RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for BTBD6 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000002803

Ensembl transcript IDs: ENSMUST00000002880.7, ENSMUST00000165079.8, ENSMUST00000221104.2, ENSMUST00000221500.2, ENSMUST00000222209.2, ENSMUST00000223287.2, ENSMUST00000223368.2

Found 126 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp GATCGGGGACGACCTTGGACCCAAGTCTTCCTTCCACCTGTGGAATaGTGTCTAGGGTCAGCGGACACGGGCTGTGAGAAGTCAAGTTTC +
Preference number: 1 (lower is better)
Translates to: DRGRPWTQVFLPPVE*CLGSADTGCEKSSF
Trigger: GAAACTTGACTTCTCACAGCCCGTGTCCGCTGACCCTAGACAGCATTCCACAGGTGGAAGGAAGACTTGGGTCCAAGGTCGTCCCCGATC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000002880.7
ENSMUST00000165079.8
ENSMUST00000221104.2
3UTR CCA 90 bp GTAAGGCAGCTGGAAGTGTCCTGCACCTCCACTGCACTTACTGTGTaGACTCTATGGAGGAAGAGCCTGGTGGCAAGTCCACTCCAACCT +
Preference number: 1 (lower is better)
Translates to: VRQLEVSCTSTALTV*TLWRKSLVASPLQP
Trigger: AGGTTGGAGTGGACTTGCCACCAGGCTCTTCCTCCATAGAGTCCACACAGTAAGTGCAGTGGAGGTGCAGGACACTTCCAGCTGCCTTAC
56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000002880.7
ENSMUST00000165079.8
ENSMUST00000221104.2
3UTR TCA 90 bp CCTTCCACCTGTGGAATGCTGTCTAGGGTCAGCGGACACGGGCTGTaGGAAGTCAAGTTTCAGACTCTGGCTGATAGAGAAAGCCAAGCC +
Preference number: 1 (lower is better)
Translates to: PSTCGMLSRVSGHGL*EVKFQTLADRESQA
Trigger: GGCTTGGCTTTCTCTATCAGCCAGAGTCTGAAACTTGACTTCTCACAGCCCGTGTCCGCTGACCCTAGACAGCATTCCACAGGTGGAAGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000002880.7
ENSMUST00000165079.8
ENSMUST00000221104.2
3UTR GCA 90 bp TTGAATGGTATCAGTAAGGCAGCTGGAAGTGTCCTGCACCTCCACTaGACTTACTGTGTGGACTCTATGGAGGAAGAGCCTGGTGGCAAG +
Preference number: 1 (lower is better)
Translates to: LNGISKAAGSVLHLH*TYCVDSMEEEPGGK
Trigger: CTTGCCACCAGGCTCTTCCTCCATAGAGTCCACACAGTAAGTGCAGTGGAGGTGCAGGACACTTCCAGCTGCCTTACTGATACCATTCAA
52% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000002880.7
ENSMUST00000165079.8
ENSMUST00000221104.2
3UTR TCA 90 bp GAGAAGTCAAGTTTCAGACTCTGGCTGATAGAGAAAGCCAAGCCTTaGATGGTATCAGTAAGGCAGCTGGAAGTGTCCTGCACCTCCACT +
Preference number: 1 (lower is better)
Translates to: EKSSFRLWLIEKAKP*MVSVRQLEVSCTST
Trigger: AGTGGAGGTGCAGGACACTTCCAGCTGCCTTACTGATACCATTCAAGGCTTGGCTTTCTCTATCAGCCAGAGTCTGAAACTTGACTTCTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000002880.7
ENSMUST00000165079.8
ENSMUST00000221104.2
3UTR CAA 90 bp AGGGTCCTGAAGCTTGGGTGTCACTGGCAGGGATCGGGGACGACCTaGGACCCAAGTCTTCCTTCCACCTGTGGAATGCTGTCTAGGGTC +
Preference number: 2 (lower is better)
Translates to: RVLKLGCHWQGSGTT*DPSLPSTCGMLSRV
Trigger: GACCCTAGACAGCATTCCACAGGTGGAAGGAAGACTTGGGTCCAAGGTCGTCCCCGATCCCTGCCAGTGACACCCAAGCTTCAGGACCCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000002880.7
ENSMUST00000165079.8
ENSMUST00000221104.2
3UTR-3UTR CCA 90 bp TTGGACCCAAGTCTTCCTTCCACCTGTGGAATGCTGTCTAGGGTCAGCGGACACGGAGGAAGAGCCTGGTaGCAAGTCCACTCCAACCTT +
Preference number: 2 (lower is better)
Translates to: LDPSLPSTCGMLSRVSGHGGRAW*QVHSNL
Trigger: AAGGTTGGAGTGGACTTGCCACCAGGCTCTTCCTCC...GTGTCCGCTGACCCTAGACAGCATTCCACAGGTGGAAGGAAGACTTGGGTCCAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000002880.7
ENSMUST00000165079.8
ENSMUST00000221104.2
3UTR-3UTR CCA 90 bp GGGACGACCTTGGACCCAAGTCTTCCTTCCACCTGTGGAATGCTGTCTAGGGTCTATGGAGGAAGAGCCTaGTGGCAAGTCCACTCCAAC +
Preference number: 2 (lower is better)
Translates to: GTTLDPSLPSTCGMLSRVYGGRA*WQVHSN
Trigger: GTTGGAGTGGACTTGCCACCAGGCTCTTCCTCCATA...GACCCTAGACAGCATTCCACAGGTGGAAGGAAGACTTGGGTCCAAGGTCGTCCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000002880.7
ENSMUST00000165079.8
ENSMUST00000221104.2
3UTR-3UTR TCA 90 bp GATCGGGGACGACCTTGGACCCAAGTCTTCCTTCCACCTGTGGAATGCTGTCTAAGCGGACACGGGCTGTaGGAAGTCAAGTTTCAGACT +
Preference number: 2 (lower is better)
Translates to: DRGRPWTQVFLPPVECCLSGHGL*EVKFQT
Trigger: AGTCTGAAACTTGACTTCTCACAGCCCGTGTCCGCT...TAGACAGCATTCCACAGGTGGAAGGAAGACTTGGGTCCAAGGTCGTCCCCGATC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000002880.7
ENSMUST00000165079.8
ENSMUST00000221104.2
3UTR-3UTR GCA 90 bp GGCTTGAATGGGAGGCCTCAACGTAGGCTGAAATCACTTAGAATCCAAAGGGGGCTTCCACCTGTGGAATaGTGTCTAGGGTCAGCGGAC +
Preference number: 2 (lower is better)
Translates to: GLNGRPQRRLKSLRIQRGLPPVE*CLGSAD
Trigger: GTCCGCTGACCCTAGACAGCATTCCACAGGTGGAAG...CCCCCTTTGGATTCTAAGTGATTTCAGCCTACGTTGAGGCCTCCCATTCAAGCC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000002880.7
ENSMUST00000165079.8
ENSMUST00000221104.2
3UTR-3UTR TCA 90 bp CACTTAGAATCCAAAGGGGGAGGGAAATCCAAGGGTCCTGAAGCTTGGGTGTCAAGCGGACACGGGCTGTaGGAAGTCAAGTTTCAGACT +
Preference number: 2 (lower is better)
Translates to: HLESKGGGKSKGPEAWVSSGHGL*EVKFQT
Trigger: AGTCTGAAACTTGACTTCTCACAGCCCGTGTCCGCT...TGACACCCAAGCTTCAGGACCCTTGGATTTCCCTCCCCCTTTGGATTCTAAGTG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000002880.7
ENSMUST00000165079.8
ENSMUST00000221104.2
3UTR-3UTR GCA 90 bp GGCTTGAATGGGAGGCCTCAACGTAGGCTGAAATCACTTAGAATCCAAAGGGGGCAGCTGGAAGTGTCCTaGACCTCCACTGCACTTACT +
Preference number: 2 (lower is better)
Translates to: GLNGRPQRRLKSLRIQRGQLEVS*TSTALT
Trigger: AGTAAGTGCAGTGGAGGTGCAGGACACTTCCAGCTG...CCCCCTTTGGATTCTAAGTGATTTCAGCCTACGTTGAGGCCTCCCATTCAAGCC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000002880.7
ENSMUST00000165079.8
ENSMUST00000221104.2
3UTR-3UTR CCA 90 bp AATGGGAGGCCTCAACGTAGGCTGAAATCACTTAGAATCCAAAGGGGGAGGGAAGGAGGAAGAGCCTGGTaGCAAGTCCACTCCAACCTT +
Preference number: 2 (lower is better)
Translates to: NGRPQRRLKSLRIQRGREGGRAW*QVHSNL
Trigger: AAGGTTGGAGTGGACTTGCCACCAGGCTCTTCCTCC...TTCCCTCCCCCTTTGGATTCTAAGTGATTTCAGCCTACGTTGAGGCCTCCCATT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000002880.7
ENSMUST00000165079.8
ENSMUST00000221104.2
3UTR-3UTR CCA 90 bp CACTTAGAATCCAAAGGGGGAGGGAAATCCAAGGGTCCTGAAGCTTGGGTGTCATATGGAGGAAGAGCCTaGTGGCAAGTCCACTCCAAC +
Preference number: 2 (lower is better)
Translates to: HLESKGGGKSKGPEAWVSYGGRA*WQVHSN
Trigger: GTTGGAGTGGACTTGCCACCAGGCTCTTCCTCCATA...TGACACCCAAGCTTCAGGACCCTTGGATTTCCCTCCCCCTTTGGATTCTAAGTG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000002880.7
ENSMUST00000165079.8
ENSMUST00000221104.2
3UTR-3UTR GCA 90 bp CAACGTAGGCTGAAATCACTTAGAATCCAAAGGGGGAGGGAAATCCAAGGGTCCCAGCTGGAAGTGTCCTaGACCTCCACTGCACTTACT +
Preference number: 2 (lower is better)
Translates to: QRRLKSLRIQRGREIQGSQLEVS*TSTALT
Trigger: AGTAAGTGCAGTGGAGGTGCAGGACACTTCCAGCTG...GGACCCTTGGATTTCCCTCCCCCTTTGGATTCTAAGTGATTTCAGCCTACGTTG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000002880.7
ENSMUST00000165079.8
ENSMUST00000221104.2
3UTR-3UTR GCA 90 bp TGTGGCTTGAATGGGAGGCCTCAACGTAGGCTGAAATCACTTAGAATCCAAAGGCTTCCACCTGTGGAATaGTGTCTAGGGTCAGCGGAC +
Preference number: 2 (lower is better)
Translates to: CGLNGRPQRRLKSLRIQRLPPVE*CLGSAD
Trigger: GTCCGCTGACCCTAGACAGCATTCCACAGGTGGAAG...CCTTTGGATTCTAAGTGATTTCAGCCTACGTTGAGGCCTCCCATTCAAGCCACA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000002880.7
ENSMUST00000165079.8
ENSMUST00000221104.2
3UTR-3UTR CCA 90 bp CAACGTAGGCTGAAATCACTTAGAATCCAAAGGGGGAGGGAAATCCAAGGGTCCACTGTGTGGACTCTATaGAGGAAGAGCCTGGTGGCA +
Preference number: 2 (lower is better)
Translates to: QRRLKSLRIQRGREIQGSTVWTL*RKSLVA
Trigger: TGCCACCAGGCTCTTCCTCCATAGAGTCCACACAGT...GGACCCTTGGATTTCCCTCCCCCTTTGGATTCTAAGTGATTTCAGCCTACGTTG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000002880.7
ENSMUST00000165079.8
ENSMUST00000221104.2
3UTR-3UTR CCA 90 bp CAACGTAGGCTGAAATCACTTAGAATCCAAAGGGGGAGGGAAATCCAAGGGTCCACTGCACTTACTGTGTaGACTCTATGGAGGAAGAGC +
Preference number: 2 (lower is better)
Translates to: QRRLKSLRIQRGREIQGSTALTV*TLWRKS
Trigger: GCTCTTCCTCCATAGAGTCCACACAGTAAGTGCAGT...GGACCCTTGGATTTCCCTCCCCCTTTGGATTCTAAGTGATTTCAGCCTACGTTG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000002880.7
ENSMUST00000165079.8
ENSMUST00000221104.2
3UTR-3UTR GCA 90 bp ATTTGTGGCTTGAATGGGAGGCCTCAACGTAGGCTGAAATCACTTAGAATCCAACAGCTGGAAGTGTCCTaGACCTCCACTGCACTTACT +
Preference number: 2 (lower is better)
Translates to: ICGLNGRPQRRLKSLRIQQLEVS*TSTALT
Trigger: AGTAAGTGCAGTGGAGGTGCAGGACACTTCCAGCTG...TTGGATTCTAAGTGATTTCAGCCTACGTTGAGGCCTCCCATTCAAGCCACAAAT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000002880.7
ENSMUST00000165079.8
ENSMUST00000221104.2
3UTR-3UTR CCA 90 bp ATTTGTGGCTTGAATGGGAGGCCTCAACGTAGGCTGAAATCACTTAGAATCCAAACTGCACTTACTGTGTaGACTCTATGGAGGAAGAGC +
Preference number: 2 (lower is better)
Translates to: ICGLNGRPQRRLKSLRIQTALTV*TLWRKS
Trigger: GCTCTTCCTCCATAGAGTCCACACAGTAAGTGCAGT...TTGGATTCTAAGTGATTTCAGCCTACGTTGAGGCCTCCCATTCAAGCCACAAAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000002880.7
ENSMUST00000165079.8
ENSMUST00000221104.2
3UTR CCA 72 bp TCCAAAGGGGGAGGGAAATCCAAGGGTCCTGAAGCTTaGGTGTCACTGGCAGGGATCGGGGACGACCTTGGA +
Preference number: 3 (lower is better)
Translates to: SKGGGKSKGPEA*VSLAGIGDDLG
Trigger: TCCAAGGTCGTCCCCGATCCCTGCCAGTGACACCCAAGCTTCAGGACCCTTGGATTTCCCTCCCCCTTTGGA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000002880.7
ENSMUST00000165079.8
ENSMUST00000221104.2
3UTR GCA 72 bp CGACCTTGGACCCAAGTCTTCCTTCCACCTGTGGAATaGTGTCTAGGGTCAGCGGACACGGGCTGTGAGAAG +
Preference number: 3 (lower is better)
Translates to: RPWTQVFLPPVE*CLGSADTGCEK
Trigger: CTTCTCACAGCCCGTGTCCGCTGACCCTAGACAGCATTCCACAGGTGGAAGGAAGACTTGGGTCCAAGGTCG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000002880.7
ENSMUST00000165079.8
ENSMUST00000221104.2
3UTR TCA 72 bp CTTAGAATCCAAAGGGGGAGGGAAATCCAAGGGTCCTaGAGCTTGGGTGTCACTGGCAGGGATCGGGGACGA +
Preference number: 3 (lower is better)
Translates to: LRIQRGREIQGS*SLGVTGRDRGR
Trigger: TCGTCCCCGATCCCTGCCAGTGACACCCAAGCTTCAGGACCCTTGGATTTCCCTCCCCCTTTGGATTCTAAG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000002880.7
ENSMUST00000165079.8
ENSMUST00000221104.2
3UTR CCA 72 bp TCCTGCACCTCCACTGCACTTACTGTGTGGACTCTATaGAGGAAGAGCCTGGTGGCAAGTCCACTCCAACCT +
Preference number: 3 (lower is better)
Translates to: SCTSTALTVWTL*RKSLVASPLQP
Trigger: AGGTTGGAGTGGACTTGCCACCAGGCTCTTCCTCCATAGAGTCCACACAGTAAGTGCAGTGGAGGTGCAGGA
56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000002880.7
ENSMUST00000165079.8
ENSMUST00000221104.2
3UTR CCA 72 bp CTGGAAGTGTCCTGCACCTCCACTGCACTTACTGTGTaGACTCTATGGAGGAAGAGCCTGGTGGCAAGTCCA +
Preference number: 3 (lower is better)
Translates to: LEVSCTSTALTV*TLWRKSLVASP
Trigger: TGGACTTGCCACCAGGCTCTTCCTCCATAGAGTCCACACAGTAAGTGCAGTGGAGGTGCAGGACACTTCCAG
56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000002880.7
ENSMUST00000165079.8
ENSMUST00000221104.2
3UTR TCA 72 bp CTTCAGACCTCAGGGCCATTTCAGCTTGTGCATCAATaGCTTCCCAGCATCTCTGGGTCAGTTCAGGCTCCT +
Preference number: 3 (lower is better)
Translates to: LQTSGPFQLVHQ*LPSISGSVQAP
Trigger: AGGAGCCTGAACTGACCCAGAGATGCTGGGAAGTCATTGATGCACAAGCTGAAATGGCCCTGAGGTCTGAAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000223287.2
3UTR GCA 72 bp ATCAGTAAGGCAGCTGGAAGTGTCCTGCACCTCCACTaGACTTACTGTGTGGACTCTATGGAGGAAGAGCCT +
Preference number: 3 (lower is better)
Translates to: ISKAAGSVLHLH*TYCVDSMEEEP
Trigger: AGGCTCTTCCTCCATAGAGTCCACACAGTAAGTGCAGTGGAGGTGCAGGACACTTCCAGCTGCCTTACTGAT
53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000002880.7
ENSMUST00000165079.8
ENSMUST00000221104.2
3UTR TCA 72 bp TGTGGAATGCTGTCTAGGGTCAGCGGACACGGGCTGTaGGAAGTCAAGTTTCAGACTCTGGCTGATAGAGAA +
Preference number: 3 (lower is better)
Translates to: CGMLSRVSGHGL*EVKFQTLADRE
Trigger: TTCTCTATCAGCCAGAGTCTGAAACTTGACTTCTCACAGCCCGTGTCCGCTGACCCTAGACAGCATTCCACA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000002880.7
ENSMUST00000165079.8
ENSMUST00000221104.2
3UTR TCA 72 bp AGTTTCAGACTCTGGCTGATAGAGAAAGCCAAGCCTTaGATGGTATCAGTAAGGCAGCTGGAAGTGTCCTGC +
Preference number: 3 (lower is better)
Translates to: SFRLWLIEKAKP*MVSVRQLEVSC
Trigger: GCAGGACACTTCCAGCTGCCTTACTGATACCATTCAAGGCTTGGCTTTCTCTATCAGCCAGAGTCTGAAACT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000002880.7
ENSMUST00000165079.8
ENSMUST00000221104.2
CDS-3UTR TCA 90 bp AGGGTCCTGAAGCTTGGGTGTCACTGGCAGGGATCGGGGACGACCTTGGACCCAACATGCCTCTTGTTGTaGGGAGTGACTGGGAGGCCC +
Preference number: 4 (lower is better)
Translates to: RVLKLGCHWQGSGTTLDPTCLLL*GVTGRP
Trigger: GGGCCTCCCAGTCACTCCTCACAACAAGAGGCATGT...TGGGTCCAAGGTCGTCCCCGATCCCTGCCAGTGACACCCAAGCTTCAGGACCCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000002880.7
ENSMUST00000165079.8
ENSMUST00000221104.2
CDS-3UTR TCA 90 bp GGAAATCCAAGGGTCCTGAAGCTTGGGTGTCACTGGCAGGGATCGGGGACGACCCCTCCCTGGTCACAATaGTCTCCAGTGTCTGCCGGT +
Preference number: 4 (lower is better)
Translates to: GNPRVLKLGCHWQGSGTTPPWSQ*SPVSAG
Trigger: ACCGGCAGACACTGGAGATCATTGTGACCAGGGAGG...GGTCGTCCCCGATCCCTGCCAGTGACACCCAAGCTTCAGGACCCTTGGATTTCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000002880.7
ENSMUST00000165079.8
ENSMUST00000221104.2
CDS-3UTR TCA 90 bp GAGGGAAATCCAAGGGTCCTGAAGCTTGGGTGTCACTGGCAGGGATCGGGGACGACATGCCTCTTGTTGTaGGGAGTGACTGGGAGGCCC +
Preference number: 4 (lower is better)
Translates to: EGNPRVLKLGCHWQGSGTTCLLL*GVTGRP
Trigger: GGGCCTCCCAGTCACTCCTCACAACAAGAGGCATGT...CGTCCCCGATCCCTGCCAGTGACACCCAAGCTTCAGGACCCTTGGATTTCCCTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000002880.7
ENSMUST00000165079.8
ENSMUST00000221104.2
CDS-3UTR GCA 90 bp GGGACGACCTTGGACCCAAGTCTTCCTTCCACCTGTGGAATGCTGTCTAGGGTCCCTGGGAAACGGCTCTaGGAGCACCAGCAGGGAGGT +
Preference number: 4 (lower is better)
Translates to: GTTLDPSLPSTCGMLSRVPGKRL*EHQQGG
Trigger: ACCTCCCTGCTGGTGCTCGCAGAGCCGTTTCCCAGG...GACCCTAGACAGCATTCCACAGGTGGAAGGAAGACTTGGGTCCAAGGTCGTCCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000002880.7
CDS-3UTR TCA 90 bp GAGGGAAATCCAAGGGTCCTGAAGCTTGGGTGTCACTGGCAGGGATCGGGGACGTCTTGTTGTGAGGAGTaGCTGGGAGGCCCTGTCTCT +
Preference number: 4 (lower is better)
Translates to: EGNPRVLKLGCHWQGSGTSCCEE*LGGPVS
Trigger: AGAGACAGGGCCTCCCAGTCACTCCTCACAACAAGA...CGTCCCCGATCCCTGCCAGTGACACCCAAGCTTCAGGACCCTTGGATTTCCCTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000002880.7
ENSMUST00000165079.8
ENSMUST00000221104.2
CDS-3UTR TCA 90 bp GGAAATCCAAGGGTCCTGAAGCTTGGGTGTCACTGGCAGGGATCGGGGACGACCTCTTGTTGTGAGGAGTaGCTGGGAGGCCCTGTCTCT +
Preference number: 4 (lower is better)
Translates to: GNPRVLKLGCHWQGSGTTSCCEE*LGGPVS
Trigger: AGAGACAGGGCCTCCCAGTCACTCCTCACAACAAGA...GGTCGTCCCCGATCCCTGCCAGTGACACCCAAGCTTCAGGACCCTTGGATTTCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000002880.7
ENSMUST00000165079.8
ENSMUST00000221104.2
CDS-3UTR TCA 90 bp AGGGTCCTGAAGCTTGGGTGTCACTGGCAGGGATCGGGGACGACCTTGGACCCAGGAATCTGTCCACCCTaGACTCCAGTCCCATTGGTA +
Preference number: 4 (lower is better)
Translates to: RVLKLGCHWQGSGTTLDPGICPP*TPVPLV
Trigger: TACCAATGGGACTGGAGTTCAGGGTGGACAGATTCC...TGGGTCCAAGGTCGTCCCCGATCCCTGCCAGTGACACCCAAGCTTCAGGACCCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000002880.7
ENSMUST00000165079.8
ENSMUST00000221104.2
CDS-3UTR CCA 90 bp GAGGGAAATCCAAGGGTCCTGAAGCTTGGGTGTCACTGGCAGGGATCGGGGACGGAAGACTGGAAGCGGTaGCACCTTTGTGGAGCAAGG +
Preference number: 4 (lower is better)
Translates to: EGNPRVLKLGCHWQGSGTEDWKR*HLCGAR
Trigger: CCTTGCTCCACAAAGGTGCCACCGCTTCCAGTCTTC...CGTCCCCGATCCCTGCCAGTGACACCCAAGCTTCAGGACCCTTGGATTTCCCTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000002880.7
ENSMUST00000165079.8
ENSMUST00000221104.2
CDS-3UTR TCA 90 bp GGGACGACCTTGGACCCAAGTCTTCCTTCCACCTGTGGAATGCTGTCTAGGGTCCCTCCCTGGTCACAATaGTCTCCAGTGTCTGCCGGT +
Preference number: 4 (lower is better)
Translates to: GTTLDPSLPSTCGMLSRVPPWSQ*SPVSAG
Trigger: ACCGGCAGACACTGGAGATCATTGTGACCAGGGAGG...GACCCTAGACAGCATTCCACAGGTGGAAGGAAGACTTGGGTCCAAGGTCGTCCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000002880.7
ENSMUST00000165079.8
ENSMUST00000221104.2
CDS-3UTR CCA 90 bp GGAAATCCAAGGGTCCTGAAGCTTGGGTGTCACTGGCAGGGATCGGGGACGACCACTTCCCAGCATCTCTaGGTCAGTTCAGGCTCCTCA +
Preference number: 4 (lower is better)
Translates to: GNPRVLKLGCHWQGSGTTTSQHL*VSSGSS
Trigger: TGAGGAGCCTGAACTGACCCAGAGATGCTGGGAAGT...GGTCGTCCCCGATCCCTGCCAGTGACACCCAAGCTTCAGGACCCTTGGATTTCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000002880.7
ENSMUST00000165079.8
ENSMUST00000221104.2
CDS-3UTR TCA 90 bp AGGGTCCTGAAGCTTGGGTGTCACTGGCAGGGATCGGGGACGACCTTGGACCCAGGGAATGTGGATTTCTaGCTTCACTTCCGCAAGATC +
Preference number: 4 (lower is better)
Translates to: RVLKLGCHWQGSGTTLDPGNVDF*LHFRKI
Trigger: GATCTTGCGGAAGTGAAGTCAGAAATCCACATTCCC...TGGGTCCAAGGTCGTCCCCGATCCCTGCCAGTGACACCCAAGCTTCAGGACCCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000002880.7
ENSMUST00000165079.8
ENSMUST00000221104.2
CDS-3UTR TCA 90 bp GGGACGACCTTGGACCCAAGTCTTCCTTCCACCTGTGGAATGCTGTCTAGGGTCAACTTGGTGAGGTTCTaGGCCAGGACCATCCCTAGC +
Preference number: 4 (lower is better)
Translates to: GTTLDPSLPSTCGMLSRVNLVRF*ARTIPS
Trigger: GCTAGGGATGGTCCTGGCTCAGAACCTCACCAAGTT...GACCCTAGACAGCATTCCACAGGTGGAAGGAAGACTTGGGTCCAAGGTCGTCCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000002880.7
ENSMUST00000165079.8
ENSMUST00000221104.2
CDS-3UTR CCA 90 bp CACTGCACTTACTGTGTGGACTCTATGGAGGAAGAGCCTGGTGGCAAGTCCACTGTGTCCTGCTCCACCTaGACCGGGTGCTCAAACCAG +
Preference number: 4 (lower is better)
Translates to: HCTYCVDSMEEEPGGKSTVSCST*TGCSNQ
Trigger: CTGGTTTGAGCACCCGGTCCAGGTGGAGCAGGACAC...AGTGGACTTGCCACCAGGCTCTTCCTCCATAGAGTCCACACAGTAAGTGCAGTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000002880.7
ENSMUST00000165079.8
ENSMUST00000221104.2
CDS-3UTR TCA 90 bp AAATCCAAGGGTCCTGAAGCTTGGGTGTCACTGGCAGGGATCGGGGACGACCTTGGAATCTGTCCACCCTaGACTCCAGTCCCATTGGTA +
Preference number: 4 (lower is better)
Translates to: KSKGPEAWVSLAGIGDDLGICPP*TPVPLV
Trigger: TACCAATGGGACTGGAGTTCAGGGTGGACAGATTCC...AAGGTCGTCCCCGATCCCTGCCAGTGACACCCAAGCTTCAGGACCCTTGGATTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000002880.7
ENSMUST00000165079.8
ENSMUST00000221104.2
CDS-3UTR GCA 90 bp GGAAATCCAAGGGTCCTGAAGCTTGGGTGTCACTGGCAGGGATCGGGGACGACCGGCCATTTCAGCTTGTaGATCAATGACTTCCCAGCA +
Preference number: 4 (lower is better)
Translates to: GNPRVLKLGCHWQGSGTTGHFSL*INDFPA
Trigger: TGCTGGGAAGTCATTGATGCACAAGCTGAAATGGCC...GGTCGTCCCCGATCCCTGCCAGTGACACCCAAGCTTCAGGACCCTTGGATTTCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000002880.7
ENSMUST00000165079.8
ENSMUST00000221104.2
CDS-3UTR CCA 90 bp ACGACCTTGGACCCAAGTCTTCCTTCCACCTGTGGAATGCTGTCTAGGGTCAGCGAAGACTGGAAGCGGTaGCACCTTTGTGGAGCAAGG +
Preference number: 4 (lower is better)
Translates to: TTLDPSLPSTCGMLSRVSEDWKR*HLCGAR
Trigger: CCTTGCTCCACAAAGGTGCCACCGCTTCCAGTCTTC...GCTGACCCTAGACAGCATTCCACAGGTGGAAGGAAGACTTGGGTCCAAGGTCGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000002880.7
ENSMUST00000165079.8
ENSMUST00000221104.2
CDS-3UTR CCA 90 bp CACTTAGAATCCAAAGGGGGAGGGAAATCCAAGGGTCCTGAAGCTTGGGTGTCAGTGTCCTGCTCCACCTaGACCGGGTGCTCAAACCAG +
Preference number: 4 (lower is better)
Translates to: HLESKGGGKSKGPEAWVSVSCST*TGCSNQ
Trigger: CTGGTTTGAGCACCCGGTCCAGGTGGAGCAGGACAC...TGACACCCAAGCTTCAGGACCCTTGGATTTCCCTCCCCCTTTGGATTCTAAGTG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000002880.7
ENSMUST00000165079.8
ENSMUST00000221104.2
CDS-3UTR TCA 90 bp AAATCCAAGGGTCCTGAAGCTTGGGTGTCACTGGCAGGGATCGGGGACGACCTTCTGAAACAAACTTGGTaGGGTTCTGAGCCAGGACCA +
Preference number: 4 (lower is better)
Translates to: KSKGPEAWVSLAGIGDDLLKQTW*GSEPGP
Trigger: TGGTCCTGGCTCAGAACCTCACCAAGTTTGTTTCAG...AAGGTCGTCCCCGATCCCTGCCAGTGACACCCAAGCTTCAGGACCCTTGGATTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000002880.7
ENSMUST00000165079.8
ENSMUST00000221104.2
CDS-3UTR GCA 90 bp AAATCCAAGGGTCCTGAAGCTTGGGTGTCACTGGCAGGGATCGGGGACGACCTTCTGTCTCTTACATTCTaGCTCAGCCCAGTTCAGGAC +
Preference number: 4 (lower is better)
Translates to: KSKGPEAWVSLAGIGDDLLSLTF*LSPVQD
Trigger: GTCCTGAACTGGGCTGAGGCAGAATGTAAGAGACAG...AAGGTCGTCCCCGATCCCTGCCAGTGACACCCAAGCTTCAGGACCCTTGGATTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000002880.7
ENSMUST00000165079.8
ENSMUST00000221104.2
CDS-3UTR GCA 90 bp AAATCCAAGGGTCCTGAAGCTTGGGTGTCACTGGCAGGGATCGGGGACGACCTTGCTACCTTCCCACACTaGACCTCTGTCATTCCTTCT +
Preference number: 4 (lower is better)
Translates to: KSKGPEAWVSLAGIGDDLATFPH*TSVIPS
Trigger: AGAAGGAATGACAGAGGTGCAGTGTGGGAAGGTAGC...AAGGTCGTCCCCGATCCCTGCCAGTGACACCCAAGCTTCAGGACCCTTGGATTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000002880.7
ENSMUST00000165079.8
ENSMUST00000221104.2
CDS-3UTR CCA 90 bp ACGACCTTGGACCCAAGTCTTCCTTCCACCTGTGGAATGCTGTCTAGGGTCAGCACTTCCCAGCATCTCTaGGTCAGTTCAGGCTCCTCA +
Preference number: 4 (lower is better)
Translates to: TTLDPSLPSTCGMLSRVSTSQHL*VSSGSS
Trigger: TGAGGAGCCTGAACTGACCCAGAGATGCTGGGAAGT...GCTGACCCTAGACAGCATTCCACAGGTGGAAGGAAGACTTGGGTCCAAGGTCGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000002880.7
ENSMUST00000165079.8
ENSMUST00000221104.2
CDS-3UTR TCA 90 bp CACTGCACTTACTGTGTGGACTCTATGGAGGAAGAGCCTGGTGGCAAGTCCACTCAGCTTGTGCATCAATaGCTTCCCAGCATCTCTGGG +
Preference number: 4 (lower is better)
Translates to: HCTYCVDSMEEEPGGKSTQLVHQ*LPSISG
Trigger: CCCAGAGATGCTGGGAAGTCATTGATGCACAAGCTG...AGTGGACTTGCCACCAGGCTCTTCCTCCATAGAGTCCACACAGTAAGTGCAGTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000002880.7
ENSMUST00000165079.8
ENSMUST00000221104.2
CDS-3UTR TCA 90 bp CACTTAGAATCCAAAGGGGGAGGGAAATCCAAGGGTCCTGAAGCTTGGGTGTCAAACTTGGTGAGGTTCTaGGCCAGGACCATCCCTAGC +
Preference number: 4 (lower is better)
Translates to: HLESKGGGKSKGPEAWVSNLVRF*ARTIPS
Trigger: GCTAGGGATGGTCCTGGCTCAGAACCTCACCAAGTT...TGACACCCAAGCTTCAGGACCCTTGGATTTCCCTCCCCCTTTGGATTCTAAGTG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000002880.7
ENSMUST00000165079.8
ENSMUST00000221104.2
CDS-3UTR TCA 90 bp TGCACCTCCACTGCACTTACTGTGTGGACTCTATGGAGGAAGAGCCTGGTGGCACTGAAACAAACTTGGTaGGGTTCTGAGCCAGGACCA +
Preference number: 4 (lower is better)
Translates to: CTSTALTVWTLWRKSLVALKQTW*GSEPGP
Trigger: TGGTCCTGGCTCAGAACCTCACCAAGTTTGTTTCAG...TGCCACCAGGCTCTTCCTCCATAGAGTCCACACAGTAAGTGCAGTGGAGGTGCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000002880.7
ENSMUST00000165079.8
ENSMUST00000221104.2
CDS-3UTR TCA 90 bp ACGACCTTGGACCCAAGTCTTCCTTCCACCTGTGGAATGCTGTCTAGGGTCAGCCTGAAACAAACTTGGTaGGGTTCTGAGCCAGGACCA +
Preference number: 4 (lower is better)
Translates to: TTLDPSLPSTCGMLSRVSLKQTW*GSEPGP
Trigger: TGGTCCTGGCTCAGAACCTCACCAAGTTTGTTTCAG...GCTGACCCTAGACAGCATTCCACAGGTGGAAGGAAGACTTGGGTCCAAGGTCGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000002880.7
ENSMUST00000165079.8
ENSMUST00000221104.2
CDS-3UTR TCA 90 bp AAGGCAGCTGGAAGTGTCCTGCACCTCCACTGCACTTACTGTGTGGACTCTATGGGAATCTGTCCACCCTaGACTCCAGTCCCATTGGTA +
Preference number: 4 (lower is better)
Translates to: KAAGSVLHLHCTYCVDSMGICPP*TPVPLV
Trigger: TACCAATGGGACTGGAGTTCAGGGTGGACAGATTCC...CATAGAGTCCACACAGTAAGTGCAGTGGAGGTGCAGGACACTTCCAGCTGCCTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000002880.7
ENSMUST00000165079.8
ENSMUST00000221104.2
CDS-3UTR GCA 90 bp GGGACGACCTTGGACCCAAGTCTTCCTTCCACCTGTGGAATGCTGTCTAGGGTCGGCCATTTCAGCTTGTaGATCAATGACTTCCCAGCA +
Preference number: 4 (lower is better)
Translates to: GTTLDPSLPSTCGMLSRVGHFSL*INDFPA
Trigger: TGCTGGGAAGTCATTGATGCACAAGCTGAAATGGCC...GACCCTAGACAGCATTCCACAGGTGGAAGGAAGACTTGGGTCCAAGGTCGTCCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000002880.7
ENSMUST00000165079.8
ENSMUST00000221104.2
CDS-3UTR GCA 90 bp TGCACCTCCACTGCACTTACTGTGTGGACTCTATGGAGGAAGAGCCTGGTGGCACTGTCTCTTACATTCTaGCTCAGCCCAGTTCAGGAC +
Preference number: 4 (lower is better)
Translates to: CTSTALTVWTLWRKSLVALSLTF*LSPVQD
Trigger: GTCCTGAACTGGGCTGAGGCAGAATGTAAGAGACAG...TGCCACCAGGCTCTTCCTCCATAGAGTCCACACAGTAAGTGCAGTGGAGGTGCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000002880.7
ENSMUST00000165079.8
ENSMUST00000221104.2
CDS-3UTR CCA 90 bp CAGGTAGGGGACCATTGGAAGGTAACCACCCCATCCTTCCAGACCCAGCGCACATCCACATCGGGAATGTaGATTTCTGACTTCACTTCC +
Preference number: 4 (lower is better)
Translates to: QVGDHWKVTTPSFQTQRTSTSGM*ISDFTS
Trigger: GGAAGTGAAGTCAGAAATCCACATTCCCGATGTGGA...TGTGCGCTGGGTCTGGAAGGATGGGGTGGTTACCTTCCAATGGTCCCCTACCTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000223368.2
CDS-3UTR TCA 90 bp CAACGTAGGCTGAAATCACTTAGAATCCAAAGGGGGAGGGAAATCCAAGGGTCCTCTTGTTGTGAGGAGTaGCTGGGAGGCCCTGTCTCT +
Preference number: 4 (lower is better)
Translates to: QRRLKSLRIQRGREIQGSSCCEE*LGGPVS
Trigger: AGAGACAGGGCCTCCCAGTCACTCCTCACAACAAGA...GGACCCTTGGATTTCCCTCCCCCTTTGGATTCTAAGTGATTTCAGCCTACGTTG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000002880.7
ENSMUST00000165079.8
ENSMUST00000221104.2
CDS-3UTR TCA 90 bp CAACGTAGGCTGAAATCACTTAGAATCCAAAGGGGGAGGGAAATCCAAGGGTCCAACTTGGTGAGGTTCTaGGCCAGGACCATCCCTAGC +
Preference number: 4 (lower is better)
Translates to: QRRLKSLRIQRGREIQGSNLVRF*ARTIPS
Trigger: GCTAGGGATGGTCCTGGCTCAGAACCTCACCAAGTT...GGACCCTTGGATTTCCCTCCCCCTTTGGATTCTAAGTGATTTCAGCCTACGTTG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000002880.7
ENSMUST00000165079.8
ENSMUST00000221104.2
CDS-3UTR GCA 90 bp AAATCCAAGGGTCCTGAAGCTTGGGTGTCACTGGCAGGGATCGGGGACGACCTTAGACTGGGAAAGTGTTaGTGGATCCGTCTGAAACAA +
Preference number: 4 (lower is better)
Translates to: KSKGPEAWVSLAGIGDDLRLGKC*WIRLKQ
Trigger: TTGTTTCAGACGGATCCAGCAACACTTTCCCAGTCT...AAGGTCGTCCCCGATCCCTGCCAGTGACACCCAAGCTTCAGGACCCTTGGATTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000002880.7
ENSMUST00000165079.8
ENSMUST00000221104.2
CDS-3UTR GCA 90 bp AGTAAGGCAGCTGGAAGTGTCCTGCACCTCCACTGCACTTACTGTGTGGACTCTGCTACCTTCCCACACTaGACCTCTGTCATTCCTTCT +
Preference number: 4 (lower is better)
Translates to: SKAAGSVLHLHCTYCVDSATFPH*TSVIPS
Trigger: AGAAGGAATGACAGAGGTGCAGTGTGGGAAGGTAGC...AGAGTCCACACAGTAAGTGCAGTGGAGGTGCAGGACACTTCCAGCTGCCTTACT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000002880.7
ENSMUST00000165079.8
ENSMUST00000221104.2
CDS-3UTR CCA 90 bp GGCTTGAATGGGAGGCCTCAACGTAGGCTGAAATCACTTAGAATCCAAAGGGGGACTTCCCAGCATCTCTaGGTCAGTTCAGGCTCCTCA +
Preference number: 4 (lower is better)
Translates to: GLNGRPQRRLKSLRIQRGTSQHL*VSSGSS
Trigger: TGAGGAGCCTGAACTGACCCAGAGATGCTGGGAAGT...CCCCCTTTGGATTCTAAGTGATTTCAGCCTACGTTGAGGCCTCCCATTCAAGCC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000002880.7
ENSMUST00000165079.8
ENSMUST00000221104.2
CDS-3UTR CCA 90 bp GGCTTGAATGGGAGGCCTCAACGTAGGCTGAAATCACTTAGAATCCAAAGGGGGGTTGTGAGGAGTGACTaGGAGGCCCTGTCTCTTACA +
Preference number: 4 (lower is better)
Translates to: GLNGRPQRRLKSLRIQRGVVRSD*EALSLT
Trigger: TGTAAGAGACAGGGCCTCCCAGTCACTCCTCACAAC...CCCCCTTTGGATTCTAAGTGATTTCAGCCTACGTTGAGGCCTCCCATTCAAGCC
52% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 3 transcripts:
ENSMUST00000002880.7
ENSMUST00000165079.8
ENSMUST00000221104.2
CDS-3UTR CCA 90 bp AAGGCAGCTGGAAGTGTCCTGCACCTCCACTGCACTTACTGTGTGGACTCTATGCAAGGAGGGGCTTTTTaGCAGCAGTGTACCAAAGGA +
Preference number: 4 (lower is better)
Translates to: KAAGSVLHLHCTYCVDSMQGGAF*QQCTKG
Trigger: TCCTTTGGTACACTGCTGCCAAAAAGCCCCTCCTTG...CATAGAGTCCACACAGTAAGTGCAGTGGAGGTGCAGGACACTTCCAGCTGCCTT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000002880.7
ENSMUST00000165079.8
ENSMUST00000221104.2
CDS-3UTR CCA 90 bp GGGACGACCTTGGACCCAAGTCTTCCTTCCACCTGTGGAATGCTGTCTAGGGTCCTGGGAAAGTGTTGCTaGATCCGTCTGAAACAAACT +
Preference number: 4 (lower is better)
Translates to: GTTLDPSLPSTCGMLSRVLGKCC*IRLKQT
Trigger: AGTTTGTTTCAGACGGATCCAGCAACACTTTCCCAG...GACCCTAGACAGCATTCCACAGGTGGAAGGAAGACTTGGGTCCAAGGTCGTCCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000002880.7
ENSMUST00000165079.8
ENSMUST00000221104.2
CDS-3UTR TCA 90 bp CACTGCACTTACTGTGTGGACTCTATGGAGGAAGAGCCTGGTGGCAAGTCCACTGGGAATGTGGATTTCTaGCTTCACTTCCGCAAGATC +
Preference number: 4 (lower is better)
Translates to: HCTYCVDSMEEEPGGKSTGNVDF*LHFRKI
Trigger: GATCTTGCGGAAGTGAAGTCAGAAATCCACATTCCC...AGTGGACTTGCCACCAGGCTCTTCCTCCATAGAGTCCACACAGTAAGTGCAGTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000002880.7
ENSMUST00000165079.8
ENSMUST00000221104.2
CDS-3UTR TCA 90 bp CACAACCTCTGGGGTTGTAGCAAACAGGTAGGGGACCATTGGAAGGTAACCACCGGGAATGTGGATTTCTaGCTTCACTTCCGCAAGATC +
Preference number: 4 (lower is better)
Translates to: HNLWGCSKQVGDHWKVTTGNVDF*LHFRKI
Trigger: GATCTTGCGGAAGTGAAGTCAGAAATCCACATTCCC...GGTGGTTACCTTCCAATGGTCCCCTACCTGTTTGCTACAACCCCAGAGGTTGTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000223368.2
CDS-3UTR GCA 90 bp ACGACCTTGGACCCAAGTCTTCCTTCCACCTGTGGAATGCTGTCTAGGGTCAGCATGATCTCCAGTGTCTaGCGGTCAATTTCACAGAAG +
Preference number: 4 (lower is better)
Translates to: TTLDPSLPSTCGMLSRVSMISSV*RSISQK
Trigger: CTTCTGTGAAATTGACCGGCAGACACTGGAGATCAT...GCTGACCCTAGACAGCATTCCACAGGTGGAAGGAAGACTTGGGTCCAAGGTCGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000002880.7
ENSMUST00000165079.8
ENSMUST00000221104.2
CDS-3UTR GCA 90 bp CACTTAGAATCCAAAGGGGGAGGGAAATCCAAGGGTCCTGAAGCTTGGGTGTCACTGTCTCTTACATTCTaGCTCAGCCCAGTTCAGGAC +
Preference number: 4 (lower is better)
Translates to: HLESKGGGKSKGPEAWVSLSLTF*LSPVQD
Trigger: GTCCTGAACTGGGCTGAGGCAGAATGTAAGAGACAG...TGACACCCAAGCTTCAGGACCCTTGGATTTCCCTCCCCCTTTGGATTCTAAGTG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000002880.7
ENSMUST00000165079.8
ENSMUST00000221104.2
CDS-3UTR GCA 90 bp GATCGGGGACGACCTTGGACCCAAGTCTTCCTTCCACCTGTGGAATGCTGTCTAAGACTGGGAAAGTGTTaGTGGATCCGTCTGAAACAA +
Preference number: 4 (lower is better)
Translates to: DRGRPWTQVFLPPVECCLRLGKC*WIRLKQ
Trigger: TTGTTTCAGACGGATCCAGCAACACTTTCCCAGTCT...TAGACAGCATTCCACAGGTGGAAGGAAGACTTGGGTCCAAGGTCGTCCCCGATC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000002880.7
ENSMUST00000165079.8
ENSMUST00000221104.2
CDS-3UTR CCA 90 bp ACGACCTTGGACCCAAGTCTTCCTTCCACCTGTGGAATGCTGTCTAGGGTCAGCTCCACATCGGGAATGTaGATTTCTGACTTCACTTCC +
Preference number: 4 (lower is better)
Translates to: TTLDPSLPSTCGMLSRVSSTSGM*ISDFTS
Trigger: GGAAGTGAAGTCAGAAATCCACATTCCCGATGTGGA...GCTGACCCTAGACAGCATTCCACAGGTGGAAGGAAGACTTGGGTCCAAGGTCGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000002880.7
ENSMUST00000165079.8
ENSMUST00000221104.2
CDS-3UTR CCA 90 bp ACGACCTTGGACCCAAGTCTTCCTTCCACCTGTGGAATGCTGTCTAGGGTCAGCCTGGGAAAGTGTTGCTaGATCCGTCTGAAACAAACT +
Preference number: 4 (lower is better)
Translates to: TTLDPSLPSTCGMLSRVSLGKCC*IRLKQT
Trigger: AGTTTGTTTCAGACGGATCCAGCAACACTTTCCCAG...GCTGACCCTAGACAGCATTCCACAGGTGGAAGGAAGACTTGGGTCCAAGGTCGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000002880.7
ENSMUST00000165079.8
ENSMUST00000221104.2
CDS-3UTR CCA 90 bp ATTTGTGGCTTGAATGGGAGGCCTCAACGTAGGCTGAAATCACTTAGAATCCAAGTGTCCTGCTCCACCTaGACCGGGTGCTCAAACCAG +
Preference number: 4 (lower is better)
Translates to: ICGLNGRPQRRLKSLRIQVSCST*TGCSNQ
Trigger: CTGGTTTGAGCACCCGGTCCAGGTGGAGCAGGACAC...TTGGATTCTAAGTGATTTCAGCCTACGTTGAGGCCTCCCATTCAAGCCACAAAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000002880.7
ENSMUST00000165079.8
ENSMUST00000221104.2
CDS-3UTR CCA 90 bp GCACCTCCACTGCACTTACTGTGTGGACTCTATGGAGGAAGAGCCTGGTGGCAAATAGAAGATGAGCTCTaGAATCTGTCCACCCTGAAC +
Preference number: 4 (lower is better)
Translates to: APPLHLLCGLYGGRAWWQIEDEL*NLSTLN
Trigger: GTTCAGGGTGGACAGATTCCAGAGCTCATCTTCTAT...TTGCCACCAGGCTCTTCCTCCATAGAGTCCACACAGTAAGTGCAGTGGAGGTGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000002880.7
ENSMUST00000165079.8
ENSMUST00000221104.2
CDS-3UTR TCA 90 bp ATTTGTGGCTTGAATGGGAGGCCTCAACGTAGGCTGAAATCACTTAGAATCCAAACATGCCTCTTGTTGTaGGGAGTGACTGGGAGGCCC +
Preference number: 4 (lower is better)
Translates to: ICGLNGRPQRRLKSLRIQTCLLL*GVTGRP
Trigger: GGGCCTCCCAGTCACTCCTCACAACAAGAGGCATGT...TTGGATTCTAAGTGATTTCAGCCTACGTTGAGGCCTCCCATTCAAGCCACAAAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000002880.7
ENSMUST00000165079.8
ENSMUST00000221104.2
CDS-3UTR CCA 90 bp GCTGGAAGTGTCCTGCACCTCCACTGCACTTACTGTGTGGACTCTATGGAGGAATCCACATCGGGAATGTaGATTTCTGACTTCACTTCC +
Preference number: 4 (lower is better)
Translates to: AGSVLHLHCTYCVDSMEESTSGM*ISDFTS
Trigger: GGAAGTGAAGTCAGAAATCCACATTCCCGATGTGGA...TTCCTCCATAGAGTCCACACAGTAAGTGCAGTGGAGGTGCAGGACACTTCCAGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000002880.7
ENSMUST00000165079.8
ENSMUST00000221104.2
CDS-3UTR CCA 90 bp CAACGTAGGCTGAAATCACTTAGAATCCAAAGGGGGAGGGAAATCCAAGGGTCCCAAGGAGGGGCTTTTTaGCAGCAGTGTACCAAAGGA +
Preference number: 4 (lower is better)
Translates to: QRRLKSLRIQRGREIQGSQGGAF*QQCTKG
Trigger: TCCTTTGGTACACTGCTGCCAAAAAGCCCCTCCTTG...GGACCCTTGGATTTCCCTCCCCCTTTGGATTCTAAGTGATTTCAGCCTACGTTG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000002880.7
ENSMUST00000165079.8
ENSMUST00000221104.2
CDS-3UTR TCA 90 bp CAACGTAGGCTGAAATCACTTAGAATCCAAAGGGGGAGGGAAATCCAAGGGTCCGGGAATGTGGATTTCTaGCTTCACTTCCGCAAGATC +
Preference number: 4 (lower is better)
Translates to: QRRLKSLRIQRGREIQGSGNVDF*LHFRKI
Trigger: GATCTTGCGGAAGTGAAGTCAGAAATCCACATTCCC...GGACCCTTGGATTTCCCTCCCCCTTTGGATTCTAAGTGATTTCAGCCTACGTTG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000002880.7
ENSMUST00000165079.8
ENSMUST00000221104.2
CDS-3UTR TCA 90 bp AAGTTTCAGACTCTGGCTGATAGAGAAAGCCAAGCCTTGAATGGTATCAGTAAGCCTCCCTGGTCACAATaGTCTCCAGTGTCTGCCGGT +
Preference number: 4 (lower is better)
Translates to: KFQTLADRESQALNGISKPPWSQ*SPVSAG
Trigger: ACCGGCAGACACTGGAGATCATTGTGACCAGGGAGG...CTTACTGATACCATTCAAGGCTTGGCTTTCTCTATCAGCCAGAGTCTGAAACTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000002880.7
ENSMUST00000165079.8
ENSMUST00000221104.2
CDS-3UTR CCA 90 bp GCTGGAAGTGTCCTGCACCTCCACTGCACTTACTGTGTGGACTCTATGGAGGAAGGACACAAGCATTTTTaGCTTCCAGACTTGTTTCCA +
Preference number: 4 (lower is better)
Translates to: AGSVLHLHCTYCVDSMEEGHKHF*LPDLFP
Trigger: TGGAAACAAGTCTGGAAGCCAAAAATGCTTGTGTCC...TTCCTCCATAGAGTCCACACAGTAAGTGCAGTGGAGGTGCAGGACACTTCCAGC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000002880.7
ENSMUST00000165079.8
ENSMUST00000221104.2
CDS-3UTR CCA 90 bp AATGGGAGGCCTCAACGTAGGCTGAAATCACTTAGAATCCAAAGGGGGAGGGAATCCACATCGGGAATGTaGATTTCTGACTTCACTTCC +
Preference number: 4 (lower is better)
Translates to: NGRPQRRLKSLRIQRGRESTSGM*ISDFTS
Trigger: GGAAGTGAAGTCAGAAATCCACATTCCCGATGTGGA...TTCCCTCCCCCTTTGGATTCTAAGTGATTTCAGCCTACGTTGAGGCCTCCCATT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000002880.7
ENSMUST00000165079.8
ENSMUST00000221104.2
CDS-3UTR CCA 90 bp TTTCAGACTCTGGCTGATAGAGAAAGCCAAGCCTTGAATGGTATCAGTAAGGCAGTTGTGAGGAGTGACTaGGAGGCCCTGTCTCTTACA +
Preference number: 4 (lower is better)
Translates to: FQTLADRESQALNGISKAVVRSD*EALSLT
Trigger: TGTAAGAGACAGGGCCTCCCAGTCACTCCTCACAAC...TGCCTTACTGATACCATTCAAGGCTTGGCTTTCTCTATCAGCCAGAGTCTGAAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000002880.7
ENSMUST00000165079.8
ENSMUST00000221104.2
CDS-3UTR CCA 90 bp AAGTTTCAGACTCTGGCTGATAGAGAAAGCCAAGCCTTGAATGGTATCAGTAAGGAAGACTGGAAGCGGTaGCACCTTTGTGGAGCAAGG +
Preference number: 4 (lower is better)
Translates to: KFQTLADRESQALNGISKEDWKR*HLCGAR
Trigger: CCTTGCTCCACAAAGGTGCCACCGCTTCCAGTCTTC...CTTACTGATACCATTCAAGGCTTGGCTTTCTCTATCAGCCAGAGTCTGAAACTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000002880.7
ENSMUST00000165079.8
ENSMUST00000221104.2
CDS-3UTR CCA 90 bp CAACGTAGGCTGAAATCACTTAGAATCCAAAGGGGGAGGGAAATCCAAGGGTCCCTGGGAAAGTGTTGCTaGATCCGTCTGAAACAAACT +
Preference number: 4 (lower is better)
Translates to: QRRLKSLRIQRGREIQGSLGKCC*IRLKQT
Trigger: AGTTTGTTTCAGACGGATCCAGCAACACTTTCCCAG...GGACCCTTGGATTTCCCTCCCCCTTTGGATTCTAAGTGATTTCAGCCTACGTTG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000002880.7
ENSMUST00000165079.8
ENSMUST00000221104.2
CDS-3UTR CCA 90 bp CAACGTAGGCTGAAATCACTTAGAATCCAAAGGGGGAGGGAAATCCAAGGGTCCATAGAAGATGAGCTCTaGAATCTGTCCACCCTGAAC +
Preference number: 4 (lower is better)
Translates to: QRRLKSLRIQRGREIQGSIEDEL*NLSTLN
Trigger: GTTCAGGGTGGACAGATTCCAGAGCTCATCTTCTAT...GGACCCTTGGATTTCCCTCCCCCTTTGGATTCTAAGTGATTTCAGCCTACGTTG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000002880.7
ENSMUST00000165079.8
ENSMUST00000221104.2
CDS-3UTR CCA 90 bp TTTCAGACTCTGGCTGATAGAGAAAGCCAAGCCTTGAATGGTATCAGTAAGGCACAAGGAGGGGCTTTTTaGCAGCAGTGTACCAAAGGA +
Preference number: 4 (lower is better)
Translates to: FQTLADRESQALNGISKAQGGAF*QQCTKG
Trigger: TCCTTTGGTACACTGCTGCCAAAAAGCCCCTCCTTG...TGCCTTACTGATACCATTCAAGGCTTGGCTTTCTCTATCAGCCAGAGTCTGAAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000002880.7
ENSMUST00000165079.8
ENSMUST00000221104.2
3UTR CAA 72 bp AAGTTTCAGACTCTGGCTGATAGAGAAAGCCAAGCCTaGAATGGTATCAGTAAGGCAGCTGGAAGTGTCCTG +
Preference number: 4 (lower is better)
Translates to: KFQTLADRESQA*NGISKAAGSVL
Trigger: CAGGACACTTCCAGCTGCCTTACTGATACCATTCAAGGCTTGGCTTTCTCTATCAGCCAGAGTCTGAAACTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000002880.7
ENSMUST00000165079.8
ENSMUST00000221104.2
CDS-3UTR GCA 90 bp TTTCAGACTCTGGCTGATAGAGAAAGCCAAGCCTTGAATGGTATCAGTAAGGCAGGCCATTTCAGCTTGTaGATCAATGACTTCCCAGCA +
Preference number: 4 (lower is better)
Translates to: FQTLADRESQALNGISKAGHFSL*INDFPA
Trigger: TGCTGGGAAGTCATTGATGCACAAGCTGAAATGGCC...TGCCTTACTGATACCATTCAAGGCTTGGCTTTCTCTATCAGCCAGAGTCTGAAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000002880.7
ENSMUST00000165079.8
ENSMUST00000221104.2
CDS-3UTR CCA 90 bp AAGTTTCAGACTCTGGCTGATAGAGAAAGCCAAGCCTTGAATGGTATCAGTAAGATAGAAGATGAGCTCTaGAATCTGTCCACCCTGAAC +
Preference number: 4 (lower is better)
Translates to: KFQTLADRESQALNGISKIEDEL*NLSTLN
Trigger: GTTCAGGGTGGACAGATTCCAGAGCTCATCTTCTAT...CTTACTGATACCATTCAAGGCTTGGCTTTCTCTATCAGCCAGAGTCTGAAACTT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000002880.7
ENSMUST00000165079.8
ENSMUST00000221104.2
CDS GCA 90 bp AGAGGGACTGGCGGGCGGGTACAGTTCCGCGGCCATCTTCGCTACTaGCGGGGCGGGCTCCGCACTGGTCGGTGCTGCGCCGCGCGCCTT +
Preference number: 5 (lower is better)
Translates to: RGTGGRVQFRGHLRY*RGGLRTGRCCAARL
Trigger: AAGGCGCGCGGCGCAGCACCGACCAGTGCGGAGCCCGCCCCGGCAGTAGCGAAGATGGCCGCGGAACTGTACCCGCCCGCCAGTCCCTCT
73% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000002880.7
CDS CCA 90 bp CACTGGTCGGTGCTGCGCCGCGCGCCTTCGCGCCGCGACGGGGCCTaGGAAACGGCTCTGCGAGCACCAGCAGGGAGGTTAGGCACTGCG +
Preference number: 5 (lower is better)
Translates to: HWSVLRRAPSRRDGA*ETALRAPAGRLGTA
Trigger: CGCAGTGCCTAACCTCCCTGCTGGTGCTCGCAGAGCCGTTTCCCAGGCCCCGTCGCGGCGCGAAGGCGCGCGGCGCAGCACCGACCAGTG
73% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000002880.7
CDS GCA 90 bp GGCTGCGCCTGCCGCGTTGCTGTTGGCGATGTCGGTGGCAGTAGCTaGAGAGGGACTGGCGGGCGGGTACAGTTCCGCGGCCATCTTCGC +
Preference number: 5 (lower is better)
Translates to: GCACRVAVGDVGGSS*RGTGGRVQFRGHLR
Trigger: GCGAAGATGGCCGCGGAACTGTACCCGCCCGCCAGTCCCTCTGCAGCTACTGCCACCGACATCGCCAACAGCAACGCGGCAGGCGCAGCC
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000002880.7
CDS GCA 90 bp GCAGGGCGGGCAGCAAAGCCCGACCTTCGTGCTCTCGGCTGCGCCTaGCGCGTTGCTGTTGGCGATGTCGGTGGCAGTAGCTGCAGAGGG +
Preference number: 5 (lower is better)
Translates to: AGRAAKPDLRALGCA*RVAVGDVGGSSCRG
Trigger: CCCTCTGCAGCTACTGCCACCGACATCGCCAACAGCAACGCGGCAGGCGCAGCCGAGAGCACGAAGGTCGGGCTTTGCTGCCCGCCCTGC
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000002880.7
ENSMUST00000165079.8
ENSMUST00000221104.2
ENSMUST00000221500.2
ENSMUST00000222209.2
ENSMUST00000223287.2
CDS GCA 90 bp TGCCAGGCAGGGCGGGCAGCAAAGCCCGACCTTCGTGCTCTCGGCTaGGCCTGCCGCGTTGCTGTTGGCGATGTCGGTGGCAGTAGCTGC +
Preference number: 5 (lower is better)
Translates to: CQAGRAAKPDLRALG*ACRVAVGDVGGSSC
Trigger: GCAGCTACTGCCACCGACATCGCCAACAGCAACGCGGCAGGCGCAGCCGAGAGCACGAAGGTCGGGCTTTGCTGCCCGCCCTGCCTGGCA
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000002880.7
ENSMUST00000165079.8
ENSMUST00000221104.2
ENSMUST00000221500.2
ENSMUST00000222209.2
ENSMUST00000223287.2
CDS GCA 90 bp GCCGACAGCCAAGACATACTCTCGCGCAGCGTAGGATGGAAGGACTaGCAGTTGGGGCTCTCGGGATTGTTGTTGTCTGGCAAGGGCGGC +
Preference number: 5 (lower is better)
Translates to: ADSQDILSRSVGWKD*QLGLSGLLLSGKGG
Trigger: GCCGCCCTTGCCAGACAACAACAATCCCGAGAGCCCCAACTGGCAGTCCTTCCATCCTACGCTGCGCGAGAGTATGTCTTGGCTGTCGGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000222209.2
ENSMUST00000223287.2
CDS-3UTR CAA 90 bp AGGGTCCTGAAGCTTGGGTGTCACTGGCAGGGATCGGGGACGACCTTGGACCCAACAGCCTCCTTGGTATaGAGGGCCTCCCTGGTCACA +
Preference number: 5 (lower is better)
Translates to: RVLKLGCHWQGSGTTLDPTASLV*RASLVT
Trigger: TGTGACCAGGGAGGCCCTCAATACCAAGGAGGCTGT...TGGGTCCAAGGTCGTCCCCGATCCCTGCCAGTGACACCCAAGCTTCAGGACCCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000002880.7
ENSMUST00000165079.8
ENSMUST00000221104.2
CDS-3UTR CAA 90 bp GATCGGGGACGACCTTGGACCCAAGTCTTCCTTCCACCTGTGGAATGCTGTCTAAAGTTGACGCAGGCCTaGGCCAGGGCAGGCACGATG +
Preference number: 5 (lower is better)
Translates to: DRGRPWTQVFLPPVECCLKLTQA*ARAGTM
Trigger: CATCGTGCCTGCCCTGGCCAAGGCCTGCGTCAACTT...TAGACAGCATTCCACAGGTGGAAGGAAGACTTGGGTCCAAGGTCGTCCCCGATC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000002880.7
ENSMUST00000165079.8
ENSMUST00000221104.2
CDS-3UTR CAA 90 bp TTGGACCCAAGTCTTCCTTCCACCTGTGGAATGCTGTCTAGGGTCAGCGGACACACAGCCAAGACATACTaGTGGGCGGGCACACGCCTG +
Preference number: 5 (lower is better)
Translates to: LDPSLPSTCGMLSRVSGHTAKTY*WAGTRL
Trigger: CAGGCGTGTGCCCGCCCACAAGTATGTCTTGGCTGT...GTGTCCGCTGACCCTAGACAGCATTCCACAGGTGGAAGGAAGACTTGGGTCCAA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000002880.7
ENSMUST00000165079.8
ENSMUST00000221104.2
CDS-3UTR CAA 90 bp GCTGGAAGTGTCCTGCACCTCCACTGCACTTACTGTGTGGACTCTATGGAGGAAAAGTTGACGCAGGCCTaGGCCAGGGCAGGCACGATG +
Preference number: 5 (lower is better)
Translates to: AGSVLHLHCTYCVDSMEEKLTQA*ARAGTM
Trigger: CATCGTGCCTGCCCTGGCCAAGGCCTGCGTCAACTT...TTCCTCCATAGAGTCCACACAGTAAGTGCAGTGGAGGTGCAGGACACTTCCAGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000002880.7
ENSMUST00000165079.8
ENSMUST00000221104.2
CDS-3UTR CAA 90 bp TGTGTGGACTCTATGGAGGAAGAGCCTGGTGGCAAGTCCACTCCAACCTTACGCTGGAAGGACTGCCAGTaGGGGCTCTCGGGATTGTTG +
Preference number: 5 (lower is better)
Translates to: CVDSMEEEPGGKSTPTLRWKDCQ*GLSGLL
Trigger: CAACAATCCCGAGAGCCCCAACTGGCAGTCCTTCCA...GCGTAAGGTTGGAGTGGACTTGCCACCAGGCTCTTCCTCCATAGAGTCCACACA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000002880.7
ENSMUST00000165079.8
ENSMUST00000221104.2
CDS-3UTR CAA 90 bp CACAACCTCTGGGGTTGTAGCAAACAGGTAGGGGACCATTGGAAGGTAACCACCACAGCCAAGACATACTaGTGGGCGGGCACACGCCTG +
Preference number: 5 (lower is better)
Translates to: HNLWGCSKQVGDHWKVTTTAKTY*WAGTRL
Trigger: CAGGCGTGTGCCCGCCCACAAGTATGTCTTGGCTGT...GGTGGTTACCTTCCAATGGTCCCCTACCTGTTTGCTACAACCCCAGAGGTTGTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000223368.2
CDS-3UTR CAA 90 bp ACCCAGCGCACAGCACTTACTTTAGCAAGACCAAGAAGGCAGCAGGCTCCACATTGGAAGGACTGCCAGTaGGGGCTCTCGGGATTGTTG +
Preference number: 5 (lower is better)
Translates to: TQRTALTLARPRRQQAPHWKDCQ*GLSGLL
Trigger: CAACAATCCCGAGAGCCCCAACTGGCAGTCCTTCCA...ATGTGGAGCCTGCTGCCTTCTTGGTCTTGCTAAAGTAAGTGCTGTGCGCTGGGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000222209.2
CDS-3UTR CAA 90 bp CACAACCTCTGGGGTTGTAGCAAACAGGTAGGGGACCATTGGAAGGTAACCACCTGGAAGGACTGCCAGTaGGGGCTCTCGGGATTGTTG +
Preference number: 5 (lower is better)
Translates to: HNLWGCSKQVGDHWKVTTWKDCQ*GLSGLL
Trigger: CAACAATCCCGAGAGCCCCAACTGGCAGTCCTTCCA...GGTGGTTACCTTCCAATGGTCCCCTACCTGTTTGCTACAACCCCAGAGGTTGTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000222209.2
ENSMUST00000223368.2
CDS-3UTR CAA 90 bp CAACGTAGGCTGAAATCACTTAGAATCCAAAGGGGGAGGGAAATCCAAGGGTCCAAGTTGACGCAGGCCTaGGCCAGGGCAGGCACGATG +
Preference number: 5 (lower is better)
Translates to: QRRLKSLRIQRGREIQGSKLTQA*ARAGTM
Trigger: CATCGTGCCTGCCCTGGCCAAGGCCTGCGTCAACTT...GGACCCTTGGATTTCCCTCCCCCTTTGGATTCTAAGTGATTTCAGCCTACGTTG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000002880.7
ENSMUST00000165079.8
ENSMUST00000221104.2
CDS-3UTR CAA 90 bp CACTGCACTTACTGTGTGGACTCTATGGAGGAAGAGCCTGGTGGCAAGTCCACTACAGCCTCCTTGGTATaGAGGGCCTCCCTGGTCACA +
Preference number: 5 (lower is better)
Translates to: HCTYCVDSMEEEPGGKSTTASLV*RASLVT
Trigger: TGTGACCAGGGAGGCCCTCAATACCAAGGAGGCTGT...AGTGGACTTGCCACCAGGCTCTTCCTCCATAGAGTCCACACAGTAAGTGCAGTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000002880.7
ENSMUST00000165079.8
ENSMUST00000221104.2
CDS-3UTR CAA 90 bp CACTTAGAATCCAAAGGGGGAGGGAAATCCAAGGGTCCTGAAGCTTGGGTGTCATGGAAGGACTGCCAGTaGGGGCTCTCGGGATTGTTG +
Preference number: 5 (lower is better)
Translates to: HLESKGGGKSKGPEAWVSWKDCQ*GLSGLL
Trigger: CAACAATCCCGAGAGCCCCAACTGGCAGTCCTTCCA...TGACACCCAAGCTTCAGGACCCTTGGATTTCCCTCCCCCTTTGGATTCTAAGTG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000002880.7
ENSMUST00000165079.8
ENSMUST00000221104.2
CDS-3UTR CAA 90 bp AAATCCAAGGGTCCTGAAGCTTGGGTGTCACTGGCAGGGATCGGGGACGACCTTCAGGGCCATTTCAGCTaGTGCATCAATGACTTCCCA +
Preference number: 5 (lower is better)
Translates to: KSKGPEAWVSLAGIGDDLQGHFS*CINDFP
Trigger: TGGGAAGTCATTGATGCACAAGCTGAAATGGCCCTG...AAGGTCGTCCCCGATCCCTGCCAGTGACACCCAAGCTTCAGGACCCTTGGATTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000002880.7
ENSMUST00000165079.8
ENSMUST00000221104.2
CDS-3UTR CAA 90 bp TTTAGCAAGACCAAGAAGGCAGCAGGCTCCACATCGGGAATGTGGATTTCTGACTGGAAGGACTGCCAGTaGGGGCTCTCGGGATTGTTG +
Preference number: 5 (lower is better)
Translates to: FSKTKKAAGSTSGMWISDWKDCQ*GLSGLL
Trigger: CAACAATCCCGAGAGCCCCAACTGGCAGTCCTTCCA...GTCAGAAATCCACATTCCCGATGTGGAGCCTGCTGCCTTCTTGGTCTTGCTAAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000222209.2
ENSMUST00000223287.2
CDS-3UTR CAA 90 bp TGTGTGGACTCTATGGAGGAAGAGCCTGGTGGCAAGTCCACTCCAACCTTACGCCAGGGCCATTTCAGCTaGTGCATCAATGACTTCCCA +
Preference number: 5 (lower is better)
Translates to: CVDSMEEEPGGKSTPTLRQGHFS*CINDFP
Trigger: TGGGAAGTCATTGATGCACAAGCTGAAATGGCCCTG...GCGTAAGGTTGGAGTGGACTTGCCACCAGGCTCTTCCTCCATAGAGTCCACACA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000002880.7
ENSMUST00000165079.8
ENSMUST00000221104.2
CDS-3UTR CAA 90 bp TTTCAGACTCTGGCTGATAGAGAAAGCCAAGCCTTGAATGGTATCAGTAAGGCAACAGCCAAGACATACTaGTGGGCGGGCACACGCCTG +
Preference number: 5 (lower is better)
Translates to: FQTLADRESQALNGISKATAKTY*WAGTRL
Trigger: CAGGCGTGTGCCCGCCCACAAGTATGTCTTGGCTGT...TGCCTTACTGATACCATTCAAGGCTTGGCTTTCTCTATCAGCCAGAGTCTGAAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000002880.7
ENSMUST00000165079.8
ENSMUST00000221104.2
CDS-3UTR CAA 90 bp ACGACCTTGGACCCAAGTCTTCCTTCCACCTGTGGAATGCTGTCTAGGGTCAGCAGGACACAAGCATTTTaGGCTTCCAGACTTGTTTCC +
Preference number: 5 (lower is better)
Translates to: TTLDPSLPSTCGMLSRVSRTQAF*ASRLVS
Trigger: GGAAACAAGTCTGGAAGCCAAAAATGCTTGTGTCCT...GCTGACCCTAGACAGCATTCCACAGGTGGAAGGAAGACTTGGGTCCAAGGTCGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000002880.7
ENSMUST00000165079.8
ENSMUST00000221104.2
CDS-3UTR CAA 90 bp GATCGGGGACGACCTTGGACCCAAGTCTTCCTTCCACCTGTGGAATGCTGTCTAAGGACACAAGCATTTTaGGCTTCCAGACTTGTTTCC +
Preference number: 5 (lower is better)
Translates to: DRGRPWTQVFLPPVECCLRTQAF*ASRLVS
Trigger: GGAAACAAGTCTGGAAGCCAAAAATGCTTGTGTCCT...TAGACAGCATTCCACAGGTGGAAGGAAGACTTGGGTCCAAGGTCGTCCCCGATC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000002880.7
ENSMUST00000165079.8
ENSMUST00000221104.2
CDS-3UTR CAA 90 bp AATGGGAGGCCTCAACGTAGGCTGAAATCACTTAGAATCCAAAGGGGGAGGGAAAGGACACAAGCATTTTaGGCTTCCAGACTTGTTTCC +
Preference number: 5 (lower is better)
Translates to: NGRPQRRLKSLRIQRGRERTQAF*ASRLVS
Trigger: GGAAACAAGTCTGGAAGCCAAAAATGCTTGTGTCCT...TTCCCTCCCCCTTTGGATTCTAAGTGATTTCAGCCTACGTTGAGGCCTCCCATT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000002880.7
ENSMUST00000165079.8
ENSMUST00000221104.2
CDS-3UTR CAA 90 bp ATTTGTGGCTTGAATGGGAGGCCTCAACGTAGGCTGAAATCACTTAGAATCCAACAGGGCCATTTCAGCTaGTGCATCAATGACTTCCCA +
Preference number: 5 (lower is better)
Translates to: ICGLNGRPQRRLKSLRIQQGHFS*CINDFP
Trigger: TGGGAAGTCATTGATGCACAAGCTGAAATGGCCCTG...TTGGATTCTAAGTGATTTCAGCCTACGTTGAGGCCTCCCATTCAAGCCACAAAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000002880.7
ENSMUST00000165079.8
ENSMUST00000221104.2
CDS CCA 72 bp CGGCCATCTTCGCTACTGCCGGGGCGGGCTCCGCACTaGTCGGTGCTGCGCCGCGCGCCTTCGCGCCGCGAC +
Preference number: 6 (lower is better)
Translates to: RPSSLLPGRAPH*SVLRRAPSRRD
Trigger: GTCGCGGCGCGAAGGCGCGCGGCGCAGCACCGACCAGTGCGGAGCCCGCCCCGGCAGTAGCGAAGATGGCCG
78% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000002880.7
CDS GCA 72 bp GGCGGGCGGGTACAGTTCCGCGGCCATCTTCGCTACTaGCGGGGCGGGCTCCGCACTGGTCGGTGCTGCGCC +
Preference number: 6 (lower is better)
Translates to: GGRVQFRGHLRY*RGGLRTGRCCA
Trigger: GGCGCAGCACCGACCAGTGCGGAGCCCGCCCCGGCAGTAGCGAAGATGGCCGCGGAACTGTACCCGCCCGCC
75% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000002880.7
CDS CCA 72 bp GTGCTGCGCCGCGCGCCTTCGCGCCGCGACGGGGCCTaGGAAACGGCTCTGCGAGCACCAGCAGGGAGGTTA +
Preference number: 6 (lower is better)
Translates to: VLRRAPSRRDGA*ETALRAPAGRL
Trigger: TAACCTCCCTGCTGGTGCTCGCAGAGCCGTTTCCCAGGCCCCGTCGCGGCGCGAAGGCGCGCGGCGCAGCAC
74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000002880.7
CDS GCA 72 bp GGGCGGGCAGCAAAGCCCGACCTTCGTGCTCTCGGCTaGGCCTGCCGCGTTGCTGTTGGCGATGTCGGTGGC +
Preference number: 6 (lower is better)
Translates to: GRAAKPDLRALG*ACRVAVGDVGG
Trigger: GCCACCGACATCGCCAACAGCAACGCGGCAGGCGCAGCCGAGAGCACGAAGGTCGGGCTTTGCTGCCCGCCC
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000002880.7
ENSMUST00000165079.8
ENSMUST00000221104.2
ENSMUST00000221500.2
ENSMUST00000222209.2
ENSMUST00000223287.2
CDS GCA 72 bp GTGCCAGGCAGGGCGGGCAGCAAAGCCCGACCTTCGTaGTCTCGGCTGCGCCTGCCGCGTTGCTGTTGGCGA +
Preference number: 6 (lower is better)
Translates to: VPGRAGSKARPS*SRLRLPRCCWR
Trigger: TCGCCAACAGCAACGCGGCAGGCGCAGCCGAGAGCACGAAGGTCGGGCTTTGCTGCCCGCCCTGCCTGGCAC
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000002880.7
ENSMUST00000165079.8
ENSMUST00000221104.2
ENSMUST00000221500.2
ENSMUST00000222209.2
ENSMUST00000223287.2
CDS CAA 90 bp CAAAGCCCGACCTTCGTGCTCTCGGCTGCGCCTGCCGCGTTGCTGTaGGCGATGTCGGTGGCAGTAGCTGCAGAGGGACTGGCGGGCGGG +
Preference number: 6 (lower is better)
Translates to: QSPTFVLSAAPAALL*AMSVAVAAEGLAGG
Trigger: CCCGCCCGCCAGTCCCTCTGCAGCTACTGCCACCGACATCGCCAACAGCAACGCGGCAGGCGCAGCCGAGAGCACGAAGGTCGGGCTTTG
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000002880.7
ENSMUST00000165079.8
ENSMUST00000221104.2
ENSMUST00000221500.2
ENSMUST00000222209.2
ENSMUST00000223287.2
CDS CAA 90 bp GGGCAGCAAAGCCCGACCTTCGTGCTCTCGGCTGCGCCTGCCGCGTaGCTGTTGGCGATGTCGGTGGCAGTAGCTGCAGAGGGACTGGCG +
Preference number: 6 (lower is better)
Translates to: GQQSPTFVLSAAPAA*LLAMSVAVAAEGLA
Trigger: CGCCAGTCCCTCTGCAGCTACTGCCACCGACATCGCCAACAGCAACGCGGCAGGCGCAGCCGAGAGCACGAAGGTCGGGCTTTGCTGCCC
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000002880.7
ENSMUST00000165079.8
ENSMUST00000221104.2
ENSMUST00000221500.2
ENSMUST00000222209.2
ENSMUST00000223287.2
CDS GCA 72 bp TGCCGCGTTGCTGTTGGCGATGTCGGTGGCAGTAGCTaGAGAGGGACTGGCGGGCGGGTACAGTTCCGCGGC +
Preference number: 6 (lower is better)
Translates to: CRVAVGDVGGSS*RGTGGRVQFRG
Trigger: GCCGCGGAACTGTACCCGCCCGCCAGTCCCTCTGCAGCTACTGCCACCGACATCGCCAACAGCAACGCGGCA
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000002880.7
ENSMUST00000165079.8
ENSMUST00000221104.2
ENSMUST00000221500.2
ENSMUST00000222209.2
ENSMUST00000223287.2
CDS GCA 72 bp GCAGCAAAGCCCGACCTTCGTGCTCTCGGCTGCGCCTaGCGCGTTGCTGTTGGCGATGTCGGTGGCAGTAGC +
Preference number: 6 (lower is better)
Translates to: AAKPDLRALGCA*RVAVGDVGGSS
Trigger: GCTACTGCCACCGACATCGCCAACAGCAACGCGGCAGGCGCAGCCGAGAGCACGAAGGTCGGGCTTTGCTGC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000002880.7
ENSMUST00000165079.8
ENSMUST00000221104.2
ENSMUST00000221500.2
ENSMUST00000222209.2
ENSMUST00000223287.2
CDS CAA 72 bp ACCTTCGTGCTCTCGGCTGCGCCTGCCGCGTTGCTGTaGGCGATGTCGGTGGCAGTAGCTGCAGAGGGACTG +
Preference number: 6 (lower is better)
Translates to: TFVLSAAPAALL*AMSVAVAAEGL
Trigger: CAGTCCCTCTGCAGCTACTGCCACCGACATCGCCAACAGCAACGCGGCAGGCGCAGCCGAGAGCACGAAGGT
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000002880.7
ENSMUST00000165079.8
ENSMUST00000221104.2
ENSMUST00000221500.2
ENSMUST00000222209.2
ENSMUST00000223287.2
CDS GCA 72 bp CAAGACATACTCTCGCGCAGCGTAGGATGGAAGGACTaGCAGTTGGGGCTCTCGGGATTGTTGTTGTCTGGC +
Preference number: 6 (lower is better)
Translates to: QDILSRSVGWKD*QLGLSGLLLSG
Trigger: GCCAGACAACAACAATCCCGAGAGCCCCAACTGGCAGTCCTTCCATCCTACGCTGCGCGAGAGTATGTCTTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000222209.2
ENSMUST00000223287.2