Pregenerated sensors for C1D (Mus musculus)
Ensembl gene IDs: ENSMUSG00000000581Ensembl transcript IDs: ENSMUST00000000594.9
Found 29 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | ACAGAGAGCCGCCATGACTCATCAGCCTTCTCTACCTGGTGGAGCTaGTCACACTGCCTCATCTGGAGGGCTTGTTCACTCACGCAGTGG | + |
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Preference number: 1 (lower is better) Translates to: TESRHDSSAFSTWWS*SHCLIWRACSLTQW Trigger: CCACTGCGTGAGTGAACAAGCCCTCCAGATGAGGCAGTGTGAGCAGCTCCACCAGGTAGAGAAGGCTGATGAGTCATGGCGGCTCTCTGT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000000594.9 |
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| 3UTR CCA 90 bp | AAGAGAACAGAGAGCCGCCATGACTCATCAGCCTTCTCTACCTGGTaGAGCTGCTCACACTGCCTCATCTGGAGGGCTTGTTCACTCACG | + |
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Preference number: 1 (lower is better) Translates to: KRTESRHDSSAFSTW*SCSHCLIWRACSLT Trigger: CGTGAGTGAACAAGCCCTCCAGATGAGGCAGTGTGAGCAGCTCCACCAGGTAGAGAAGGCTGATGAGTCATGGCGGCTCTCTGTTCTCTT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000000594.9 |
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| 3UTR CCA 90 bp | ACCAAGAGAACAGAGAGCCGCCATGACTCATCAGCCTTCTCTACCTaGTGGAGCTGCTCACACTGCCTCATCTGGAGGGCTTGTTCACTC | + |
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Preference number: 1 (lower is better) Translates to: TKRTESRHDSSAFST*WSCSHCLIWRACSL Trigger: GAGTGAACAAGCCCTCCAGATGAGGCAGTGTGAGCAGCTCCACCAGGTAGAGAAGGCTGATGAGTCATGGCGGCTCTCTGTTCTCTTGGT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000000594.9 |
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| 3UTR TCA 90 bp | AGAAAACAGAGTGGGTATTTAAGTCACTGTATTTCTCATCATTACTaGAAACAAATGTCCTTACACCTCCAGTCTACAGATAGCACACTT | + |
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Preference number: 1 (lower is better) Translates to: RKQSGYLSHCISHHY*KQMSLHLQSTDSTL Trigger: AAGTGTGCTATCTGTAGACTGGAGGTGTAAGGACATTTGTTTTCAGTAATGATGAGAAATACAGTGACTTAAATACCCACTCTGTTTTCT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000000594.9 |
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| 3UTR TCA 90 bp | TCATTTAGATCAATGTCTACATGTCTGCGATTCCTCCAATTATGTTaGTTCCCAAGAAGATTAATAAAACATGCAACTAACACCGTCCCT | + |
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Preference number: 1 (lower is better) Translates to: SFRSMSTCLRFLQLC*FPRRLIKHATNTVP Trigger: AGGGACGGTGTTAGTTGCATGTTTTATTAATCTTCTTGGGAATCAACATAATTGGAGGAATCGCAGACATGTAGACATTGATCTAAATGA 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000000594.9 |
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| 3UTR GCA 90 bp | CTTTCTGCATCTATTGACTTAATGTTTATGAATCAGATTTTAGCATaGCTTACAAAGTCCATCATAACTTCAGACCAGTTCCACTATCCG | + |
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Preference number: 1 (lower is better) Translates to: LSASIDLMFMNQILA*LTKSIITSDQFHYP Trigger: CGGATAGTGGAACTGGTCTGAAGTTATGATGGACTTTGTAAGGCATGCTAAAATCTGATTCATAAACATTAAGTCAATAGATGCAGAAAG 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000000594.9 |
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| 3UTR CAA 90 bp | CTTCTCTACCTGGTGGAGCTGCTCACACTGCCTCATCTGGAGGGCTaGTTCACTCACGCAGTGGACAGCAAGAAGCATGTGAGCTACCCA | + |
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Preference number: 2 (lower is better) Translates to: LLYLVELLTLPHLEG*FTHAVDSKKHVSYP Trigger: TGGGTAGCTCACATGCTTCTTGCTGTCCACTGCGTGAGTGAACAAGCCCTCCAGATGAGGCAGTGTGAGCAGCTCCACCAGGTAGAGAAG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000000594.9 |
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| 3UTR-3UTR CCA 90 bp | CTGAAACATCTGGACCCTGGACACCACTGGGACCATCTGGGCAAGCTTAGTCACTCAGCCTTCTCTACCTaGTGGAGCTGCTCACACTGC | + |
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Preference number: 2 (lower is better) Translates to: LKHLDPGHHWDHLGKLSHSAFST*WSCSHC Trigger: GCAGTGTGAGCAGCTCCACCAGGTAGAGAAGGCTGA...GTGACTAAGCTTGCCCAGATGGTCCCAGTGGTGTCCAGGGTCCAGATGTTTCAG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000000594.9 |
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| 3UTR-3UTR CCA 90 bp | CTGAAACATCTGGACCCTGGACACCACTGGGACCATCTGGGCAAGCTTAGTCACTCACACTGCCTCATCTaGAGGGCTTGTTCACTCACG | + |
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Preference number: 2 (lower is better) Translates to: LKHLDPGHHWDHLGKLSHSHCLI*RACSLT Trigger: CGTGAGTGAACAAGCCCTCCAGATGAGGCAGTGTGA...GTGACTAAGCTTGCCCAGATGGTCCCAGTGGTGTCCAGGGTCCAGATGTTTCAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000000594.9 |
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| 3UTR-3UTR TCA 90 bp | TCACTCTGCTGTGAGGGCCAGTGCCTCTTTTGCTTCCTGTTGTTTAACAAAGTCACAGCAAGAAGCATGTaGGCTACCCAGCTACCATAC | + |
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Preference number: 2 (lower is better) Translates to: SLCCEGQCLFCFLLFNKVTARSM*ATQLPY Trigger: GTATGGTAGCTGGGTAGCTCACATGCTTCTTGCTGT...GACTTTGTTAAACAACAGGAAGCAAAAGAGGCACTGGCCCTCACAGCAGAGTGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000000594.9 |
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| 3UTR-3UTR CCA 90 bp | CTGAAACATCTGGACCCTGGACACCACTGGGACCATCTGGGCAAGCTTAGTCACGAACAGAAAACAGAGTaGGTATTTAAGTCACTGTAT | + |
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Preference number: 2 (lower is better) Translates to: LKHLDPGHHWDHLGKLSHEQKTE*VFKSLY Trigger: ATACAGTGACTTAAATACCCACTCTGTTTTCTGTTC...GTGACTAAGCTTGCCCAGATGGTCCCAGTGGTGTCCAGGGTCCAGATGTTTCAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000000594.9 |
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| 3UTR-3UTR GCA 90 bp | CTGATATCAGAGCTGAGACTTTCTGCATCTATTGACTTAATGTTTATGAATCAGTGGAGCTGCTCACACTaGCTCATCTGGAGGGCTTGT | + |
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Preference number: 2 (lower is better) Translates to: LISELRLSASIDLMFMNQWSCSH*LIWRAC Trigger: ACAAGCCCTCCAGATGAGGCAGTGTGAGCAGCTCCA...CTGATTCATAAACATTAAGTCAATAGATGCAGAAAGTCTCAGCTCTGATATCAG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000000594.9 |
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| 3UTR-3UTR TCA 90 bp | CTGATATCAGAGCTGAGACTTTCTGCATCTATTGACTTAATGTTTATGAATCAGTGGCACTTCTACACATaGCTATGTGGGCCTAGAGAA | + |
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Preference number: 2 (lower is better) Translates to: LISELRLSASIDLMFMNQWHFYT*LCGPRE Trigger: TTCTCTAGGCCCACATAGTCATGTGTAGAAGTGCCA...CTGATTCATAAACATTAAGTCAATAGATGCAGAAAGTCTCAGCTCTGATATCAG 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000000594.9 |
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| 3UTR CCA 72 bp | GAGAGCCGCCATGACTCATCAGCCTTCTCTACCTGGTaGAGCTGCTCACACTGCCTCATCTGGAGGGCTTGT | + |
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Preference number: 3 (lower is better) Translates to: ESRHDSSAFSTW*SCSHCLIWRAC Trigger: ACAAGCCCTCCAGATGAGGCAGTGTGAGCAGCTCCACCAGGTAGAGAAGGCTGATGAGTCATGGCGGCTCTC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000000594.9 |
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| 3UTR CCA 72 bp | ACAGAGAGCCGCCATGACTCATCAGCCTTCTCTACCTaGTGGAGCTGCTCACACTGCCTCATCTGGAGGGCT | + |
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Preference number: 3 (lower is better) Translates to: TESRHDSSAFST*WSCSHCLIWRA Trigger: AGCCCTCCAGATGAGGCAGTGTGAGCAGCTCCACCAGGTAGAGAAGGCTGATGAGTCATGGCGGCTCTCTGT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000000594.9 |
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| 3UTR GCA 72 bp | TCATCAGCCTTCTCTACCTGGTGGAGCTGCTCACACTaGCTCATCTGGAGGGCTTGTTCACTCACGCAGTGG | + |
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Preference number: 3 (lower is better) Translates to: SSAFSTWWSCSH*LIWRACSLTQW Trigger: CCACTGCGTGAGTGAACAAGCCCTCCAGATGAGGCAGTGTGAGCAGCTCCACCAGGTAGAGAAGGCTGATGA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000000594.9 |
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| 3UTR GCA 72 bp | CGCCATGACTCATCAGCCTTCTCTACCTGGTGGAGCTaGTCACACTGCCTCATCTGGAGGGCTTGTTCACTC | + |
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Preference number: 3 (lower is better) Translates to: RHDSSAFSTWWS*SHCLIWRACSL Trigger: GAGTGAACAAGCCCTCCAGATGAGGCAGTGTGAGCAGCTCCACCAGGTAGAGAAGGCTGATGAGTCATGGCG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000000594.9 |
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| 3UTR CCA 72 bp | TTCTCTACCTGGTGGAGCTGCTCACACTGCCTCATCTaGAGGGCTTGTTCACTCACGCAGTGGACAGCAAGA | + |
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Preference number: 3 (lower is better) Translates to: FSTWWSCSHCLI*RACSLTQWTAR Trigger: TCTTGCTGTCCACTGCGTGAGTGAACAAGCCCTCCAGATGAGGCAGTGTGAGCAGCTCCACCAGGTAGAGAA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000000594.9 |
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| 3UTR TCA 72 bp | CTATCTGATATCAGAGCTGAGACTTTCTGCATCTATTaGCTTAATGTTTATGAATCAGATTTTAGCATGCCT | + |
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Preference number: 3 (lower is better) Translates to: LSDIRAETFCIY*LNVYESDFSMP Trigger: AGGCATGCTAAAATCTGATTCATAAACATTAAGTCAATAGATGCAGAAAGTCTCAGCTCTGATATCAGATAG 35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000000594.9 |
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| 3UTR CAA 72 bp | CTGGTGGAGCTGCTCACACTGCCTCATCTGGAGGGCTaGTTCACTCACGCAGTGGACAGCAAGAAGCATGTG | + |
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Preference number: 4 (lower is better) Translates to: LVELLTLPHLEG*FTHAVDSKKHV Trigger: CACATGCTTCTTGCTGTCCACTGCGTGAGTGAACAAGCCCTCCAGATGAGGCAGTGTGAGCAGCTCCACCAG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000000594.9 |
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| CDS-3UTR GCA 90 bp | CTGAAACATCTGGACCCTGGACACCACTGGGACCATCTGGGCAAGCTTAGTCACATTCTTTCCAGTTCCTaGTTCACTGGATGCTCTTTG | + |
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Preference number: 4 (lower is better) Translates to: LKHLDPGHHWDHLGKLSHILSSS*FTGCSL Trigger: CAAAGAGCATCCAGTGAAGCAGGAACTGGAAAGAAT...GTGACTAAGCTTGCCCAGATGGTCCCAGTGGTGTCCAGGGTCCAGATGTTTCAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000000594.9 |
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| CDS-3UTR TCA 90 bp | TCATCTGGAGGGCTTGTTCACTCACGCAGTGGACAGCAAGAAGCATGTGAGCTATGTTCATGTAGACTCTaGTTCTTTCCAGTTCCTGCT | + |
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Preference number: 4 (lower is better) Translates to: SSGGLVHSRSGQQEACELCSCRL*FFPVPA Trigger: AGCAGGAACTGGAAAGAATCAGAGTCTACATGAACA...TAGCTCACATGCTTCTTGCTGTCCACTGCGTGAGTGAACAAGCCCTCCAGATGA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000000594.9 |
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| CDS-3UTR CCA 90 bp | CTGATATCAGAGCTGAGACTTTCTGCATCTATTGACTTAATGTTTATGAATCAGGTGTGCTTTTTGCTTTaGGTTCCCAGAGTGCGTTCT | + |
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Preference number: 4 (lower is better) Translates to: LISELRLSASIDLMFMNQVCFLL*VPRVRS Trigger: AGAACGCACTCTGGGAACCCAAAGCAAAAAGCACAC...CTGATTCATAAACATTAAGTCAATAGATGCAGAAAGTCTCAGCTCTGATATCAG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000000594.9 |
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| CDS-3UTR GCA 90 bp | CTGATATCAGAGCTGAGACTTTCTGCATCTATTGACTTAATGTTTATGAATCAGTTTTGGTGTGCTTTTTaGTTTGGGTTCCCAGAGTGC | + |
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Preference number: 4 (lower is better) Translates to: LISELRLSASIDLMFMNQFWCAF*FGFPEC Trigger: GCACTCTGGGAACCCAAAGCAAAAAGCACACCAAAA...CTGATTCATAAACATTAAGTCAATAGATGCAGAAAGTCTCAGCTCTGATATCAG 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000000594.9 |
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| CDS-3UTR CCA 90 bp | TTGATTCCTCCTGTGCCTAAGGGGCAGTATTTAATAAAGAAGATATTTCAAAACCAGTTCCTGCTTCACTaGATGCTCTTTGGGATTAAC | + |
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Preference number: 4 (lower is better) Translates to: LIPPVPKGQYLIKKIFQNQFLLH*MLFGIN Trigger: GTTAATCCCAAAGAGCATCCAGTGAAGCAGGAACTG...GTTTTGAAATATCTTCTTTATTAAATACTGCCCCTTAGGCACAGGAGGAATCAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000000594.9 |
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| CDS-3UTR CCA 90 bp | ATGCTCATGAATGTTCTTTCACATCACAAACTATCTGATATCAGAGCTGAGACTTTTATTAGCCACTTTTaGTGTGCTTTTTGCTTTGGG | + |
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Preference number: 4 (lower is better) Translates to: MLMNVLSHHKLSDIRAETFISHF*CAFCFG Trigger: CCCAAAGCAAAAAGCACACCAAAAGTGGCTAATAAA...AGTCTCAGCTCTGATATCAGATAGTTTGTGATGTGAAAGAACATTCATGAGCAT 37% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000000594.9 |
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| CDS-3UTR CAA 90 bp | CTGAAACATCTGGACCCTGGACACCACTGGGACCATCTGGGCAAGCTTAGTCACGGTGTGCTTTTTGCTTaGGGTTCCCAGAGTGCGTTC | + |
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Preference number: 5 (lower is better) Translates to: LKHLDPGHHWDHLGKLSHGVLFA*GSQSAF Trigger: GAACGCACTCTGGGAACCCAAAGCAAAAAGCACACC...GTGACTAAGCTTGCCCAGATGGTCCCAGTGGTGTCCAGGGTCCAGATGTTTCAG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000000594.9 |
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| CDS-3UTR CAA 90 bp | TCACTCTGCTGTGAGGGCCAGTGCCTCTTTTGCTTCCTGTTGTTTAACAAAGTCCTTTTGGTGTGCTTTTaGCTTTGGGTTCCCAGAGTG | + |
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Preference number: 5 (lower is better) Translates to: SLCCEGQCLFCFLLFNKVLLVCF*LWVPRV Trigger: CACTCTGGGAACCCAAAGCAAAAAGCACACCAAAAG...GACTTTGTTAAACAACAGGAAGCAAAAGAGGCACTGGCCCTCACAGCAGAGTGA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000000594.9 |
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| CDS-3UTR CAA 90 bp | CTGATATCAGAGCTGAGACTTTCTGCATCTATTGACTTAATGTTTATGAATCAGAAACTAAATCCACCTTaGCTTGTTCCAATGGGTCCA | + |
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Preference number: 5 (lower is better) Translates to: LISELRLSASIDLMFMNQKLNPP*LVPMGP Trigger: TGGACCCATTGGAACAAGCAAAGGTGGATTTAGTTT...CTGATTCATAAACATTAAGTCAATAGATGCAGAAAGTCTCAGCTCTGATATCAG 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000000594.9 |
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