RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for BTG4 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000032056

Ensembl transcript IDs: ENSMUST00000114431.4, ENSMUST00000213117.2, ENSMUST00000213680.2

Found 77 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR-3UTR GCA 90 bp ATCATAGAACTCAAGCAGGTGAGAGACAGGAGGATCATAAATTGCAGGCTTGCCCCAGGTGCTTTCAAGTaGTCTGTGAATAAACAGGGC +
Preference number: 2 (lower is better)
Translates to: IIELKQVRDRRIINCRLAPGAFK*SVNKQG
Trigger: GCCCTGTTTATTCACAGAGCACTTGAAAGCACCTGG...GGCAAGCCTGCAATTTATGATCCTCCTGTCTCTCACCTGCTTGAGTTCTATGAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000213117.2
3UTR-3UTR GCA 90 bp ACGTTTAATCATAGAACTCAAGCAGGTGAGAGACAGGAGGATCATAAATTGCAGAGACAGAAAAGATTCTaGCCAAATACTGACATCACG +
Preference number: 2 (lower is better)
Translates to: TFNHRTQAGERQEDHKLQRQKRF*PNTDIT
Trigger: CGTGATGTCAGTATTTGGGCAGAATCTTTTCTGTCT...CTGCAATTTATGATCCTCCTGTCTCTCACCTGCTTGAGTTCTATGATTAAACGT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000213117.2
CDS-3UTR CCA 90 bp GCTAAAAGTCAAGTGCTGGTCTGTGTGCAAGGACAGCCTTCTGTGCTCACATTCCTCTTGGGCACTGGGTaGCAAGCAGCCCCCGGGAGG +
Preference number: 4 (lower is better)
Translates to: AKSQVLVCVQGQPSVLTFLLGTG*QAAPGR
Trigger: CCTCCCGGGGGCTGCTTGCCACCCAGTGCCCAAGAG...GAATGTGAGCACAGAAGGCTGTCCTTGCACACAGACCAGCACTTGACTTTTAGC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000114431.4
ENSMUST00000213680.2
CDS-3UTR GCA 90 bp GCTAAAAGTCAAGTGCTGGTCTGTGTGCAAGGACAGCCTTCTGTGCTCACATTCGATATCTGTCCACCCTaGGCGAAGCTGGCCGGCACC +
Preference number: 4 (lower is better)
Translates to: AKSQVLVCVQGQPSVLTFDICPP*AKLAGT
Trigger: GGTGCCGGCCAGCTTCGCGCAGGGTGGACAGATATC...GAATGTGAGCACAGAAGGCTGTCCTTGCACACAGACCAGCACTTGACTTTTAGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000114431.4
ENSMUST00000213680.2
CDS-3UTR TCA 90 bp GTAGCTAAAAGTCAAGTGCTGGTCTGTGTGCAAGGACAGCCTTCTGTGCTCACATGTTCACTTTGGGGATaGTCTGGGCCTCCCTGCTGC +
Preference number: 4 (lower is better)
Translates to: VAKSQVLVCVQGQPSVLTCSLWG*SGPPCC
Trigger: GCAGCAGGGAGGCCCAGATCATCCCCAAAGTGAACA...TGTGAGCACAGAAGGCTGTCCTTGCACACAGACCAGCACTTGACTTTTAGCTAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000114431.4
ENSMUST00000213680.2
CDS-3UTR TCA 90 bp CTCAAGCAGGTGAGAGACAGGAGGATCATAAATTGCAGGCTTGCCTGGGCTAATTGTTCACTTTGGGGATaGTCTGGGCCTCCCTGCTGC +
Preference number: 4 (lower is better)
Translates to: LKQVRDRRIINCRLAWANCSLWG*SGPPCC
Trigger: GCAGCAGGGAGGCCCAGATCATCCCCAAAGTGAACA...ATTAGCCCAGGCAAGCCTGCAATTTATGATCCTCCTGTCTCTCACCTGCTTGAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000213117.2
CDS-3UTR TCA 90 bp GCTAAAAGTCAAGTGCTGGTCTGTGTGCAAGGACAGCCTTCTGTGCTCACATTCTGTTCACTTTGGGGATaGTCTGGGCCTCCCTGCTGC +
Preference number: 4 (lower is better)
Translates to: AKSQVLVCVQGQPSVLTFCSLWG*SGPPCC
Trigger: GCAGCAGGGAGGCCCAGATCATCCCCAAAGTGAACA...GAATGTGAGCACAGAAGGCTGTCCTTGCACACAGACCAGCACTTGACTTTTAGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000114431.4
ENSMUST00000213680.2
CDS-3UTR TCA 90 bp AAAGTAGCTAAAAGTCAAGTGCTGGTCTGTGTGCAAGGACAGCCTTCTGTGCTCGCACAGCTGACATGCTaGGCCAACTCCCAGTTCTCC +
Preference number: 4 (lower is better)
Translates to: KVAKSQVLVCVQGQPSVLAQLTC*ANSQFS
Trigger: GGAGAACTGGGAGTTGGCTCAGCATGTCAGCTGTGC...GAGCACAGAAGGCTGTCCTTGCACACAGACCAGCACTTGACTTTTAGCTACTTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000114431.4
ENSMUST00000213680.2
CDS-3UTR TCA 90 bp AGAACTCAAGCAGGTGAGAGACAGGAGGATCATAAATTGCAGGCTTGCCTGGGCCAGTCAGGGTGCCAGTaGCCTCTGTACTTTTCAAAC +
Preference number: 4 (lower is better)
Translates to: RTQAGERQEDHKLQACLGQSGCQ*PLYFSN
Trigger: GTTTGAAAAGTACAGAGGTCACTGGCACCCTGACTG...GCCCAGGCAAGCCTGCAATTTATGATCCTCCTGTCTCTCACCTGCTTGAGTTCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000213117.2
CDS-3UTR TCA 90 bp AAAGTAGCTAAAAGTCAAGTGCTGGTCTGTGTGCAAGGACAGCCTTCTGTGCTCTCTCCTGGTGCTGTCTaGCCACTGAACAGTTGTGCG +
Preference number: 4 (lower is better)
Translates to: KVAKSQVLVCVQGQPSVLSPGAV*PLNSCA
Trigger: CGCACAACTGTTCAGTGGTCAGACAGCACCAGGAGA...GAGCACAGAAGGCTGTCCTTGCACACAGACCAGCACTTGACTTTTAGCTACTTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000114431.4
ENSMUST00000213680.2
CDS-3UTR GCA 90 bp CTCAAGCAGGTGAGAGACAGGAGGATCATAAATTGCAGGCTTGCCTGGGCTAATCTTCATCAGAAGATGTaGCAGAGGAGCAGTCTCCCG +
Preference number: 4 (lower is better)
Translates to: LKQVRDRRIINCRLAWANLHQKM*QRSSLP
Trigger: CGGGAGACTGCTCCTCTGGCACATCTTCTGATGAAG...ATTAGCCCAGGCAAGCCTGCAATTTATGATCCTCCTGTCTCTCACCTGCTTGAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000213117.2
CDS-3UTR GCA 90 bp AAAGTAGCTAAAAGTCAAGTGCTGGTCTGTGTGCAAGGACAGCCTTCTGTGCTCTCCAGGCTCTCCTGGTaGTGTCTGACCACTGAACAG +
Preference number: 4 (lower is better)
Translates to: KVAKSQVLVCVQGQPSVLSRLSW*CLTTEQ
Trigger: CTGTTCAGTGGTCAGACAGCACCAGGAGAGCCTGGA...GAGCACAGAAGGCTGTCCTTGCACACAGACCAGCACTTGACTTTTAGCTACTTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000114431.4
ENSMUST00000213680.2
CDS-3UTR CCA 90 bp TTATCACCGGCAACATCTCTGTTCTATCACTTTTCTAGGCACCTATATTCACTACTCTTGGGCACTGGGTaGCAAGCAGCCCCCGGGAGG +
Preference number: 4 (lower is better)
Translates to: LSPATSLFYHFSRHLYSLLLGTG*QAAPGR
Trigger: CCTCCCGGGGGCTGCTTGCCACCCAGTGCCCAAGAG...TAGTGAATATAGGTGCCTAGAAAAGTGATAGAACAGAGATGTTGCCGGTGATAA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000114431.4
ENSMUST00000213680.2
CDS-3UTR TCA 90 bp GCTAAAAGTCAAGTGCTGGTCTGTGTGCAAGGACAGCCTTCTGTGCTCACATTCCAGTCAGGGTGCCAGTaGCCTCTGTACTTTTCAAAC +
Preference number: 4 (lower is better)
Translates to: AKSQVLVCVQGQPSVLTFQSGCQ*PLYFSN
Trigger: GTTTGAAAAGTACAGAGGTCACTGGCACCCTGACTG...GAATGTGAGCACAGAAGGCTGTCCTTGCACACAGACCAGCACTTGACTTTTAGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000114431.4
ENSMUST00000213680.2
CDS-3UTR GCA 90 bp GCTAAAAGTCAAGTGCTGGTCTGTGTGCAAGGACAGCCTTCTGTGCTCACATTCATACACCTAAAAGCCTaGCCCTTGGAAGGGCAGTCA +
Preference number: 4 (lower is better)
Translates to: AKSQVLVCVQGQPSVLTFIHLKA*PLEGQS
Trigger: TGACTGCCCTTCCAAGGGGCAGGCTTTTAGGTGTAT...GAATGTGAGCACAGAAGGCTGTCCTTGCACACAGACCAGCACTTGACTTTTAGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000114431.4
ENSMUST00000213680.2
CDS-3UTR GCA 90 bp AAAGTAGCTAAAAGTCAAGTGCTGGTCTGTGTGCAAGGACAGCCTTCTGTGCTCCTTCATCAGAAGATGTaGCAGAGGAGCAGTCTCCCG +
Preference number: 4 (lower is better)
Translates to: KVAKSQVLVCVQGQPSVLLHQKM*QRSSLP
Trigger: CGGGAGACTGCTCCTCTGGCACATCTTCTGATGAAG...GAGCACAGAAGGCTGTCCTTGCACACAGACCAGCACTTGACTTTTAGCTACTTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000114431.4
ENSMUST00000213680.2
CDS-3UTR GCA 90 bp AAAGTAGCTAAAAGTCAAGTGCTGGTCTGTGTGCAAGGACAGCCTTCTGTGCTCTCTGGGCCTCCCTGCTaGAGCTTTCTTCATCAGAAG +
Preference number: 4 (lower is better)
Translates to: KVAKSQVLVCVQGQPSVLSGPPC*SFLHQK
Trigger: CTTCTGATGAAGAAAGCTGCAGCAGGGAGGCCCAGA...GAGCACAGAAGGCTGTCCTTGCACACAGACCAGCACTTGACTTTTAGCTACTTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000114431.4
ENSMUST00000213680.2
CDS-3UTR CCA 90 bp AGAACTCAAGCAGGTGAGAGACAGGAGGATCATAAATTGCAGGCTTGCCTGGGCAGGGATCGACCCATATaGTCATCTCCTTTGGAAGTC +
Preference number: 4 (lower is better)
Translates to: RTQAGERQEDHKLQACLGRDRPI*SSPLEV
Trigger: GACTTCCAAAGGAGATGACCATATGGGTCGATCCCT...GCCCAGGCAAGCCTGCAATTTATGATCCTCCTGTCTCTCACCTGCTTGAGTTCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000213117.2
CDS-3UTR CCA 90 bp GAACTCAAGCAGGTGAGAGACAGGAGGATCATAAATTGCAGGCTTGCCTGGGCTCTGGTAGACGCTCTTTaGGTTGTTCACTTTGGGGAT +
Preference number: 4 (lower is better)
Translates to: ELKQVRDRRIINCRLAWALVDAL*VVHFGD
Trigger: ATCCCCAAAGTGAACAACCCAAAGAGCGTCTACCAG...AGCCCAGGCAAGCCTGCAATTTATGATCCTCCTGTCTCTCACCTGCTTGAGTTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000213117.2
CDS-3UTR CCA 90 bp AAAGTAGCTAAAAGTCAAGTGCTGGTCTGTGTGCAAGGACAGCCTTCTGTGCTCTTCTCCAGGCTCTCCTaGTGCTGTCTGACCACTGAA +
Preference number: 4 (lower is better)
Translates to: KVAKSQVLVCVQGQPSVLFSRLS*CCLTTE
Trigger: TTCAGTGGTCAGACAGCACCAGGAGAGCCTGGAGAA...GAGCACAGAAGGCTGTCCTTGCACACAGACCAGCACTTGACTTTTAGCTACTTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000114431.4
ENSMUST00000213680.2
CDS-3UTR GCA 90 bp TTATCACCGGCAACATCTCTGTTCTATCACTTTTCTAGGCACCTATATTCACTAGATATCTGTCCACCCTaGGCGAAGCTGGCCGGCACC +
Preference number: 4 (lower is better)
Translates to: LSPATSLFYHFSRHLYSLDICPP*AKLAGT
Trigger: GGTGCCGGCCAGCTTCGCGCAGGGTGGACAGATATC...TAGTGAATATAGGTGCCTAGAAAAGTGATAGAACAGAGATGTTGCCGGTGATAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000114431.4
ENSMUST00000213680.2
CDS-3UTR GCA 90 bp AATCATAGAACTCAAGCAGGTGAGAGACAGGAGGATCATAAATTGCAGGCTTGCCGTGGCTCTGTTAACTaGACAGCTGACATGCTGAGC +
Preference number: 4 (lower is better)
Translates to: NHRTQAGERQEDHKLQACRGSVN*TADMLS
Trigger: GCTCAGCATGTCAGCTGTGCAGTTAACAGAGCCACG...GCAAGCCTGCAATTTATGATCCTCCTGTCTCTCACCTGCTTGAGTTCTATGATT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000213117.2
CDS-3UTR CCA 90 bp AAAGTAGCTAAAAGTCAAGTGCTGGTCTGTGTGCAAGGACAGCCTTCTGTGCTCAGGGATCGACCCATATaGTCATCTCCTTTGGAAGTC +
Preference number: 4 (lower is better)
Translates to: KVAKSQVLVCVQGQPSVLRDRPI*SSPLEV
Trigger: GACTTCCAAAGGAGATGACCATATGGGTCGATCCCT...GAGCACAGAAGGCTGTCCTTGCACACAGACCAGCACTTGACTTTTAGCTACTTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000114431.4
ENSMUST00000213680.2
CDS-3UTR CCA 90 bp AAAGTAGCTAAAAGTCAAGTGCTGGTCTGTGTGCAAGGACAGCCTTCTGTGCTCCTGGTAGACGCTCTTTaGGTTGTTCACTTTGGGGAT +
Preference number: 4 (lower is better)
Translates to: KVAKSQVLVCVQGQPSVLLVDAL*VVHFGD
Trigger: ATCCCCAAAGTGAACAACCCAAAGAGCGTCTACCAG...GAGCACAGAAGGCTGTCCTTGCACACAGACCAGCACTTGACTTTTAGCTACTTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000114431.4
ENSMUST00000213680.2
CDS-3UTR TCA 90 bp GTAGCTAAAAGTCAAGTGCTGGTCTGTGTGCAAGGACAGCCTTCTGTGCTCACAGAACCACGGCTGCAATaGCTGTTTGAAATTTTCAAC +
Preference number: 4 (lower is better)
Translates to: VAKSQVLVCVQGQPSVLTEPRLQ*LFEIFN
Trigger: GTTGAAAATTTCAAACAGTCATTGCAGCCGTGGTTC...TGTGAGCACAGAAGGCTGTCCTTGCACACAGACCAGCACTTGACTTTTAGCTAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000114431.4
ENSMUST00000213680.2
CDS-3UTR TCA 90 bp TTATCACCGGCAACATCTCTGTTCTATCACTTTTCTAGGCACCTATATTCACTATGTGCGTTGACCCAGTaGTATCTGTCCACCCTGCGC +
Preference number: 4 (lower is better)
Translates to: LSPATSLFYHFSRHLYSLCALTQ*YLSTLR
Trigger: GCGCAGGGTGGACAGATATCACTGGGTCAACGCACA...TAGTGAATATAGGTGCCTAGAAAAGTGATAGAACAGAGATGTTGCCGGTGATAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000114431.4
ENSMUST00000213680.2
CDS-3UTR GCA 90 bp ACAGGGCAACAAAAGATCACATCACACTCAAGAACTCAGCCACGTGGTGAAAATATACACCTAAAAGCCTaGCCCTTGGAAGGGCAGTCA +
Preference number: 4 (lower is better)
Translates to: TGQQKITSHSRTQPRGENIHLKA*PLEGQS
Trigger: TGACTGCCCTTCCAAGGGGCAGGCTTTTAGGTGTAT...ATTTTCACCACGTGGCTGAGTTCTTGAGTGTGATGTGATCTTTTGTTGCCCTGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000213117.2
CDS-3UTR TCA 90 bp TTTATTTTATCACCGGCAACATCTCTGTTCTATCACTTTTCTAGGCACCTATATTGTGCGTTGACCCAGTaGTATCTGTCCACCCTGCGC +
Preference number: 4 (lower is better)
Translates to: FILSPATSLFYHFSRHLYCALTQ*YLSTLR
Trigger: GCGCAGGGTGGACAGATATCACTGGGTCAACGCACA...ATATAGGTGCCTAGAAAAGTGATAGAACAGAGATGTTGCCGGTGATAAAATAAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000114431.4
ENSMUST00000213680.2
CDS-3UTR GCA 90 bp TTATCACCGGCAACATCTCTGTTCTATCACTTTTCTAGGCACCTATATTCACTACGTGGCTCTGTTAACTaGACAGCTGACATGCTGAGC +
Preference number: 4 (lower is better)
Translates to: LSPATSLFYHFSRHLYSLRGSVN*TADMLS
Trigger: GCTCAGCATGTCAGCTGTGCAGTTAACAGAGCCACG...TAGTGAATATAGGTGCCTAGAAAAGTGATAGAACAGAGATGTTGCCGGTGATAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000114431.4
ENSMUST00000213680.2
CDS-3UTR GCA 90 bp TTATCACCGGCAACATCTCTGTTCTATCACTTTTCTAGGCACCTATATTCACTATCTGGGCCTCCCTGCTaGAGCTTTCTTCATCAGAAG +
Preference number: 4 (lower is better)
Translates to: LSPATSLFYHFSRHLYSLSGPPC*SFLHQK
Trigger: CTTCTGATGAAGAAAGCTGCAGCAGGGAGGCCCAGA...TAGTGAATATAGGTGCCTAGAAAAGTGATAGAACAGAGATGTTGCCGGTGATAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000114431.4
ENSMUST00000213680.2
CDS-3UTR CCA 90 bp AGAACTCAAGCAGGTGAGAGACAGGAGGATCATAAATTGCAGGCTTGCCTGGGCACTTTTCAAACAAGATaGTCATCAGCTTTAGTGCAA +
Preference number: 4 (lower is better)
Translates to: RTQAGERQEDHKLQACLGTFQTR*SSALVQ
Trigger: TTGCACTAAAGCTGATGACCATCTTGTTTGAAAAGT...GCCCAGGCAAGCCTGCAATTTATGATCCTCCTGTCTCTCACCTGCTTGAGTTCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000213117.2
CDS-3UTR CCA 90 bp TTATCACCGGCAACATCTCTGTTCTATCACTTTTCTAGGCACCTATATTCACTATTCTCCAGGCTCTCCTaGTGCTGTCTGACCACTGAA +
Preference number: 4 (lower is better)
Translates to: LSPATSLFYHFSRHLYSLFSRLS*CCLTTE
Trigger: TTCAGTGGTCAGACAGCACCAGGAGAGCCTGGAGAA...TAGTGAATATAGGTGCCTAGAAAAGTGATAGAACAGAGATGTTGCCGGTGATAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000114431.4
ENSMUST00000213680.2
CDS-3UTR TCA 90 bp ATCATAGAACTCAAGCAGGTGAGAGACAGGAGGATCATAAATTGCAGGCTTGCCAAGGTTTCTATCTGTTaGGTACTCAGTTTCTCATGC +
Preference number: 4 (lower is better)
Translates to: IIELKQVRDRRIINCRLAKVSIC*VLSFSC
Trigger: GCATGAGAAACTGAGTACTCAACAGATAGAAACCTT...GGCAAGCCTGCAATTTATGATCCTCCTGTCTCTCACCTGCTTGAGTTCTATGAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000213117.2
CDS-3UTR TCA 90 bp TTTATTTTATCACCGGCAACATCTCTGTTCTATCACTTTTCTAGGCACCTATATTCTCCTGGTGCTGTCTaGCCACTGAACAGTTGTGCG +
Preference number: 4 (lower is better)
Translates to: FILSPATSLFYHFSRHLYSPGAV*PLNSCA
Trigger: CGCACAACTGTTCAGTGGTCAGACAGCACCAGGAGA...ATATAGGTGCCTAGAAAAGTGATAGAACAGAGATGTTGCCGGTGATAAAATAAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000114431.4
ENSMUST00000213680.2
CDS-3UTR GCA 90 bp AACACTAATACAATTGAACCTGAAGTTAATGTAGAAGGAAACCCAGGTGCTTTCTCTGGGCCTCCCTGCTaGAGCTTTCTTCATCAGAAG +
Preference number: 4 (lower is better)
Translates to: NTNTIEPEVNVEGNPGAFSGPPC*SFLHQK
Trigger: CTTCTGATGAAGAAAGCTGCAGCAGGGAGGCCCAGA...GAAAGCACCTGGGTTTCCTTCTACATTAACTTCAGGTTCAATTGTATTAGTGTT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000213117.2
CDS-3UTR GCA 90 bp TTTATTTTATCACCGGCAACATCTCTGTTCTATCACTTTTCTAGGCACCTATATTCCAGGCTCTCCTGGTaGTGTCTGACCACTGAACAG +
Preference number: 4 (lower is better)
Translates to: FILSPATSLFYHFSRHLYSRLSW*CLTTEQ
Trigger: CTGTTCAGTGGTCAGACAGCACCAGGAGAGCCTGGA...ATATAGGTGCCTAGAAAAGTGATAGAACAGAGATGTTGCCGGTGATAAAATAAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000114431.4
ENSMUST00000213680.2
CDS-3UTR CCA 90 bp GTAGCTAAAAGTCAAGTGCTGGTCTGTGTGCAAGGACAGCCTTCTGTGCTCACAACTTTTCAAACAAGATaGTCATCAGCTTTAGTGCAA +
Preference number: 4 (lower is better)
Translates to: VAKSQVLVCVQGQPSVLTTFQTR*SSALVQ
Trigger: TTGCACTAAAGCTGATGACCATCTTGTTTGAAAAGT...TGTGAGCACAGAAGGCTGTCCTTGCACACAGACCAGCACTTGACTTTTAGCTAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000114431.4
ENSMUST00000213680.2
CDS-3UTR GCA 90 bp TTTATTTTATCACCGGCAACATCTCTGTTCTATCACTTTTCTAGGCACCTATATCTTCATCAGAAGATGTaGCAGAGGAGCAGTCTCCCG +
Preference number: 4 (lower is better)
Translates to: FILSPATSLFYHFSRHLYLHQKM*QRSSLP
Trigger: CGGGAGACTGCTCCTCTGGCACATCTTCTGATGAAG...ATATAGGTGCCTAGAAAAGTGATAGAACAGAGATGTTGCCGGTGATAAAATAAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000114431.4
ENSMUST00000213680.2
CDS-3UTR CCA 90 bp TTATCACCGGCAACATCTCTGTTCTATCACTTTTCTAGGCACCTATATTCACTAAGGGATCGACCCATATaGTCATCTCCTTTGGAAGTC +
Preference number: 4 (lower is better)
Translates to: LSPATSLFYHFSRHLYSLRDRPI*SSPLEV
Trigger: GACTTCCAAAGGAGATGACCATATGGGTCGATCCCT...TAGTGAATATAGGTGCCTAGAAAAGTGATAGAACAGAGATGTTGCCGGTGATAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000114431.4
ENSMUST00000213680.2
CDS-3UTR GCA 90 bp TTTATTTTATCACCGGCAACATCTCTGTTCTATCACTTTTCTAGGCACCTATATATACACCTAAAAGCCTaGCCCTTGGAAGGGCAGTCA +
Preference number: 4 (lower is better)
Translates to: FILSPATSLFYHFSRHLYIHLKA*PLEGQS
Trigger: TGACTGCCCTTCCAAGGGGCAGGCTTTTAGGTGTAT...ATATAGGTGCCTAGAAAAGTGATAGAACAGAGATGTTGCCGGTGATAAAATAAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000114431.4
ENSMUST00000213680.2
CDS-3UTR TCA 90 bp TTATCACCGGCAACATCTCTGTTCTATCACTTTTCTAGGCACCTATATTCACTAGAACCACGGCTGCAATaGCTGTTTGAAATTTTCAAC +
Preference number: 4 (lower is better)
Translates to: LSPATSLFYHFSRHLYSLEPRLQ*LFEIFN
Trigger: GTTGAAAATTTCAAACAGTCATTGCAGCCGTGGTTC...TAGTGAATATAGGTGCCTAGAAAAGTGATAGAACAGAGATGTTGCCGGTGATAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000114431.4
ENSMUST00000213680.2
CDS-3UTR CCA 90 bp TTTATTTTATCACCGGCAACATCTCTGTTCTATCACTTTTCTAGGCACCTATATCTGGTAGACGCTCTTTaGGTTGTTCACTTTGGGGAT +
Preference number: 4 (lower is better)
Translates to: FILSPATSLFYHFSRHLYLVDAL*VVHFGD
Trigger: ATCCCCAAAGTGAACAACCCAAAGAGCGTCTACCAG...ATATAGGTGCCTAGAAAAGTGATAGAACAGAGATGTTGCCGGTGATAAAATAAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000114431.4
ENSMUST00000213680.2
CDS-3UTR TCA 90 bp TTTATTTTATCACCGGCAACATCTCTGTTCTATCACTTTTCTAGGCACCTATATAAGGTTTCTATCTGTTaGGTACTCAGTTTCTCATGC +
Preference number: 4 (lower is better)
Translates to: FILSPATSLFYHFSRHLYKVSIC*VLSFSC
Trigger: GCATGAGAAACTGAGTACTCAACAGATAGAAACCTT...ATATAGGTGCCTAGAAAAGTGATAGAACAGAGATGTTGCCGGTGATAAAATAAA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000114431.4
ENSMUST00000213680.2
CDS CCA 90 bp CAGTTGTGCGTTGACCCAGTGATATCTGTCCACCCTGCGCGAAGCTaGCCGGCACCACTTAGAGCTCTTGGGCACTGGGTGGCAAGCAGC +
Preference number: 5 (lower is better)
Translates to: QLCVDPVISVHPARS*PAPLRALGHWVASS
Trigger: GCTGCTTGCCACCCAGTGCCCAAGAGCTCTAAGTGGTGCCGGCCAGCTTCGCGCAGGGTGGACAGATATCACTGGGTCAACGCACAACTG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000114431.4
ENSMUST00000213680.2
CDS GCA 90 bp CTCTTCTCCAGGCTCTCCTGGTGCTGTCTGACCACTGAACAGTTGTaGGTTGACCCAGTGATATCTGTCCACCCTGCGCGAAGCTGGCCG +
Preference number: 5 (lower is better)
Translates to: LFSRLSWCCLTTEQL*VDPVISVHPARSWP
Trigger: CGGCCAGCTTCGCGCAGGGTGGACAGATATCACTGGGTCAACGCACAACTGTTCAGTGGTCAGACAGCACCAGGAGAGCCTGGAGAAGAG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000114431.4
ENSMUST00000213680.2
CDS CCA 90 bp CACAATACTGCATACGATGCTGCACACAACCTGGTAGACGCTCTTTaGGTTGTTCACTTTGGGGATGATCTGGGCCTCCCTGCTGCAGCT +
Preference number: 5 (lower is better)
Translates to: HNTAYDAAHNLVDAL*VVHFGDDLGLPAAA
Trigger: AGCTGCAGCAGGGAGGCCCAGATCATCCCCAAAGTGAACAACCCAAAGAGCGTCTACCAGGTTGTGTGCAGCATCGTATGCAGTATTGTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000213117.2
CDS TCA 90 bp TGCACACAACCTGGTAGACGCTCTTTGGGTTGTTCACTTTGGGGATaGTCTGGGCCTCCCTGCTGCAGCTTTCTTCATCAGAAGATGTGC +
Preference number: 5 (lower is better)
Translates to: CTQPGRRSLGCSLWG*SGPPCCSFLHQKMC
Trigger: GCACATCTTCTGATGAAGAAAGCTGCAGCAGGGAGGCCCAGATCATCCCCAAAGTGAACAACCCAAAGAGCGTCTACCAGGTTGTGTGCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000213117.2
CDS-3UTR CAA 90 bp GCTAAAAGTCAAGTGCTGGTCTGTGTGCAAGGACAGCCTTCTGTGCTCACATTCCCTGGTAGACGCTCTTaGGGTTGTTCACTTTGGGGA +
Preference number: 5 (lower is better)
Translates to: AKSQVLVCVQGQPSVLTFPGRRS*GCSLWG
Trigger: TCCCCAAAGTGAACAACCCAAAGAGCGTCTACCAGG...GAATGTGAGCACAGAAGGCTGTCCTTGCACACAGACCAGCACTTGACTTTTAGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000114431.4
ENSMUST00000213680.2
CDS TCA 90 bp GAGGAGCAGTCTCCCGTGGCTCTGTTAACTGCACAGCTGACATGCTaGGCCAACTCCCAGTTCTCCCATCTACCTTTAAAAGAAGCAATT +
Preference number: 5 (lower is better)
Translates to: EEQSPVALLTAQLTC*ANSQFSHLPLKEAI
Trigger: AATTGCTTCTTTTAAAGGTAGATGGGAGAACTGGGAGTTGGCTCAGCATGTCAGCTGTGCAGTTAACAGAGCCACGGGAGACTGCTCCTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000114431.4
ENSMUST00000213117.2
ENSMUST00000213680.2
CDS-3UTR CAA 90 bp AAAGTAGCTAAAAGTCAAGTGCTGGTCTGTGTGCAAGGACAGCCTTCTGTGCTCCCTGGTAGACGCTCTTaGGGTTGTTCACTTTGGGGA +
Preference number: 5 (lower is better)
Translates to: KVAKSQVLVCVQGQPSVLPGRRS*GCSLWG
Trigger: TCCCCAAAGTGAACAACCCAAAGAGCGTCTACCAGG...GAGCACAGAAGGCTGTCCTTGCACACAGACCAGCACTTGACTTTTAGCTACTTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000114431.4
ENSMUST00000213680.2
CDS TCA 90 bp AATTTTCAACCTGGTAGACGCTCTTTGGGTTGTTCACTTTGGGGATaGTCTGGGCCTCCCTGCTGCAGCTTTCTTCATCAGAAGATGTGC +
Preference number: 5 (lower is better)
Translates to: NFQPGRRSLGCSLWG*SGPPCCSFLHQKMC
Trigger: GCACATCTTCTGATGAAGAAAGCTGCAGCAGGGAGGCCCAGATCATCCCCAAAGTGAACAACCCAAAGAGCGTCTACCAGGTTGAAAATT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000114431.4
ENSMUST00000213680.2
CDS TCA 90 bp AATGCTTTCTACGGGGGAGGCAGAACCACGGCTGCAATGACTGTTTaGAATTTTCAACCTGGTAGACGCTCTTTGGGTTGTTCACTTTGG +
Preference number: 5 (lower is better)
Translates to: NAFYGGGRTTAAMTV*NFQPGRRSLGCSLW
Trigger: CCAAAGTGAACAACCCAAAGAGCGTCTACCAGGTTGAAAATTTCAAACAGTCATTGCAGCCGTGGTTCTGCCTCCCCCGTAGAAAGCATT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000114431.4
ENSMUST00000213680.2
CDS TCA 90 bp ATCTGCCAAATGCTTTCTACGGGGGAGGCAGAACCACGGCTGCAATaGCTGTTTGAAATTTTCAACCTGGTAGACGCTCTTTGGGTTGTT +
Preference number: 5 (lower is better)
Translates to: ICQMLSTGEAEPRLQ*LFEIFNLVDALWVV
Trigger: AACAACCCAAAGAGCGTCTACCAGGTTGAAAATTTCAAACAGTCATTGCAGCCGTGGTTCTGCCTCCCCCGTAGAAAGCATTTGGCAGAT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000114431.4
ENSMUST00000213680.2
CDS-3UTR CAA 90 bp AATCATAGAACTCAAGCAGGTGAGAGACAGGAGGATCATAAATTGCAGGCTTGCCCTGGTAGACGCTCTTaGGGTTGTTCACTTTGGGGA +
Preference number: 5 (lower is better)
Translates to: NHRTQAGERQEDHKLQACPGRRS*GCSLWG
Trigger: TCCCCAAAGTGAACAACCCAAAGAGCGTCTACCAGG...GCAAGCCTGCAATTTATGATCCTCCTGTCTCTCACCTGCTTGAGTTCTATGATT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000213117.2
CDS-3UTR CAA 90 bp AGAACTCAAGCAGGTGAGAGACAGGAGGATCATAAATTGCAGGCTTGCCTGGGCATATGGTCATCTCCTTaGGAAGTCCCAGATGAAAAA +
Preference number: 5 (lower is better)
Translates to: RTQAGERQEDHKLQACLGIWSSP*EVPDEK
Trigger: TTTTTCATCTGGGACTTCCAAAGGAGATGACCATAT...GCCCAGGCAAGCCTGCAATTTATGATCCTCCTGTCTCTCACCTGCTTGAGTTCT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000213117.2
CDS CCA 90 bp AAGGGCAGTCAGGGTGCCAGTGACCTCTGTACTTTTCAAACAAGATaGTCATCAGCTTTAGTGCAAAGGTTTCTATCTGTTGAGTACTCA +
Preference number: 5 (lower is better)
Translates to: KGSQGASDLCTFQTR*SSALVQRFLSVEYS
Trigger: TGAGTACTCAACAGATAGAAACCTTTGCACTAAAGCTGATGACCATCTTGTTTGAAAAGTACAGAGGTCACTGGCACCCTGACTGCCCTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000114431.4
ENSMUST00000213117.2
ENSMUST00000213680.2
CDS-3UTR CAA 90 bp GCTAAAAGTCAAGTGCTGGTCTGTGTGCAAGGACAGCCTTCTGTGCTCACATTCAAAGGTTTCTATCTGTaGAGTACTCAGTTTCTCATG +
Preference number: 5 (lower is better)
Translates to: AKSQVLVCVQGQPSVLTFKGFYL*STQFLM
Trigger: CATGAGAAACTGAGTACTCAACAGATAGAAACCTTT...GAATGTGAGCACAGAAGGCTGTCCTTGCACACAGACCAGCACTTGACTTTTAGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000114431.4
ENSMUST00000213680.2
CDS-3UTR CAA 90 bp GTAGCTAAAAGTCAAGTGCTGGTCTGTGTGCAAGGACAGCCTTCTGTGCTCACAGGGTCTTTATTCTCATaGTTGTTTATCCTGATACAC +
Preference number: 5 (lower is better)
Translates to: VAKSQVLVCVQGQPSVLTGSLFS*LFILIH
Trigger: GTGTATCAGGATAAACAACAATGAGAATAAAGACCC...TGTGAGCACAGAAGGCTGTCCTTGCACACAGACCAGCACTTGACTTTTAGCTAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000114431.4
ENSMUST00000213680.2
CDS-3UTR CAA 90 bp AAAGTAGCTAAAAGTCAAGTGCTGGTCTGTGTGCAAGGACAGCCTTCTGTGCTCATATGGTCATCTCCTTaGGAAGTCCCAGATGAAAAA +
Preference number: 5 (lower is better)
Translates to: KVAKSQVLVCVQGQPSVLIWSSP*EVPDEK
Trigger: TTTTTCATCTGGGACTTCCAAAGGAGATGACCATAT...GAGCACAGAAGGCTGTCCTTGCACACAGACCAGCACTTGACTTTTAGCTACTTT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000114431.4
ENSMUST00000213680.2
CDS-3UTR CAA 90 bp ACAGGGCAACAAAAGATCACATCACACTCAAGAACTCAGCCACGTGGTGAAAATGGGTCTTTATTCTCATaGTTGTTTATCCTGATACAC +
Preference number: 5 (lower is better)
Translates to: TGQQKITSHSRTQPRGENGSLFS*LFILIH
Trigger: GTGTATCAGGATAAACAACAATGAGAATAAAGACCC...ATTTTCACCACGTGGCTGAGTTCTTGAGTGTGATGTGATCTTTTGTTGCCCTGT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000213117.2
CDS-3UTR CAA 90 bp ACGTTTAATCATAGAACTCAAGCAGGTGAGAGACAGGAGGATCATAAATTGCAGAAAGGTTTCTATCTGTaGAGTACTCAGTTTCTCATG +
Preference number: 5 (lower is better)
Translates to: TFNHRTQAGERQEDHKLQKGFYL*STQFLM
Trigger: CATGAGAAACTGAGTACTCAACAGATAGAAACCTTT...CTGCAATTTATGATCCTCCTGTCTCTCACCTGCTTGAGTTCTATGATTAAACGT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000213117.2
CDS-3UTR CAA 90 bp TTATCACCGGCAACATCTCTGTTCTATCACTTTTCTAGGCACCTATATTCACTAAAAGGTTTCTATCTGTaGAGTACTCAGTTTCTCATG +
Preference number: 5 (lower is better)
Translates to: LSPATSLFYHFSRHLYSLKGFYL*STQFLM
Trigger: CATGAGAAACTGAGTACTCAACAGATAGAAACCTTT...TAGTGAATATAGGTGCCTAGAAAAGTGATAGAACAGAGATGTTGCCGGTGATAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000114431.4
ENSMUST00000213680.2
CDS TCA 90 bp TCAAACAAGATGGTCATCAGCTTTAGTGCAAAGGTTTCTATCTGTTaGGTACTCAGTTTCTCATGCTTTTTCACCAATCTTGTGACAAAA +
Preference number: 5 (lower is better)
Translates to: SNKMVISFSAKVSIC*VLSFSCFFTNLVTK
Trigger: TTTTGTCACAAGATTGGTGAAAAAGCATGAGAAACTGAGTACTCAACAGATAGAAACCTTTGCACTAAAGCTGATGACCATCTTGTTTGA
37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000114431.4
ENSMUST00000213117.2
ENSMUST00000213680.2
CDS-3UTR CAA 90 bp TTTATTTTATCACCGGCAACATCTCTGTTCTATCACTTTTCTAGGCACCTATATATATGGTCATCTCCTTaGGAAGTCCCAGATGAAAAA +
Preference number: 5 (lower is better)
Translates to: FILSPATSLFYHFSRHLYIWSSP*EVPDEK
Trigger: TTTTTCATCTGGGACTTCCAAAGGAGATGACCATAT...ATATAGGTGCCTAGAAAAGTGATAGAACAGAGATGTTGCCGGTGATAAAATAAA
37% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000114431.4
ENSMUST00000213680.2
CDS CCA 72 bp GCTGGCCGGCACCACTTAGAGCTCTTGGGCACTGGGTaGCAAGCAGCCCCCGGGAGGAACCCACGACCATCT +
Preference number: 6 (lower is better)
Translates to: AGRHHLELLGTG*QAAPGRNPRPS
Trigger: AGATGGTCGTGGGTTCCTCCCGGGGGCTGCTTGCCACCCAGTGCCCAAGAGCTCTAAGTGGTGCCGGCCAGC
67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000114431.4
ENSMUST00000213680.2
CDS CCA 72 bp GTTGACCCAGTGATATCTGTCCACCCTGCGCGAAGCTaGCCGGCACCACTTAGAGCTCTTGGGCACTGGGTG +
Preference number: 6 (lower is better)
Translates to: VDPVISVHPARS*PAPLRALGHWV
Trigger: CACCCAGTGCCCAAGAGCTCTAAGTGGTGCCGGCCAGCTTCGCGCAGGGTGGACAGATATCACTGGGTCAAC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000114431.4
ENSMUST00000213680.2
CDS GCA 72 bp AGGCTCTCCTGGTGCTGTCTGACCACTGAACAGTTGTaGGTTGACCCAGTGATATCTGTCCACCCTGCGCGA +
Preference number: 6 (lower is better)
Translates to: RLSWCCLTTEQL*VDPVISVHPAR
Trigger: TCGCGCAGGGTGGACAGATATCACTGGGTCAACGCACAACTGTTCAGTGGTCAGACAGCACCAGGAGAGCCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000114431.4
ENSMUST00000213680.2
CDS CAA 72 bp TCCAGGCTCTCCTGGTGCTGTCTGACCACTGAACAGTaGTGCGTTGACCCAGTGATATCTGTCCACCCTGCG +
Preference number: 6 (lower is better)
Translates to: SRLSWCCLTTEQ*CVDPVISVHPA
Trigger: CGCAGGGTGGACAGATATCACTGGGTCAACGCACAACTGTTCAGTGGTCAGACAGCACCAGGAGAGCCTGGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000114431.4
ENSMUST00000213680.2
CDS TCA 72 bp CCTGGTAGACGCTCTTTGGGTTGTTCACTTTGGGGATaGTCTGGGCCTCCCTGCTGCAGCTTTCTTCATCAG +
Preference number: 6 (lower is better)
Translates to: PGRRSLGCSLWG*SGPPCCSFLHQ
Trigger: CTGATGAAGAAAGCTGCAGCAGGGAGGCCCAGATCATCCCCAAAGTGAACAACCCAAAGAGCGTCTACCAGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000114431.4
ENSMUST00000213117.2
ENSMUST00000213680.2
CDS CCA 72 bp GCATACGATGCTGCACACAACCTGGTAGACGCTCTTTaGGTTGTTCACTTTGGGGATGATCTGGGCCTCCCT +
Preference number: 6 (lower is better)
Translates to: AYDAAHNLVDAL*VVHFGDDLGLP
Trigger: AGGGAGGCCCAGATCATCCCCAAAGTGAACAACCCAAAGAGCGTCTACCAGGTTGTGTGCAGCATCGTATGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000213117.2
CDS TCA 72 bp AAAGCCTGCCCCTTGGAAGGGCAGTCAGGGTGCCAGTaGCCTCTGTACTTTTCAAACAAGATGGTCATCAGC +
Preference number: 6 (lower is better)
Translates to: KACPLEGQSGCQ*PLYFSNKMVIS
Trigger: GCTGATGACCATCTTGTTTGAAAAGTACAGAGGTCACTGGCACCCTGACTGCCCTTCCAAGGGGCAGGCTTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000114431.4
ENSMUST00000213117.2
ENSMUST00000213680.2
CDS TCA 72 bp TCTCCCGTGGCTCTGTTAACTGCACAGCTGACATGCTaGGCCAACTCCCAGTTCTCCCATCTACCTTTAAAA +
Preference number: 6 (lower is better)
Translates to: SPVALLTAQLTC*ANSQFSHLPLK
Trigger: TTTTAAAGGTAGATGGGAGAACTGGGAGTTGGCTCAGCATGTCAGCTGTGCAGTTAACAGAGCCACGGGAGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000114431.4
ENSMUST00000213117.2
ENSMUST00000213680.2
CDS TCA 72 bp TACGGGGGAGGCAGAACCACGGCTGCAATGACTGTTTaGAATTTTCAACCTGGTAGACGCTCTTTGGGTTGT +
Preference number: 6 (lower is better)
Translates to: YGGGRTTAAMTV*NFQPGRRSLGC
Trigger: ACAACCCAAAGAGCGTCTACCAGGTTGAAAATTTCAAACAGTCATTGCAGCCGTGGTTCTGCCTCCCCCGTA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000114431.4
ENSMUST00000213680.2
CDS TCA 72 bp ATGCTTTCTACGGGGGAGGCAGAACCACGGCTGCAATaGCTGTTTGAAATTTTCAACCTGGTAGACGCTCTT +
Preference number: 6 (lower is better)
Translates to: MLSTGEAEPRLQ*LFEIFNLVDAL
Trigger: AAGAGCGTCTACCAGGTTGAAAATTTCAAACAGTCATTGCAGCCGTGGTTCTGCCTCCCCCGTAGAAAGCAT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000114431.4
ENSMUST00000213680.2
CDS CCA 72 bp CAGGGTGCCAGTGACCTCTGTACTTTTCAAACAAGATaGTCATCAGCTTTAGTGCAAAGGTTTCTATCTGTT +
Preference number: 6 (lower is better)
Translates to: QGASDLCTFQTR*SSALVQRFLSV
Trigger: AACAGATAGAAACCTTTGCACTAAAGCTGATGACCATCTTGTTTGAAAAGTACAGAGGTCACTGGCACCCTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000114431.4
ENSMUST00000213117.2
ENSMUST00000213680.2
CDS CAA 72 bp GCACAAGCCCTTTCTAAAACAGGGTCTTTATTCTCATaGTTGTTTATCCTGATACACCTAAAAGCCTGCCCC +
Preference number: 6 (lower is better)
Translates to: AQALSKTGSLFS*LFILIHLKACP
Trigger: GGGGCAGGCTTTTAGGTGTATCAGGATAAACAACAATGAGAATAAAGACCCTGTTTTAGAAAGGGCTTGTGC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000114431.4
ENSMUST00000213117.2
ENSMUST00000213680.2
CDS TCA 72 bp ATGGTCATCAGCTTTAGTGCAAAGGTTTCTATCTGTTaGGTACTCAGTTTCTCATGCTTTTTCACCAATCTT +
Preference number: 6 (lower is better)
Translates to: MVISFSAKVSIC*VLSFSCFFTNL
Trigger: AAGATTGGTGAAAAAGCATGAGAAACTGAGTACTCAACAGATAGAAACCTTTGCACTAAAGCTGATGACCAT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000114431.4
ENSMUST00000213117.2
ENSMUST00000213680.2