPVASLKRICTKFCSKDD*HQNHVG Trigger: ACCTACATGATTTTGGTGCAAATCGTCTTTGGAACA...GAACTTTGTACAGATTCTCTTTAGAGAAGCAACTGGAAAAGCGGCGTCCGGGCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040159.6 |
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| 3UTR TCA 72 bp | AGTTTCATTAGAGTGATACAGGTTGCTTCTGCAGTCTaGATGGGGTTCTGTTCTGTTGGAATTACTGCTGGC | + |
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Preference number: 3 (lower is better) Translates to: SFIRVIQVASAV*MGFCSVGITAG Trigger: GCCAGCAGTAATTCCAACAGAACAGAACCCCATTCAGACTGCAGAAGCAACCTGTATCACTCTAATGAAACT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040159.6 |
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| 3UTR CCA 72 bp | GGTTGCTTCTGCAGTCTGAATGGGGTTCTGTTCTGTTaGAATTACTGCTGGCAAGGTTATCCTCAAATAAGA | + |
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Preference number: 3 (lower is better) Translates to: GCFCSLNGVLFC*NYCWQGYPQIR Trigger: TCTTATTTGAGGATAACCTTGCCAGCAGTAATTCCAACAGAACAGAACCCCATTCAGACTGCAGAAGCAACC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040159.6 |
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| 3UTR TCA 72 bp | GTCTTTGAAAAATGCCTCTCTCCTGGGCAGAAATCCTaGGTGTGTTCCAAAGACGATTTGCACCAAAATCAT | + |
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Preference number: 3 (lower is better) Translates to: VFEKCLSPGQKS*VCSKDDLHQNH Trigger: ATGATTTTGGTGCAAATCGTCTTTGGAACACACTCAGGATTTCTGCCCAGGAGAGAGGCATTTTTCAAAGAC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000040159.6 |
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| 3UTR GCA 72 bp | TCAAGTGTAACAGGGCCTCAGTCTAGCAATACAGTTTaGCAGGCTAAGGGTGTAGAAACAAAACAAAGCAAA | + |
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Preference number: 3 (lower is better) Translates to: SSVTGPQSSNTV*QAKGVETKQSK Trigger: TTTGCTTTGTTTTGTTTCTACACCCTTAGCCTGGCAAACTGTATTGCTAGACTGAGGCCCTGTTACACTTGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040159.6 |
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| 3UTR CCA 72 bp | AGTCTGAATGGGGTTCTGTTCTGTTGGAATTACTGCTaGCAAGGTTATCCTCAAATAAGAAGTCAGCAGGAA | + |
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Preference number: 3 (lower is better) Translates to: SLNGVLFCWNYC*QGYPQIRSQQE Trigger: TTCCTGCTGACTTCTTATTTGAGGATAACCTTGCCAGCAGTAATTCCAACAGAACAGAACCCCATTCAGACT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040159.6 |
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| 3UTR CCA 72 bp | AATCACAGGAAAGTTTTCATTCGGCAACTGGAAGGCTaGTTTGTAGCATACACATATCAGCTGAGAAACAAC | + |
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Preference number: 3 (lower is better) Translates to: NHRKVFIRQLEG*FVAYTYQLRNN Trigger: GTTGTTTCTCAGCTGATATGTGTATGCTACAAACCAGCCTTCCAGTTGCCGAATGAAAACTTTCCTGTGATT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040159.6 |
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| 3UTR CCA 72 bp | ATGGTATTCAGGGTCAAACATTTGGAAAGGGGACAATaGGGACTTGGTATCGGGTTGATTATCTTTAGAACT | + |
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Preference number: 3 (lower is better) Translates to: MVFRVKHLERGQ*GLGIGLIIFRT Trigger: AGTTCTAAAGATAATCAACCCGATACCAAGTCCCCATTGTCCCCTTTCCAAATGTTTGACCCTGAATACCAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040159.6 |
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| 3UTR-3UTR CAA 90 bp | AAGCATAAAGCAACTATCAAAACCAGAATGAAACCGAGAGTGCAAGAGCGCAGCGTTCTACATTCAGTATaGATGATGACCAAAACAAGG | + |
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Preference number: 3 (lower is better) Translates to: KHKATIKTRMKPRVQERSVLHSV*MMTKTR Trigger: CCTTGTTTTGGTCATCATCAATACTGAATGTAGAAC...GCTGCGCTCTTGCACTCTCGGTTTCATTCTGGTTTTGATAGTTGCTTTATGCTT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040159.6 |
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| 3UTR TCA 72 bp | TCAGAAACTCTATTTAAACAGCCAGTTTCATTAGAGTaGTACAGGTTGCTTCTGCAGTCTGAATGGGGTTCT | + |
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Preference number: 3 (lower is better) Translates to: SETLFKQPVSLE*YRLLLQSEWGS Trigger: AGAACCCCATTCAGACTGCAGAAGCAACCTGTATCACTCTAATGAAACTGGCTGTTTAAATAGAGTTTCTGA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040159.6 |
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| 3UTR TCA 72 bp | AAATGGAGGCACAGAGAAATTAAGTTCAAGGTTACATaGACAGTAATGGAGGAGGAACTTAAAAGCCAGGCT | + |
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Preference number: 3 (lower is better) Translates to: KWRHREIKFKVT*TVMEEELKSQA Trigger: AGCCTGGCTTTTAAGTTCCTCCTCCATTACTGTTCATGTAACCTTGAACTTAATTTCTCTGTGCCTCCATTT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040159.6 |
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| 3UTR TCA 72 bp | GATTATAGATCCCAGCCTTCTTACTTACTAGCTTTGTaGCAGTGGAAACATTACTTGAATAGCCTCAGTCTC | + |
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Preference number: 3 (lower is better) Translates to: DYRSQPSYLLAL*QWKHYLNSLSL Trigger: GAGACTGAGGCTATTCAAGTAATGTTTCCACTGTCACAAAGCTAGTAAGTAAGAAGGCTGGGATCTATAATC 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040159.6 |
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| 3UTR GCA 72 bp | ACTGGATCGTGCTTTATATTAATTCTGGCCAAAAGCTaGATTCAAAAATACTTGCCAGTGTTACCTGCCACA | + |
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Preference number: 3 (lower is better) Translates to: TGSCFILILAKS*IQKYLPVLPAT Trigger: TGTGGCAGGTAACACTGGCAAGTATTTTTGAATGCAGCTTTTGGCCAGAATTAATATAAAGCACGATCCAGT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000040159.6 |
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| 3UTR CCA 72 bp | TCTTTAAGGCAGATCTGTTCAGCATTGTGTTCTAACTaGTGTGGTGCAGAAGGTGATTATAAACTAACCACT | + |
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Preference number: 3 (lower is better) Translates to: SLRQICSALCSN*CGAEGDYKLTT Trigger: AGTGGTTAGTTTATAATCACCTTCTGCACCACACCAGTTAGAACACAATGCTGAACAGATCTGCCTTAAAGA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040159.6 |
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| 3UTR TCA 72 bp | TGTTTTAGGTTGTACATTCAATTAGGGCAAGTAGCCTaGAAGCAAGCCGACTATTGTTGGATATTTAGTCTC | + |
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Preference number: 3 (lower is better) Translates to: CFRLYIQLGQVA*KQADYCWIFSL Trigger: GAGACTAAATATCCAACAATAGTCGGCTTGCTTTCAGGCTACTTGCCCTAATTGAATGTACAACCTAAAACA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040159.6 |
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| 3UTR-3UTR CAA 90 bp | GTTGGTAGATGGCGCCACCGTAAGAACCTAAACCAAATTAAATTTGTAAATTTGCGGGGAACAACATATTaGAAAATGCATGATTTACAG | + |
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Preference number: 3 (lower is better) Translates to: VGRWRHRKNLNQIKFVNLRGTTY*KMHDLQ Trigger: CTGTAAATCATGCATTTTCAAATATGTTGTTCCCCG...CAAATTTACAAATTTAATTTGGTTTAGGTTCTTACGGTGGCGCCATCTACCAAC 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040159.6 |
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| 3UTR CCA 72 bp | GAAAGCAAGCCGACTATTGTTGGATATTTAGTCTCATaGGAAACCTGTGGTAGATTTAAAACGATCATAAAT | + |
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Preference number: 3 (lower is better) Translates to: ESKPTIVGYLVS*ETCGRFKTIIN Trigger: ATTTATGATCGTTTTAAATCTACCACAGGTTTCCCATGAGACTAAATATCCAACAATAGTCGGCTTGCTTTC 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040159.6 |
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| CDS-3UTR TCA 90 bp | AACAACTCAGAAAACAACCAGTCAGCAAACACTGCCGTGCTCAATCCCAAGCACGTGTCCATTGTCATCTaGATGCCTTGCATGAGGGTC | + |
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Preference number: 4 (lower is better) Translates to: NNSENNQSANTAVLNPKHVSIVI*MPCMRV Trigger: GACCCTCATGCAAGGCATTCAGATGACAATGGACAC...GTGCTTGGGATTGAGCACGGCAGTGTTTGCTGACTGGTTGTTTTCTGAGTTGTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040159.6 |
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| CDS-3UTR GCA 90 bp | AACAACTCAGAAAACAACCAGTCAGCAAACACTGCCGTGCTCAATCCCAAGCACTTCTCAAGGCTTCCTTaGTTAGGACATAGCCCGCTC | + |
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Preference number: 4 (lower is better) Translates to: NNSENNQSANTAVLNPKHFSRLP*LGHSPL Trigger: GAGCGGGCTATGTCCTAAGCAAGGAAGCCTTGAGAA...GTGCTTGGGATTGAGCACGGCAGTGTTTGCTGACTGGTTGTTTTCTGAGTTGTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040159.6 |
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| CDS-3UTR TCA 90 bp | GGTATTCAGGGTCAAACATTTGGAAAGGGGACAATGGGGACTTGGTATCGGGTTTCAGGTTGTCCACAATaGCGTATGTGTCGTCATCTG | + |
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Preference number: 4 (lower is better) Translates to: GIQGQTFGKGTMGTWYRVSGCPQ*RMCRHL Trigger: CAGATGACGACACATACGTCATTGTGGACAACCTGA...AACCCGATACCAAGTCCCCATTGTCCCCTTTCCAAATGTTTGACCCTGAATACC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040159.6 |
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| CDS-3UTR TCA 90 bp | GGTATTCAGGGTCAAACATTTGGAAAGGGGACAATGGGGACTTGGTATCGGGTTATCTGTCCTTTGAGGTaGCTGTGTCCATTGTCATCT | + |
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Preference number: 4 (lower is better) Translates to: GIQGQTFGKGTMGTWYRVICPLR*LCPLSS Trigger: AGATGACAATGGACACAGTCACCTCAAAGGACAGAT...AACCCGATACCAAGTCCCCATTGTCCCCTTTCCAAATGTTTGACCCTGAATACC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040159.6 |
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| 3UTR CAA 72 bp | ATGCATACTCTAGGGCCCCATGCTAAAAATCCAACCTaGAGCCCTCCACCTCAACAAACTTATAGCTGGAGT | + |
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Preference number: 4 (lower is better) Translates to: MHTLGPHAKNPT*SPPPQQTYSWS Trigger: ACTCCAGCTATAAGTTTGTTGAGGTGGAGGGCTCAAGGTTGGATTTTTAGCATGGGGCCCTAGAGTATGCAT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000040159.6 |
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| CDS-3UTR CCA 90 bp | AACAACTCAGAAAACAACCAGTCAGCAAACACTGCCGTGCTCAATCCCAAGCACTCCCAATGGTATCTCTaGAATCTCCAGCTTCTACAT | + |
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Preference number: 4 (lower is better) Translates to: NNSENNQSANTAVLNPKHSQWYL*NLQLLH Trigger: ATGTAGAAGCTGGAGATTCCAGAGATACCATTGGGA...GTGCTTGGGATTGAGCACGGCAGTGTTTGCTGACTGGTTGTTTTCTGAGTTGTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040159.6 |
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| CDS-3UTR CCA 90 bp | AGCCCGGACGCCGCTTTTCCAGTTGCTTCTCTAAAGAGAATCTGTACAAAGTTCTCTGGTACAAATGGATaGAAGGTTTCTTTCCCAATG | + |
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Preference number: 4 (lower is better) Translates to: SPDAAFPVASLKRICTKFSGTNG*KVSFPM Trigger: CATTGGGAAAGAAACCTTCCATCCATTTGTACCAGA...GAACTTTGTACAGATTCTCTTTAGAGAAGCAACTGGAAAAGCGGCGTCCGGGCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040159.6 |
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| CDS-3UTR CCA 90 bp | AAGCATAAAGCAACTATCAAAACCAGAATGAAACCGAGAGTGCAAGAGCGCAGCGTGTTCTGGTACAAATaGATGGAAGGTTTCTTTCCC | + |
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Preference number: 4 (lower is better) Translates to: KHKATIKTRMKPRVQERSVFWYK*MEGFFP Trigger: GGGAAAGAAACCTTCCATCCATTTGTACCAGAACAC...GCTGCGCTCTTGCACTCTCGGTTTCATTCTGGTTTTGATAGTTGCTTTATGCTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040159.6 |
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| 3UTR CAA 72 bp | CCAAATCAACTGCAAGAAGACAGCACTCCGAGTAGCTaGAAGCTAAGCATAAAGCAACTATCAAAACCAGAA | + |
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Preference number: 4 (lower is better) Translates to: PNQLQEDSTPSS*KLSIKQLSKPE Trigger: TTCTGGTTTTGATAGTTGCTTTATGCTTAGCTTCAAGCTACTCGGAGTGCTGTCTTCTTGCAGTTGATTTGG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040159.6 |
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| CDS-3UTR GCA 90 bp | TGGTTTGTAGCATACACATATCAGCTGAGAAACAACACTGAGCAACAGTTCTTTGTATGTGTCGTCATCTaGTTTCATAAACCAGTCAGC | + |
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Preference number: 4 (lower is better) Translates to: WFVAYTYQLRNNTEQQFFVCVVI*FHKPVS Trigger: GCTGACTGGTTTATGAAAGCAGATGACGACACATAC...AAAGAACTGTTGCTCAGTGTTGTTTCTCAGCTGATATGTGTATGCTACAAACCA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040159.6 |
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| CDS-3UTR CAA 90 bp | GGTATTCAGGGTCAAACATTTGGAAAGGGGACAATGGGGACTTGGTATCGGGTTAGAAGCCATCTCAGGTaGTCCACAATGACGTATGTG | + |
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Preference number: 5 (lower is better) Translates to: GIQGQTFGKGTMGTWYRVRSHLR*STMTYV Trigger: CACATACGTCATTGTGGACAACCTGAGATGGCTTCT...AACCCGATACCAAGTCCCCATTGTCCCCTTTCCAAATGTTTGACCCTGAATACC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040159.6 |
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| CDS-3UTR CAA 90 bp | AACAACTCAGAAAACAACCAGTCAGCAAACACTGCCGTGCTCAATCCCAAGCACCACAGTAGGGAAGTCTaGATTTTCTTCCGAACTCAT | + |
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Preference number: 5 (lower is better) Translates to: NNSENNQSANTAVLNPKHHSREV*IFFRTH Trigger: ATGAGTTCGGAAGAAAATCAAGACTTCCCTACTGTG...GTGCTTGGGATTGAGCACGGCAGTGTTTGCTGACTGGTTGTTTTCTGAGTTGTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040159.6 |
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| CDS-3UTR CAA 90 bp | TGGTTTGTAGCATACACATATCAGCTGAGAAACAACACTGAGCAACAGTTCTTTTGGCTGGAATCTGCATaGAAGTTCATCTGTCCTTTG | + |
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Preference number: 5 (lower is better) Translates to: WFVAYTYQLRNNTEQQFFWLESA*KFICPL Trigger: CAAAGGACAGATGAACTTCAATGCAGATTCCAGCCA...AAAGAACTGTTGCTCAGTGTTGTTTCTCAGCTGATATGTGTATGCTACAAACCA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040159.6 |
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| CDS TCA 72 bp | CATCTGTCCTTTGAGGTGACTGTGTCCATTGTCATCTaGATGCCTTGCATGAGGGTCATTGTGAAGCATGTT | + |
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Preference number: 6 (lower is better) Translates to: HLSFEVTVSIVI*MPCMRVIVKHV Trigger: AACATGCTTCACAATGACCCTCATGCAAGGCATTCAGATGACAATGGACACAGTCACCTCAAAGGACAGATG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040159.6 |
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