Pregenerated sensors for BUB1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000027379Ensembl transcript IDs: ENSMUST00000028858.9, ENSMUST00020183811.1
Found 46 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS GCA 90 bp | CGCATGGTCAATGCCTGTGCATTTAAAAGCCTCAAGGCCGAACACTaGTTCCTGGGTGAACAAACCACCTGTGGCAGGCTGACTAGGACA | + |
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Preference number: 5 (lower is better) Translates to: RMVNACAFKSLKAEH*FLGEQTTCGRLTRT Trigger: TGTCCTAGTCAGCCTGCCACAGGTGGTTTGTTCACCCAGGAAGCAGTGTTCGGCCTTGAGGCTTTTAAATGCACAGGCATTGACCATGCG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000028858.9 ENSMUST00020183811.1 |
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| CDS CCA 90 bp | AAGCTTGGAGCATTGACATTTCCAAGTGTCTGCACGCATTCAACTTaGAGCCCAGCATTGGCATCGGATAGGTCTTCCACTGTCGCATGG | + |
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Preference number: 5 (lower is better) Translates to: KLGALTFPSVCTHST*SPALASDRSSTVAW Trigger: CCATGCGACAGTGGAAGACCTATCCGATGCCAATGCTGGGCTCCAAGTTGAATGCGTGCAGACACTTGGAAATGTCAATGCTCCAAGCTT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028858.9 ENSMUST00020183811.1 |
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| CDS TCA 90 bp | GTTCTTCCTGTGGTTTCTCTCCTGAACTCTCTGAGGTCTGATGACTaGTGGATGAAAGACTTGGACCCCTCAATTCCTGCTGGGAGCAAG | + |
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Preference number: 5 (lower is better) Translates to: VLPVVSLLNSLRSDD*WMKDLDPSIPAGSK Trigger: CTTGCTCCCAGCAGGAATTGAGGGGTCCAAGTCTTTCATCCATCAGTCATCAGACCTCAGAGAGTTCAGGAGAGAAACCACAGGAAGAAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000028858.9 ENSMUST00020183811.1 |
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| CDS GCA 90 bp | GGGTTCTCAACAGTAAAGCTTGGAGCATTGACATTTCCAAGTGTCTaGACGCATTCAACTTGGAGCCCAGCATTGGCATCGGATAGGTCT | + |
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Preference number: 5 (lower is better) Translates to: GFSTVKLGALTFPSV*THSTWSPALASDRS Trigger: AGACCTATCCGATGCCAATGCTGGGCTCCAAGTTGAATGCGTGCAGACACTTGGAAATGTCAATGCTCCAAGCTTTACTGTTGAGAACCC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028858.9 ENSMUST00020183811.1 |
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| CDS GCA 90 bp | AACCTAATGCTTCCTTGGTGTGGACAGTTGGTGATGGCTGCACTTTaGATGGTGTTCCTTGAACCATTCCCAATGATGTGTTTGGAGTTG | + |
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Preference number: 5 (lower is better) Translates to: NLMLPWCGQLVMAAL*MVFLEPFPMMCLEL Trigger: CAACTCCAAACACATCATTGGGAATGGTTCAAGGAACACCATGCAAAGTGCAGCCATCACCAACTGTCCACACCAAGGAAGCATTAGGTT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028858.9 ENSMUST00020183811.1 |
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| CDS TCA 90 bp | GGCCATTCATCTTTATCATCAGAAATGTCAGGAAGTGTTGGAGCCTaGAACATGTCCATGATGAAACCTAATGCTTCCTTGGTGTGGACA | + |
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Preference number: 5 (lower is better) Translates to: GHSSLSSEMSGSVGA*NMSMMKPNASLVWT Trigger: TGTCCACACCAAGGAAGCATTAGGTTTCATCATGGACATGTTTCAGGCTCCAACACTTCCTGACATTTCTGATGATAAAGATGAATGGCC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028858.9 ENSMUST00020183811.1 |
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| CDS CCA 90 bp | TGTACTAAATCTGCTGGAAATTTGTGGAATGGTGTAGACGAAAGTTaGGCAGCAGATGTAAAGTCTCCTATACTTTTAGGACTGGGAGCT | + |
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Preference number: 5 (lower is better) Translates to: CTKSAGNLWNGVDES*AADVKSPILLGLGA Trigger: AGCTCCCAGTCCTAAAAGTATAGGAGACTTTACATCTGCTGCCCAACTTTCGTCTACACCATTCCACAAATTTCCAGCAGATTTAGTACA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000028858.9 ENSMUST00020183811.1 |
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| CDS TCA 90 bp | CCTGTAAATACAGTTCCTTTAGGGAAAAGTTTCATATCTATACTCTaGCCCAGGTCAATCAATGCCAAGCCGGTAGCTAAGTCTTCATCA | + |
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Preference number: 5 (lower is better) Translates to: PVNTVPLGKSFISIL*PRSINAKPVAKSSS Trigger: TGATGAAGACTTAGCTACCGGCTTGGCATTGATTGACCTGGGTCAGAGTATAGATATGAAACTTTTCCCTAAAGGAACTGTATTTACAGG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000028858.9 ENSMUST00020183811.1 |
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| CDS TCA 90 bp | TCACATAGACCAGCAAAGAACCCAATTGATATTCTGTCTTGGTCTTaGTGGCTGGAAGTTTACTCTGCCACTCAAAAGTATTTGAATAGG | + |
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Preference number: 5 (lower is better) Translates to: SHRPAKNPIDILSWS*WLEVYSATQKYLNR Trigger: CCTATTCAAATACTTTTGAGTGGCAGAGTAAACTTCCAGCCATCAAGACCAAGACAGAATATCAATTGGGTTCTTTGCTGGTCTATGTGA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000028858.9 ENSMUST00020183811.1 |
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| CDS TCA 90 bp | CAGCGAATACCACATACTGTTGAATCATCCATAAACTCATCAGTGTaGGGCATTTCATTTGATCTCGAGGAATATTTACTGAGAGATCGT | + |
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Preference number: 5 (lower is better) Translates to: QRIPHTVESSINSSV*GISFDLEEYLLRDR Trigger: ACGATCTCTCAGTAAATATTCCTCGAGATCAAATGAAATGCCTCACACTGATGAGTTTATGGATGATTCAACAGTATGTGGTATTCGCTG 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028858.9 ENSMUST00020183811.1 |
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| CDS CCA 90 bp | AACTTTATTTGTTTCACACACTTCTTTTGTTTCTGGTCCACACTGTaGCATGAATTCATGAACACTTTGATTCACACATCTGGAGTCTGT | + |
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Preference number: 5 (lower is better) Translates to: NFICFTHFFCFWSTL*HEFMNTLIHTSGVC Trigger: ACAGACTCCAGATGTGTGAATCAAAGTGTTCATGAATTCATGCCACAGTGTGGACCAGAAACAAAAGAAGTGTGTGAAACAAATAAAGTT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000028858.9 ENSMUST00020183811.1 |
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| CDS CCA 90 bp | ATTAATGCTGGCAACTTTATTTGTTTCACACACTTCTTTTGTTTCTaGTCCACACTGTGGCATGAATTCATGAACACTTTGATTCACACA | + |
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Preference number: 5 (lower is better) Translates to: INAGNFICFTHFFCF*STLWHEFMNTLIHT Trigger: TGTGTGAATCAAAGTGTTCATGAATTCATGCCACAGTGTGGACCAGAAACAAAAGAAGTGTGTGAAACAAATAAAGTTGCCAGCATTAAT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000028858.9 ENSMUST00020183811.1 |
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| CDS GCA 72 bp | GCACTGGCATGCTGCAGCTCTCCCTGGGCTTCCAGATaGCCTGCCCAGGACATGTATATATATGATGACTTG | + |
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Preference number: 6 (lower is better) Translates to: ALACCSSPWASR*PAQDMYIYDDL Trigger: CAAGTCATCATATATATACATGTCCTGGGCAGGGCATCTGGAAGCCCAGGGAGAGCTGCAGCATGCCAGTGC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028858.9 ENSMUST00020183811.1 |
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| CDS CAA 72 bp | CCAAGTGTCTGCACGCATTCAACTTGGAGCCCAGCATaGGCATCGGATAGGTCTTCCACTGTCGCATGGTCA | + |
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Preference number: 6 (lower is better) Translates to: PSVCTHSTWSPA*ASDRSSTVAWS Trigger: TGACCATGCGACAGTGGAAGACCTATCCGATGCCAATGCTGGGCTCCAAGTTGAATGCGTGCAGACACTTGG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028858.9 ENSMUST00020183811.1 |
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| CDS GCA 72 bp | AATGCCTGTGCATTTAAAAGCCTCAAGGCCGAACACTaGTTCCTGGGTGAACAAACCACCTGTGGCAGGCTG | + |
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Preference number: 6 (lower is better) Translates to: NACAFKSLKAEH*FLGEQTTCGRL Trigger: CAGCCTGCCACAGGTGGTTTGTTCACCCAGGAAGCAGTGTTCGGCCTTGAGGCTTTTAAATGCACAGGCATT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000028858.9 ENSMUST00020183811.1 |
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| CDS CCA 72 bp | CCAGCATTGGCATCGGATAGGTCTTCCACTGTCGCATaGTCAATGCCTGTGCATTTAAAAGCCTCAAGGCCG | + |
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Preference number: 6 (lower is better) Translates to: PALASDRSSTVA*SMPVHLKASRP Trigger: CGGCCTTGAGGCTTTTAAATGCACAGGCATTGACCATGCGACAGTGGAAGACCTATCCGATGCCAATGCTGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000028858.9 ENSMUST00020183811.1 |
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| CDS CCA 72 bp | CAAGTGTCTGCACGCATTCAACTTGGAGCCCAGCATTaGCATCGGATAGGTCTTCCACTGTCGCATGGTCAA | + |
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Preference number: 6 (lower is better) Translates to: QVSARIQLGAQH*HRIGLPLSHGQ Trigger: TTGACCATGCGACAGTGGAAGACCTATCCGATGCCAATGCTGGGCTCCAAGTTGAATGCGTGCAGACACTTG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028858.9 ENSMUST00020183811.1 |
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| CDS CAA 90 bp | TTGACATTTCCAAGTGTCTGCACGCATTCAACTTGGAGCCCAGCATaGGCATCGGATAGGTCTTCCACTGTCGCATGGTCAATGCCTGTG | + |
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Preference number: 6 (lower is better) Translates to: LTFPSVCTHSTWSPA*ASDRSSTVAWSMPV Trigger: CACAGGCATTGACCATGCGACAGTGGAAGACCTATCCGATGCCAATGCTGGGCTCCAAGTTGAATGCGTGCAGACACTTGGAAATGTCAA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028858.9 ENSMUST00020183811.1 |
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| CDS CCA 72 bp | GCATTGACATTTCCAAGTGTCTGCACGCATTCAACTTaGAGCCCAGCATTGGCATCGGATAGGTCTTCCACT | + |
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Preference number: 6 (lower is better) Translates to: ALTFPSVCTHST*SPALASDRSST Trigger: AGTGGAAGACCTATCCGATGCCAATGCTGGGCTCCAAGTTGAATGCGTGCAGACACTTGGAAATGTCAATGC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028858.9 ENSMUST00020183811.1 |
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| CDS TCA 72 bp | GTGGTTTCTCTCCTGAACTCTCTGAGGTCTGATGACTaGTGGATGAAAGACTTGGACCCCTCAATTCCTGCT | + |
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Preference number: 6 (lower is better) Translates to: VVSLLNSLRSDD*WMKDLDPSIPA Trigger: AGCAGGAATTGAGGGGTCCAAGTCTTTCATCCATCAGTCATCAGACCTCAGAGAGTTCAGGAGAGAAACCAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000028858.9 ENSMUST00020183811.1 |
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| CDS TCA 72 bp | ACTGCTTCCTGGGTGAACAAACCACCTGTGGCAGGCTaGCTAGGACAGGGTAAAGATGCTGAAATTTTCTCT | + |
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Preference number: 6 (lower is better) Translates to: TASWVNKPPVAG*LGQGKDAEIFS Trigger: AGAGAAAATTTCAGCATCTTTACCCTGTCCTAGTCAGCCTGCCACAGGTGGTTTGTTCACCCAGGAAGCAGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000028858.9 ENSMUST00020183811.1 |
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| CDS GCA 72 bp | CTTCCTTGGTGTGGACAGTTGGTGATGGCTGCACTTTaGATGGTGTTCCTTGAACCATTCCCAATGATGTGT | + |
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Preference number: 6 (lower is better) Translates to: LPWCGQLVMAAL*MVFLEPFPMMC Trigger: ACACATCATTGGGAATGGTTCAAGGAACACCATGCAAAGTGCAGCCATCACCAACTGTCCACACCAAGGAAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028858.9 ENSMUST00020183811.1 |
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| CDS GCA 72 bp | ACAGTAAAGCTTGGAGCATTGACATTTCCAAGTGTCTaGACGCATTCAACTTGGAGCCCAGCATTGGCATCG | + |
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Preference number: 6 (lower is better) Translates to: TVKLGALTFPSV*THSTWSPALAS Trigger: CGATGCCAATGCTGGGCTCCAAGTTGAATGCGTGCAGACACTTGGAAATGTCAATGCTCCAAGCTTTACTGT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028858.9 ENSMUST00020183811.1 |
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| CDS TCA 72 bp | ATGAACACTTTGATTCACACATCTGGAGTCTGTCAATaGCTGGCCACTTACAGGAACAGGAAGAGCTGGCAG | + |
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Preference number: 6 (lower is better) Translates to: MNTLIHTSGVCQ*LATYRNRKSWQ Trigger: CTGCCAGCTCTTCCTGTTCCTGTAAGTGGCCAGTCATTGACAGACTCCAGATGTGTGAATCAAAGTGTTCAT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028858.9 ENSMUST00020183811.1 |
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| CDS CAA 72 bp | TCATCCCATGGGTTCTCAACAGTAAAGCTTGGAGCATaGACATTTCCAAGTGTCTGCACGCATTCAACTTGG | + |
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Preference number: 6 (lower is better) Translates to: SSHGFSTVKLGA*TFPSVCTHSTW Trigger: CCAAGTTGAATGCGTGCAGACACTTGGAAATGTCAATGCTCCAAGCTTTACTGTTGAGAACCCATGGGATGA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028858.9 ENSMUST00020183811.1 |
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| CDS CCA 72 bp | CTGATGGATGAAAGACTTGGACCCCTCAATTCCTGCTaGGAGCAAGTATTTTGTCCAACACATACTAGACTA | + |
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Preference number: 6 (lower is better) Translates to: LMDERLGPLNSC*EQVFCPTHTRL Trigger: TAGTCTAGTATGTGTTGGACAAAATACTTGCTCCCAGCAGGAATTGAGGGGTCCAAGTCTTTCATCCATCAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000028858.9 ENSMUST00020183811.1 |
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| CDS CCA 72 bp | TGCAGCAACTCCAAAGTAATCAATCTGGTAGTTCCATaGCTTGTTACTGAGCATCTCAGGACACTGAAAACC | + |
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Preference number: 6 (lower is better) Translates to: CSNSKVINLVVP*LVTEHLRTLKT Trigger: GGTTTTCAGTGTCCTGAGATGCTCAGTAACAAGCCATGGAACTACCAGATTGATTACTTTGGAGTTGCTGCA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000028858.9 ENSMUST00020183811.1 |
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| CDS CAA 72 bp | TTCCCATTCTCCAAGTGGGTCATTACCCGTGTAGCTTaGCATATGGGCTTCAAACATGCGAAAGACATTTTC | + |
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Preference number: 6 (lower is better) Translates to: FPFSKWVITRVA*HMGFKHAKDIF Trigger: GAAAATGTCTTTCGCATGTTTGAAGCCCATATGCAAAGCTACACGGGTAATGACCCACTTGGAGAATGGGAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000028858.9 ENSMUST00020183811.1 |
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| CDS CAA 72 bp | TTGGGTGCCACAGATGAGCTGACAGAGCATTCTGACTaGGAAATCATGATCACCCTTTGTTCCATATTAGAC | + |
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Preference number: 6 (lower is better) Translates to: LGATDELTEHSD*EIMITLCSILD Trigger: GTCTAATATGGAACAAAGGGTGATCATGATTTCCAAGTCAGAATGCTCTGTCAGCTCATCTGTGGCACCCAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00020183811.1 |
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| CDS TCA 72 bp | ACAGTTCCTTTAGGGAAAAGTTTCATATCTATACTCTaGCCCAGGTCAATCAATGCCAAGCCGGTAGCTAAG | + |
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Preference number: 6 (lower is better) Translates to: TVPLGKSFISIL*PRSINAKPVAK Trigger: CTTAGCTACCGGCTTGGCATTGATTGACCTGGGTCAGAGTATAGATATGAAACTTTTCCCTAAAGGAACTGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000028858.9 ENSMUST00020183811.1 |
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| CDS CAA 72 bp | TTGGGTGCCACAGATGAGCTGACAGAGCATTCTGACTaGGAAATCATGATCACCCTTTGTTCCCTAATATTA | + |
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Preference number: 6 (lower is better) Translates to: LGATDELTEHSD*EIMITLCSLIL Trigger: TAATATTAGGGAACAAAGGGTGATCATGATTTCCAAGTCAGAATGCTCTGTCAGCTCATCTGTGGCACCCAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028858.9 |
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| CDS TCA 72 bp | CCAGCAAAGAACCCAATTGATATTCTGTCTTGGTCTTaGTGGCTGGAAGTTTACTCTGCCACTCAAAAGTAT | + |
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Preference number: 6 (lower is better) Translates to: PAKNPIDILSWS*WLEVYSATQKY Trigger: ATACTTTTGAGTGGCAGAGTAAACTTCCAGCCATCAAGACCAAGACAGAATATCAATTGGGTTCTTTGCTGG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000028858.9 ENSMUST00020183811.1 |
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| CDS TCA 72 bp | TGTCCTAGTATGAAGTTATCTGGCTTAATGTCTCCATaGATGATTTCGCAGCTGTGGACTTGTTCAACCATG | + |
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Preference number: 6 (lower is better) Translates to: CPSMKLSGLMSP*MISQLWTCSTM Trigger: CATGGTTGAACAAGTCCACAGCTGCGAAATCATTCATGGAGACATTAAGCCAGATAACTTCATACTAGGACA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028858.9 ENSMUST00020183811.1 |
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| CDS CCA 72 bp | TCTTCTGGAATCTGTACTAAATCTGCTGGAAATTTGTaGAATGGTGTAGACGAAAGTTGGGCAGCAGATGTA | + |
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Preference number: 6 (lower is better) Translates to: SSGICTKSAGNL*NGVDESWAADV Trigger: TACATCTGCTGCCCAACTTTCGTCTACACCATTCCACAAATTTCCAGCAGATTTAGTACAGATTCCAGAAGA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028858.9 ENSMUST00020183811.1 |
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| CDS CAA 72 bp | AGATGCCCTGCCCAGGACATGTATATATATGATGACTaGGTTCCAATTCCCTGGTTGTACAGAAACTCAAAA | + |
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Preference number: 6 (lower is better) Translates to: RCPAQDMYIYDD*VPIPWLYRNSK Trigger: TTTTGAGTTTCTGTACAACCAGGGAATTGGAACCAAGTCATCATATATATACATGTCCTGGGCAGGGCATCT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028858.9 ENSMUST00020183811.1 |
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| CDS CAA 72 bp | AAGTCTCCTATACTTTTAGGACTGGGAGCTAGAGTTTaGTTGCAGCGAATACCACATACTGTTGAATCATCC | + |
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Preference number: 6 (lower is better) Translates to: KSPILLGLGARV*LQRIPHTVESS Trigger: GGATGATTCAACAGTATGTGGTATTCGCTGCAACAAAACTCTAGCTCCCAGTCCTAAAAGTATAGGAGACTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000028858.9 ENSMUST00020183811.1 |
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| CDS CAA 90 bp | GCAGATGTAAAGTCTCCTATACTTTTAGGACTGGGAGCTAGAGTTTaGTTGCAGCGAATACCACATACTGTTGAATCATCCATAAACTCA | + |
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Preference number: 6 (lower is better) Translates to: ADVKSPILLGLGARV*LQRIPHTVESSINS Trigger: TGAGTTTATGGATGATTCAACAGTATGTGGTATTCGCTGCAACAAAACTCTAGCTCCCAGTCCTAAAAGTATAGGAGACTTTACATCTGC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000028858.9 ENSMUST00020183811.1 |
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| CDS TCA 72 bp | TCTTTATCATCAGAAATGTCAGGAAGTGTTGGAGCCTaGAACATGTCCATGATGAAACCTAATGCTTCCTTG | + |
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Preference number: 6 (lower is better) Translates to: SLSSEMSGSVGA*NMSMMKPNASL Trigger: CAAGGAAGCATTAGGTTTCATCATGGACATGTTTCAGGCTCCAACACTTCCTGACATTTCTGATGATAAAGA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028858.9 ENSMUST00020183811.1 |
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| CDS CAA 72 bp | TCTCCTATACTTTTAGGACTGGGAGCTAGAGTTTTGTaGCAGCGAATACCACATACTGTTGAATCATCCATA | + |
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Preference number: 6 (lower is better) Translates to: SPILLGLGARVL*QRIPHTVESSI Trigger: TATGGATGATTCAACAGTATGTGGTATTCGCTGCAACAAAACTCTAGCTCCCAGTCCTAAAAGTATAGGAGA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000028858.9 ENSMUST00020183811.1 |
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| CDS CAA 72 bp | CTTAATGTCTCCATGAATGATTTCGCAGCTGTGGACTaGTTCAACCATGTAAAGCATTCTGATAGCGAAAGT | + |
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Preference number: 6 (lower is better) Translates to: LNVSMNDFAAVD*FNHVKHSDSES Trigger: ACTTTCGCTATCAGAATGCTTTACATGGTTGAACAAGTCCACAGCTGCGAAATCATTCATGGAGACATTAAG 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028858.9 ENSMUST00020183811.1 |
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| CDS CAA 90 bp | GATGTAAAGTCTCCTATACTTTTAGGACTGGGAGCTAGAGTTTTGTaGCAGCGAATACCACATACTGTTGAATCATCCATAAACTCATCA | + |
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Preference number: 6 (lower is better) Translates to: DVKSPILLGLGARVL*QRIPHTVESSINSS Trigger: TGATGAGTTTATGGATGATTCAACAGTATGTGGTATTCGCTGCAACAAAACTCTAGCTCCCAGTCCTAAAAGTATAGGAGACTTTACATC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000028858.9 ENSMUST00020183811.1 |
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| CDS TCA 72 bp | CTGCACTTTGCATGGTGTTCCTTGAACCATTCCCAATaGTGTGTTTGGAGTTGTATGAAAATCATTAATGCT | + |
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Preference number: 6 (lower is better) Translates to: LHFAWCSLNHSQ*CVWSCMKIINA Trigger: AGCATTAATGATTTTCATACAACTCCAAACACATCATTGGGAATGGTTCAAGGAACACCATGCAAAGTGCAG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000028858.9 ENSMUST00020183811.1 |
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| CDS TCA 72 bp | ATCATCCATAAACTCATCAGTGTGAGGCATTTCATTTaGTCTCGAGGAATATTTACTGAGAGATCGTTCTCC | + |
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Preference number: 6 (lower is better) Translates to: IIHKLISVRHFI*SRGIFTERSFS Trigger: GGAGAACGATCTCTCAGTAAATATTCCTCGAGATCAAATGAAATGCCTCACACTGATGAGTTTATGGATGAT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028858.9 ENSMUST00020183811.1 |
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| CDS CAA 72 bp | CTTTCATGTAAGAGCCAAAGAGCATACAGTATATTGTaGCAGCAACTCCAAAGTAATCAATCTGGTAGTTCC | + |
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Preference number: 6 (lower is better) Translates to: LSCKSQRAYSIL*QQLQSNQSGSS Trigger: GGAACTACCAGATTGATTACTTTGGAGTTGCTGCAACAATATACTGTATGCTCTTTGGCTCTTACATGAAAG 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028858.9 ENSMUST00020183811.1 |
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| CDS TCA 72 bp | CCACATACTGTTGAATCATCCATAAACTCATCAGTGTaGGGCATTTCATTTGATCTCGAGGAATATTTACTG | + |
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Preference number: 6 (lower is better) Translates to: PHTVESSINSSV*GISFDLEEYLL Trigger: CAGTAAATATTCCTCGAGATCAAATGAAATGCCTCACACTGATGAGTTTATGGATGATTCAACAGTATGTGG 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028858.9 ENSMUST00020183811.1 |
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| CDS CAA 72 bp | TTACTTTCATGTAAGAGCCAAAGAGCATACAGTATATaGTTGCAGCAACTCCAAAGTAATCAATCTGGTAGT | + |
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Preference number: 6 (lower is better) Translates to: LLSCKSQRAYSI*LQQLQSNQSGS Trigger: ACTACCAGATTGATTACTTTGGAGTTGCTGCAACAATATACTGTATGCTCTTTGGCTCTTACATGAAAGTAA 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028858.9 ENSMUST00020183811.1 |
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