RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for BTNL2 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000024340

Ensembl transcript IDs: ENSMUST00000025198.15, ENSMUST00000178562.2

Found 119 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp GTCCTTTCTCTTGAGGACGGAGGAAAGAAACCCTCTCCTCCCACCTaGTTTGTCCCTCTAGTGCTACTGGATTGGGCATTTCTAGAAAAA +
Preference number: 1 (lower is better)
Translates to: VLSLEDGGKKPSPPT*FVPLVLLDWAFLEK
Trigger: TTTTTCTAGAAATGCCCAATCCAGTAGCACTAGAGGGACAAAGCAGGTGGGAGGAGAGGGTTTCTTTCCTCCGTCCTCAAGAGAAAGGAC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025198.15
ENSMUST00000178562.2
3UTR GCA 90 bp GTTATGACCTGCCATATGGGTGCTAGGAATGAAACTCAGGTCCTCTaGAAGAACAGCAAGTGCTTTTACCCCCTTAGTTATTTCTACAAT +
Preference number: 1 (lower is better)
Translates to: VMTCHMGARNETQVL*KNSKCFYPLSYFYN
Trigger: ATTGTAGAAATAACTAAGGGGGTAAAAGCACTTGCTGTTCTTGCAGAGGACCTGAGTTTCATTCCTAGCACCCATATGGCAGGTCATAAC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000025198.15
ENSMUST00000178562.2
3UTR-3UTR TCA 90 bp ACATCTATGTCTGTGTACCACATGTGTGCCTGGTGCCCTCAGAGGCTAGAAAAGCCCCCACCCCCGGTCTaGTTTGTAGTGCAAGTGTCA +
Preference number: 2 (lower is better)
Translates to: TSMSVYHMCAWCPQRLEKPPPPV*FVVQVS
Trigger: TGACACTTGCACTACAAATCAGACCGGGGGTGGGGG...CTTTTCTAGCCTCTGAGGGCACCAGGCACACATGTGGTACACAGACATAGATGT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000025198.15
ENSMUST00000178562.2
3UTR-3UTR TCA 90 bp TCTCCTCCCACCTGCTTTGTCCCTCTAGTGCTACTGGATTGGGCATTTCTAGAACATCCAGGACTCAGATaGGTGACATTTCTCTGCAGG +
Preference number: 2 (lower is better)
Translates to: SPPTCFVPLVLLDWAFLEHPGLR*VTFLCR
Trigger: CCTGCAGAGAAATGTCACTCATCTGAGTCCTGGATG...TTCTAGAAATGCCCAATCCAGTAGCACTAGAGGGACAAAGCAGGTGGGAGGAGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025198.15
ENSMUST00000178562.2
3UTR-3UTR GCA 90 bp GCAGGTCTAAGTTCTTCCATCCTCACGGTGGGTCCAGAAGGTGATGAGATAAAGCAAAGGGAGAGAAGATaGCATCACTGTGAGAGAGGG +
Preference number: 2 (lower is better)
Translates to: AGLSSSILTVGPEGDEIKQRERR*HHCERG
Trigger: CCCTCTCTCACAGTGATGGCATCTTCTCTCCCTTTG...CTTTATCTCATCACCTTCTGGACCCACCGTGAGGATGGAAGAACTTAGACCTGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025198.15
ENSMUST00000178562.2
3UTR-3UTR TCA 90 bp TCTCCTCCCACCTGCTTTGTCCCTCTAGTGCTACTGGATTGGGCATTTCTAGAACAGGACTCAGATGAGTaGCATTTCTCTGCAGGTCTA +
Preference number: 2 (lower is better)
Translates to: SPPTCFVPLVLLDWAFLEQDSDE*HFSAGL
Trigger: TAGACCTGCAGAGAAATGTCACTCATCTGAGTCCTG...TTCTAGAAATGCCCAATCCAGTAGCACTAGAGGGACAAAGCAGGTGGGAGGAGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025198.15
ENSMUST00000178562.2
3UTR-3UTR GCA 90 bp CCCGGTCTGATTTGTAGTGCAAGTGTCAAGTCTTTTGTAACCATGAATCACAGTCCCTCTCCTCCCACCTaGTTTGTCCCTCTAGTGCTA +
Preference number: 2 (lower is better)
Translates to: PGLICSASVKSFVTMNHSPSPPT*FVPLVL
Trigger: TAGCACTAGAGGGACAAAGCAGGTGGGAGGAGAGGG...ACTGTGATTCATGGTTACAAAAGACTTGACACTTGCACTACAAATCAGACCGGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025198.15
ENSMUST00000178562.2
3UTR-3UTR TCA 90 bp TTCTACAATTCCCCCACCCCCGGTCTGATTTGTAGTGCAAGTGTCAAGTCTTTTCAGGACTCAGATGAGTaGCATTTCTCTGCAGGTCTA +
Preference number: 2 (lower is better)
Translates to: FYNSPTPGLICSASVKSFQDSDE*HFSAGL
Trigger: TAGACCTGCAGAGAAATGTCACTCATCTGAGTCCTG...AAAAGACTTGACACTTGCACTACAAATCAGACCGGGGGTGGGGGAATTGTAGAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000025198.15
ENSMUST00000178562.2
3UTR-3UTR TCA 90 bp TTCTACAATTCCCCCACCCCCGGTCTGATTTGTAGTGCAAGTGTCAAGTCTTTTAAGATGCCATCACTGTaGGAGAGGGATCAAGACTAT +
Preference number: 2 (lower is better)
Translates to: FYNSPTPGLICSASVKSFKMPSL*ERDQDY
Trigger: ATAGTCTTGATCCCTCTCTCACAGTGATGGCATCTT...AAAAGACTTGACACTTGCACTACAAATCAGACCGGGGGTGGGGGAATTGTAGAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000025198.15
ENSMUST00000178562.2
3UTR-3UTR GCA 90 bp TTCTACAATTCCCCCACCCCCGGTCTGATTTGTAGTGCAAGTGTCAAGTCTTTTGCACTCCTATGTCAGTaGAGCTTATTGAGGGGAAAA +
Preference number: 2 (lower is better)
Translates to: FYNSPTPGLICSASVKSFALLCQ*SLLRGK
Trigger: TTTTCCCCTCAATAAGCTGCACTGACATAGGAGTGC...AAAAGACTTGACACTTGCACTACAAATCAGACCGGGGGTGGGGGAATTGTAGAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 2 transcripts:
ENSMUST00000025198.15
ENSMUST00000178562.2
3UTR-3UTR CCA 90 bp TTCTACAATTCCCCCACCCCCGGTCTGATTTGTAGTGCAAGTGTCAAGTCTTTTTCCATGAAGAACCTTTaGAGAGCAGCAAGTGAAAGC +
Preference number: 2 (lower is better)
Translates to: FYNSPTPGLICSASVKSFSMKNL*RAASES
Trigger: GCTTTCACTTGCTGCTCTCCAAAGGTTCTTCATGGA...AAAAGACTTGACACTTGCACTACAAATCAGACCGGGGGTGGGGGAATTGTAGAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 15 nt.
Matches the following 2 transcripts:
ENSMUST00000025198.15
ENSMUST00000178562.2
3UTR-3UTR CCA 90 bp AAAGGGAGAGAAGATGCCATCACTGTGAGAGAGGGATCAAGACTATTATGGGTTTCCATGAAGAACCTTTaGAGAGCAGCAAGTGAAAGC +
Preference number: 2 (lower is better)
Translates to: KGREDAITVREGSRLLWVSMKNL*RAASES
Trigger: GCTTTCACTTGCTGCTCTCCAAAGGTTCTTCATGGA...AACCCATAATAGTCTTGATCCCTCTCTCACAGTGATGGCATCTTCTCTCCCTTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025198.15
ENSMUST00000178562.2
3UTR-3UTR GCA 90 bp CCCGGTCTGATTTGTAGTGCAAGTGTCAAGTCTTTTGTAACCATGAATCACAGTGCACTCCTATGTCAGTaGAGCTTATTGAGGGGAAAA +
Preference number: 2 (lower is better)
Translates to: PGLICSASVKSFVTMNHSALLCQ*SLLRGK
Trigger: TTTTCCCCTCAATAAGCTGCACTGACATAGGAGTGC...ACTGTGATTCATGGTTACAAAAGACTTGACACTTGCACTACAAATCAGACCGGG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000025198.15
ENSMUST00000178562.2
3UTR TCA 72 bp TGGGTTGGCTCAGGTCGAGGTGCTCCCAACTGTGCGTaGTGGTTGCATCAGGTACGGACAGGGTCCATGAAG +
Preference number: 3 (lower is better)
Translates to: WVGSGRGAPNCA*WLHQVRTGSMK
Trigger: CTTCATGGACCCTGTCCGTACCTGATGCAACCATCACGCACAGTTGGGAGCACCTCGACCTGAGCCAACCCA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025198.15
ENSMUST00000178562.2
3UTR-3UTR CAA 90 bp ACTGTGAGAGAGGGATCAAGACTATTATGGGTTGGCTCAGGTCGAGGTGCTCCCAGGAAATGGGGTGCGTaGGGCTTGCGGGGTGCATTT +
Preference number: 3 (lower is better)
Translates to: TVREGSRLLWVGSGRGAPRKWGA*GLRGAF
Trigger: AAATGCACCCCGCAAGCCCAACGCACCCCATTTCCT...GGGAGCACCTCGACCTGAGCCAACCCATAATAGTCTTGATCCCTCTCTCACAGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000025198.15
ENSMUST00000178562.2
3UTR CCA 72 bp GATGCCATCACTGTGAGAGAGGGATCAAGACTATTATaGGTTGGCTCAGGTCGAGGTGCTCCCAACTGTGCG +
Preference number: 3 (lower is better)
Translates to: DAITVREGSRLL*VGSGRGAPNCA
Trigger: CGCACAGTTGGGAGCACCTCGACCTGAGCCAACCCATAATAGTCTTGATCCCTCTCTCACAGTGATGGCATC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025198.15
ENSMUST00000178562.2
3UTR CCA 72 bp CATCACTGTGAGAGAGGGATCAAGACTATTATGGGTTaGCTCAGGTCGAGGTGCTCCCAACTGTGCGTGATG +
Preference number: 3 (lower is better)
Translates to: HHCERGIKTIMG*LRSRCSQLCVM
Trigger: CATCACGCACAGTTGGGAGCACCTCGACCTGAGCCAACCCATAATAGTCTTGATCCCTCTCTCACAGTGATG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025198.15
ENSMUST00000178562.2
3UTR-3UTR CAA 90 bp ACTGTGAGAGAGGGATCAAGACTATTATGGGTTGGCTCAGGTCGAGGTGCTCCCTGTCAGTGCAGCTTATaGAGGGGAAAAGATGGGAGG +
Preference number: 3 (lower is better)
Translates to: TVREGSRLLWVGSGRGAPCQCSL*RGKDGR
Trigger: CCTCCCATCTTTTCCCCTCAATAAGCTGCACTGACA...GGGAGCACCTCGACCTGAGCCAACCCATAATAGTCTTGATCCCTCTCTCACAGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000025198.15
ENSMUST00000178562.2
3UTR TCA 72 bp TGTGCCTGGTGCCCTCAGAGGCTAGAAAAGGGCATCTaGCCCCCTAGAACTGGAGTTATAGATGGTTATGAC +
Preference number: 3 (lower is better)
Translates to: CAWCPQRLEKGI*PPRTGVIDGYD
Trigger: GTCATAACCATCTATAACTCCAGTTCTAGGGGGTCAGATGCCCTTTTCTAGCCTCTGAGGGCACCAGGCACA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000025198.15
ENSMUST00000178562.2
3UTR-3UTR CAA 90 bp TCTCCTCCCACCTGCTTTGTCCCTCTAGTGCTACTGGATTGGGCATTTCTAGAATGTCAGTGCAGCTTATaGAGGGGAAAAGATGGGAGG +
Preference number: 3 (lower is better)
Translates to: SPPTCFVPLVLLDWAFLECQCSL*RGKDGR
Trigger: CCTCCCATCTTTTCCCCTCAATAAGCTGCACTGACA...TTCTAGAAATGCCCAATCCAGTAGCACTAGAGGGACAAAGCAGGTGGGAGGAGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000025198.15
ENSMUST00000178562.2
3UTR-3UTR CAA 90 bp GTGACATTTCTCTGCAGGTCTAAGTTCTTCCATCCTCACGGTGGGTCCAGAAGGGGGATAGTCCCTAGATaGAGGGATAGCAGAAAGAGA +
Preference number: 3 (lower is better)
Translates to: VTFLCRSKFFHPHGGSRRGIVPR*RDSRKR
Trigger: TCTCTTTCTGCTATCCCTCAATCTAGGGACTATCCC...CCTTCTGGACCCACCGTGAGGATGGAAGAACTTAGACCTGCAGAGAAATGTCAC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000025198.15
ENSMUST00000178562.2
3UTR GCA 72 bp TGTTTTGCCTACATCTATGTCTGTGTACCACATGTGTaGCTGGTGCCCTCAGAGGCTAGAAAAGGGCATCTG +
Preference number: 3 (lower is better)
Translates to: CFAYIYVCVPHV*LVPSEARKGHL
Trigger: CAGATGCCCTTTTCTAGCCTCTGAGGGCACCAGGCACACATGTGGTACACAGACATAGATGTAGGCAAAACA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000025198.15
ENSMUST00000178562.2
3UTR CCA 72 bp TTGCATCAGGTACGGACAGGGTCCATGAAGAACCTTTaGAGAGCAGCAAGTGAAAGCACTCCTATGTCAGTG +
Preference number: 3 (lower is better)
Translates to: LHQVRTGSMKNL*RAASESTPMSV
Trigger: CACTGACATAGGAGTGCTTTCACTTGCTGCTCTCCAAAGGTTCTTCATGGACCCTGTCCGTACCTGATGCAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025198.15
ENSMUST00000178562.2
3UTR CCA 72 bp CCTCCCACCTGCTTTGTCCCTCTAGTGCTACTGGATTaGGCATTTCTAGAAAAACCCATCCAGGACTCAGAT +
Preference number: 3 (lower is better)
Translates to: PPTCFVPLVLLD*AFLEKPIQDSD
Trigger: ATCTGAGTCCTGGATGGGTTTTTCTAGAAATGCCCAATCCAGTAGCACTAGAGGGACAAAGCAGGTGGGAGG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000025198.15
ENSMUST00000178562.2
3UTR-3UTR CAA 90 bp CCCGGTCTGATTTGTAGTGCAAGTGTCAAGTCTTTTGTAACCATGAATCACAGTAGGAAATGGGGTGCGTaGGGCTTGCGGGGTGCATTT +
Preference number: 3 (lower is better)
Translates to: PGLICSASVKSFVTMNHSRKWGA*GLRGAF
Trigger: AAATGCACCCCGCAAGCCCAACGCACCCCATTTCCT...ACTGTGATTCATGGTTACAAAAGACTTGACACTTGCACTACAAATCAGACCGGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000025198.15
ENSMUST00000178562.2
3UTR GCA 72 bp TTTGGAGAGCAGCAAGTGAAAGCACTCCTATGTCAGTaGAGCTTATTGAGGGGAAAAGATGGGAGGAGGGAT +
Preference number: 3 (lower is better)
Translates to: FGEQQVKALLCQ*SLLRGKDGRRD
Trigger: ATCCCTCCTCCCATCTTTTCCCCTCAATAAGCTGCACTGACATAGGAGTGCTTTCACTTGCTGCTCTCCAAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000025198.15
ENSMUST00000178562.2
3UTR GCA 72 bp TGCCATATGGGTGCTAGGAATGAAACTCAGGTCCTCTaGAAGAACAGCAAGTGCTTTTACCCCCTTAGTTAT +
Preference number: 3 (lower is better)
Translates to: CHMGARNETQVL*KNSKCFYPLSY
Trigger: ATAACTAAGGGGGTAAAAGCACTTGCTGTTCTTGCAGAGGACCTGAGTTTCATTCCTAGCACCCATATGGCA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000025198.15
ENSMUST00000178562.2
3UTR TCA 72 bp GCATTTCTAGAAAAACCCATCCAGGACTCAGATGAGTaGCATTTCTCTGCAGGTCTAAGTTCTTCCATCCTC +
Preference number: 3 (lower is better)
Translates to: AFLEKPIQDSDE*HFSAGLSSSIL
Trigger: GAGGATGGAAGAACTTAGACCTGCAGAGAAATGTCACTCATCTGAGTCCTGGATGGGTTTTTCTAGAAATGC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000025198.15
ENSMUST00000178562.2
CDS-3UTR GCA 90 bp TCACAGTTAGTCCTTTCTCTTGAGGACGGAGGAAAGAAACCCTCTCCTCCCACCCCTCACCTCCATGTGTaGCGTGGTCCTCTTGGGGAG +
Preference number: 4 (lower is better)
Translates to: SQLVLSLEDGGKKPSPPTPHLHV*RGPLGE
Trigger: CTCCCCAAGAGGACCACGGCACACATGGAGGTGAGG...GGTGGGAGGAGAGGGTTTCTTTCCTCCGTCCTCAAGAGAAAGGACTAACTGTGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000025198.15
ENSMUST00000178562.2
CDS-3UTR CCA 90 bp ACTGTGAGAGAGGGATCAAGACTATTATGGGTTGGCTCAGGTCGAGGTGCTCCCGTGCCGTGGTCCTCTTaGGGAGGAGCTGACACGTTA +
Preference number: 4 (lower is better)
Translates to: TVREGSRLLWVGSGRGAPVPWSS*GGADTL
Trigger: TAACGTGTCAGCTCCTCCCCAAGAGGACCACGGCAC...GGGAGCACCTCGACCTGAGCCAACCCATAATAGTCTTGATCCCTCTCTCACAGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025198.15
ENSMUST00000178562.2
CDS-3UTR CCA 90 bp AGGGATCAAGACTATTATGGGTTGGCTCAGGTCGAGGTGCTCCCAACTGTGCGTGAAGCCAGTTCGGTCTaGAGCCTCTCTGACAGAGCG +
Preference number: 4 (lower is better)
Translates to: RDQDYYGLAQVEVLPTVREASSV*SLSDRA
Trigger: CGCTCTGTCAGAGAGGCTCCAGACCGAACTGGCTTC...ACGCACAGTTGGGAGCACCTCGACCTGAGCCAACCCATAATAGTCTTGATCCCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025198.15
CDS-3UTR TCA 90 bp GTGACATTTCTCTGCAGGTCTAAGTTCTTCCATCCTCACGGTGGGTCCAGAAGGCTCTTGGGGAGGAGCTaGCACGTTAGCAGGGCATCT +
Preference number: 4 (lower is better)
Translates to: VTFLCRSKFFHPHGGSRRLLGRS*HVSRAS
Trigger: AGATGCCCTGCTAACGTGTCAGCTCCTCCCCAAGAG...CCTTCTGGACCCACCGTGAGGATGGAAGAACTTAGACCTGCAGAGAAATGTCAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025198.15
ENSMUST00000178562.2
CDS-3UTR GCA 90 bp GTGACATTTCTCTGCAGGTCTAAGTTCTTCCATCCTCACGGTGGGTCCAGAAGGCAGATGCCTTCCCAGTaGACCTCAGGCTCAGGGAAC +
Preference number: 4 (lower is better)
Translates to: VTFLCRSKFFHPHGGSRRQMPSQ*TSGSGN
Trigger: GTTCCCTGAGCCTGAGGTGCACTGGGAAGGCATCTG...CCTTCTGGACCCACCGTGAGGATGGAAGAACTTAGACCTGCAGAGAAATGTCAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025198.15
ENSMUST00000178562.2
CDS-3UTR GCA 90 bp CAGGTACGGACAGGGTCCATGAAGAACCTTTGGAGAGCAGCAAGTGAAAGCACTCACGTGGGTGCCATTTaGATACACGTGGACTGCAGG +
Preference number: 4 (lower is better)
Translates to: QVRTGSMKNLWRAASESTHVGAI*IHVDCR
Trigger: CCTGCAGTCCACGTGTATGCAAATGGCACCCACGTG...AGTGCTTTCACTTGCTGCTCTCCAAAGGTTCTTCATGGACCCTGTCCGTACCTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025198.15
ENSMUST00000178562.2
CDS-3UTR GCA 90 bp ACATCTATGTCTGTGTACCACATGTGTGCCTGGTGCCCTCAGAGGCTAGAAAAGCACGTGGGTGCCATTTaGATACACGTGGACTGCAGG +
Preference number: 4 (lower is better)
Translates to: TSMSVYHMCAWCPQRLEKHVGAI*IHVDCR
Trigger: CCTGCAGTCCACGTGTATGCAAATGGCACCCACGTG...CTTTTCTAGCCTCTGAGGGCACCAGGCACACATGTGGTACACAGACATAGATGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025198.15
ENSMUST00000178562.2
CDS-3UTR CCA 90 bp ACATCTATGTCTGTGTACCACATGTGTGCCTGGTGCCCTCAGAGGCTAGAAAAGCCGGTACATAATCACTaGCATGTCAGGGTCGGAGCG +
Preference number: 4 (lower is better)
Translates to: TSMSVYHMCAWCPQRLEKPVHNH*HVRVGA
Trigger: CGCTCCGACCCTGACATGCCAGTGATTATGTACCGG...CTTTTCTAGCCTCTGAGGGCACCAGGCACACATGTGGTACACAGACATAGATGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025198.15
ENSMUST00000178562.2
CDS-3UTR CCA 90 bp TCTCCTCCCACCTGCTTTGTCCCTCTAGTGCTACTGGATTGGGCATTTCTAGAACCGGTACATAATCACTaGCATGTCAGGGTCGGAGCG +
Preference number: 4 (lower is better)
Translates to: SPPTCFVPLVLLDWAFLEPVHNH*HVRVGA
Trigger: CGCTCCGACCCTGACATGCCAGTGATTATGTACCGG...TTCTAGAAATGCCCAATCCAGTAGCACTAGAGGGACAAAGCAGGTGGGAGGAGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025198.15
ENSMUST00000178562.2
CDS-3UTR CCA 90 bp GTGACATTTCTCTGCAGGTCTAAGTTCTTCCATCCTCACGGTGGGTCCAGAAGGCCTAGAGCAGCCACTTaGAGTAGCACGCTTGTCTCT +
Preference number: 4 (lower is better)
Translates to: VTFLCRSKFFHPHGGSRRPRAAT*SSTLVS
Trigger: AGAGACAAGCGTGCTACTCCAAGTGGCTGCTCTAGG...CCTTCTGGACCCACCGTGAGGATGGAAGAACTTAGACCTGCAGAGAAATGTCAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025198.15
ENSMUST00000178562.2
CDS-3UTR CCA 90 bp TCACAGTTAGTCCTTTCTCTTGAGGACGGAGGAAAGAAACCCTCTCCTCCCACCCGACTTGAACAGGGCTaGGCTGGGAATGTCCGATTA +
Preference number: 4 (lower is better)
Translates to: SQLVLSLEDGGKKPSPPTRLEQG*AGNVRL
Trigger: TAATCGGACATTCCCAGCCCAGCCCTGTTCAAGTCG...GGTGGGAGGAGAGGGTTTCTTTCCTCCGTCCTCAAGAGAAAGGACTAACTGTGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025198.15
ENSMUST00000178562.2
CDS-3UTR CCA 90 bp CAGGTACGGACAGGGTCCATGAAGAACCTTTGGAGAGCAGCAAGTGAAAGCACTCGACTTGAACAGGGCTaGGCTGGGAATGTCCGATTA +
Preference number: 4 (lower is better)
Translates to: QVRTGSMKNLWRAASESTRLEQG*AGNVRL
Trigger: TAATCGGACATTCCCAGCCCAGCCCTGTTCAAGTCG...AGTGCTTTCACTTGCTGCTCTCCAAAGGTTCTTCATGGACCCTGTCCGTACCTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025198.15
ENSMUST00000178562.2
CDS-3UTR CCA 90 bp ACATCTATGTCTGTGTACCACATGTGTGCCTGGTGCCCTCAGAGGCTAGAAAAGAGAAGTGTCTCCACCTaGAACAGCTCCTGGCTCCCT +
Preference number: 4 (lower is better)
Translates to: TSMSVYHMCAWCPQRLEKRSVST*NSSWLP
Trigger: AGGGAGCCAGGAGCTGTTCCAGGTGGAGACACTTCT...CTTTTCTAGCCTCTGAGGGCACCAGGCACACATGTGGTACACAGACATAGATGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025198.15
ENSMUST00000178562.2
CDS-3UTR TCA 90 bp TTCTACAATTCCCCCACCCCCGGTCTGATTTGTAGTGCAAGTGTCAAGTCTTTTCTCTTGGGGAGGAGCTaGCACGTTAGCAGGGCATCT +
Preference number: 4 (lower is better)
Translates to: FYNSPTPGLICSASVKSFLLGRS*HVSRAS
Trigger: AGATGCCCTGCTAACGTGTCAGCTCCTCCCCAAGAG...AAAAGACTTGACACTTGCACTACAAATCAGACCGGGGGTGGGGGAATTGTAGAA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 2 transcripts:
ENSMUST00000025198.15
ENSMUST00000178562.2
CDS-3UTR TCA 90 bp AAAGGGAGAGAAGATGCCATCACTGTGAGAGAGGGATCAAGACTATTATGGGTTGGCCCAGAGGGAGGCTaGTGGAGCAGGTCACATTCA +
Preference number: 4 (lower is better)
Translates to: KGREDAITVREGSRLLWVGPEGG*WSRSHS
Trigger: TGAATGTGACCTGCTCCATCAGCCTCCCTCTGGGCC...AACCCATAATAGTCTTGATCCCTCTCTCACAGTGATGGCATCTTCTCTCCCTTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025198.15
ENSMUST00000178562.2
CDS-3UTR GCA 90 bp AAAGGGAGAGAAGATGCCATCACTGTGAGAGAGGGATCAAGACTATTATGGGTTTCTCTGTCCCTCCACTaGACATGGGGCCGTGGGAAC +
Preference number: 4 (lower is better)
Translates to: KGREDAITVREGSRLLWVSLSLH*TWGRGN
Trigger: GTTCCCACGGCCCCATGTGCAGTGGAGGGACAGAGA...AACCCATAATAGTCTTGATCCCTCTCTCACAGTGATGGCATCTTCTCTCCCTTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025198.15
ENSMUST00000178562.2
CDS-3UTR CCA 90 bp GTGACATTTCTCTGCAGGTCTAAGTTCTTCCATCCTCACGGTGGGTCCAGAAGGCCGAGTCCCTCCACATaGATATTTGGGGAAGATCCT +
Preference number: 4 (lower is better)
Translates to: VTFLCRSKFFHPHGGSRRPSPST*IFGEDP
Trigger: AGGATCTTCCCCAAATATCCATGTGGAGGGACTCGG...CCTTCTGGACCCACCGTGAGGATGGAAGAACTTAGACCTGCAGAGAAATGTCAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025198.15
ENSMUST00000178562.2
CDS-3UTR CCA 90 bp CAGGTACGGACAGGGTCCATGAAGAACCTTTGGAGAGCAGCAAGTGAAAGCACTCCGAGTCCCTCCACATaGATATTTGGGGAAGATCCT +
Preference number: 4 (lower is better)
Translates to: QVRTGSMKNLWRAASESTPSPST*IFGEDP
Trigger: AGGATCTTCCCCAAATATCCATGTGGAGGGACTCGG...AGTGCTTTCACTTGCTGCTCTCCAAAGGTTCTTCATGGACCCTGTCCGTACCTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025198.15
ENSMUST00000178562.2
CDS-3UTR CCA 90 bp AAAGGGAGAGAAGATGCCATCACTGTGAGAGAGGGATCAAGACTATTATGGGTTCGGGCTGTTTTCTCCTaGCCCAGAGGGAGGCTGATG +
Preference number: 4 (lower is better)
Translates to: KGREDAITVREGSRLLWVRAVFS*PRGRLM
Trigger: CATCAGCCTCCCTCTGGGCCAGGAGAAAACAGCCCG...AACCCATAATAGTCTTGATCCCTCTCTCACAGTGATGGCATCTTCTCTCCCTTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025198.15
ENSMUST00000178562.2
CDS-3UTR CCA 90 bp AGACAAAGGGAGAGAAGATGCCATCACTGTGAGAGAGGGATCAAGACTATTATGCGGGCTGTTTTCTCCTaGCCCAGAGGGAGGCTGATG +
Preference number: 4 (lower is better)
Translates to: RQRERRCHHCERGIKTIMRAVFS*PRGRLM
Trigger: CATCAGCCTCCCTCTGGGCCAGGAGAAAACAGCCCG...CATAATAGTCTTGATCCCTCTCTCACAGTGATGGCATCTTCTCTCCCTTTGTCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025198.15
ENSMUST00000178562.2
CDS-3UTR TCA 90 bp AGGGATCAAGACTATTATGGGTTGGCTCAGGTCGAGGTGCTCCCAACTGTGCGTTCTTCACCTGGCACATaGTTCTCAGAGAAACTCATC +
Preference number: 4 (lower is better)
Translates to: RDQDYYGLAQVEVLPTVRSSPGT*FSEKLI
Trigger: GATGAGTTTCTCTGAGAATCATGTGCCAGGTGAAGA...ACGCACAGTTGGGAGCACCTCGACCTGAGCCAACCCATAATAGTCTTGATCCCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025198.15
ENSMUST00000178562.2
CDS-3UTR CCA 90 bp AGACAAAGGGAGAGAAGATGCCATCACTGTGAGAGAGGGATCAAGACTATTATGGTGCCGTGGTCCTCTTaGGGAGGAGCTGACACGTTA +
Preference number: 4 (lower is better)
Translates to: RQRERRCHHCERGIKTIMVPWSS*GGADTL
Trigger: TAACGTGTCAGCTCCTCCCCAAGAGGACCACGGCAC...CATAATAGTCTTGATCCCTCTCTCACAGTGATGGCATCTTCTCTCCCTTTGTCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025198.15
ENSMUST00000178562.2
CDS-3UTR CCA 90 bp AAAGGGAGAGAAGATGCCATCACTGTGAGAGAGGGATCAAGACTATTATGGGTTTCTCTGACAGAGCGATaGTGGCCTCCTGGGTCTCTC +
Preference number: 4 (lower is better)
Translates to: KGREDAITVREGSRLLWVSLTER*WPPGSL
Trigger: GAGAGACCCAGGAGGCCACCATCGCTCTGTCAGAGA...AACCCATAATAGTCTTGATCCCTCTCTCACAGTGATGGCATCTTCTCTCCCTTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025198.15
CDS-3UTR CCA 90 bp ACTGTGAGAGAGGGATCAAGACTATTATGGGTTGGCTCAGGTCGAGGTGCTCCCCTTCATCCGAAGTTCTaGCATTGTGAATTTGCAGGG +
Preference number: 4 (lower is better)
Translates to: TVREGSRLLWVGSGRGAPLHPKF*HCEFAG
Trigger: CCCTGCAAATTCACAATGCCAGAACTTCGGATGAAG...GGGAGCACCTCGACCTGAGCCAACCCATAATAGTCTTGATCCCTCTCTCACAGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025198.15
ENSMUST00000178562.2
3UTR CAA 72 bp TCCTCCCACCTGCTTTGTCCCTCTAGTGCTACTGGATaGGGCATTTCTAGAAAAACCCATCCAGGACTCAGA +
Preference number: 4 (lower is better)
Translates to: SSHLLCPSSATG*GISRKTHPGLR
Trigger: TCTGAGTCCTGGATGGGTTTTTCTAGAAATGCCCAATCCAGTAGCACTAGAGGGACAAAGCAGGTGGGAGGA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000025198.15
ENSMUST00000178562.2
CDS-3UTR TCA 90 bp ACTGTGAGAGAGGGATCAAGACTATTATGGGTTGGCTCAGGTCGAGGTGCTCCCGAAGTTCTGGCATTGTaGATTTGCAGGGTCAGTTTT +
Preference number: 4 (lower is better)
Translates to: TVREGSRLLWVGSGRGAPEVLAL*ICRVSF
Trigger: AAAACTGACCCTGCAAATTCACAATGCCAGAACTTC...GGGAGCACCTCGACCTGAGCCAACCCATAATAGTCTTGATCCCTCTCTCACAGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025198.15
ENSMUST00000178562.2
CDS-3UTR GCA 90 bp CCCGGTCTGATTTGTAGTGCAAGTGTCAAGTCTTTTGTAACCATGAATCACAGTCAGATGCCTTCCCAGTaGACCTCAGGCTCAGGGAAC +
Preference number: 4 (lower is better)
Translates to: PGLICSASVKSFVTMNHSQMPSQ*TSGSGN
Trigger: GTTCCCTGAGCCTGAGGTGCACTGGGAAGGCATCTG...ACTGTGATTCATGGTTACAAAAGACTTGACACTTGCACTACAAATCAGACCGGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025198.15
ENSMUST00000178562.2
CDS-3UTR CCA 90 bp AGACAAAGGGAGAGAAGATGCCATCACTGTGAGAGAGGGATCAAGACTATTATGAGAAGTGTCTCCACCTaGAACAGCTCCTGGCTCCCT +
Preference number: 4 (lower is better)
Translates to: RQRERRCHHCERGIKTIMRSVST*NSSWLP
Trigger: AGGGAGCCAGGAGCTGTTCCAGGTGGAGACACTTCT...CATAATAGTCTTGATCCCTCTCTCACAGTGATGGCATCTTCTCTCCCTTTGTCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025198.15
ENSMUST00000178562.2
CDS-3UTR CCA 90 bp GCAGGTCTAAGTTCTTCCATCCTCACGGTGGGTCCAGAAGGTGATGAGATAAAGGGAAGTCGCCGCCTGTaGTTTTCGTCATTCTTGTTA +
Preference number: 4 (lower is better)
Translates to: AGLSSSILTVGPEGDEIKGSRRL*FSSFLL
Trigger: TAACAAGAATGACGAAAACCACAGGCGGCGACTTCC...CTTTATCTCATCACCTTCTGGACCCACCGTGAGGATGGAAGAACTTAGACCTGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025198.15
ENSMUST00000178562.2
CDS-3UTR GCA 90 bp AAGTGTCAAGTCTTTTGTAACCATGAATCACAGTTAGTCCTTTCTCTTGAGGACCCTCACCTCCATGTGTaGCGTGGTCCTCTTGGGGAG +
Preference number: 4 (lower is better)
Translates to: KCQVFCNHESQLVLSLEDPHLHV*RGPLGE
Trigger: CTCCCCAAGAGGACCACGGCACACATGGAGGTGAGG...GTCCTCAAGAGAAAGGACTAACTGTGATTCATGGTTACAAAAGACTTGACACTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000025198.15
ENSMUST00000178562.2
CDS-3UTR GCA 90 bp AAAGGGAGAGAAGATGCCATCACTGTGAGAGAGGGATCAAGACTATTATGGGTTACTTTTCTCCCCAGATaGCTTCCCAGTGCACCTCAG +
Preference number: 4 (lower is better)
Translates to: KGREDAITVREGSRLLWVTFLPR*LPSAPQ
Trigger: CTGAGGTGCACTGGGAAGGCATCTGGGGAGAAAAGT...AACCCATAATAGTCTTGATCCCTCTCTCACAGTGATGGCATCTTCTCTCCCTTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000025198.15
ENSMUST00000178562.2
CDS-3UTR CCA 90 bp ACATCTATGTCTGTGTACCACATGTGTGCCTGGTGCCCTCAGAGGCTAGAAAAGCTTCATCCGAAGTTCTaGCATTGTGAATTTGCAGGG +
Preference number: 4 (lower is better)
Translates to: TSMSVYHMCAWCPQRLEKLHPKF*HCEFAG
Trigger: CCCTGCAAATTCACAATGCCAGAACTTCGGATGAAG...CTTTTCTAGCCTCTGAGGGCACCAGGCACACATGTGGTACACAGACATAGATGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025198.15
ENSMUST00000178562.2
CDS-3UTR CCA 90 bp AAGTGTCAAGTCTTTTGTAACCATGAATCACAGTTAGTCCTTTCTCTTGAGGACTTGCTGACAGAGCGATaGTGGCCTCCTGGGTCTCTC +
Preference number: 4 (lower is better)
Translates to: KCQVFCNHESQLVLSLEDLLTER*WPPGSL
Trigger: GAGAGACCCAGGAGGCCACCATCGCTCTGTCAGCAA...GTCCTCAAGAGAAAGGACTAACTGTGATTCATGGTTACAAAAGACTTGACACTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000178562.2
CDS-3UTR TCA 90 bp TTCTACAATTCCCCCACCCCCGGTCTGATTTGTAGTGCAAGTGTCAAGTCTTTTTCTTCACCTGGCACATaGTTCTCAGAGAAACTCATC +
Preference number: 4 (lower is better)
Translates to: FYNSPTPGLICSASVKSFSSPGT*FSEKLI
Trigger: GATGAGTTTCTCTGAGAATCATGTGCCAGGTGAAGA...AAAAGACTTGACACTTGCACTACAAATCAGACCGGGGGTGGGGGAATTGTAGAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 15 nt.
Matches the following 2 transcripts:
ENSMUST00000025198.15
ENSMUST00000178562.2
CDS-3UTR TCA 90 bp GTGACATTTCTCTGCAGGTCTAAGTTCTTCCATCCTCACGGTGGGTCCAGAAGGTTCTTGTTATTTTCCTaGTTGCTGCTGTGTGTTTGT +
Preference number: 4 (lower is better)
Translates to: VTFLCRSKFFHPHGGSRRFLLFS*LLLCVC
Trigger: ACAAACACACAGCAGCAATCAGGAAAATAACAAGAA...CCTTCTGGACCCACCGTGAGGATGGAAGAACTTAGACCTGCAGAGAAATGTCAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025198.15
ENSMUST00000178562.2
CDS-3UTR TCA 90 bp CAGGTACGGACAGGGTCCATGAAGAACCTTTGGAGAGCAGCAAGTGAAAGCACTTTCTTGTTATTTTCCTaGTTGCTGCTGTGTGTTTGT +
Preference number: 4 (lower is better)
Translates to: QVRTGSMKNLWRAASESTFLLFS*LLLCVC
Trigger: ACAAACACACAGCAGCAATCAGGAAAATAACAAGAA...AGTGCTTTCACTTGCTGCTCTCCAAAGGTTCTTCATGGACCCTGTCCGTACCTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025198.15
ENSMUST00000178562.2
CDS-3UTR GCA 90 bp CCCGGTCTGATTTGTAGTGCAAGTGTCAAGTCTTTTGTAACCATGAATCACAGTTTGTATTCTACCATCTaGTCTCCAGCCACGTGGGTG +
Preference number: 4 (lower is better)
Translates to: PGLICSASVKSFVTMNHSLYSTI*SPATWV
Trigger: CACCCACGTGGCTGGAGAGCAGATGGTAGAATACAA...ACTGTGATTCATGGTTACAAAAGACTTGACACTTGCACTACAAATCAGACCGGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025198.15
ENSMUST00000178562.2
CDS-3UTR GCA 90 bp CAGGTACGGACAGGGTCCATGAAGAACCTTTGGAGAGCAGCAAGTGAAAGCACTTGTTATTTTCCTGATTaGTGCTGTGTGTTTGTTCAT +
Preference number: 4 (lower is better)
Translates to: QVRTGSMKNLWRAASESTCYFPD*CCVFVH
Trigger: ATGAACAAACACACAGCAGCAATCAGGAAAATAACA...AGTGCTTTCACTTGCTGCTCTCCAAAGGTTCTTCATGGACCCTGTCCGTACCTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025198.15
ENSMUST00000178562.2
CDS-3UTR GCA 90 bp AAGTGTCAAGTCTTTTGTAACCATGAATCACAGTTAGTCCTTTCTCTTGAGGACTTGTATTCTACCATCTaGTCTCCAGCCACGTGGGTG +
Preference number: 4 (lower is better)
Translates to: KCQVFCNHESQLVLSLEDLYSTI*SPATWV
Trigger: CACCCACGTGGCTGGAGAGCAGATGGTAGAATACAA...GTCCTCAAGAGAAAGGACTAACTGTGATTCATGGTTACAAAAGACTTGACACTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025198.15
ENSMUST00000178562.2
CDS-3UTR GCA 90 bp TTCTACAATTCCCCCACCCCCGGTCTGATTTGTAGTGCAAGTGTCAAGTCTTTTTGTTATTTTCCTGATTaGTGCTGTGTGTTTGTTCAT +
Preference number: 4 (lower is better)
Translates to: FYNSPTPGLICSASVKSFCYFPD*CCVFVH
Trigger: ATGAACAAACACACAGCAGCAATCAGGAAAATAACA...AAAAGACTTGACACTTGCACTACAAATCAGACCGGGGGTGGGGGAATTGTAGAA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 19 nt.
Matches the following 2 transcripts:
ENSMUST00000025198.15
ENSMUST00000178562.2
CDS GCA 90 bp TGCCTTCCCAGTGCACCTCAGGCTCAGGGAACCAGCCTCGGGACGTaGATACAAGCTGGACCTCTCCTTCTCCGAGTCCCTCCACATGGA +
Preference number: 5 (lower is better)
Translates to: CLPSAPQAQGTSLGT*IQAGPLLLRVPPHG
Trigger: TCCATGTGGAGGGACTCGGAGAAGGAGAGGTCCAGCTTGTATGCACGTCCCGAGGCTGGTTCCCTGAGCCTGAGGTGCACTGGGAAGGCA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025198.15
ENSMUST00000178562.2
CDS CCA 90 bp TCCCCCTCCTGGAAGCGGCACCAGTACTGGCCATCGTCACTTGGCTaGACCTGGCGAATCTTCAGAGCCACACTGCCCTCTTCAGTGCTG +
Preference number: 5 (lower is better)
Translates to: SPSWKRHQYWPSSLG*TWRIFRATLPSSVL
Trigger: CAGCACTGAAGAGGGCAGTGTGGCTCTGAAGATTCGCCAGGTCCAGCCAAGTGACGATGGCCAGTACTGGTGCCGCTTCCAGGAGGGGGA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000025198.15
ENSMUST00000178562.2
CDS CCA 90 bp TCCTGGAAGCGGCACCAGTACTGGCCATCGTCACTTGGCTGGACCTaGCGAATCTTCAGAGCCACACTGCCCTCTTCAGTGCTGTCCTCC +
Preference number: 5 (lower is better)
Translates to: SWKRHQYWPSSLGWT*RIFRATLPSSVLSS
Trigger: GGAGGACAGCACTGAAGAGGGCAGTGTGGCTCTGAAGATTCGCCAGGTCCAGCCAAGTGACGATGGCCAGTACTGGTGCCGCTTCCAGGA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025198.15
ENSMUST00000178562.2
CDS CCA 90 bp TGCACCTCAGGCTCAGGGAACCAGCCTCGGGACGTGCATACAAGCTaGACCTCTCCTTCTCCGAGTCCCTCCACATGGATATTTGGGGAA +
Preference number: 5 (lower is better)
Translates to: CTSGSGNQPRDVHTS*TSPSPSPSTWIFGE
Trigger: TTCCCCAAATATCCATGTGGAGGGACTCGGAGAAGGAGAGGTCCAGCTTGTATGCACGTCCCGAGGCTGGTTCCCTGAGCCTGAGGTGCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025198.15
ENSMUST00000178562.2
CDS GCA 90 bp GCCAAGATTGGGAGGTTAGGACCGACCACTCTGAAGTCATCTGGGTaGTTTATAGTCAGCAGGACGAAGAGGAAGGAGGCAGCCACGCCA +
Preference number: 5 (lower is better)
Translates to: AKIGRLGPTTLKSSG*FIVSRTKRKEAATP
Trigger: TGGCGTGGCTGCCTCCTTCCTCTTCGTCCTGCTGACTATAAAGCACCCAGATGACTTCAGAGTGGTCGGTCCTAACCTCCCAATCTTGGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025198.15
ENSMUST00000178562.2
CDS CCA 90 bp GAGGCAGCACCACAACAGGCAGGGTCATCCATAGCAAAGCTATCTTaGAGTCTGAGAGAGGGAAACGGGCTGTTTTCTCCTGGCCCAGAG +
Preference number: 5 (lower is better)
Translates to: EAAPQQAGSSIAKLS*SLREGNGLFSPGPE
Trigger: CTCTGGGCCAGGAGAAAACAGCCCGTTTCCCTCTCTCAGACTCCAAGATAGCTTTGCTATGGATGACCCTGCCTGTTGTGGTGCTGCCTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025198.15
ENSMUST00000178562.2
CDS-3UTR CAA 90 bp AGGGATCAAGACTATTATGGGTTGGCTCAGGTCGAGGTGCTCCCAACTGTGCGTCAGCTCCTGGCTCCCTaGCTGAAAGGCCTCGGAAAA +
Preference number: 5 (lower is better)
Translates to: RDQDYYGLAQVEVLPTVRQLLAP*LKGLGK
Trigger: TTTTCCGAGGCCTTTCAGCAAGGGAGCCAGGAGCTG...ACGCACAGTTGGGAGCACCTCGACCTGAGCCAACCCATAATAGTCTTGATCCCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025198.15
ENSMUST00000178562.2
CDS CCA 90 bp GACGTGCATACAAGCTGGACCTCTCCTTCTCCGAGTCCCTCCACATaGATATTTGGGGAAGATCCTAGAGCAGCCACTTGGAGTAGCACG +
Preference number: 5 (lower is better)
Translates to: DVHTSWTSPSPSPST*IFGEDPRAATWSST
Trigger: CGTGCTACTCCAAGTGGCTGCTCTAGGATCTTCCCCAAATATCCATGTGGAGGGACTCGGAGAAGGAGAGGTCCAGCTTGTATGCACGTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025198.15
ENSMUST00000178562.2
CDS CCA 90 bp AAAGCTATCTTGGAGTCTGAGAGAGGGAAACGGGCTGTTTTCTCCTaGCCCAGAGGGAGGCTGATGGAGCAGGTCACATTCACCATGGAG +
Preference number: 5 (lower is better)
Translates to: KAILESERGKRAVFS*PRGRLMEQVTFTME
Trigger: CTCCATGGTGAATGTGACCTGCTCCATCAGCCTCCCTCTGGGCCAGGAGAAAACAGCCCGTTTCCCTCTCTCAGACTCCAAGATAGCTTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025198.15
ENSMUST00000178562.2
CDS-3UTR CAA 90 bp TCACAGTTAGTCCTTTCTCTTGAGGACGGAGGAAAGAAACCCTCTCCTCCCACCCTTGGAGTAGCACGCTaGTCTCTCTCCAGTAGTCCC +
Preference number: 5 (lower is better)
Translates to: SQLVLSLEDGGKKPSPPTLGVAR*SLSSSP
Trigger: GGGACTACTGGAGAGAGACAAGCGTGCTACTCCAAG...GGTGGGAGGAGAGGGTTTCTTTCCTCCGTCCTCAAGAGAAAGGACTAACTGTGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025198.15
ENSMUST00000178562.2
CDS-3UTR CAA 90 bp ACATCTATGTCTGTGTACCACATGTGTGCCTGGTGCCCTCAGAGGCTAGAAAAGCCACGTGGGTGCCATTaGCATACACGTGGACTGCAG +
Preference number: 5 (lower is better)
Translates to: TSMSVYHMCAWCPQRLEKPRGCH*HTRGLQ
Trigger: CTGCAGTCCACGTGTATGCAAATGGCACCCACGTGG...CTTTTCTAGCCTCTGAGGGCACCAGGCACACATGTGGTACACAGACATAGATGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025198.15
ENSMUST00000178562.2
CDS-3UTR CAA 90 bp GCAGGTCTAAGTTCTTCCATCCTCACGGTGGGTCCAGAAGGTGATGAGATAAAGCAGCTCCTGGCTCCCTaGCTGAAAGGCCTCGGAAAA +
Preference number: 5 (lower is better)
Translates to: AGLSSSILTVGPEGDEIKQLLAP*LKGLGK
Trigger: TTTTCCGAGGCCTTTCAGCAAGGGAGCCAGGAGCTG...CTTTATCTCATCACCTTCTGGACCCACCGTGAGGATGGAAGAACTTAGACCTGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025198.15
ENSMUST00000178562.2
CDS TCA 90 bp CCAAAAAGGCACCGGTACTGCCCTTCATCCGAAGTTCTGGCATTGTaGATTTGCAGGGTCAGTTTTCCCTCGTGGATGGCATCAGTCACC +
Preference number: 5 (lower is better)
Translates to: PKRHRYCPSSEVLAL*ICRVSFPSWMASVT
Trigger: GGTGACTGATGCCATCCACGAGGGAAAACTGACCCTGCAAATTCACAATGCCAGAACTTCGGATGAAGGGCAGTACCGGTGCCTTTTTGG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000025198.15
ENSMUST00000178562.2
CDS CCA 90 bp TTTAGCCAAGATTGGGAGGTTAGGACCGACCACTCTGAAGTCATCTaGGTGCTTTATAGTCAGCAGGACGAAGAGGAAGGAGGCAGCCAC +
Preference number: 5 (lower is better)
Translates to: FSQDWEVRTDHSEVI*VLYSQQDEEEGGSH
Trigger: GTGGCTGCCTCCTTCCTCTTCGTCCTGCTGACTATAAAGCACCCAGATGACTTCAGAGTGGTCGGTCCTAACCTCCCAATCTTGGCTAAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025198.15
ENSMUST00000178562.2
CDS-3UTR CAA 90 bp ACTGTGAGAGAGGGATCAAGACTATTATGGGTTGGCTCAGGTCGAGGTGCTCCCCCTCCACATGGATATTaGGGGAAGATCCTAGAGCAG +
Preference number: 5 (lower is better)
Translates to: TVREGSRLLWVGSGRGAPPPHGY*GKILEQ
Trigger: CTGCTCTAGGATCTTCCCCAAATATCCATGTGGAGG...GGGAGCACCTCGACCTGAGCCAACCCATAATAGTCTTGATCCCTCTCTCACAGT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000025198.15
ENSMUST00000178562.2
CDS-3UTR CAA 90 bp AGGGATCAAGACTATTATGGGTTGGCTCAGGTCGAGGTGCTCCCAACTGTGCGTCCTCCACATGGATATTaGGGGAAGATCCTAGAGCAG +
Preference number: 5 (lower is better)
Translates to: RDQDYYGLAQVEVLPTVRPPHGY*GKILEQ
Trigger: CTGCTCTAGGATCTTCCCCAAATATCCATGTGGAGG...ACGCACAGTTGGGAGCACCTCGACCTGAGCCAACCCATAATAGTCTTGATCCCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025198.15
ENSMUST00000178562.2
CDS-3UTR CAA 90 bp GCAGGTCTAAGTTCTTCCATCCTCACGGTGGGTCCAGAAGGTGATGAGATAAAGATTGCTGCTGTGTGTTaGTTCATTGGTCCGCCGCCA +
Preference number: 5 (lower is better)
Translates to: AGLSSSILTVGPEGDEIKIAAVC*FIGPPP
Trigger: TGGCGGCGGACCAATGAACAAACACACAGCAGCAAT...CTTTATCTCATCACCTTCTGGACCCACCGTGAGGATGGAAGAACTTAGACCTGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025198.15
ENSMUST00000178562.2
CDS TCA 90 bp GAAGGAAGTCGCCGCCTGTGGTTTTCGTCATTCTTGTTATTTTCCTaGTTGCTGCTGTGTGTTTGTTCATTGGTCCGCCGCCACCGTTTC +
Preference number: 5 (lower is better)
Translates to: EGSRRLWFSSFLLFS*LLLCVCSLVRRHRF
Trigger: GAAACGGTGGCGGCGGACCAATGAACAAACACACAGCAGCAATCAGGAAAATAACAAGAATGACGAAAACCACAGGCGGCGACTTCCTTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000025198.15
ENSMUST00000178562.2
CDS GCA 90 bp GAAGTCGCCGCCTGTGGTTTTCGTCATTCTTGTTATTTTCCTGATTaGTGCTGTGTGTTTGTTCATTGGTCCGCCGCCACCGTTTCACCT +
Preference number: 5 (lower is better)
Translates to: EVAACGFRHSCYFPD*CCVFVHWSAATVSP
Trigger: AGGTGAAACGGTGGCGGCGGACCAATGAACAAACACACAGCAGCAATCAGGAAAATAACAAGAATGACGAAAACCACAGGCGGCGACTTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000025198.15
ENSMUST00000178562.2
CDS-3UTR CAA 90 bp TTCTACAATTCCCCCACCCCCGGTCTGATTTGTAGTGCAAGTGTCAAGTCTTTTCTTGGAGTAGCACGCTaGTCTCTCTCCAGTAGTCCC +
Preference number: 5 (lower is better)
Translates to: FYNSPTPGLICSASVKSFLGVAR*SLSSSP
Trigger: GGGACTACTGGAGAGAGACAAGCGTGCTACTCCAAG...AAAAGACTTGACACTTGCACTACAAATCAGACCGGGGGTGGGGGAATTGTAGAA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000025198.15
ENSMUST00000178562.2
CDS-3UTR CAA 90 bp AGACAAAGGGAGAGAAGATGCCATCACTGTGAGAGAGGGATCAAGACTATTATGCCACGTGGGTGCCATTaGCATACACGTGGACTGCAG +
Preference number: 5 (lower is better)
Translates to: RQRERRCHHCERGIKTIMPRGCH*HTRGLQ
Trigger: CTGCAGTCCACGTGTATGCAAATGGCACCCACGTGG...CATAATAGTCTTGATCCCTCTCTCACAGTGATGGCATCTTCTCTCCCTTTGTCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025198.15
ENSMUST00000178562.2
CDS-3UTR CAA 90 bp AAAGGGAGAGAAGATGCCATCACTGTGAGAGAGGGATCAAGACTATTATGGGTTTATGTTCTCTCCGACTaGAACAGGGCTGGGCTGGGA +
Preference number: 5 (lower is better)
Translates to: KGREDAITVREGSRLLWVYVLSD*NRAGLG
Trigger: TCCCAGCCCAGCCCTGTTCAAGTCGGAGAGAACATA...AACCCATAATAGTCTTGATCCCTCTCTCACAGTGATGGCATCTTCTCTCCCTTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025198.15
ENSMUST00000178562.2
CDS-3UTR CAA 90 bp TTCTACAATTCCCCCACCCCCGGTCTGATTTGTAGTGCAAGTGTCAAGTCTTTTATTGCTGCTGTGTGTTaGTTCATTGGTCCGCCGCCA +
Preference number: 5 (lower is better)
Translates to: FYNSPTPGLICSASVKSFIAAVC*FIGPPP
Trigger: TGGCGGCGGACCAATGAACAAACACACAGCAGCAAT...AAAAGACTTGACACTTGCACTACAAATCAGACCGGGGGTGGGGGAATTGTAGAA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000025198.15
ENSMUST00000178562.2
CDS-3UTR CAA 90 bp GTGACATTTCTCTGCAGGTCTAAGTTCTTCCATCCTCACGGTGGGTCCAGAAGGAATGAAGTCCTCCCTTaGTATTCTACCATCTGCTCT +
Preference number: 5 (lower is better)
Translates to: VTFLCRSKFFHPHGGSRRNEVLP*YSTICS
Trigger: AGAGCAGATGGTAGAATACAAAGGGAGGACTTCATT...CCTTCTGGACCCACCGTGAGGATGGAAGAACTTAGACCTGCAGAGAAATGTCAC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025198.15
ENSMUST00000178562.2
CDS-3UTR CAA 90 bp AAGTGTCAAGTCTTTTGTAACCATGAATCACAGTTAGTCCTTTCTCTTGAGGACAATGAAGTCCTCCCTTaGTATTCTACCATCTGCTCT +
Preference number: 5 (lower is better)
Translates to: KCQVFCNHESQLVLSLEDNEVLP*YSTICS
Trigger: AGAGCAGATGGTAGAATACAAAGGGAGGACTTCATT...GTCCTCAAGAGAAAGGACTAACTGTGATTCATGGTTACAAAAGACTTGACACTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025198.15
ENSMUST00000178562.2
CDS GCA 72 bp AGTGCACCTCAGGCTCAGGGAACCAGCCTCGGGACGTaGATACAAGCTGGACCTCTCCTTCTCCGAGTCCCT +
Preference number: 6 (lower is better)
Translates to: SAPQAQGTSLGT*IQAGPLLLRVP
Trigger: AGGGACTCGGAGAAGGAGAGGTCCAGCTTGTATGCACGTCCCGAGGCTGGTTCCCTGAGCCTGAGGTGCACT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025198.15
ENSMUST00000178562.2
CDS TCA 72 bp TACGCTAACGGAAGCCAGTTCGGTCTGGAGCCTCTCTaGCAGAGCGATGGTGGCCTCCTGGGTCTCTCTGAG +
Preference number: 6 (lower is better)
Translates to: YANGSQFGLEPL*QSDGGLLGLSE
Trigger: CTCAGAGAGACCCAGGAGGCCACCATCGCTCTGTCAGAGAGGCTCCAGACCGAACTGGCTTCCGTTAGCGTA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025198.15
CDS TCA 72 bp TCAGCTGCATGCCTCCATCTTTCAAGACCTCCCTGGTaGTCCGTGGGGTGGAACCCACCGCCATCACCTGCA +
Preference number: 6 (lower is better)
Translates to: SAACLHLSRPPW*SVGWNPPPSPA
Trigger: TGCAGGTGATGGCGGTGGGTTCCACCCCACGGATCACCAGGGAGGTCTTGAAAGATGGAGGCATGCAGCTGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025198.15
ENSMUST00000178562.2
CDS GCA 72 bp CACTTGGCTGGACCTGGCGAATCTTCAGAGCCACACTaGCCTCTTCAGTGCTGTCCTCCATCCACTCTGCCC +
Preference number: 6 (lower is better)
Translates to: HLAGPGESSEPH*PLQCCPPSTLP
Trigger: GGGCAGAGTGGATGGAGGACAGCACTGAAGAGGGCAGTGTGGCTCTGAAGATTCGCCAGGTCCAGCCAAGTG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025198.15
ENSMUST00000178562.2
CDS GCA 72 bp TCCAGCCACGTGGGTGCCATTTGCATACACGTGGACTaGAGGGTAATAGCGGGATCGGAGCCACCTCACCTC +
Preference number: 6 (lower is better)
Translates to: SSHVGAICIHVD*RVIAGSEPPHL
Trigger: GAGGTGAGGTGGCTCCGATCCCGCTATTACCCTGCAGTCCACGTGTATGCAAATGGCACCCACGTGGCTGGA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025198.15
ENSMUST00000178562.2
CDS CCA 72 bp CCCAGTCACCTCAGCTCCATCCCGGTACATAATCACTaGCATGTCAGGGTCGGAGCGGTACCACCTCACCTC +
Preference number: 6 (lower is better)
Translates to: PSHLSSIPVHNH*HVRVGAVPPHL
Trigger: GAGGTGAGGTGGTACCGCTCCGACCCTGACATGCCAGTGATTATGTACCGGGATGGAGCTGAGGTGACTGGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025198.15
ENSMUST00000178562.2
CDS CCA 72 bp TGGAAGCGGCACCAGTACTGGCCATCGTCACTTGGCTaGACCTGGCGAATCTTCAGAGCCACACTGCCCTCT +
Preference number: 6 (lower is better)
Translates to: WKRHQYWPSSLG*TWRIFRATLPS
Trigger: AGAGGGCAGTGTGGCTCTGAAGATTCGCCAGGTCCAGCCAAGTGACGATGGCCAGTACTGGTGCCGCTTCCA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025198.15
ENSMUST00000178562.2
CDS CCA 72 bp GGCTCAGGGAACCAGCCTCGGGACGTGCATACAAGCTaGACCTCTCCTTCTCCGAGTCCCTCCACATGGATA +
Preference number: 6 (lower is better)
Translates to: GSGNQPRDVHTS*TSPSPSPSTWI
Trigger: TATCCATGTGGAGGGACTCGGAGAAGGAGAGGTCCAGCTTGTATGCACGTCCCGAGGCTGGTTCCCTGAGCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025198.15
ENSMUST00000178562.2
CDS CCA 72 bp CATGCCTCCATCTTTCAAGACCTCCCTGGTGATCCGTaGGGTGGAACCCACCGCCATCACCTGCACATCCAC +
Preference number: 6 (lower is better)
Translates to: HASIFQDLPGDP*GGTHRHHLHIH
Trigger: GTGGATGTGCAGGTGATGGCGGTGGGTTCCACCCCACGGATCACCAGGGAGGTCTTGAAAGATGGAGGCATG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025198.15
ENSMUST00000178562.2
CDS CAA 72 bp GGGAAGATCCTAGAGCAGCCACTTGGAGTAGCACGCTaGTCTCTCTCCAGTAGTCCCCCTCCTGGAAGCGGC +
Preference number: 6 (lower is better)
Translates to: GKILEQPLGVAR*SLSSSPPPGSG
Trigger: GCCGCTTCCAGGAGGGGGACTACTGGAGAGAGACAAGCGTGCTACTCCAAGTGGCTGCTCTAGGATCTTCCC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000025198.15
ENSMUST00000178562.2
CDS GCA 72 bp GGCCGTGGGAACCACCCATCAGACGTACACCTCAGCTaGATGCCTCCATCTTTCAAGACCTCCCTGGTGATC +
Preference number: 6 (lower is better)
Translates to: GRGNHPSDVHLS*MPPSFKTSLVI
Trigger: GATCACCAGGGAGGTCTTGAAAGATGGAGGCATGCAGCTGAGGTGTACGTCTGATGGGTGGTTCCCACGGCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025198.15
ENSMUST00000178562.2
CDS CCA 72 bp GAATGTCCGATTACGCTAACGGAAGCCAGTTCGGTCTaGAGCCTCTCTGACAGAGCGATGGTGGCCTCCTGG +
Preference number: 6 (lower is better)
Translates to: ECPITLTEASSV*SLSDRAMVASW
Trigger: CCAGGAGGCCACCATCGCTCTGTCAGAGAGGCTCCAGACCGAACTGGCTTCCGTTAGCGTAATCGGACATTC
58% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025198.15
CDS GCA 72 bp AAACTCATCAACTTTTCTCCCCAGATGCCTTCCCAGTaGACCTCAGGCTCAGGGAACCAGCCTCGGGACGTG +
Preference number: 6 (lower is better)
Translates to: KLINFSPQMPSQ*TSGSGNQPRDV
Trigger: CACGTCCCGAGGCTGGTTCCCTGAGCCTGAGGTGCACTGGGAAGGCATCTGGGGAGAAAAGTTGATGAGTTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000025198.15
ENSMUST00000178562.2
CDS CCA 72 bp TTGGAGTCTGAGAGAGGGAAACGGGCTGTTTTCTCCTaGCCCAGAGGGAGGCTGATGGAGCAGGTCACATTC +
Preference number: 6 (lower is better)
Translates to: LESERGKRAVFS*PRGRLMEQVTF
Trigger: GAATGTGACCTGCTCCATCAGCCTCCCTCTGGGCCAGGAGAAAACAGCCCGTTTCCCTCTCTCAGACTCCAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025198.15
ENSMUST00000178562.2
CDS GCA 72 bp TTCTACCATCTGCTCTCCAGCCACGTGGGTGCCATTTaGATACACGTGGACTGCAGGGTAATAGCGGGATCG +
Preference number: 6 (lower is better)
Translates to: FYHLLSSHVGAI*IHVDCRVIAGS
Trigger: CGATCCCGCTATTACCCTGCAGTCCACGTGTATGCAAATGGCACCCACGTGGCTGGAGAGCAGATGGTAGAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025198.15
ENSMUST00000178562.2
CDS CAA 90 bp AGAGGCAGCACCACAACAGGCAGGGTCATCCATAGCAAAGCTATCTaGGAGTCTGAGAGAGGGAAACGGGCTGTTTTCTCCTGGCCCAGA +
Preference number: 6 (lower is better)
Translates to: RGSTTTGRVIHSKAI*ESERGKRAVFSWPR
Trigger: TCTGGGCCAGGAGAAAACAGCCCGTTTCCCTCTCTCAGACTCCAAGATAGCTTTGCTATGGATGACCCTGCCTGTTGTGGTGCTGCCTCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025198.15
ENSMUST00000178562.2
CDS CAA 72 bp GGACCTCTCCTTCTCCGAGTCCCTCCACATGGATATTaGGGGAAGATCCTAGAGCAGCCACTTGGAGTAGCA +
Preference number: 6 (lower is better)
Translates to: GPLLLRVPPHGY*GKILEQPLGVA
Trigger: TGCTACTCCAAGTGGCTGCTCTAGGATCTTCCCCAAATATCCATGTGGAGGGACTCGGAGAAGGAGAGGTCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025198.15
ENSMUST00000178562.2
CDS CAA 72 bp ATTCTACCATCTGCTCTCCAGCCACGTGGGTGCCATTaGCATACACGTGGACTGCAGGGTAATAGCGGGATC +
Preference number: 6 (lower is better)
Translates to: ILPSALQPRGCH*HTRGLQGNSGI
Trigger: GATCCCGCTATTACCCTGCAGTCCACGTGTATGCAAATGGCACCCACGTGGCTGGAGAGCAGATGGTAGAAT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025198.15
ENSMUST00000178562.2
CDS CAA 72 bp CAGAAGTGTCTCCACCTGGAACAGCTCCTGGCTCCCTaGCTGAAAGGCCTCGGAAAACGATGGCATTGTCTT +
Preference number: 6 (lower is better)
Translates to: QKCLHLEQLLAP*LKGLGKRWHCL
Trigger: AAGACAATGCCATCGTTTTCCGAGGCCTTTCAGCAAGGGAGCCAGGAGCTGTTCCAGGTGGAGACACTTCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025198.15
ENSMUST00000178562.2
CDS TCA 72 bp CACCGGTACTGCCCTTCATCCGAAGTTCTGGCATTGTaGATTTGCAGGGTCAGTTTTCCCTCGTGGATGGCA +
Preference number: 6 (lower is better)
Translates to: HRYCPSSEVLAL*ICRVSFPSWMA
Trigger: TGCCATCCACGAGGGAAAACTGACCCTGCAAATTCACAATGCCAGAACTTCGGATGAAGGGCAGTACCGGTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025198.15
ENSMUST00000178562.2
CDS TCA 72 bp TACGCTAACGGAAGGCAATTTAAAGAAGAGCCTTGCTaGCAGAGCGATGGTGGCCTCCTGGGTCTCTCTGAG +
Preference number: 6 (lower is better)
Translates to: YANGRQFKEEPC*QSDGGLLGLSE
Trigger: CTCAGAGAGACCCAGGAGGCCACCATCGCTCTGTCAGCAAGGCTCTTCTTTAAATTGCCTTCCGTTAGCGTA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000178562.2
CDS CCA 72 bp GATTGGGAGGTTAGGACCGACCACTCTGAAGTCATCTaGGTGCTTTATAGTCAGCAGGACGAAGAGGAAGGA +
Preference number: 6 (lower is better)
Translates to: DWEVRTDHSEVI*VLYSQQDEEEG
Trigger: TCCTTCCTCTTCGTCCTGCTGACTATAAAGCACCCAGATGACTTCAGAGTGGTCGGTCCTAACCTCCCAATC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025198.15
ENSMUST00000178562.2
CDS TCA 72 bp CGCCGCCTGTGGTTTTCGTCATTCTTGTTATTTTCCTaGTTGCTGCTGTGTGTTTGTTCATTGGTCCGCCGC +
Preference number: 6 (lower is better)
Translates to: RRLWFSSFLLFS*LLLCVCSLVRR
Trigger: GCGGCGGACCAATGAACAAACACACAGCAGCAATCAGGAAAATAACAAGAATGACGAAAACCACAGGCGGCG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000025198.15
ENSMUST00000178562.2
CDS CAA 72 bp GTACTGCCCTTCATCCGAAGTTCTGGCATTGTGAATTaGCAGGGTCAGTTTTCCCTCGTGGATGGCATCAGT +
Preference number: 6 (lower is better)
Translates to: VLPFIRSSGIVN*QGQFSLVDGIS
Trigger: ACTGATGCCATCCACGAGGGAAAACTGACCCTGCAAATTCACAATGCCAGAACTTCGGATGAAGGGCAGTAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025198.15
ENSMUST00000178562.2
CDS CAA 90 bp GTGGTTTTCGTCATTCTTGTTATTTTCCTGATTGCTGCTGTGTGTTaGTTCATTGGTCCGCCGCCACCGTTTCACCTTGATCAGGTCGAT +
Preference number: 6 (lower is better)
Translates to: VVFVILVIFLIAAVC*FIGPPPPFHLDQVD
Trigger: ATCGACCTGATCAAGGTGAAACGGTGGCGGCGGACCAATGAACAAACACACAGCAGCAATCAGGAAAATAACAAGAATGACGAAAACCAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000025198.15
ENSMUST00000178562.2
CDS GCA 72 bp TGTGGTTTTCGTCATTCTTGTTATTTTCCTGATTGCTaGTGTGTGTTTGTTCATTGGTCCGCCGCCACCGTT +
Preference number: 6 (lower is better)
Translates to: CGFRHSCYFPDC*CVFVHWSAATV
Trigger: AACGGTGGCGGCGGACCAATGAACAAACACACAGCAGCAATCAGGAAAATAACAAGAATGACGAAAACCACA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000025198.15
ENSMUST00000178562.2