RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for BVES (Mus musculus)

Ensembl gene IDs: ENSMUSG00000071317

Ensembl transcript IDs: ENSMUST00000095715.5

Found 101 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp ACAGCTAGTGTCTGTGGCCCTCCCTCACTTCCCTTCTGGAGGGACTaGAGCAAACCACCCAAAGGTCACAACAGAGTGTGGGACTTCTCC +
Preference number: 1 (lower is better)
Translates to: TASVCGPPSLPFWRD*SKPPKGHNRVWDFS
Trigger: GGAGAAGTCCCACACTCTGTTGTGACCTTTGGGTGGTTTGCTTCAGTCCCTCCAGAAGGGAAGTGAGGGAGGGCCACAGACACTAGCTGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000095715.5
3UTR GCA 90 bp TGGTGGCCTCTGACCCACATCAAGCCTCAGACGACAGATGGTACCTaGCTGTTAAAGCATAACAGGGTGATGGGTGGGGACAGAGAACTC +
Preference number: 1 (lower is better)
Translates to: WWPLTHIKPQTTDGT*LLKHNRVMGGDREL
Trigger: GAGTTCTCTGTCCCCACCCATCACCCTGTTATGCTTTAACAGGCAGGTACCATCTGTCGTCTGAGGCTTGATGTGGGTCAGAGGCCACCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000095715.5
3UTR CCA 90 bp CTTCCACACCTTACCGCAGGTCCAGGCTCCAGAGTCACTGATAAATaGCATGGGATGAGGTCATTCACGGCCCATTCAGATAAAGGCAGT +
Preference number: 1 (lower is better)
Translates to: LPHLTAGPGSRVTDK*HGMRSFTAHSDKGS
Trigger: ACTGCCTTTATCTGAATGGGCCGTGAATGACCTCATCCCATGCCATTTATCAGTGACTCTGGAGCCTGGACCTGCGGTAAGGTGTGGAAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000095715.5
3UTR TCA 90 bp TCCAAATTCCAAGACAGAAAGTCTGGTTTAGCTGAGAGTTGGCACTaGGCTCAGAAATGCTTCCACACCTTACCGCAGGTCCAGGCTCCA +
Preference number: 1 (lower is better)
Translates to: SKFQDRKSGLAESWH*AQKCFHTLPQVQAP
Trigger: TGGAGCCTGGACCTGCGGTAAGGTGTGGAAGCATTTCTGAGCTCAGTGCCAACTCTCAGCTAAACCAGACTTTCTGTCTTGGAATTTGGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000095715.5
3UTR GCA 90 bp GAAGCACCACACATGAAGACTGGTCACAGTGGAATCCGATATTCCTaGCTTCTCAGGGGGTGTTATTTGCAGAATGACTGTAAATTAGCC +
Preference number: 1 (lower is better)
Translates to: EAPHMKTGHSGIRYS*LLRGCYLQNDCKLA
Trigger: GGCTAATTTACAGTCATTCTGCAAATAACACCCCCTGAGAAGGCAGGAATATCGGATTCCACTGTGACCAGTCTTCATGTGTGGTGCTTC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000095715.5
3UTR GCA 90 bp AAGTTGTCCGTAGGCCTAACTTGGAACTATTTTCCTGTTCTTTTCTaGTCCTTTGCAGTCAGGTCTATGTGGGAGGGCTATTCAATGGCT +
Preference number: 1 (lower is better)
Translates to: KLSVGLTWNYFPVLF*SFAVRSMWEGYSMA
Trigger: AGCCATTGAATAGCCCTCCCACATAGACCTGACTGCAAAGGAGCAGAAAAGAACAGGAAAATAGTTCCAAGTTAGGCCTACGGACAACTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000095715.5
3UTR CCA 90 bp GCTCTGCCCCGTGGATTTGCTCTTGACCACAGTTCTGGAAACAGCTaGCCCTTAAATAAATATTCTGTTGTTTGGAGACAAAGTCTTACT +
Preference number: 1 (lower is better)
Translates to: ALPRGFALDHSSGNS*PLNKYSVVWRQSLT
Trigger: AGTAAGACTTTGTCTCCAAACAACAGAATATTTATTTAAGGGCCAGCTGTTTCCAGAACTGTGGTCAAGAGCAAATCCACGGGGCAGAGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000095715.5
3UTR TCA 90 bp CCCTTAAATAAATATTCTGTTGTTTGGAGACAAAGTCTTACTAAGTaGCCCCAGGTGGACCTCAAACTCTTCATGCTCCTACCTCAGCCT +
Preference number: 1 (lower is better)
Translates to: PLNKYSVVWRQSLTK*PQVDLKLFMLLPQP
Trigger: AGGCTGAGGTAGGAGCATGAAGAGTTTGAGGTCCACCTGGGGTCACTTAGTAAGACTTTGTCTCCAAACAACAGAATATTTATTTAAGGG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000095715.5
3UTR CCA 90 bp TGCTCATCTGTGGCAATGAATCTAAAGTTGTCCGTAGGCCTAACTTaGAACTATTTTCCTGTTCTTTTCTGCTCCTTTGCAGTCAGGTCT +
Preference number: 1 (lower is better)
Translates to: CSSVAMNLKLSVGLT*NYFPVLFCSFAVRS
Trigger: AGACCTGACTGCAAAGGAGCAGAAAAGAACAGGAAAATAGTTCCAAGTTAGGCCTACGGACAACTTTAGATTCATTGCCACAGATGAGCA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000095715.5
3UTR CCA 90 bp TTCAATGGCTCAGAGCTCCTGTTCGCCAAGTCTCTTTGTCGTCCTTaGAGGTCTTTAAAAATAGTTTCATGTTTCTTACTCAGACTAAAT +
Preference number: 1 (lower is better)
Translates to: FNGSELLFAKSLCRP*RSLKIVSCFLLRLN
Trigger: ATTTAGTCTGAGTAAGAAACATGAAACTATTTTTAAAGACCTCCAAGGACGACAAAGAGACTTGGCGAACAGGAGCTCTGAGCCATTGAA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000095715.5
3UTR CCA 90 bp TTGGAGGTCTTTAAAAATAGTTTCATGTTTCTTACTCAGACTAAATaGCTCTCTGAAGATCCCTCGCCACAAGATTCTGATCTTTGTTAT +
Preference number: 1 (lower is better)
Translates to: LEVFKNSFMFLTQTK*LSEDPSPQDSDLCY
Trigger: ATAACAAAGATCAGAATCTTGTGGCGAGGGATCTTCAGAGAGCCATTTAGTCTGAGTAAGAAACATGAAACTATTTTTAAAGACCTCCAA
37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000095715.5
3UTR-3UTR CCA 90 bp CCAATCAGTGGCCTTAGCTGGGTGGCCTGTGCGCCACTGTCAGCTGAAGCAAATGGTCACAACAGAGTGTaGGACTTCTCCTGCTCACTC +
Preference number: 2 (lower is better)
Translates to: PISGLSWVACAPLSAEANGHNRV*DFSCSL
Trigger: GAGTGAGCAGGAGAAGTCCCACACTCTGTTGTGACC...ATTTGCTTCAGCTGACAGTGGCGCACAGGCCACCCAGCTAAGGCCACTGATTGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000095715.5
3UTR-3UTR CCA 90 bp CTAAGGTGGTGGCCTCTGACCCACATCAAGCCTCAGACGACAGATGGTACCTGCGCTAACACAAGGAGCTaGCTGACAGGACAGGTAGCA +
Preference number: 2 (lower is better)
Translates to: LRWWPLTHIKPQTTDGTCANTRS*LTGQVA
Trigger: TGCTACCTGTCCTGTCAGCCAGCTCCTTGTGTTAGC...GCAGGTACCATCTGTCGTCTGAGGCTTGATGTGGGTCAGAGGCCACCACCTTAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000095715.5
3UTR-3UTR CCA 90 bp CTAAGGTGGTGGCCTCTGACCCACATCAAGCCTCAGACGACAGATGGTACCTGCCTAAGTGACCCCAGGTaGACCTCAAACTCTTCATGC +
Preference number: 2 (lower is better)
Translates to: LRWWPLTHIKPQTTDGTCLSDPR*TSNSSC
Trigger: GCATGAAGAGTTTGAGGTCCACCTGGGGTCACTTAG...GCAGGTACCATCTGTCGTCTGAGGCTTGATGTGGGTCAGAGGCCACCACCTTAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000095715.5
3UTR-3UTR TCA 90 bp GGGTGGCCTGTGCGCCACTGTCAGCTGAAGCAAATGATTTGGGCAAAACCTAGTTGGTGCCACAGCCTGTaGTATTCACTCAGCCCATCT +
Preference number: 2 (lower is better)
Translates to: GWPVRHCQLKQMIWAKPSWCHSL*YSLSPS
Trigger: AGATGGGCTGAGTGAATATCACAGGCTGTGGCACCA...ACTAGGTTTTGCCCAAATCATTTGCTTCAGCTGACAGTGGCGCACAGGCCACCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000095715.5
3UTR-3UTR TCA 90 bp TGTAAGCCACAGTGTCTGGCTCAGTACATCTGCTTCTGTGATCCCAGAAGCCGAGCTGAGAGTTGGCACTaGGCTCAGAAATGCTTCCAC +
Preference number: 2 (lower is better)
Translates to: CKPQCLAQYICFCDPRSRAESWH*AQKCFH
Trigger: GTGGAAGCATTTCTGAGCTCAGTGCCAACTCTCAGC...TCGGCTTCTGGGATCACAGAAGCAGATGTACTGAGCCAGACACTGTGGCTTACA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000095715.5
3UTR-3UTR TCA 90 bp GACCCCCTGGTCACTCCAACCTTAAAGCCAAGGCTAAGTCACCACTGCCTTCATGTACATCTGCTTCTGTaGTCCCAGAAGCCGACTGAA +
Preference number: 2 (lower is better)
Translates to: DPLVTPTLKPRLSHHCLHVHLLL*SQKPTE
Trigger: TTCAGTCGGCTTCTGGGATCACAGAAGCAGATGTAC...ATGAAGGCAGTGGTGACTTAGCCTTGGCTTTAAGGTTGGAGTGACCAGGGGGTC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000095715.5
3UTR-3UTR TCA 90 bp GGTCACTCCAACCTTAAAGCCAAGGCTAAGTCACCACTGCCTTCATTGTTTCAAGGAGAGTGGCCCCAGTaGGGGAATCACTTCTGGTCT +
Preference number: 2 (lower is better)
Translates to: GHSNLKAKAKSPLPSLFQGEWPQ*GNHFWS
Trigger: AGACCAGAAGTGATTCCCTCACTGGGGCCACTCTCC...TTGAAACAATGAAGGCAGTGGTGACTTAGCCTTGGCTTTAAGGTTGGAGTGACC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000095715.5
3UTR-3UTR CCA 90 bp GCCTCTGACCCACATCAAGCCTCAGACGACAGATGGTACCTGCCTGTTAAAGCAGTAAGCCACAGTGTCTaGCTCAGTACATCTGCTTCT +
Preference number: 2 (lower is better)
Translates to: ASDPHQASDDRWYLPVKAVSHSV*LSTSAS
Trigger: AGAAGCAGATGTACTGAGCCAGACACTGTGGCTTAC...TGCTTTAACAGGCAGGTACCATCTGTCGTCTGAGGCTTGATGTGGGTCAGAGGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000095715.5
3UTR-3UTR TCA 90 bp GACCCCCTGGTCACTCCAACCTTAAAGCCAAGGCTAAGTCACCACTGCCTTCATATGTTCCAGTTGGTTTaGGCAGATGAAGCAAATGTG +
Preference number: 2 (lower is better)
Translates to: DPLVTPTLKPRLSHHCLHMFQLV*ADEANV
Trigger: CACATTTGCTTCATCTGCTCAAACCAACTGGAACAT...ATGAAGGCAGTGGTGACTTAGCCTTGGCTTTAAGGTTGGAGTGACCAGGGGGTC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000095715.5
3UTR-3UTR CCA 90 bp TTAGCTGGGTGGCCTGTGCGCCACTGTCAGCTGAAGCAAATGATTTGGGCAAAAAATCACTTCTGGTCTTaGGGTGGGAAACAAGAACAG +
Preference number: 2 (lower is better)
Translates to: LAGWPVRHCQLKQMIWAKNHFWS*GGKQEQ
Trigger: CTGTTCTTGTTTCCCACCCCAAGACCAGAAGTGATT...TTTTGCCCAAATCATTTGCTTCAGCTGACAGTGGCGCACAGGCCACCCAGCTAA
49% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 1 transcripts:
ENSMUST00000095715.5
3UTR-3UTR CCA 90 bp CTAAGGTGGTGGCCTCTGACCCACATCAAGCCTCAGACGACAGATGGTACCTGCAGTTCTGGAAACAGCTaGCCCTTAAATAAATATTCT +
Preference number: 2 (lower is better)
Translates to: LRWWPLTHIKPQTTDGTCSSGNS*PLNKYS
Trigger: AGAATATTTATTTAAGGGCCAGCTGTTTCCAGAACT...GCAGGTACCATCTGTCGTCTGAGGCTTGATGTGGGTCAGAGGCCACCACCTTAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000095715.5
3UTR-3UTR CCA 90 bp AAAAATAGTTTCATGTTTCTTACTCAGACTAAATGGCTCTCTGAAGATCCCTCGATCAGTGGCCTTAGCTaGGTGGCCTGTGCGCCACTG +
Preference number: 2 (lower is better)
Translates to: KNSFMFLTQTKWLSEDPSISGLS*VACAPL
Trigger: CAGTGGCGCACAGGCCACCCAGCTAAGGCCACTGAT...CGAGGGATCTTCAGAGAGCCATTTAGTCTGAGTAAGAAACATGAAACTATTTTT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000095715.5
3UTR-3UTR GCA 90 bp AGTAAGGTCTTAACTGTATCTGAAGATGGCTCCAAATTCCAAGACAGAAAGTCTGTGTGGGACTTCTCCTaGTCACTCATCAGGGCAGCT +
Preference number: 2 (lower is better)
Translates to: SKVLTVSEDGSKFQDRKSVWDFS*SLIRAA
Trigger: AGCTGCCCTGATGAGTGAGCAGGAGAAGTCCCACAC...AGACTTTCTGTCTTGGAATTTGGAGCCATCTTCAGATACAGTTAAGACCTTACT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000095715.5
3UTR CAA 90 bp GGGAGGGCTATTCAATGGCTCAGAGCTCCTGTTCGCCAAGTCTCTTaGTCGTCCTTGGAGGTCTTTAAAAATAGTTTCATGTTTCTTACT +
Preference number: 2 (lower is better)
Translates to: GRAIQWLRAPVRQVS*SSLEVFKNSFMFLT
Trigger: AGTAAGAAACATGAAACTATTTTTAAAGACCTCCAAGGACGACAAAGAGACTTGGCGAACAGGAGCTCTGAGCCATTGAATAGCCCTCCC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000095715.5
3UTR-3UTR TCA 90 bp AAAAATAGTTTCATGTTTCTTACTCAGACTAAATGGCTCTCTGAAGATCCCTCGCCCTTCTGGAGGGACTaGAGCAAACCACCCAAAGGT +
Preference number: 2 (lower is better)
Translates to: KNSFMFLTQTKWLSEDPSPFWRD*SKPPKG
Trigger: ACCTTTGGGTGGTTTGCTTCAGTCCCTCCAGAAGGG...CGAGGGATCTTCAGAGAGCCATTTAGTCTGAGTAAGAAACATGAAACTATTTTT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000095715.5
3UTR-3UTR CCA 90 bp AATACCTCAACTAGATCCTGGCAGATCAGCAGAGGTAAGCTTTTCTACTATCAGCTTCTGGTCTTGGGGTaGGAAACAAGAACAGACAAG +
Preference number: 2 (lower is better)
Translates to: NTSTRSWQISRGKLFYYQLLVLG*ETRTDK
Trigger: CTTGTCTGTTCTTGTTTCCCACCCCAAGACCAGAAG...CTGATAGTAGAAAAGCTTACCTCTGCTGATCTGCCAGGATCTAGTTGAGGTATT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000095715.5
3UTR CAA 90 bp TTGCTCATCTGTGGCAATGAATCTAAAGTTGTCCGTAGGCCTAACTaGGAACTATTTTCCTGTTCTTTTCTGCTCCTTTGCAGTCAGGTC +
Preference number: 2 (lower is better)
Translates to: LLICGNESKVVRRPN*ELFSCSFLLLCSQV
Trigger: GACCTGACTGCAAAGGAGCAGAAAAGAACAGGAAAATAGTTCCAAGTTAGGCCTACGGACAACTTTAGATTCATTGCCACAGATGAGCAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000095715.5
3UTR-3UTR CCA 90 bp AATACCTCAACTAGATCCTGGCAGATCAGCAGAGGTAAGCTTTTCTACTATCAGACCACACATGAAGACTaGTCACAGTGGAATCCGATA +
Preference number: 2 (lower is better)
Translates to: NTSTRSWQISRGKLFYYQTTHED*SQWNPI
Trigger: TATCGGATTCCACTGTGACCAGTCTTCATGTGTGGT...CTGATAGTAGAAAAGCTTACCTCTGCTGATCTGCCAGGATCTAGTTGAGGTATT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000095715.5
3UTR-3UTR TCA 90 bp AATACCTCAACTAGATCCTGGCAGATCAGCAGAGGTAAGCTTTTCTACTATCAGGGTCTTAACTGTATCTaGAGATGGCTCCAAATTCCA +
Preference number: 2 (lower is better)
Translates to: NTSTRSWQISRGKLFYYQGLNCI*RWLQIP
Trigger: TGGAATTTGGAGCCATCTTCAGATACAGTTAAGACC...CTGATAGTAGAAAAGCTTACCTCTGCTGATCTGCCAGGATCTAGTTGAGGTATT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000095715.5
3UTR CAA 90 bp ATTCAATGGCTCAGAGCTCCTGTTCGCCAAGTCTCTTTGTCGTCCTaGGAGGTCTTTAAAAATAGTTTCATGTTTCTTACTCAGACTAAA +
Preference number: 2 (lower is better)
Translates to: IQWLRAPVRQVSLSS*EVFKNSFMFLTQTK
Trigger: TTTAGTCTGAGTAAGAAACATGAAACTATTTTTAAAGACCTCCAAGGACGACAAAGAGACTTGGCGAACAGGAGCTCTGAGCCATTGAAT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000095715.5
3UTR GCA 72 bp CCACCCAAAGGTCACAACAGAGTGTGGGACTTCTCCTaGTCACTCATCAGGGCAGCTCCATCGTGGTCACCA +
Preference number: 3 (lower is better)
Translates to: PPKGHNRVWDFS*SLIRAAPSWSP
Trigger: TGGTGACCACGATGGAGCTGCCCTGATGAGTGAGCAGGAGAAGTCCCACACTCTGTTGTGACCTTTGGGTGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000095715.5
3UTR-3UTR CAA 90 bp TACCAAGGCCCTCAGATCACCACTCCGGTTAGATGCCTCTGGCCTCAGGTAAAGCCCGTGGATTTGCTCTaGACCACAGTTCTGGAAACA +
Preference number: 3 (lower is better)
Translates to: YQGPQITTPVRCLWPQVKPVDLL*TTVLET
Trigger: TGTTTCCAGAACTGTGGTCAAGAGCAAATCCACGGG...CTTTACCTGAGGCCAGAGGCATCTAACCGGAGTGGTGATCTGAGGGCCTTGGTA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000095715.5
3UTR CCA 72 bp CCTTTGCAGTCAGGTCTATGTGGGAGGGCTATTCAATaGCTCAGAGCTCCTGTTCGCCAAGTCTCTTTGTCG +
Preference number: 3 (lower is better)
Translates to: PLQSGLCGRAIQ*LRAPVRQVSLS
Trigger: CGACAAAGAGACTTGGCGAACAGGAGCTCTGAGCCATTGAATAGCCCTCCCACATAGACCTGACTGCAAAGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000095715.5
3UTR TCA 72 bp GTCCAGGCTCCAGAGTCACTGATAAATGGCATGGGATaGGGTCATTCACGGCCCATTCAGATAAAGGCAGTC +
Preference number: 3 (lower is better)
Translates to: VQAPESLINGMG*GHSRPIQIKAV
Trigger: GACTGCCTTTATCTGAATGGGCCGTGAATGACCTCATCCCATGCCATTTATCAGTGACTCTGGAGCCTGGAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000095715.5
3UTR GCA 72 bp TACAGGTGTAAGCCACAGTGTCTGGCTCAGTACATCTaGTTCTGTGATCCCAGAAGCCGACTGAAGGGAAAG +
Preference number: 3 (lower is better)
Translates to: YRCKPQCLAQYI*FCDPRSRLKGK
Trigger: CTTTCCCTTCAGTCGGCTTCTGGGATCACAGAAGCAGATGTACTGAGCCAGACACTGTGGCTTACACCTGTA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000095715.5
3UTR CCA 72 bp CCTGTTCTTTTCTGCTCCTTTGCAGTCAGGTCTATGTaGGAGGGCTATTCAATGGCTCAGAGCTCCTGTTCG +
Preference number: 3 (lower is better)
Translates to: PVLFCSFAVRSM*EGYSMAQSSCS
Trigger: CGAACAGGAGCTCTGAGCCATTGAATAGCCCTCCCACATAGACCTGACTGCAAAGGAGCAGAAAAGAACAGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000095715.5
3UTR TCA 72 bp CAAGACAGAAAGTCTGGTTTAGCTGAGAGTTGGCACTaGGCTCAGAAATGCTTCCACACCTTACCGCAGGTC +
Preference number: 3 (lower is better)
Translates to: QDRKSGLAESWH*AQKCFHTLPQV
Trigger: GACCTGCGGTAAGGTGTGGAAGCATTTCTGAGCTCAGTGCCAACTCTCAGCTAAACCAGACTTTCTGTCTTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000095715.5
3UTR CCA 72 bp TTGTTTGGAGACAAAGTCTTACTAAGTGACCCCAGGTaGACCTCAAACTCTTCATGCTCCTACCTCAGCCTC +
Preference number: 3 (lower is better)
Translates to: LFGDKVLLSDPR*TSNSSCSYLSL
Trigger: GAGGCTGAGGTAGGAGCATGAAGAGTTTGAGGTCCACCTGGGGTCACTTAGTAAGACTTTGTCTCCAAACAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000095715.5
3UTR CCA 72 bp TTCTTAGCTATGGAACATGATGGGAGGCAGGAGGGGTaGCTTGTATGTTCCAGTTGGTTTGAGCAGATGAAG +
Preference number: 3 (lower is better)
Translates to: FLAMEHDGRQEG*LVCSSWFEQMK
Trigger: CTTCATCTGCTCAAACCAACTGGAACATACAAGCCACCCCTCCTGCCTCCCATCATGTTCCATAGCTAAGAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000095715.5
3UTR GCA 72 bp CACATGAAGACTGGTCACAGTGGAATCCGATATTCCTaGCTTCTCAGGGGGTGTTATTTGCAGAATGACTGT +
Preference number: 3 (lower is better)
Translates to: HMKTGHSGIRYS*LLRGCYLQNDC
Trigger: ACAGTCATTCTGCAAATAACACCCCCTGAGAAGGCAGGAATATCGGATTCCACTGTGACCAGTCTTCATGTG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000095715.5
3UTR CCA 72 bp TGCTCAGTGTTTAGGGCATCAATCGGGGGCAGGAAGTaGAAACGCGTGGCTTTGAGTAAAATAAACCAACAA +
Preference number: 3 (lower is better)
Translates to: CSVFRASIGGRK*KRVALSKINQQ
Trigger: TTGTTGGTTTATTTTACTCAAAGCCACGCGTTTCCACTTCCTGCCCCCGATTGATGCCCTAAACACTGAGCA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000095715.5
3UTR-3UTR CAA 90 bp AATACCTCAACTAGATCCTGGCAGATCAGCAGAGGTAAGCTTTTCTACTATCAGGAATCACTTCTGGTCTaGGGGTGGGAAACAAGAACA +
Preference number: 3 (lower is better)
Translates to: NTSTRSWQISRGKLFYYQESLLV*GWETRT
Trigger: TGTTCTTGTTTCCCACCCCAAGACCAGAAGTGATTC...CTGATAGTAGAAAAGCTTACCTCTGCTGATCTGCCAGGATCTAGTTGAGGTATT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000095715.5
3UTR CCA 72 bp TCCATTCCCAGCACTACAAATACCTCAACTAGATCCTaGCAGATCAGCAGAGGTAAGCTTTTCTACTATCAG +
Preference number: 3 (lower is better)
Translates to: SIPSTTNTSTRS*QISRGKLFYYQ
Trigger: CTGATAGTAGAAAAGCTTACCTCTGCTGATCTGCCAGGATCTAGTTGAGGTATTTGTAGTGCTGGGAATGGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000095715.5
3UTR TCA 72 bp AAATATTCTGTTGTTTGGAGACAAAGTCTTACTAAGTaGCCCCAGGTGGACCTCAAACTCTTCATGCTCCTA +
Preference number: 3 (lower is better)
Translates to: KYSVVWRQSLTK*PQVDLKLFMLL
Trigger: TAGGAGCATGAAGAGTTTGAGGTCCACCTGGGGTCACTTAGTAAGACTTTGTCTCCAAACAACAGAATATTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000095715.5
3UTR CCA 72 bp CGTGGATTTGCTCTTGACCACAGTTCTGGAAACAGCTaGCCCTTAAATAAATATTCTGTTGTTTGGAGACAA +
Preference number: 3 (lower is better)
Translates to: RGFALDHSSGNS*PLNKYSVVWRQ
Trigger: TTGTCTCCAAACAACAGAATATTTATTTAAGGGCCAGCTGTTTCCAGAACTGTGGTCAAGAGCAAATCCACG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000095715.5
3UTR-3UTR CAA 90 bp AAAAATAGTTTCATGTTTCTTACTCAGACTAAATGGCTCTCTGAAGATCCCTCGCTCAGGGGGTGTTATTaGCAGAATGACTGTAAATTA +
Preference number: 3 (lower is better)
Translates to: KNSFMFLTQTKWLSEDPSLRGCY*QNDCKL
Trigger: TAATTTACAGTCATTCTGCAAATAACACCCCCTGAG...CGAGGGATCTTCAGAGAGCCATTTAGTCTGAGTAAGAAACATGAAACTATTTTT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000095715.5
3UTR CCA 72 bp TTTAAAAATAGTTTCATGTTTCTTACTCAGACTAAATaGCTCTCTGAAGATCCCTCGCCACAAGATTCTGAT +
Preference number: 3 (lower is better)
Translates to: FKNSFMFLTQTK*LSEDPSPQDSD
Trigger: ATCAGAATCTTGTGGCGAGGGATCTTCAGAGAGCCATTTAGTCTGAGTAAGAAACATGAAACTATTTTTAAA
36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000095715.5
3UTR TCA 72 bp TTATGTCAGCCTCGATTTCAACTTACATCATTAAAATaGTCAGAAGAACAACTCGTTCTAAATTCCCATGAC +
Preference number: 3 (lower is better)
Translates to: LCQPRFQLTSLK*SEEQLVLNSHD
Trigger: GTCATGGGAATTTAGAACGAGTTGTTCTTCTGATCATTTTAATGATGTAAGTTGAAATCGAGGCTGACATAA
35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000095715.5
CDS-3UTR CCA 90 bp GGGTGGCCTGTGCGCCACTGTCAGCTGAAGCAAATGATTTGGGCAAAACCTAGTGCTGCGGGGAGGACATaGGGAGAGACGCCGTGCTGG +
Preference number: 4 (lower is better)
Translates to: GWPVRHCQLKQMIWAKPSAAGRT*GETPCW
Trigger: CCAGCACGGCGTCTCTCCCCATGTCCTCCCCGCAGC...ACTAGGTTTTGCCCAAATCATTTGCTTCAGCTGACAGTGGCGCACAGGCCACCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000095715.5
CDS-3UTR GCA 90 bp GGGTGGCCTGTGCGCCACTGTCAGCTGAAGCAAATGATTTGGGCAAAACCTAGTGCAGAGGCTCGCTGCTaGGGGGAGGACATGGGGAGA +
Preference number: 4 (lower is better)
Translates to: GWPVRHCQLKQMIWAKPSAEARC*GEDMGR
Trigger: TCTCCCCATGTCCTCCCCGCAGCAGCGAGCCTCTGC...ACTAGGTTTTGCCCAAATCATTTGCTTCAGCTGACAGTGGCGCACAGGCCACCC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000095715.5
CDS-3UTR GCA 90 bp TTAGCTGGGTGGCCTGTGCGCCACTGTCAGCTGAAGCAAATGATTTGGGCAAAATTGGCAGAGGCTCGCTaGTGCGGGGAGGACATGGGG +
Preference number: 4 (lower is better)
Translates to: LAGWPVRHCQLKQMIWAKLAEAR*CGEDMG
Trigger: CCCCATGTCCTCCCCGCAGCAGCGAGCCTCTGCCAA...TTTTGCCCAAATCATTTGCTTCAGCTGACAGTGGCGCACAGGCCACCCAGCTAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000095715.5
CDS-3UTR CCA 90 bp CCAATCAGTGGCCTTAGCTGGGTGGCCTGTGCGCCACTGTCAGCTGAAGCAAATTCCTCATCTCCAGCATaGAGATCTGTGTGCAGAGGC +
Preference number: 4 (lower is better)
Translates to: PISGLSWVACAPLSAEANSSSPA*RSVCRG
Trigger: GCCTCTGCACACAGATCTCCATGCTGGAGATGAGGA...ATTTGCTTCAGCTGACAGTGGCGCACAGGCCACCCAGCTAAGGCCACTGATTGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000095715.5
CDS-3UTR CCA 90 bp CTAAGGTGGTGGCCTCTGACCCACATCAAGCCTCAGACGACAGATGGTACCTGCTACCCCTTCCTCGATTaGCTTCATCTTGGCAGAGGC +
Preference number: 4 (lower is better)
Translates to: LRWWPLTHIKPQTTDGTCYPFLD*LHLGRG
Trigger: GCCTCTGCCAAGATGAAGCCAATCGAGGAAGGGGTA...GCAGGTACCATCTGTCGTCTGAGGCTTGATGTGGGTCAGAGGCCACCACCTTAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000095715.5
CDS-3UTR CCA 90 bp TACAGGTGTAAGCCACAGTGTCTGGCTCAGTACATCTGCTTCTGTGATCCCAGACACAGCGGTAGAGAGTaGCCCAGACCACATAAAGGG +
Preference number: 4 (lower is better)
Translates to: YRCKPQCLAQYICFCDPRHSGRE*PRPHKG
Trigger: CCCTTTATGTGGTCTGGGCCACTCTCTACCGCTGTG...TCTGGGATCACAGAAGCAGATGTACTGAGCCAGACACTGTGGCTTACACCTGTA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000095715.5
CDS-3UTR TCA 90 bp CCAATCAGTGGCCTTAGCTGGGTGGCCTGTGCGCCACTGTCAGCTGAAGCAAATATACAGAAAAGGCTCTaGCTCCAGAAAGTAAGTCAG +
Preference number: 4 (lower is better)
Translates to: PISGLSWVACAPLSAEANIQKRL*LQKVSQ
Trigger: CTGACTTACTTTCTGGAGTCAGAGCCTTTTCTGTAT...ATTTGCTTCAGCTGACAGTGGCGCACAGGCCACCCAGCTAAGGCCACTGATTGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000095715.5
CDS-3UTR CCA 90 bp TTAGCTGGGTGGCCTGTGCGCCACTGTCAGCTGAAGCAAATGATTTGGGCAAAAAGGTTTTGTCCTCTGTaGCGTAAACCTGGCCCCTTT +
Preference number: 4 (lower is better)
Translates to: LAGWPVRHCQLKQMIWAKRFCPL*RKPGPF
Trigger: AAAGGGGCCAGGTTTACGCCACAGAGGACAAAACCT...TTTTGCCCAAATCATTTGCTTCAGCTGACAGTGGCGCACAGGCCACCCAGCTAA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000095715.5
CDS-3UTR CCA 90 bp GGTCACTCCAACCTTAAAGCCAAGGCTAAGTCACCACTGCCTTCATTGTTTCAACGATTGGCTTCATCTTaGCAGAGGCTCGCTGCTGCG +
Preference number: 4 (lower is better)
Translates to: GHSNLKAKAKSPLPSLFQRLASS*QRLAAA
Trigger: CGCAGCAGCGAGCCTCTGCCAAGATGAAGCCAATCG...TTGAAACAATGAAGGCAGTGGTGACTTAGCCTTGGCTTTAAGGTTGGAGTGACC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000095715.5
CDS-3UTR TCA 90 bp GGGTGGCCTGTGCGCCACTGTCAGCTGAAGCAAATGATTTGGGCAAAACCTAGTAGTAGGGTCATTCAGTaGGTACAGCTTATTTGTAAT +
Preference number: 4 (lower is better)
Translates to: GWPVRHCQLKQMIWAKPSSRVIQ*VQLICN
Trigger: ATTACAAATAAGCTGTACTCACTGAATGACCCTACT...ACTAGGTTTTGCCCAAATCATTTGCTTCAGCTGACAGTGGCGCACAGGCCACCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000095715.5
CDS-3UTR TCA 90 bp TACAGGTGTAAGCCACAGTGTCTGGCTCAGTACATCTGCTTCTGTGATCCCAGAAAAGATGCAAAATATTaGTACCCAAGAACACCGAGT +
Preference number: 4 (lower is better)
Translates to: YRCKPQCLAQYICFCDPRKDAKY*YPRTPS
Trigger: ACTCGGTGTTCTTGGGTATCAATATTTTGCATCTTT...TCTGGGATCACAGAAGCAGATGTACTGAGCCAGACACTGTGGCTTACACCTGTA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000095715.5
CDS-3UTR TCA 90 bp AAAAATAGTTTCATGTTTCTTACTCAGACTAAATGGCTCTCTGAAGATCCCTCGCGTCGCTGGAGCTGGTaGTACTGTTCCTCATCTCCA +
Preference number: 4 (lower is better)
Translates to: KNSFMFLTQTKWLSEDPSRRWSW*YCSSSP
Trigger: TGGAGATGAGGAACAGTATCACCAGCTCCAGCGACG...CGAGGGATCTTCAGAGAGCCATTTAGTCTGAGTAAGAAACATGAAACTATTTTT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000095715.5
CDS-3UTR GCA 90 bp AATACCTCAACTAGATCCTGGCAGATCAGCAGAGGTAAGCTTTTCTACTATCAGCTGATGGACTTTGAGTaGGTCTGGAGACACAAAGAC +
Preference number: 4 (lower is better)
Translates to: NTSTRSWQISRGKLFYYQLMDFE*VWRHKD
Trigger: GTCTTTGTGTCTCCAGACGCACTCAAAGTCCATCAG...CTGATAGTAGAAAAGCTTACCTCTGCTGATCTGCCAGGATCTAGTTGAGGTATT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000095715.5
CDS-3UTR TCA 90 bp AATACCTCAACTAGATCCTGGCAGATCAGCAGAGGTAAGCTTTTCTACTATCAGTTTGTGCATCTGCGTTaGTCTGAATTCGGGAGAATC +
Preference number: 4 (lower is better)
Translates to: NTSTRSWQISRGKLFYYQFVHLR*SEFGRI
Trigger: GATTCTCCCGAATTCAGATCAACGCAGATGCACAAA...CTGATAGTAGAAAAGCTTACCTCTGCTGATCTGCCAGGATCTAGTTGAGGTATT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000095715.5
CDS-3UTR CCA 90 bp AAATTAGCCTTATGTGTGAGTGAGCTAAGTAGTTTCATGGAAATTGAGACTCACGTGCAGAGGCTCATCTaGGGCTCCAGCTTCTTAACT +
Preference number: 4 (lower is better)
Translates to: KLALCVSELSSFMEIETHVQRLI*GSSFLT
Trigger: AGTTAAGAAGCTGGAGCCCCAGATGAGCCTCTGCAC...GTGAGTCTCAATTTCCATGAAACTACTTAGCTCACTCACACATAAGGCTAATTT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000095715.5
3UTR CAA 72 bp GGAATCCGATATTCCTGCCTTCTCAGGGGGTGTTATTaGCAGAATGACTGTAAATTAGCCTTATGTGTGAGT +
Preference number: 4 (lower is better)
Translates to: GIRYSCLLRGCY*QNDCKLALCVS
Trigger: ACTCACACATAAGGCTAATTTACAGTCATTCTGCAAATAACACCCCCTGAGAAGGCAGGAATATCGGATTCC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000095715.5
3UTR CAA 72 bp ATTCAATGGCTCAGAGCTCCTGTTCGCCAAGTCTCTTaGTCGTCCTTGGAGGTCTTTAAAAATAGTTTCATG +
Preference number: 4 (lower is better)
Translates to: IQWLRAPVRQVS*SSLEVFKNSFM
Trigger: CATGAAACTATTTTTAAAGACCTCCAAGGACGACAAAGAGACTTGGCGAACAGGAGCTCTGAGCCATTGAAT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000095715.5
3UTR CAA 72 bp CTCAGAGCTCCTGTTCGCCAAGTCTCTTTGTCGTCCTaGGAGGTCTTTAAAAATAGTTTCATGTTTCTTACT +
Preference number: 4 (lower is better)
Translates to: LRAPVRQVSLSS*EVFKNSFMFLT
Trigger: AGTAAGAAACATGAAACTATTTTTAAAGACCTCCAAGGACGACAAAGAGACTTGGCGAACAGGAGCTCTGAG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000095715.5
CDS-3UTR TCA 90 bp AAATTAGCCTTATGTGTGAGTGAGCTAAGTAGTTTCATGGAAATTGAGACTCACAAGACGATCATCAACTaGGGTTTTGTCCTCTGTGGC +
Preference number: 4 (lower is better)
Translates to: KLALCVSELSSFMEIETHKTIIN*GFVLCG
Trigger: GCCACAGAGGACAAAACCTCAGTTGATGATCGTCTT...GTGAGTCTCAATTTCCATGAAACTACTTAGCTCACTCACACATAAGGCTAATTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000095715.5
CDS-3UTR GCA 90 bp AAAAATAGTTTCATGTTTCTTACTCAGACTAAATGGCTCTCTGAAGATCCCTCGTCGCCTTTGTGCATCTaGGTTGATCTGAATTCGGGA +
Preference number: 4 (lower is better)
Translates to: KNSFMFLTQTKWLSEDPSSPLCI*VDLNSG
Trigger: TCCCGAATTCAGATCAACGCAGATGCACAAAGGCGA...CGAGGGATCTTCAGAGAGCCATTTAGTCTGAGTAAGAAACATGAAACTATTTTT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000095715.5
CDS-3UTR CCA 90 bp AAATTAGCCTTATGTGTGAGTGAGCTAAGTAGTTTCATGGAAATTGAGACTCACGGAGGTGAAGAGTGGTaGGAATTAGCAAACCAACTG +
Preference number: 4 (lower is better)
Translates to: KLALCVSELSSFMEIETHGGEEW*ELANQL
Trigger: CAGTTGGTTTGCTAATTCCCACCACTCTTCACCTCC...GTGAGTCTCAATTTCCATGAAACTACTTAGCTCACTCACACATAAGGCTAATTT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000095715.5
CDS-3UTR GCA 90 bp AAATTAGCCTTATGTGTGAGTGAGCTAAGTAGTTTCATGGAAATTGAGACTCACCCTGCAGTTATCATCTaGAACAATGGTGACCTGGAA +
Preference number: 4 (lower is better)
Translates to: KLALCVSELSSFMEIETHPAVII*NNGDLE
Trigger: TTCCAGGTCACCATTGTTGCAGATGATAACTGCAGG...GTGAGTCTCAATTTCCATGAAACTACTTAGCTCACTCACACATAAGGCTAATTT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000095715.5
CDS-3UTR GCA 90 bp AGTAAGGTCTTAACTGTATCTGAAGATGGCTCCAAATTCCAAGACAGAAAGTCTACCAGCATAAGAACCTaGAGTTATCATCTGCAACAA +
Preference number: 4 (lower is better)
Translates to: SKVLTVSEDGSKFQDRKSTSIRT*SYHLQQ
Trigger: TTGTTGCAGATGATAACTGCAGGTTCTTATGCTGGT...AGACTTTCTGTCTTGGAATTTGGAGCCATCTTCAGATACAGTTAAGACCTTACT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000095715.5
CDS-3UTR CCA 90 bp AAATTAGCCTTATGTGTGAGTGAGCTAAGTAGTTTCATGGAAATTGAGACTCACTATGGAGGTGAAGAGTaGTGGGAATTAGCAAACCAA +
Preference number: 4 (lower is better)
Translates to: KLALCVSELSSFMEIETHYGGEE*WELANQ
Trigger: TTGGTTTGCTAATTCCCACCACTCTTCACCTCCATA...GTGAGTCTCAATTTCCATGAAACTACTTAGCTCACTCACACATAAGGCTAATTT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000095715.5
3UTR CAA 72 bp AAATACACTTGCTCATCTGTGGCAATGAATCTAAAGTaGTCCGTAGGCCTAACTTGGAACTATTTTCCTGTT +
Preference number: 4 (lower is better)
Translates to: KYTCSSVAMNLK*SVGLTWNYFPV
Trigger: AACAGGAAAATAGTTCCAAGTTAGGCCTACGGACAACTTTAGATTCATTGCCACAGATGAGCAAGTGTATTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000095715.5
CDS-3UTR GCA 90 bp AAAAATAGTTTCATGTTTCTTACTCAGACTAAATGGCTCTCTGAAGATCCCTCGTGCAAAGCAAACGTTTaGTACATGAAAAACCAGATG +
Preference number: 4 (lower is better)
Translates to: KNSFMFLTQTKWLSEDPSCKANV*YMKNQM
Trigger: CATCTGGTTTTTCATGTAGCAAACGTTTGCTTTGCA...CGAGGGATCTTCAGAGAGCCATTTAGTCTGAGTAAGAAACATGAAACTATTTTT
37% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000095715.5
CDS CCA 90 bp CGATTGGCTTCATCTTGGCAGAGGCTCGCTGCTGCGGGGAGGACATaGGGAGAGACGCCGTGCTGGAGGAGCCCCGCAGAAAGTGGTGCA +
Preference number: 5 (lower is better)
Translates to: RLASSWQRLAAAGRT*GETPCWRSPAESGA
Trigger: TGCACCACTTTCTGCGGGGCTCCTCCAGCACGGCGTCTCTCCCCATGTCCTCCCCGCAGCAGCGAGCCTCTGCCAAGATGAAGCCAATCG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000095715.5
CDS TCA 90 bp CCCGCAGAAAGTGGTGCAGGCCGTCCTCGCCGTCGCTGGAGCTGGTaGTACTGTTCCTCATCTCCAGCATGGAGATCTGTGTGCAGAGGC +
Preference number: 5 (lower is better)
Translates to: PAESGAGRPRRRWSW*YCSSSPAWRSVCRG
Trigger: GCCTCTGCACACAGATCTCCATGCTGGAGATGAGGAACAGTATCACCAGCTCCAGCGACGGCGAGGACGGCCTGCACCACTTTCTGCGGG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000095715.5
CDS-3UTR CAA 90 bp CTAAGGTGGTGGCCTCTGACCCACATCAAGCCTCAGACGACAGATGGTACCTGCTCGATTGGCTTCATCTaGGCAGAGGCTCGCTGCTGC +
Preference number: 5 (lower is better)
Translates to: LRWWPLTHIKPQTTDGTCSIGFI*AEARCC
Trigger: GCAGCAGCGAGCCTCTGCCAAGATGAAGCCAATCGA...GCAGGTACCATCTGTCGTCTGAGGCTTGATGTGGGTCAGAGGCCACCACCTTAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000095715.5
CDS CCA 90 bp TGGAGACACAAAGACCTCATCGTCATCTTCTACCCCTTCCTCGATTaGCTTCATCTTGGCAGAGGCTCGCTGCTGCGGGGAGGACATGGG +
Preference number: 5 (lower is better)
Translates to: WRHKDLIVIFYPFLD*LHLGRGSLLRGGHG
Trigger: CCCATGTCCTCCCCGCAGCAGCGAGCCTCTGCCAAGATGAAGCCAATCGAGGAAGGGGTAGAAGATGACGATGAGGTCTTTGTGTCTCCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000095715.5
CDS-3UTR CAA 90 bp TACCAAGGCCCTCAGATCACCACTCCGGTTAGATGCCTCTGGCCTCAGGTAAAGTGGAATTTTTCGCCTTaGTGCATCTGCGTTGATCTG +
Preference number: 5 (lower is better)
Translates to: YQGPQITTPVRCLWPQVKWNFSP*CICVDL
Trigger: CAGATCAACGCAGATGCACAAAGGCGAAAAATTCCA...CTTTACCTGAGGCCAGAGGCATCTAACCGGAGTGGTGATCTGAGGGCCTTGGTA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000095715.5
CDS-3UTR CAA 90 bp CTAAGGTGGTGGCCTCTGACCCACATCAAGCCTCAGACGACAGATGGTACCTGCCTGCAAAGCAAACGTTaGCTACATGAAAAACCAGAT +
Preference number: 5 (lower is better)
Translates to: LRWWPLTHIKPQTTDGTCLQSKR*LHEKPD
Trigger: ATCTGGTTTTTCATGTAGCAAACGTTTGCTTTGCAG...GCAGGTACCATCTGTCGTCTGAGGCTTGATGTGGGTCAGAGGCCACCACCTTAG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000095715.5
CDS-3UTR CAA 90 bp TGTAAGCCACAGTGTCTGGCTCAGTACATCTGCTTCTGTGATCCCAGAAGCCGAAAGTCAGTCTTTCTCTaGACCAGCATAAGAACCTGC +
Preference number: 5 (lower is better)
Translates to: CKPQCLAQYICFCDPRSRKSVFL*TSIRTC
Trigger: GCAGGTTCTTATGCTGGTCAAGAGAAAGACTGACTT...TCGGCTTCTGGGATCACAGAAGCAGATGTACTGAGCCAGACACTGTGGCTTACA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000095715.5
CDS CCA 90 bp CTGTTCCTCATCTCCAGCATGGAGATCTGTGTGCAGAGGCTCATCTaGGGCTCCAGCTTCTTAACTTTCTTATCATTTAAAGTAGGGTCA +
Preference number: 5 (lower is better)
Translates to: LFLISSMEICVQRLI*GSSFLTFLSFKVGS
Trigger: TGACCCTACTTTAAATGATAAGAAAGTTAAGAAGCTGGAGCCCCAGATGAGCCTCTGCACACAGATCTCCATGCTGGAGATGAGGAACAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000095715.5
CDS TCA 90 bp TGCAACAATGGTGACCTGGAATTTTTCGCCTTTGTGCATCTGCGTTaGTCTGAATTCGGGAGAATCTATAAAGGCACACGGGTAAATGTT +
Preference number: 5 (lower is better)
Translates to: CNNGDLEFFAFVHLR*SEFGRIYKGTRVNV
Trigger: AACATTTACCCGTGTGCCTTTATAGATTCTCCCGAATTCAGATCAACGCAGATGCACAAAGGCGAAAAATTCCAGGTCACCATTGTTGCA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000095715.5
CDS-3UTR CAA 90 bp AGTAAGGTCTTAACTGTATCTGAAGATGGCTCCAAATTCCAAGACAGAAAGTCTGAAAGATGCAAAATATaGATACCCAAGAACACCGAG +
Preference number: 5 (lower is better)
Translates to: SKVLTVSEDGSKFQDRKSERCKI*IPKNTE
Trigger: CTCGGTGTTCTTGGGTATCAATATTTTGCATCTTTC...AGACTTTCTGTCTTGGAATTTGGAGCCATCTTCAGATACAGTTAAGACCTTACT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000095715.5
CDS-3UTR CAA 90 bp AAATTAGCCTTATGTGTGAGTGAGCTAAGTAGTTTCATGGAAATTGAGACTCACAGCTCCTTTTCAATTTaGACCGGTCTTTTCTTGTAC +
Preference number: 5 (lower is better)
Translates to: KLALCVSELSSFMEIETHSSFSI*TGLFLY
Trigger: GTACAAGAAAAGACCGGTCAAAATTGAAAAGGAGCT...GTGAGTCTCAATTTCCATGAAACTACTTAGCTCACTCACACATAAGGCTAATTT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000095715.5
CDS GCA 72 bp AGAGACGCCGTGCTGGAGGAGCCCCGCAGAAAGTGGTaGAGGCCGTCCTCGCCGTCGCTGGAGCTGGTGATA +
Preference number: 6 (lower is better)
Translates to: RDAVLEEPRRKW*RPSSPSLELVI
Trigger: TATCACCAGCTCCAGCGACGGCGAGGACGGCCTGCACCACTTTCTGCGGGGCTCCTCCAGCACGGCGTCTCT
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000095715.5
CDS CCA 72 bp TCATCTTGGCAGAGGCTCGCTGCTGCGGGGAGGACATaGGGAGAGACGCCGTGCTGGAGGAGCCCCGCAGAA +
Preference number: 6 (lower is better)
Translates to: SSWQRLAAAGRT*GETPCWRSPAE
Trigger: TTCTGCGGGGCTCCTCCAGCACGGCGTCTCTCCCCATGTCCTCCCCGCAGCAGCGAGCCTCTGCCAAGATGA
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000095715.5
CDS GCA 72 bp CCTTCCTCGATTGGCTTCATCTTGGCAGAGGCTCGCTaGTGCGGGGAGGACATGGGGAGAGACGCCGTGCTG +
Preference number: 6 (lower is better)
Translates to: PSSIGFILAEAR*CGEDMGRDAVL
Trigger: CAGCACGGCGTCTCTCCCCATGTCCTCCCCGCAGCAGCGAGCCTCTGCCAAGATGAAGCCAATCGAGGAAGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000095715.5
CDS TCA 72 bp AGTGGTGCAGGCCGTCCTCGCCGTCGCTGGAGCTGGTaGTACTGTTCCTCATCTCCAGCATGGAGATCTGTG +
Preference number: 6 (lower is better)
Translates to: SGAGRPRRRWSW*YCSSSPAWRSV
Trigger: CACAGATCTCCATGCTGGAGATGAGGAACAGTATCACCAGCTCCAGCGACGGCGAGGACGGCCTGCACCACT
60% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000095715.5
CDS CAA 72 bp TCGTCATCTTCTACCCCTTCCTCGATTGGCTTCATCTaGGCAGAGGCTCGCTGCTGCGGGGAGGACATGGGG +
Preference number: 6 (lower is better)
Translates to: SSSSTPSSIGFI*AEARCCGEDMG
Trigger: CCCCATGTCCTCCCCGCAGCAGCGAGCCTCTGCCAAGATGAAGCCAATCGAGGAAGGGGTAGAAGATGACGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000095715.5
CDS CAA 90 bp CTGGAGACACAAAGACCTCATCGTCATCTTCTACCCCTTCCTCGATaGGCTTCATCTTGGCAGAGGCTCGCTGCTGCGGGGAGGACATGG +
Preference number: 6 (lower is better)
Translates to: LETQRPHRHLLPLPR*ASSWQRLAAAGRTW
Trigger: CCATGTCCTCCCCGCAGCAGCGAGCCTCTGCCAAGATGAAGCCAATCGAGGAAGGGGTAGAAGATGACGATGAGGTCTTTGTGTCTCCAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000095715.5
CDS CCA 72 bp AAAGACCTCATCGTCATCTTCTACCCCTTCCTCGATTaGCTTCATCTTGGCAGAGGCTCGCTGCTGCGGGGA +
Preference number: 6 (lower is better)
Translates to: KDLIVIFYPFLD*LHLGRGSLLRG
Trigger: TCCCCGCAGCAGCGAGCCTCTGCCAAGATGAAGCCAATCGAGGAAGGGGTAGAAGATGACGATGAGGTCTTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000095715.5
CDS CCA 72 bp TCCAGATCATCACATCCAAGGCACAGCGGTAGAGAGTaGCCCAGACCACATAAAGGGTACATCCTAGAGACA +
Preference number: 6 (lower is better)
Translates to: SRSSHPRHSGRE*PRPHKGYILET
Trigger: TGTCTCTAGGATGTACCCTTTATGTGGTCTGGGCCACTCTCTACCGCTGTGCCTTGGATGTGATGATCTGGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000095715.5
CDS TCA 72 bp GGTGACCTGGAATTTTTCGCCTTTGTGCATCTGCGTTaGTCTGAATTCGGGAGAATCTATAAAGGCACACGG +
Preference number: 6 (lower is better)
Translates to: GDLEFFAFVHLR*SEFGRIYKGTR
Trigger: CCGTGTGCCTTTATAGATTCTCCCGAATTCAGATCAACGCAGATGCACAAAGGCGAAAAATTCCAGGTCACC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000095715.5
CDS CAA 90 bp GGTGAAGAGTGGTGGGAATTAGCAAACCAACTGCAAAGCAAACGTTaGCTACATGAAAAACCAGATGGTGAATCTCTCGCCAGTTCTCAC +
Preference number: 6 (lower is better)
Translates to: GEEWWELANQLQSKR*LHEKPDGESLASSH
Trigger: GTGAGAACTGGCGAGAGATTCACCATCTGGTTTTTCATGTAGCAAACGTTTGCTTTGCAGTTGGTTTGCTAATTCCCACCACTCTTCACC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000095715.5
CDS CCA 72 bp ATCTCCAGCATGGAGATCTGTGTGCAGAGGCTCATCTaGGGCTCCAGCTTCTTAACTTTCTTATCATTTAAA +
Preference number: 6 (lower is better)
Translates to: ISSMEICVQRLI*GSSFLTFLSFK
Trigger: TTTAAATGATAAGAAAGTTAAGAAGCTGGAGCCCCAGATGAGCCTCTGCACACAGATCTCCATGCTGGAGAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000095715.5
CDS CAA 72 bp TGGTGGGAATTAGCAAACCAACTGCAAAGCAAACGTTaGCTACATGAAAAACCAGATGGTGAATCTCTCGCC +
Preference number: 6 (lower is better)
Translates to: WWELANQLQSKR*LHEKPDGESLA
Trigger: GGCGAGAGATTCACCATCTGGTTTTTCATGTAGCAAACGTTTGCTTTGCAGTTGGTTTGCTAATTCCCACCA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000095715.5
CDS CAA 72 bp TCATCTGCAACAATGGTGACCTGGAATTTTTCGCCTTaGTGCATCTGCGTTGATCTGAATTCGGGAGAATCT +
Preference number: 6 (lower is better)
Translates to: SSATMVTWNFSP*CICVDLNSGES
Trigger: AGATTCTCCCGAATTCAGATCAACGCAGATGCACAAAGGCGAAAAATTCCAGGTCACCATTGTTGCAGATGA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000095715.5
CDS GCA 72 bp ACAATGGTGACCTGGAATTTTTCGCCTTTGTGCATCTaGGTTGATCTGAATTCGGGAGAATCTATAAAGGCA +
Preference number: 6 (lower is better)
Translates to: TMVTWNFSPLCI*VDLNSGESIKA
Trigger: TGCCTTTATAGATTCTCCCGAATTCAGATCAACGCAGATGCACAAAGGCGAAAAATTCCAGGTCACCATTGT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000095715.5
CDS GCA 72 bp TCTGCAACAATGGTGACCTGGAATTTTTCGCCTTTGTaGATCTGCGTTGATCTGAATTCGGGAGAATCTATA +
Preference number: 6 (lower is better)
Translates to: SATMVTWNFSPL*ICVDLNSGESI
Trigger: TATAGATTCTCCCGAATTCAGATCAACGCAGATGCACAAAGGCGAAAAATTCCAGGTCACCATTGTTGCAGA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000095715.5