RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for BTLA (Mus musculus)

Ensembl gene IDs: ENSMUSG00000052013

Ensembl transcript IDs: ENSMUST00000063654.6, ENSMUST00000102802.10

Found 100 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp CATCCTTGTAAAAAGCTGGGCATGAGCAAATATAGTCTAGCAATGTaGGGGTCAGGGATGGGAGGATCCATCGCTGGCTTGCTGCTTGCT +
Preference number: 1 (lower is better)
Translates to: HPCKKLGMSKYSLAM*GSGMGGSIAGLLLA
Trigger: AGCAAGCAGCAAGCCAGCGATGGATCCTCCCATCCCTGACCCCCACATTGCTAGACTATATTTGCTCATGCCCAGCTTTTTACAAGGATG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000102802.10
3UTR TCA 90 bp AAAACATTGTTTGTTGTTCTAGATTCAGGGAACTGGAACCCGAGGTaGGCAGTAGGTGAGAAAAGCTGTGTAGTAAGGCCTCTTTATTCA +
Preference number: 1 (lower is better)
Translates to: KTLFVVLDSGNWNPR*AVGEKSCVVRPLYS
Trigger: TGAATAAAGAGGCCTTACTACACAGCTTTTCTCACCTACTGCTCACCTCGGGTTCCAGTTCCCTGAATCTAGAACAACAAACAATGTTTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000102802.10
3UTR GCA 90 bp GTCCCTACGGATCAACTCAATATTCAAGATTCTCCTTTCATAAATTaGCCTTTGAGCTTGCTCTCACGTAAAGCAAAAGGTGGGCTAAAA +
Preference number: 1 (lower is better)
Translates to: VPTDQLNIQDSPFIN*PLSLLSRKAKGGLK
Trigger: TTTTAGCCCACCTTTTGCTTTACGTGAGAGCAAGCTCAAAGGGCAATTTATGAAAGGAGAATCTTGAATATTGAGTTGATCCGTAGGGAC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102802.10
3UTR GCA 90 bp CTGATTCACTTCCTCAGAATCAAGAAACAGGCATTAATGAATGCATaGCAGTCCCTACGGATCAACTCAATATTCAAGATTCTCCTTTCA +
Preference number: 1 (lower is better)
Translates to: LIHFLRIKKQALMNA*QSLRINSIFKILLS
Trigger: TGAAAGGAGAATCTTGAATATTGAGTTGATCCGTAGGGACTGGCATGCATTCATTAATGCCTGTTTCTTGATTCTGAGGAAGTGAATCAG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102802.10
3UTR TCA 90 bp CAACTCCCTTCCATTCTCACCAGTCTACGTGTTATTTTCTATAAATaGCTCATTTTCTCTAGTACTTTGCACCTTCTAAGCAAACTAAAA +
Preference number: 1 (lower is better)
Translates to: QLPSILTSLRVIFYK*LIFSSTLHLLSKLK
Trigger: TTTTAGTTTGCTTAGAAGGTGCAAAGTACTAGAGAAAATGAGTCATTTATAGAAAATAACACGTAGACTGGTGAGAATGGAAGGGAGTTG
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000102802.10
3UTR CAA 90 bp AGTCTAGCAATGTGGGGGTCAGGGATGGGAGGATCCATCGCTGGCTaGCTGCTTGCTAGCAGAGCTCCAGGTTCAATGAGAGACCTTCCC +
Preference number: 2 (lower is better)
Translates to: SLAMWGSGMGGSIAG*LLASRAPGSMRDLP
Trigger: GGGAAGGTCTCTCATTGAACCTGGAGCTCTGCTAGCAAGCAGCAAGCCAGCGATGGATCCTCCCATCCCTGACCCCCACATTGCTAGACT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000102802.10
3UTR-3UTR TCA 90 bp TTCCCAGGGAAGAGTCTGTCTTGTACAAAACTCTCCCAAAGTTTTCAGGAGAAATCCAGACAGAGGTATTaGCAGGCACTCATGCAGTGT +
Preference number: 2 (lower is better)
Translates to: FPGKSLSCTKLSQSFQEKSRQRY*QALMQC
Trigger: ACACTGCATGAGTGCCTGTCAATACCTCTGTCTGGA...TTTCTCCTGAAAACTTTGGGAGAGTTTTGTACAAGACAGACTCTTCCCTGGGAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000063654.6
ENSMUST00000102802.10
3UTR-3UTR GCA 90 bp AATATGAGTTTTCCCAGGGAAGAGTCTGTCTTGTACAAAACTCTCCCAAAGTTTATTGACAGGCACTCATaGAGTGTAGGCTGCCTGGCT +
Preference number: 2 (lower is better)
Translates to: NMSFPREESVLYKTLPKFIDRHS*SVGCLA
Trigger: AGCCAGGCAGCCTACACTGCATGAGTGCCTGTCAAT...AAACTTTGGGAGAGTTTTGTACAAGACAGACTCTTCCCTGGGAAAACTCATATT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000063654.6
ENSMUST00000102802.10
3UTR-3UTR TCA 90 bp CCAGCACAGAGCATCTTAATTGAAACTTTCCAGGTTGAAGGTTATTTGAAACTGTCCAGACAGAGGTATTaGCAGGCACTCATGCAGTGT +
Preference number: 2 (lower is better)
Translates to: PAQSILIETFQVEGYLKLSRQRY*QALMQC
Trigger: ACACTGCATGAGTGCCTGTCAATACCTCTGTCTGGA...CAGTTTCAAATAACCTTCAACCTGGAAAGTTTCAATTAAGATGCTCTGTGCTGG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063654.6
ENSMUST00000102802.10
3UTR-3UTR GCA 90 bp GTAAGTCTGTTTGGTAGTTCCAAAGAAAATATTGAATTCACACATTGGGTACGAATTGACAGGCACTCATaGAGTGTAGGCTGCCTGGCT +
Preference number: 2 (lower is better)
Translates to: VSLFGSSKENIEFTHWVRIDRHS*SVGCLA
Trigger: AGCCAGGCAGCCTACACTGCATGAGTGCCTGTCAAT...TCGTACCCAATGTGTGAATTCAATATTTTCTTTGGAACTACCAAACAGACTTAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000063654.6
ENSMUST00000102802.10
3UTR CAA 90 bp TTGCTCTCACGTAAAGCAAAAGGTGGGCTAAAAGTTCGCTCTAGATaGATAATATATCCATTCCCATGGACACTTGTTCATAGGCCCATA +
Preference number: 2 (lower is better)
Translates to: LLSRKAKGGLKVRSR*IIYPFPWTLVHRPI
Trigger: TATGGGCCTATGAACAAGTGTCCATGGGAATGGATATATTATCAATCTAGAGCGAACTTTTAGCCCACCTTTTGCTTTACGTGAGAGCAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000102802.10
3UTR-3UTR GCA 90 bp ACATGTCTGAAAACATTGTTTGTTGTTCTAGATTCAGGGAACTGGAACCCGAGGGCACACCCACATATATaGATGCAATTACATAGACAG +
Preference number: 2 (lower is better)
Translates to: TCLKTLFVVLDSGNWNPRAHPHI*MQLHRQ
Trigger: CTGTCTATGTAATTGCATGCATATATGTGGGTGTGC...CCTCGGGTTCCAGTTCCCTGAATCTAGAACAACAAACAATGTTTTCAGACATGT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102802.10
3UTR-3UTR CCA 90 bp ACATGTCTGAAAACATTGTTTGTTGTTCTAGATTCAGGGAACTGGAACCCGAGGGCACAGCAAAAGGACTaGTTTCTCTTGTCTTATTTC +
Preference number: 2 (lower is better)
Translates to: TCLKTLFVVLDSGNWNPRAQQKD*FLLSYF
Trigger: GAAATAAGACAAGAGAAACCAGTCCTTTTGCTGTGC...CCTCGGGTTCCAGTTCCCTGAATCTAGAACAACAAACAATGTTTTCAGACATGT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000102802.10
3UTR CAA 90 bp CAACTCAATATTCAAGATTCTCCTTTCATAAATTGCCCTTTGAGCTaGCTCTCACGTAAAGCAAAAGGTGGGCTAAAAGTTCGCTCTAGA +
Preference number: 2 (lower is better)
Translates to: QLNIQDSPFINCPLS*LSRKAKGGLKVRSR
Trigger: TCTAGAGCGAACTTTTAGCCCACCTTTTGCTTTACGTGAGAGCAAGCTCAAAGGGCAATTTATGAAAGGAGAATCTTGAATATTGAGTTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000102802.10
3UTR CAA 90 bp ATTTTCCTTTTAAAGCCGGAGACAATTCTGAAAGATTTGCTTAAGTaGCCTGTTGATCTGATAAGAGAGACAGAGTGCAGTACTCATCCC +
Preference number: 2 (lower is better)
Translates to: IFLLKPETILKDLLK*PVDLIRETECSTHP
Trigger: GGGATGAGTACTGCACTCTGTCTCTCTTATCAGATCAACAGGCAACTTAAGCAAATCTTTCAGAATTGTCTCCGGCTTTAAAAGGAAAAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000102802.10
3UTR-3UTR GCA 90 bp TACATTCTCAACTCCCTTCCATTCTCACCAGTCTACGTGTTATTTTCTATAAATACAGGCATTAATGAATaGATGCCAGTCCCTACGGAT +
Preference number: 2 (lower is better)
Translates to: YILNSLPFSPVYVLFSINTGINE*MPVPTD
Trigger: ATCCGTAGGGACTGGCATGCATTCATTAATGCCTGT...ATTTATAGAAAATAACACGTAGACTGGTGAGAATGGAAGGGAGTTGAGAATGTA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102802.10
3UTR-3UTR TCA 90 bp CATGCCAGTCCCTACGGATCAACTCAATATTCAAGATTCTCCTTTCATAAATTGTTGTCTTATCATGACTaGCTGAGAGCATACAATCAT +
Preference number: 2 (lower is better)
Translates to: HASPYGSTQYSRFSFHKLLSYHD*LRAYNH
Trigger: ATGATTGTATGCTCTCAGTCAGTCATGATAAGACAA...CAATTTATGAAAGGAGAATCTTGAATATTGAGTTGATCCGTAGGGACTGGCATG
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102802.10
3UTR-3UTR TCA 90 bp CTAGAAGTGGTTGTAACATGTCTGAAAACATTGTTTGTTGTTCTAGATTCAGGGTTAATCCAGCAGCATTaGATCACATTCATGTGCGTT +
Preference number: 2 (lower is better)
Translates to: LEVVVTCLKTLFVVLDSGLIQQH*ITFMCV
Trigger: AACGCACATGAATGTGATTCAATGCTGCTGGATTAA...CCCTGAATCTAGAACAACAAACAATGTTTTCAGACATGTTACAACCACTTCTAG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102802.10
3UTR-3UTR GCA 90 bp CTAGAAGTGGTTGTAACATGTCTGAAAACATTGTTTGTTGTTCTAGATTCAGGGTCTCCTTTCATAAATTaGCCTTTGAGCTTGCTCTCA +
Preference number: 2 (lower is better)
Translates to: LEVVVTCLKTLFVVLDSGSPFIN*PLSLLS
Trigger: TGAGAGCAAGCTCAAAGGGCAATTTATGAAAGGAGA...CCCTGAATCTAGAACAACAAACAATGTTTTCAGACATGTTACAACCACTTCTAG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102802.10
3UTR-3UTR CCA 90 bp TACATTCTCAACTCCCTTCCATTCTCACCAGTCTACGTGTTATTTTCTATAAATCGACATGGTGCGACATaGTCAATTTTAAAAGCCCTA +
Preference number: 2 (lower is better)
Translates to: YILNSLPFSPVYVLFSINRHGAT*SILKAL
Trigger: TAGGGCTTTTAAAATTGACCATGTCGCACCATGTCG...ATTTATAGAAAATAACACGTAGACTGGTGAGAATGGAAGGGAGTTGAGAATGTA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000102802.10
3UTR-3UTR CCA 90 bp TACATTCTCAACTCCCTTCCATTCTCACCAGTCTACGTGTTATTTTCTATAAATATATATCCATTCCCATaGACACTTGTTCATAGGCCC +
Preference number: 2 (lower is better)
Translates to: YILNSLPFSPVYVLFSINIYPFP*TLVHRP
Trigger: GGGCCTATGAACAAGTGTCCATGGGAATGGATATAT...ATTTATAGAAAATAACACGTAGACTGGTGAGAATGGAAGGGAGTTGAGAATGTA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102802.10
3UTR CCA 72 bp AAAAAGCTGGGCATGAGCAAATATAGTCTAGCAATGTaGGGGTCAGGGATGGGAGGATCCATCGCTGGCTTG +
Preference number: 3 (lower is better)
Translates to: KKLGMSKYSLAM*GSGMGGSIAGL
Trigger: CAAGCCAGCGATGGATCCTCCCATCCCTGACCCCCACATTGCTAGACTATATTTGCTCATGCCCAGCTTTTT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000102802.10
3UTR TCA 72 bp TTTGTTGTTCTAGATTCAGGGAACTGGAACCCGAGGTaGGCAGTAGGTGAGAAAAGCTGTGTAGTAAGGCCT +
Preference number: 3 (lower is better)
Translates to: FVVLDSGNWNPR*AVGEKSCVVRP
Trigger: AGGCCTTACTACACAGCTTTTCTCACCTACTGCTCACCTCGGGTTCCAGTTCCCTGAATCTAGAACAACAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102802.10
3UTR GCA 72 bp CTTAAGTTGCCTGTTGATCTGATAAGAGAGACAGAGTaGAGTACTCATCCCCCTCCCATCCTTCCTGTTTCT +
Preference number: 3 (lower is better)
Translates to: LKLPVDLIRETE*STHPPPILPVS
Trigger: AGAAACAGGAAGGATGGGAGGGGGATGAGTACTGCACTCTGTCTCTCTTATCAGATCAACAGGCAACTTAAG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000102802.10
3UTR-3UTR CAA 90 bp CTTACTTTCTCAATCAAGCCAGCTGAAGGTGAGCATCTCACTGGTGGGGATAAGCAGGTTGAAGGTTATTaGAAACTGAAGGTCCAGACA +
Preference number: 3 (lower is better)
Translates to: LTFSIKPAEGEHLTGGDKQVEGY*KLKVQT
Trigger: TGTCTGGACCTTCAGTTTCAAATAACCTTCAACCTG...CTTATCCCCACCAGTGAGATGCTCACCTTCAGCTGGCTTGATTGAGAAAGTAAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000063654.6
ENSMUST00000102802.10
3UTR CCA 72 bp CACTACCACGCTGATTGCAAATCCACTCACTATATGTaGATGAGCCCTTTACTACCTACCTTACTTTCTCAA +
Preference number: 3 (lower is better)
Translates to: HYHADCKSTHYM*MSPLLPTLLSQ
Trigger: TTGAGAAAGTAAGGTAGGTAGTAAAGGGCTCATCCACATATAGTGAGTGGATTTGCAATCAGCGTGGTAGTG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102802.10
3UTR-3UTR CAA 90 bp AAAAAGCACAGCAAAAGGACTGGTTTCTCTTGTCTTATTTCCAGGCGTCACATCTTCTCCTTTCATAAATaGCCCTTTGAGCTTGCTCTC +
Preference number: 3 (lower is better)
Translates to: KKHSKRTGFSCLISRRHIFSFHK*PFELAL
Trigger: GAGAGCAAGCTCAAAGGGCAATTTATGAAAGGAGAA...GATGTGACGCCTGGAAATAAGACAAGAGAAACCAGTCCTTTTGCTGTGCTTTTT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000102802.10
3UTR CCA 72 bp ATTGAATTCACACATTGGGTACGACATGGTGCGACATaGTCAATTTTAAAAGCCCTATTATTCTGCTATTCG +
Preference number: 3 (lower is better)
Translates to: IEFTHWVRHGAT*SILKALLFCYS
Trigger: CGAATAGCAGAATAATAGGGCTTTTAAAATTGACCATGTCGCACCATGTCGTACCCAATGTGTGAATTCAAT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000063654.6
ENSMUST00000102802.10
3UTR-3UTR CAA 90 bp CCAGTCTACGTGTTATTTTCTATAAATGACTCATTTTCTCTAGTACTTTGCACCCAGGTTGAAGGTTATTaGAAACTGAAGGTCCAGACA +
Preference number: 3 (lower is better)
Translates to: PVYVLFSINDSFSLVLCTQVEGY*KLKVQT
Trigger: TGTCTGGACCTTCAGTTTCAAATAACCTTCAACCTG...GGTGCAAAGTACTAGAGAAAATGAGTCATTTATAGAAAATAACACGTAGACTGG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000102802.10
3UTR GCA 72 bp GATCAACTCAATATTCAAGATTCTCCTTTCATAAATTaGCCTTTGAGCTTGCTCTCACGTAAAGCAAAAGGT +
Preference number: 3 (lower is better)
Translates to: DQLNIQDSPFIN*PLSLLSRKAKG
Trigger: ACCTTTTGCTTTACGTGAGAGCAAGCTCAAAGGGCAATTTATGAAAGGAGAATCTTGAATATTGAGTTGATC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102802.10
3UTR CCA 72 bp TTTGGTAGTTCCAAAGAAAATATTGAATTCACACATTaGGTACGACATGGTGCGACATGGTCAATTTTAAAA +
Preference number: 3 (lower is better)
Translates to: FGSSKENIEFTH*VRHGATWSILK
Trigger: TTTTAAAATTGACCATGTCGCACCATGTCGTACCCAATGTGTGAATTCAATATTTTCTTTGGAACTACCAAA
35% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000063654.6
ENSMUST00000102802.10
3UTR CAA 72 bp ATGTGGGGGTCAGGGATGGGAGGATCCATCGCTGGCTaGCTGCTTGCTAGCAGAGCTCCAGGTTCAATGAGA +
Preference number: 4 (lower is better)
Translates to: MWGSGMGGSIAG*LLASRAPGSMR
Trigger: TCTCATTGAACCTGGAGCTCTGCTAGCAAGCAGCAAGCCAGCGATGGATCCTCCCATCCCTGACCCCCACAT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000102802.10
CDS-3UTR TCA 90 bp CTTACTTTCTCAATCAAGCCAGCTGAAGGTGAGCATCTCACTGGTGGGGATAAGGATGGCAGTGCTTGGTaGTTTGTCCTGGAACTGGCT +
Preference number: 4 (lower is better)
Translates to: LTFSIKPAEGEHLTGGDKDGSAW*FVLELA
Trigger: AGCCAGTTCCAGGACAAATCACCAAGCACTGCCATC...CTTATCCCCACCAGTGAGATGCTCACCTTCAGCTGGCTTGATTGAGAAAGTAAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000063654.6
ENSMUST00000102802.10
CDS-3UTR TCA 90 bp TTACATAGACAGTTTATGTGTTTGCTCCAGTGGCTTCTAACTCAGGCCCAATCTCATGGTGGATGGTCCTaGGGCATTGGTGGCATCTGG +
Preference number: 4 (lower is better)
Translates to: LHRQFMCLLQWLLTQAQSHGGWS*GIGGIW
Trigger: CCAGATGCCACCAATGCCTCAGGACCATCCACCATG...AGATTGGGCCTGAGTTAGAAGCCACTGGAGCAAACACATAAACTGTCTATGTAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102802.10
CDS-3UTR CCA 90 bp TTACATAGACAGTTTATGTGTTTGCTCCAGTGGCTTCTAACTCAGGCCCAATCTCAGCCAAGTCCTGCCTaGCCTCTCTTCCATGGTGGA +
Preference number: 4 (lower is better)
Translates to: LHRQFMCLLQWLLTQAQSQPSPA*PLFHGG
Trigger: TCCACCATGGAAGAGAGGCCAGGCAGGACTTGGCTG...AGATTGGGCCTGAGTTAGAAGCCACTGGAGCAAACACATAAACTGTCTATGTAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102802.10
CDS-3UTR TCA 90 bp TCCAAAGAAAATATTGAATTCACACATTGGGTACGACATGGTGCGACATGGTCACATGGTGGATGGTCCTaGGGCATTGGTGGCATCTGG +
Preference number: 4 (lower is better)
Translates to: SKENIEFTHWVRHGATWSHGGWS*GIGGIW
Trigger: CCAGATGCCACCAATGCCTCAGGACCATCCACCATG...TGACCATGTCGCACCATGTCGTACCCAATGTGTGAATTCAATATTTTCTTTGGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000063654.6
ENSMUST00000102802.10
CDS-3UTR GCA 90 bp ACATGTCTGAAAACATTGTTTGTTGTTCTAGATTCAGGGAACTGGAACCCGAGGAAAGCAGCCAAGTCCTaGCTGGCCTCTCTTCCATGG +
Preference number: 4 (lower is better)
Translates to: TCLKTLFVVLDSGNWNPRKAAKS*LASLPW
Trigger: CCATGGAAGAGAGGCCAGGCAGGACTTGGCTGCTTT...CCTCGGGTTCCAGTTCCCTGAATCTAGAACAACAAACAATGTTTTCAGACATGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102802.10
CDS-3UTR GCA 90 bp CTTACTTTCTCAATCAAGCCAGCTGAAGGTGAGCATCTCACTGGTGGGGATAAGGTTAGTGTCCCTTCCTaGCAAGTCAGAAGGCTTCTT +
Preference number: 4 (lower is better)
Translates to: LTFSIKPAEGEHLTGGDKVSVPS*QVRRLL
Trigger: AAGAAGCCTTCTGACTTGGCAGGAAGGGACACTAAC...CTTATCCCCACCAGTGAGATGCTCACCTTCAGCTGGCTTGATTGAGAAAGTAAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000063654.6
ENSMUST00000102802.10
CDS-3UTR CCA 90 bp CCCTATTATTCTGCTATTCGTAATATGAGTTTTCCCAGGGAAGAGTCTGTCTTGCAGCCAAGTCCTGCCTaGCCTCTCTTCCATGGTGGA +
Preference number: 4 (lower is better)
Translates to: PYYSAIRNMSFPREESVLQPSPA*PLFHGG
Trigger: TCCACCATGGAAGAGAGGCCAGGCAGGACTTGGCTG...CAAGACAGACTCTTCCCTGGGAAAACTCATATTACGAATAGCAGAATAATAGGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000063654.6
ENSMUST00000102802.10
CDS-3UTR GCA 90 bp CTTACTTTCTCAATCAAGCCAGCTGAAGGTGAGCATCTCACTGGTGGGGATAAGTCTCACACAAATGGATaGATATTCTGTGGGTGCCTC +
Preference number: 4 (lower is better)
Translates to: LTFSIKPAEGEHLTGGDKSHTNG*IFCGCL
Trigger: GAGGCACCCACAGAATATGCATCCATTTGTGTGAGA...CTTATCCCCACCAGTGAGATGCTCACCTTCAGCTGGCTTGATTGAGAAAGTAAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000063654.6
ENSMUST00000102802.10
CDS-3UTR CCA 90 bp CTTACTTTCTCAATCAAGCCAGCTGAAGGTGAGCATCTCACTGGTGGGGATAAGATAACTCTCCTGTCCTaGCAGACTGTTTGGAATTCC +
Preference number: 4 (lower is better)
Translates to: LTFSIKPAEGEHLTGGDKITLLS*QTVWNS
Trigger: GGAATTCCAAACAGTCTGCCAGGACAGGAGAGTTAT...CTTATCCCCACCAGTGAGATGCTCACCTTCAGCTGGCTTGATTGAGAAAGTAAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000063654.6
ENSMUST00000102802.10
CDS-3UTR CCA 90 bp TTCCCAGGGAAGAGTCTGTCTTGTACAAAACTCTCCCAAAGTTTTCAGGAGAAAATGGTCCTGAGGCATTaGTGGCATCTGGGATGTCAG +
Preference number: 4 (lower is better)
Translates to: FPGKSLSCTKLSQSFQEKMVLRH*WHLGCQ
Trigger: CTGACATCCCAGATGCCACCAATGCCTCAGGACCAT...TTTCTCCTGAAAACTTTGGGAGAGTTTTGTACAAGACAGACTCTTCCCTGGGAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000063654.6
ENSMUST00000102802.10
CDS-3UTR GCA 90 bp TTCCCAGGGAAGAGTCTGTCTTGTACAAAACTCTCCCAAAGTTTTCAGGAGAAAAAGGAGCAGAAGCAATaGCCCCAAAGGAAGCAAGGT +
Preference number: 4 (lower is better)
Translates to: FPGKSLSCTKLSQSFQEKKEQKQ*PQRKQG
Trigger: ACCTTGCTTCCTTTGGGGGCATTGCTTCTGCTCCTT...TTTCTCCTGAAAACTTTGGGAGAGTTTTGTACAAGACAGACTCTTCCCTGGGAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENSMUST00000063654.6
ENSMUST00000102802.10
CDS-3UTR CCA 90 bp TTCCCAGGGAAGAGTCTGTCTTGTACAAAACTCTCCCAAAGTTTTCAGGAGAAACTCCAGAGGCCCAGATaGAGGATGAAGAATTCCCTA +
Preference number: 4 (lower is better)
Translates to: FPGKSLSCTKLSQSFQEKLQRPR*RMKNSL
Trigger: TAGGGAATTCTTCATCCTCCATCTGGGCCTCTGGAG...TTTCTCCTGAAAACTTTGGGAGAGTTTTGTACAAGACAGACTCTTCCCTGGGAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000063654.6
ENSMUST00000102802.10
CDS-3UTR CCA 90 bp AAAAAGCACAGCAAAAGGACTGGTTTCTCTTGTCTTATTTCCAGGCGTCACATCCTCCAGAGGCCCAGATaGAGGATGAAGAATTCCCTA +
Preference number: 4 (lower is better)
Translates to: KKHSKRTGFSCLISRRHILQRPR*RMKNSL
Trigger: TAGGGAATTCTTCATCCTCCATCTGGGCCTCTGGAG...GATGTGACGCCTGGAAATAAGACAAGAGAAACCAGTCCTTTTGCTGTGCTTTTT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000102802.10
CDS-3UTR CCA 90 bp AATATGAGTTTTCCCAGGGAAGAGTCTGTCTTGTACAAAACTCTCCCAAAGTTTCTGGCCTCTCTTCCATaGTGGATGGTCCTGAGGCAT +
Preference number: 4 (lower is better)
Translates to: NMSFPREESVLYKTLPKFLASLP*WMVLRH
Trigger: ATGCCTCAGGACCATCCACCATGGAAGAGAGGCCAG...AAACTTTGGGAGAGTTTTGTACAAGACAGACTCTTCCCTGGGAAAACTCATATT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000063654.6
ENSMUST00000102802.10
CDS-3UTR TCA 90 bp AATATGAGTTTTCCCAGGGAAGAGTCTGTCTTGTACAAAACTCTCCCAAAGTTTGATGGCAGTGCTTGGTaGTTTGTCCTGGAACTGGCT +
Preference number: 4 (lower is better)
Translates to: NMSFPREESVLYKTLPKFDGSAW*FVLELA
Trigger: AGCCAGTTCCAGGACAAATCACCAAGCACTGCCATC...AAACTTTGGGAGAGTTTTGTACAAGACAGACTCTTCCCTGGGAAAACTCATATT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000063654.6
ENSMUST00000102802.10
CDS-3UTR CCA 90 bp CCAGCACAGAGCATCTTAATTGAAACTTTCCAGGTTGAAGGTTATTTGAAACTGATGGTCCTGAGGCATTaGTGGCATCTGGGATGTCAG +
Preference number: 4 (lower is better)
Translates to: PAQSILIETFQVEGYLKLMVLRH*WHLGCQ
Trigger: CTGACATCCCAGATGCCACCAATGCCTCAGGACCAT...CAGTTTCAAATAACCTTCAACCTGGAAAGTTTCAATTAAGATGCTCTGTGCTGG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063654.6
ENSMUST00000102802.10
CDS-3UTR TCA 90 bp CTTACTTTCTCAATCAAGCCAGCTGAAGGTGAGCATCTCACTGGTGGGGATAAGAACAAAAACCGGAACTaGTTGATTTTCTTCCCAACT +
Preference number: 4 (lower is better)
Translates to: LTFSIKPAEGEHLTGGDKNKNRN*LIFFPT
Trigger: AGTTGGGAAGAAAATCAATCAGTTCCGGTTTTTGTT...CTTATCCCCACCAGTGAGATGCTCACCTTCAGCTGGCTTGATTGAGAAAGTAAG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000063654.6
ENSMUST00000102802.10
CDS-3UTR GCA 90 bp GTAAGTCTGTTTGGTAGTTCCAAAGAAAATATTGAATTCACACATTGGGTACGAAAAGCAGCCAAGTCCTaGCTGGCCTCTCTTCCATGG +
Preference number: 4 (lower is better)
Translates to: VSLFGSSKENIEFTHWVRKAAKS*LASLPW
Trigger: CCATGGAAGAGAGGCCAGGCAGGACTTGGCTGCTTT...TCGTACCCAATGTGTGAATTCAATATTTTCTTTGGAACTACCAAACAGACTTAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000063654.6
ENSMUST00000102802.10
CDS-3UTR CCA 90 bp GTAAGTCTGTTTGGTAGTTCCAAAGAAAATATTGAATTCACACATTGGGTACGACTGGCCTCTCTTCCATaGTGGATGGTCCTGAGGCAT +
Preference number: 4 (lower is better)
Translates to: VSLFGSSKENIEFTHWVRLASLP*WMVLRH
Trigger: ATGCCTCAGGACCATCCACCATGGAAGAGAGGCCAG...TCGTACCCAATGTGTGAATTCAATATTTTCTTTGGAACTACCAAACAGACTTAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000063654.6
ENSMUST00000102802.10
CDS-3UTR CCA 90 bp CCCTATTATTCTGCTATTCGTAATATGAGTTTTCCCAGGGAAGAGTCTGTCTTGTGGATGCATATTCTGTaGGTGCCTCCTGCATGTTGT +
Preference number: 4 (lower is better)
Translates to: PYYSAIRNMSFPREESVLWMHIL*VPPACC
Trigger: ACAACATGCAGGAGGCACCCACAGAATATGCATCCA...CAAGACAGACTCTTCCCTGGGAAAACTCATATTACGAATAGCAGAATAATAGGG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000063654.6
ENSMUST00000102802.10
CDS-3UTR CCA 90 bp TCCAAAGAAAATATTGAATTCACACATTGGGTACGACATGGTGCGACATGGTCAGGCATTGGTGGCATCTaGGATGTCAGATACTGTTAT +
Preference number: 4 (lower is better)
Translates to: SKENIEFTHWVRHGATWSGIGGI*DVRYCY
Trigger: ATAACAGTATCTGACATCCCAGATGCCACCAATGCC...TGACCATGTCGCACCATGTCGTACCCAATGTGTGAATTCAATATTTTCTTTGGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000063654.6
CDS-3UTR GCA 90 bp TCCAAAGAAAATATTGAATTCACACATTGGGTACGACATGGTGCGACATGGTCAAATTCAGATTCATCCTaGATGCTAGACCAGGGATCA +
Preference number: 4 (lower is better)
Translates to: SKENIEFTHWVRHGATWSNSDSS*MLDQGS
Trigger: TGATCCCTGGTCTAGCATGCAGGATGAATCTGAATT...TGACCATGTCGCACCATGTCGTACCCAATGTGTGAATTCAATATTTTCTTTGGA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000063654.6
ENSMUST00000102802.10
CDS-3UTR GCA 90 bp AATATGAGTTTTCCCAGGGAAGAGTCTGTCTTGTACAAAACTCTCCCAAAGTTTTCTCACACAAATGGATaGATATTCTGTGGGTGCCTC +
Preference number: 4 (lower is better)
Translates to: NMSFPREESVLYKTLPKFSHTNG*IFCGCL
Trigger: GAGGCACCCACAGAATATGCATCCATTTGTGTGAGA...AAACTTTGGGAGAGTTTTGTACAAGACAGACTCTTCCCTGGGAAAACTCATATT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000063654.6
ENSMUST00000102802.10
CDS-3UTR CCA 90 bp TCCAAAGAAAATATTGAATTCACACATTGGGTACGACATGGTGCGACATGGTCACTTGGTGATTTGTCCTaGAACTGGCTGGAATATCAA +
Preference number: 4 (lower is better)
Translates to: SKENIEFTHWVRHGATWSLGDLS*NWLEYQ
Trigger: TTGATATTCCAGCCAGTTCCAGGACAAATCACCAAG...TGACCATGTCGCACCATGTCGTACCCAATGTGTGAATTCAATATTTTCTTTGGA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000063654.6
ENSMUST00000102802.10
CDS-3UTR TCA 90 bp TTACATAGACAGTTTATGTGTTTGCTCCAGTGGCTTCTAACTCAGGCCCAATCTAACAAAAACCGGAACTaGTTGATTTTCTTCCCAACT +
Preference number: 4 (lower is better)
Translates to: LHRQFMCLLQWLLTQAQSNKNRN*LIFFPT
Trigger: AGTTGGGAAGAAAATCAATCAGTTCCGGTTTTTGTT...AGATTGGGCCTGAGTTAGAAGCCACTGGAGCAAACACATAAACTGTCTATGTAA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000102802.10
CDS-3UTR GCA 90 bp GTAAGTCTGTTTGGTAGTTCCAAAGAAAATATTGAATTCACACATTGGGTACGAGTTAGTGTCCCTTCCTaGCAAGTCAGAAGGCTTCTT +
Preference number: 4 (lower is better)
Translates to: VSLFGSSKENIEFTHWVRVSVPS*QVRRLL
Trigger: AAGAAGCCTTCTGACTTGGCAGGAAGGGACACTAAC...TCGTACCCAATGTGTGAATTCAATATTTTCTTTGGAACTACCAAACAGACTTAC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000063654.6
ENSMUST00000102802.10
CDS-3UTR CCA 90 bp ATCTTAATTGAAACTTTCCAGGTTGAAGGTTATTTGAAACTGAAGGTCCAGACATGGATGCATATTCTGTaGGTGCCTCCTGCATGTTGT +
Preference number: 4 (lower is better)
Translates to: ILIETFQVEGYLKLKVQTWMHIL*VPPACC
Trigger: ACAACATGCAGGAGGCACCCACAGAATATGCATCCA...TGTCTGGACCTTCAGTTTCAAATAACCTTCAACCTGGAAAGTTTCAATTAAGAT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063654.6
ENSMUST00000102802.10
3UTR CAA 72 bp CTCAATATTCAAGATTCTCCTTTCATAAATTGCCCTTaGAGCTTGCTCTCACGTAAAGCAAAAGGTGGGCTA +
Preference number: 4 (lower is better)
Translates to: LNIQDSPFINCP*SLLSRKAKGGL
Trigger: TAGCCCACCTTTTGCTTTACGTGAGAGCAAGCTCAAAGGGCAATTTATGAAAGGAGAATCTTGAATATTGAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102802.10
CDS-3UTR TCA 90 bp CCAGCACAGAGCATCTTAATTGAAACTTTCCAGGTTGAAGGTTATTTGAAACTGCTGGTTGTTTCTCTCTaGTTGCAAGCTAATTGTCAA +
Preference number: 4 (lower is better)
Translates to: PAQSILIETFQVEGYLKLLVVSL*LQANCQ
Trigger: TTGACAATTAGCTTGCAATCAGAGAGAAACAACCAG...CAGTTTCAAATAACCTTCAACCTGGAAAGTTTCAATTAAGATGCTCTGTGCTGG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063654.6
ENSMUST00000102802.10
CDS-3UTR GCA 90 bp CAGAGCATCTTAATTGAAACTTTCCAGGTTGAAGGTTATTTGAAACTGAAGGTCAATTCAGATTCATCCTaGATGCTAGACCAGGGATCA +
Preference number: 4 (lower is better)
Translates to: QSILIETFQVEGYLKLKVNSDSS*MLDQGS
Trigger: TGATCCCTGGTCTAGCATGCAGGATGAATCTGAATT...GACCTTCAGTTTCAAATAACCTTCAACCTGGAAAGTTTCAATTAAGATGCTCTG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063654.6
ENSMUST00000102802.10
CDS-3UTR CCA 90 bp ATCTTAATTGAAACTTTCCAGGTTGAAGGTTATTTGAAACTGAAGGTCCAGACAATAACTCTCCTGTCCTaGCAGACTGTTTGGAATTCC +
Preference number: 4 (lower is better)
Translates to: ILIETFQVEGYLKLKVQTITLLS*QTVWNS
Trigger: GGAATTCCAAACAGTCTGCCAGGACAGGAGAGTTAT...TGTCTGGACCTTCAGTTTCAAATAACCTTCAACCTGGAAAGTTTCAATTAAGAT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063654.6
ENSMUST00000102802.10
CDS-3UTR CCA 90 bp GTAAGTCTGTTTGGTAGTTCCAAAGAAAATATTGAATTCACACATTGGGTACGAGATTTGTCCTGGAACTaGCTGGAATATCAACCAGGT +
Preference number: 4 (lower is better)
Translates to: VSLFGSSKENIEFTHWVRDLSWN*LEYQPG
Trigger: ACCTGGTTGATATTCCAGCCAGTTCCAGGACAAATC...TCGTACCCAATGTGTGAATTCAATATTTTCTTTGGAACTACCAAACAGACTTAC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000063654.6
ENSMUST00000102802.10
CDS-3UTR CCA 90 bp ATCTTAATTGAAACTTTCCAGGTTGAAGGTTATTTGAAACTGAAGGTCCAGACAGATTTGTCCTGGAACTaGCTGGAATATCAACCAGGT +
Preference number: 4 (lower is better)
Translates to: ILIETFQVEGYLKLKVQTDLSWN*LEYQPG
Trigger: ACCTGGTTGATATTCCAGCCAGTTCCAGGACAAATC...TGTCTGGACCTTCAGTTTCAAATAACCTTCAACCTGGAAAGTTTCAATTAAGAT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063654.6
ENSMUST00000102802.10
3UTR CAA 72 bp ATTCAAGATTCTCCTTTCATAAATTGCCCTTTGAGCTaGCTCTCACGTAAAGCAAAAGGTGGGCTAAAAGTT +
Preference number: 4 (lower is better)
Translates to: IQDSPFINCPLS*LSRKAKGGLKV
Trigger: AACTTTTAGCCCACCTTTTGCTTTACGTGAGAGCAAGCTCAAAGGGCAATTTATGAAAGGAGAATCTTGAAT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000102802.10
CDS-3UTR GCA 90 bp CCAGCACAGAGCATCTTAATTGAAACTTTCCAGGTTGAAGGTTATTTGAAACTGCAGATTGTTCCATTGTaGTTACACCAAGTCACATTA +
Preference number: 4 (lower is better)
Translates to: PAQSILIETFQVEGYLKLQIVPL*LHQVTL
Trigger: TAATGTGACTTGGTGTAAGCACAATGGAACAATCTG...CAGTTTCAAATAACCTTCAACCTGGAAAGTTTCAATTAAGATGCTCTGTGCTGG
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063654.6
ENSMUST00000102802.10
CDS-3UTR CCA 90 bp ATCTTAATTGAAACTTTCCAGGTTGAAGGTTATTTGAAACTGAAGGTCCAGACACTTGGTGATTTGTCCTaGAACTGGCTGGAATATCAA +
Preference number: 4 (lower is better)
Translates to: ILIETFQVEGYLKLKVQTLGDLS*NWLEYQ
Trigger: TTGATATTCCAGCCAGTTCCAGGACAAATCACCAAG...TGTCTGGACCTTCAGTTTCAAATAACCTTCAACCTGGAAAGTTTCAATTAAGAT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063654.6
ENSMUST00000102802.10
CDS-3UTR TCA 90 bp GTAAGTCTGTTTGGTAGTTCCAAAGAAAATATTGAATTCACACATTGGGTACGAAAAACCGGAACTGATTaGTTTTCTTCCCAACTAGTG +
Preference number: 4 (lower is better)
Translates to: VSLFGSSKENIEFTHWVRKTGTD*FSSQLV
Trigger: CACTAGTTGGGAAGAAAATCAATCAGTTCCGGTTTT...TCGTACCCAATGTGTGAATTCAATATTTTCTTTGGAACTACCAAACAGACTTAC
37% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000063654.6
ENSMUST00000102802.10
CDS-3UTR TCA 90 bp ATCTTAATTGAAACTTTCCAGGTTGAAGGTTATTTGAAACTGAAGGTCCAGACACTGGTTGTTTCTCTCTaGTTGCAAGCTAATTGTCAA +
Preference number: 4 (lower is better)
Translates to: ILIETFQVEGYLKLKVQTLVVSL*LQANCQ
Trigger: TTGACAATTAGCTTGCAATCAGAGAGAAACAACCAG...TGTCTGGACCTTCAGTTTCAAATAACCTTCAACCTGGAAAGTTTCAATTAAGAT
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063654.6
ENSMUST00000102802.10
CDS-3UTR GCA 90 bp ATCTTAATTGAAACTTTCCAGGTTGAAGGTTATTTGAAACTGAAGGTCCAGACACAGATTGTTCCATTGTaGTTACACCAAGTCACATTA +
Preference number: 4 (lower is better)
Translates to: ILIETFQVEGYLKLKVQTQIVPL*LHQVTL
Trigger: TAATGTGACTTGGTGTAAGCACAATGGAACAATCTG...TGTCTGGACCTTCAGTTTCAAATAACCTTCAACCTGGAAAGTTTCAATTAAGAT
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063654.6
ENSMUST00000102802.10
CDS-3UTR CCA 90 bp CAGAGCATCTTAATTGAAACTTTCCAGGTTGAAGGTTATTTGAAACTGAAGGTCTGTATTGGTTTAAAGTaGAGAACAAAAACCGGAACT +
Preference number: 4 (lower is better)
Translates to: QSILIETFQVEGYLKLKVCIGLK*RTKTGT
Trigger: AGTTCCGGTTTTTGTTCTCCACTTTAAACCAATACA...GACCTTCAGTTTCAAATAACCTTCAACCTGGAAAGTTTCAATTAAGATGCTCTG
36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000063654.6
ENSMUST00000102802.10
CDS CCA 90 bp GCAAGGTGTAAAGCAGCCAAGTCCTGCCTGGCCTCTCTTCCATGGTaGATGGTCCTGAGGCATTGGTGGCATCTGGGATGTCAGATACTG +
Preference number: 5 (lower is better)
Translates to: ARCKAAKSCLASLPW*MVLRHWWHLGCQIL
Trigger: CAGTATCTGACATCCCAGATGCCACCAATGCCTCAGGACCATCCACCATGGAAGAGAGGCCAGGCAGGACTTGGCTGCTTTACACCTTGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000063654.6
CDS CCA 90 bp GAAGCAAGGTGTAAAGCAGCCAAGTCCTGCCTGGCCTCTCTTCCATaGTGGATGGTCCTGAGGCATTGGTGGCATCTGGGATGTCAGATA +
Preference number: 5 (lower is better)
Translates to: EARCKAAKSCLASLP*WMVLRHWWHLGCQI
Trigger: TATCTGACATCCCAGATGCCACCAATGCCTCAGGACCATCCACCATGGAAGAGAGGCCAGGCAGGACTTGGCTGCTTTACACCTTGCTTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063654.6
ENSMUST00000102802.10
CDS CCA 90 bp GCAAGGTGTAAAGCAGCCAAGTCCTGCCTGGCCTCTCTTCCATGGTaGATGGTCCTGAGGCATTGGTGGCATCTGGGATGTCAGATATTA +
Preference number: 5 (lower is better)
Translates to: ARCKAAKSCLASLPW*MVLRHWWHLGCQIL
Trigger: TAATATCTGACATCCCAGATGCCACCAATGCCTCAGGACCATCCACCATGGAAGAGAGGCCAGGCAGGACTTGGCTGCTTTACACCTTGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102802.10
CDS GCA 90 bp TGTCCTGGAACTGGCTGGAATATCAACCAGGTTAGTGTCCCTTCCTaGCAAGTCAGAAGGCTTCTTTTCTTTCCCTTGGATCCTTTTCAG +
Preference number: 5 (lower is better)
Translates to: CPGTGWNINQVSVPS*QVRRLLFFPLDPFQ
Trigger: CTGAAAAGGATCCAAGGGAAAGAAAAGAAGCCTTCTGACTTGGCAGGAAGGGACACTAACCTGGTTGATATTCCAGCCAGTTCCAGGACA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000063654.6
ENSMUST00000102802.10
CDS CCA 90 bp TTCCTCTTAGTAGCTTTCTCACAAAGGATGCTCCAGAGGCCCAGATaGAGGATGAAGAATTCCCTAAATAACCGAGGAGTCCCAAGCATG +
Preference number: 5 (lower is better)
Translates to: FLLVAFSQRMLQRPR*RMKNSLNNRGVPSM
Trigger: CATGCTTGGGACTCCTCGGTTATTTAGGGAATTCTTCATCCTCCATCTGGGCCTCTGGAGCATCCTTTGTGAGAAAGCTACTAAGAGGAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063654.6
ENSMUST00000102802.10
CDS-3UTR CAA 90 bp TCCAAAGAAAATATTGAATTCACACATTGGGTACGACATGGTGCGACATGGTCAGATGGTCCTGAGGCATaGGTGGCATCTGGGATGTCA +
Preference number: 5 (lower is better)
Translates to: SKENIEFTHWVRHGATWSDGPEA*VASGMS
Trigger: TGACATCCCAGATGCCACCAATGCCTCAGGACCATC...TGACCATGTCGCACCATGTCGTACCCAATGTGTGAATTCAATATTTTCTTTGGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000063654.6
ENSMUST00000102802.10
CDS TCA 90 bp ATCCTGCATGCTAGACCAGGGATCATTATCATAAATTCCAGTTCCTaGTGGCAGTGCTTGGTGATTTGTCCTGGAACTGGCTGGAATATC +
Preference number: 5 (lower is better)
Translates to: ILHARPGIIIINSSS*WQCLVICPGTGWNI
Trigger: GATATTCCAGCCAGTTCCAGGACAAATCACCAAGCACTGCCATCAGGAACTGGAATTTATGATAATGATCCCTGGTCTAGCATGCAGGAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063654.6
ENSMUST00000102802.10
CDS-3UTR CAA 90 bp CTTACTTTCTCAATCAAGCCAGCTGAAGGTGAGCATCTCACTGGTGGGGATAAGACACAGATTGTTCCATaGTGCTTACACCAAGTCACA +
Preference number: 5 (lower is better)
Translates to: LTFSIKPAEGEHLTGGDKTQIVP*CLHQVT
Trigger: TGTGACTTGGTGTAAGCACAATGGAACAATCTGTGT...CTTATCCCCACCAGTGAGATGCTCACCTTCAGCTGGCTTGATTGAGAAAGTAAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000063654.6
ENSMUST00000102802.10
CDS-3UTR CAA 90 bp CATGCCAGTCCCTACGGATCAACTCAATATTCAAGATTCTCCTTTCATAAATTGGATGGTCCTGAGGCATaGGTGGCATCTGGGATGTCA +
Preference number: 5 (lower is better)
Translates to: HASPYGSTQYSRFSFHKLDGPEA*VASGMS
Trigger: TGACATCCCAGATGCCACCAATGCCTCAGGACCATC...CAATTTATGAAAGGAGAATCTTGAATATTGAGTTGATCCGTAGGGACTGGCATG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102802.10
CDS-3UTR CAA 90 bp AAAAAGCACAGCAAAAGGACTGGTTTCTCTTGTCTTATTTCCAGGCGTCACATCGGTGCCTCCTGCATGTaGTTTTCCTGTCTTGGATTC +
Preference number: 5 (lower is better)
Translates to: KKHSKRTGFSCLISRRHIGASCM*FSCLGF
Trigger: GAATCCAAGACAGGAAAACAACATGCAGGAGGCACC...GATGTGACGCCTGGAAATAAGACAAGAGAAACCAGTCCTTTTGCTGTGCTTTTT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000102802.10
CDS-3UTR CAA 90 bp CCCTATTATTCTGCTATTCGTAATATGAGTTTTCCCAGGGAAGAGTCTGTCTTGGGTGCCTCCTGCATGTaGTTTTCCTGTCTTGGATTC +
Preference number: 5 (lower is better)
Translates to: PYYSAIRNMSFPREESVLGASCM*FSCLGF
Trigger: GAATCCAAGACAGGAAAACAACATGCAGGAGGCACC...CAAGACAGACTCTTCCCTGGGAAAACTCATATTACGAATAGCAGAATAATAGGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000063654.6
ENSMUST00000102802.10
CDS-3UTR CAA 90 bp TTACATAGACAGTTTATGTGTTTGCTCCAGTGGCTTCTAACTCAGGCCCAATCTACACAGATTGTTCCATaGTGCTTACACCAAGTCACA +
Preference number: 5 (lower is better)
Translates to: LHRQFMCLLQWLLTQAQSTQIVP*CLHQVT
Trigger: TGTGACTTGGTGTAAGCACAATGGAACAATCTGTGT...AGATTGGGCCTGAGTTAGAAGCCACTGGAGCAAACACATAAACTGTCTATGTAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102802.10
CDS-3UTR CAA 90 bp GTAAGTCTGTTTGGTAGTTCCAAAGAAAATATTGAATTCACACATTGGGTACGAGCAGTGCTTGGTGATTaGTCCTGGAACTGGCTGGAA +
Preference number: 5 (lower is better)
Translates to: VSLFGSSKENIEFTHWVRAVLGD*SWNWLE
Trigger: TTCCAGCCAGTTCCAGGACAAATCACCAAGCACTGC...TCGTACCCAATGTGTGAATTCAATATTTTCTTTGGAACTACCAAACAGACTTAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000063654.6
ENSMUST00000102802.10
CDS-3UTR CAA 90 bp TACATTCTCAACTCCCTTCCATTCTCACCAGTCTACGTGTTATTTTCTATAAATGCAGTGCTTGGTGATTaGTCCTGGAACTGGCTGGAA +
Preference number: 5 (lower is better)
Translates to: YILNSLPFSPVYVLFSINAVLGD*SWNWLE
Trigger: TTCCAGCCAGTTCCAGGACAAATCACCAAGCACTGC...ATTTATAGAAAATAACACGTAGACTGGTGAGAATGGAAGGGAGTTGAGAATGTA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102802.10
CDS TCA 90 bp TCTGGGATGTCAGATACTGTTATTAGTGGGTGTTCTGAAGAGTTTTaGGTCCTTTCTGTCACATGGATGGTTACTGAATGGCTATTAATA +
Preference number: 5 (lower is better)
Translates to: SGMSDTVISGCSEEF*VLSVTWMVTEWLLI
Trigger: TATTAATAGCCATTCAGTAACCATCCATGTGACAGAAAGGACTCAAAACTCTTCAGAACACCCACTAATAACAGTATCTGACATCCCAGA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000063654.6
CDS TCA 90 bp ACAATGGTTCAAAGAAGCATAAACAATGCCCTGGTTGTTTCTCTCTaGTTGCAAGCTAATTGTCAATTCAGATTCATCCTGCATGCTAGA +
Preference number: 5 (lower is better)
Translates to: TMVQRSINNALVVSL*LQANCQFRFILHAR
Trigger: TCTAGCATGCAGGATGAATCTGAATTGACAATTAGCTTGCAATCAGAGAGAAACAACCAGGGCATTGTTTATGCTTCTTTGAACCATTGT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063654.6
ENSMUST00000102802.10
CDS TCA 90 bp GCATCTGGGATGTCAGATATTATTAGTGGGTGTTCTGAAGAGTTTTaGGTCCTTTCTGTCACATGGATGGTTACTGAATGGCTATTAATA +
Preference number: 5 (lower is better)
Translates to: ASGMSDIISGCSEEF*VLSVTWMVTEWLLI
Trigger: TATTAATAGCCATTCAGTAACCATCCATGTGACAGAAAGGACTCAAAACTCTTCAGAACACCCACTAATAATATCTGACATCCCAGATGC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102802.10
CDS TCA 90 bp GTCCTTTCTGTCACATGGATGGTTACTGAATGGCTATTAATAACTTaGGAATTGAAGTTTGTAGAACAGCTATACGACCCATTATCACTG +
Preference number: 5 (lower is better)
Translates to: VLSVTWMVTEWLLIT*ELKFVEQLYDPLSL
Trigger: CAGTGATAATGGGTCGTATAGCTGTTCTACAAACTTCAATTCTCAAGTTATTAATAGCCATTCAGTAACCATCCATGTGACAGAAAGGAC
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063654.6
ENSMUST00000102802.10
CDS-3UTR CAA 90 bp CAGAGCATCTTAATTGAAACTTTCCAGGTTGAAGGTTATTTGAAACTGAAGGTCCTTCTTTTCTTTCCCTaGGATCCTTTTCAGAAAGCA +
Preference number: 5 (lower is better)
Translates to: QSILIETFQVEGYLKLKVLLFFP*DPFQKA
Trigger: TGCTTTCTGAAAAGGATCCAAGGGAAAGAAAAGAAG...GACCTTCAGTTTCAAATAACCTTCAACCTGGAAAGTTTCAATTAAGATGCTCTG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000063654.6
ENSMUST00000102802.10
CDS CCA 72 bp CTGGCCTCTCTTCCATGGTGGATGGTCCTGAGGCATTaGTGGCATCTGGGATGTCAGATACTGTTATTAGTG +
Preference number: 6 (lower is better)
Translates to: LASLPWWMVLRH*WHLGCQILLLV
Trigger: CACTAATAACAGTATCTGACATCCCAGATGCCACCAATGCCTCAGGACCATCCACCATGGAAGAGAGGCCAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000063654.6
CDS CCA 72 bp CTGGCCTCTCTTCCATGGTGGATGGTCCTGAGGCATTaGTGGCATCTGGGATGTCAGATATTATTAGTGGGT +
Preference number: 6 (lower is better)
Translates to: LASLPWWMVLRH*WHLGCQILLVG
Trigger: ACCCACTAATAATATCTGACATCCCAGATGCCACCAATGCCTCAGGACCATCCACCATGGAAGAGAGGCCAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102802.10
CDS CCA 72 bp GTAGCTTTCTCACAAAGGATGCTCCAGAGGCCCAGATaGAGGATGAAGAATTCCCTAAATAACCGAGGAGTC +
Preference number: 6 (lower is better)
Translates to: VAFSQRMLQRPR*RMKNSLNNRGV
Trigger: GACTCCTCGGTTATTTAGGGAATTCTTCATCCTCCATCTGGGCCTCTGGAGCATCCTTTGTGAGAAAGCTAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063654.6
ENSMUST00000102802.10
CDS TCA 72 bp GCTAGACCAGGGATCATTATCATAAATTCCAGTTCCTaGTGGCAGTGCTTGGTGATTTGTCCTGGAACTGGC +
Preference number: 6 (lower is better)
Translates to: ARPGIIIINSSS*WQCLVICPGTG
Trigger: GCCAGTTCCAGGACAAATCACCAAGCACTGCCATCAGGAACTGGAATTTATGATAATGATCCCTGGTCTAGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063654.6
ENSMUST00000102802.10
CDS GCA 72 bp ACTGGCTGGAATATCAACCAGGTTAGTGTCCCTTCCTaGCAAGTCAGAAGGCTTCTTTTCTTTCCCTTGGAT +
Preference number: 6 (lower is better)
Translates to: TGWNINQVSVPS*QVRRLLFFPLD
Trigger: ATCCAAGGGAAAGAAAAGAAGCCTTCTGACTTGGCAGGAAGGGACACTAACCTGGTTGATATTCCAGCCAGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000063654.6
ENSMUST00000102802.10
CDS GCA 72 bp CTCACACAAATGGATGCATATTCTGTGGGTGCCTCCTaGATGTTGTTTTCCTGTCTTGGATTCCTTCCAATA +
Preference number: 6 (lower is better)
Translates to: LTQMDAYSVGAS*MLFSCLGFLPI
Trigger: TATTGGAAGGAATCCAAGACAGGAAAACAACATGCAGGAGGCACCCACAGAATATGCATCCATTTGTGTGAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000063654.6
ENSMUST00000102802.10
CDS TCA 72 bp TCAGATACTGTTATTAGTGGGTGTTCTGAAGAGTTTTaGGTCCTTTCTGTCACATGGATGGTTACTGAATGG +
Preference number: 6 (lower is better)
Translates to: SDTVISGCSEEF*VLSVTWMVTEW
Trigger: CCATTCAGTAACCATCCATGTGACAGAAAGGACTCAAAACTCTTCAGAACACCCACTAATAACAGTATCTGA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000063654.6
CDS TCA 72 bp CAAAGAAGCATAAACAATGCCCTGGTTGTTTCTCTCTaGTTGCAAGCTAATTGTCAATTCAGATTCATCCTG +
Preference number: 6 (lower is better)
Translates to: QRSINNALVVSL*LQANCQFRFIL
Trigger: CAGGATGAATCTGAATTGACAATTAGCTTGCAATCAGAGAGAAACAACCAGGGCATTGTTTATGCTTCTTTG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063654.6
ENSMUST00000102802.10
CDS TCA 72 bp ATGTCAGATATTATTAGTGGGTGTTCTGAAGAGTTTTaGGTCCTTTCTGTCACATGGATGGTTACTGAATGG +
Preference number: 6 (lower is better)
Translates to: MSDIISGCSEEF*VLSVTWMVTEW
Trigger: CCATTCAGTAACCATCCATGTGACAGAAAGGACTCAAAACTCTTCAGAACACCCACTAATAATATCTGACAT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102802.10