Pregenerated sensors for BTBD35F7 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000095814Ensembl transcript IDs: ENSMUST00000105007.3
Found 22 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CAA 90 bp | TGGAGGGAAGCAGTCACTTCTGGTGGTACTAGACTCCAAAGAATATaGAACTTGTTTTTGGTCTTCTTCACTGTAGTCATTACACAGCCT | + |
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Preference number: 2 (lower is better) Translates to: WREAVTSGGTRLQRI*NLFLVFFTVVITQP Trigger: AGGCTGTGTAATGACTACAGTGAAGAAGACCAAAAACAAGTTCAATATTCTTTGGAGTCTAGTACCACCAGAAGTGACTGCTTCCCTCCA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000105007.3 |
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| 3UTR CAA 90 bp | GAAGCAGTCACTTCTGGTGGTACTAGACTCCAAAGAATATTGAACTaGTTTTTGGTCTTCTTCACTGTAGTCATTACACAGCCTTCATAT | + |
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Preference number: 2 (lower is better) Translates to: EAVTSGGTRLQRILN*FLVFFTVVITQPSY Trigger: ATATGAAGGCTGTGTAATGACTACAGTGAAGAAGACCAAAAACAAGTTCAATATTCTTTGGAGTCTAGTACCACCAGAAGTGACTGCTTC 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000105007.3 |
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| 3UTR CCA 72 bp | CCTTGCAAATATAGTCTCTTCTTTCCATTCCAAGCTTaGATCTCGATGGTAAATTTAAATCAGAAGATTAGG | + |
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Preference number: 3 (lower is better) Translates to: PCKYSLFFPFQA*ISMVNLNQKIR Trigger: CCTAATCTTCTGATTTAAATTTACCATCGAGATCCAAGCTTGGAATGGAAAGAAGAGACTATATTTGCAAGG 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105007.3 |
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| CDS-3UTR TCA 90 bp | CCTTGCAAATATAGTCTCTTCTTTCCATTCCAAGCTTGGATCTCGATGGTAAATGCTGCTGCCAAAACTTaGGGAACTTCCAGAGGTGTT | + |
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Preference number: 4 (lower is better) Translates to: PCKYSLFFPFQAWISMVNAAAKT*GTSRGV Trigger: AACACCTCTGGAAGTTCCTCAAGTTTTGGCAGCAGC...ATTTACCATCGAGATCCAAGCTTGGAATGGAAAGAAGAGACTATATTTGCAAGG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105007.3 |
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| CDS-3UTR TCA 90 bp | ACTTCTGGTGGTACTAGACTCCAAAGAATATTGAACTTGTTTTTGGTCTTCTTCATTCCTTCACACTGCTaGATTACTCGATCCACCCGA | + |
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Preference number: 4 (lower is better) Translates to: TSGGTRLQRILNLFLVFFIPSHC*ITRSTR Trigger: TCGGGTGGATCGAGTAATTCAGCAGTGTGAAGGAAT...GAAGAAGACCAAAAACAAGTTCAATATTCTTTGGAGTCTAGTACCACCAGAAGT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000105007.3 |
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| CDS-3UTR TCA 90 bp | ACTTCTGGTGGTACTAGACTCCAAAGAATATTGAACTTGTTTTTGGTCTTCTTCGAACCATCACACCTCTaGCACCGTTGCCTTAAAATT | + |
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Preference number: 4 (lower is better) Translates to: TSGGTRLQRILNLFLVFFEPSHL*HRCLKI Trigger: AATTTTAAGGCAACGGTGTCAGAGGTGTGATGGTTC...GAAGAAGACCAAAAACAAGTTCAATATTCTTTGGAGTCTAGTACCACCAGAAGT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000105007.3 |
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| CDS-3UTR TCA 90 bp | CCTTGCAAATATAGTCTCTTCTTTCCATTCCAAGCTTGGATCTCGATGGTAAATTCCAGTAGATGTAGTTaGGAACTTGATGTGGATACA | + |
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Preference number: 4 (lower is better) Translates to: PCKYSLFFPFQAWISMVNSSRCS*ELDVDT Trigger: TGTATCCACATCAAGTTCTCAACTACATCTACTGGA...ATTTACCATCGAGATCCAAGCTTGGAATGGAAAGAAGAGACTATATTTGCAAGG 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105007.3 |
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| 3UTR CAA 72 bp | GGTGGTACTAGACTCCAAAGAATATTGAACTTGTTTTaGGTCTTCTTCACTGTAGTCATTACACAGCCTTCA | + |
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Preference number: 4 (lower is better) Translates to: GGTRLQRILNLF*VFFTVVITQPS Trigger: TGAAGGCTGTGTAATGACTACAGTGAAGAAGACCAAAAACAAGTTCAATATTCTTTGGAGTCTAGTACCACC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105007.3 |
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| 3UTR CAA 72 bp | GCAGTCACTTCTGGTGGTACTAGACTCCAAAGAATATaGAACTTGTTTTTGGTCTTCTTCACTGTAGTCATT | + |
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Preference number: 4 (lower is better) Translates to: AVTSGGTRLQRI*NLFLVFFTVVI Trigger: AATGACTACAGTGAAGAAGACCAAAAACAAGTTCAATATTCTTTGGAGTCTAGTACCACCAGAAGTGACTGC 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000105007.3 |
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| CDS-3UTR TCA 90 bp | GGTACTAGACTCCAAAGAATATTGAACTTGTTTTTGGTCTTCTTCACTGTAGTCTATAACACCATGGTGTaGTTCTCTCCAAGTACCTTT | + |
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Preference number: 4 (lower is better) Translates to: GTRLQRILNLFLVFFTVVYNTMV*FSPSTF Trigger: AAAGGTACTTGGAGAGAATCACACCATGGTGTTATA...GACTACAGTGAAGAAGACCAAAAACAAGTTCAATATTCTTTGGAGTCTAGTACC 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000105007.3 |
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| CDS-3UTR TCA 90 bp | TTTTACCTTGCAAATATAGTCTCTTCTTTCCATTCCAAGCTTGGATCTCGATGGTCACAGATGATGTGCTaGAATCTCAGCTTTTTAAAC | + |
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Preference number: 4 (lower is better) Translates to: FYLANIVSSFHSKLGSRWSQMMC*NLSFLN Trigger: GTTTAAAAAGCTGAGATTTCAGCACATCATCTGTGA...CCATCGAGATCCAAGCTTGGAATGGAAAGAAGAGACTATATTTGCAAGGTAAAA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000105007.3 |
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| CDS-3UTR TCA 90 bp | GGTACTAGACTCCAAAGAATATTGAACTTGTTTTTGGTCTTCTTCACTGTAGTCTTGTTTGTAAATGGGTaGCAACCATGCCATAGGTAT | + |
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Preference number: 4 (lower is better) Translates to: GTRLQRILNLFLVFFTVVLFVNG*QPCHRY Trigger: ATACCTATGGCATGGTTGTCACCCATTTACAAACAA...GACTACAGTGAAGAAGACCAAAAACAAGTTCAATATTCTTTGGAGTCTAGTACC 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000105007.3 |
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| CDS-3UTR TCA 90 bp | TTTTACCTTGCAAATATAGTCTCTTCTTTCCATTCCAAGCTTGGATCTCGATGGAACCTGTTGTCTTTCTaGAAGTTACTCTTTTGTTGG | + |
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Preference number: 4 (lower is better) Translates to: FYLANIVSSFHSKLGSRWNLLSF*KLLFCW Trigger: CCAACAAAAGAGTAACTTTCAGAAAGACAACAGGTT...CCATCGAGATCCAAGCTTGGAATGGAAAGAAGAGACTATATTTGCAAGGTAAAA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000105007.3 |
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| CDS GCA 90 bp | GTTATTGACAAATCCGCATCCCTGTACAAAGCACCAAACACAAAATaGAGAGATCGGGTATCAATATCCTCATTCTTAATGATCAGATTT | + |
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Preference number: 5 (lower is better) Translates to: VIDKSASLYKAPNTK*RDRVSISSFLMIRF Trigger: AAATCTGATCATTAAGAATGAGGATATTGATACCCGATCTCTGCATTTTGTGTTTGGTGCTTTGTACAGGGATGCGGATTTGTCAATAAC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105007.3 |
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| CDS GCA 90 bp | AGGAACATCCATATTTTTAGTGTGGTATATACATCAATCTCCTTTTaGATGACTAGTAAGTCAGAAGACAGTGCTAGAAGATACATCAAC | + |
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Preference number: 5 (lower is better) Translates to: RNIHIFSVVYTSISF*MTSKSEDSARRYIN Trigger: GTTGATGTATCTTCTAGCACTGTCTTCTGACTTACTAGTCATGCAAAAGGAGATTGATGTATATACCACACTAAAAATATGGATGTTCCT 36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000105007.3 |
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| CDS CCA 72 bp | GCTTGCGACTGCCAGGAATGTAGCTGGCACCGGCTATaGCTTCTGGCTGTGGCTCTAACAGACTGGAATCCC | + |
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Preference number: 6 (lower is better) Translates to: ACDCQECSWHRL*LLAVALTDWNP Trigger: GGGATTCCAGTCTGTTAGAGCCACAGCCAGAAGCCATAGCCGGTGCCAGCTACATTCCTGGCAGTCGCAAGC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105007.3 |
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| CDS GCA 72 bp | CCAACTCCTCCAAACTGTTTCTTTTTCGCTTGCGACTaGCAGGAATGTAGCTGGCACCGGCTATGGCTTCTG | + |
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Preference number: 6 (lower is better) Translates to: PTPPNCFFFACD*QECSWHRLWLL Trigger: CAGAAGCCATAGCCGGTGCCAGCTACATTCCTGGCAGTCGCAAGCGAAAAAGAAACAGTTTGGAGGAGTTGG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000105007.3 |
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| CDS CCA 72 bp | TGTTTCTTTTTCGCTTGCGACTGCCAGGAATGTAGCTaGCACCGGCTATGGCTTCTGGCTGTGGCTCTAACA | + |
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Preference number: 6 (lower is better) Translates to: CFFFACDCQECS*HRLWLLAVALT Trigger: TGTTAGAGCCACAGCCAGAAGCCATAGCCGGTGCCAGCTACATTCCTGGCAGTCGCAAGCGAAAAAGAAACA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000105007.3 |
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| CDS GCA 72 bp | TTGTTGCCAACTCCTCCAAACTGTTTCTTTTTCGCTTaGGACTGCCAGGAATGTAGCTGGCACCGGCTATGG | + |
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Preference number: 6 (lower is better) Translates to: LLPTPPNCFFFA*DCQECSWHRLW Trigger: CCATAGCCGGTGCCAGCTACATTCCTGGCAGTCGCAAGCGAAAAAGAAACAGTTTGGAGGAGTTGGCAACAA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000105007.3 |
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| CDS TCA 72 bp | TGCTGCCAAAACTTGAGGAACTTCCAGAGGTGTTATTaGCAAATCCGCATCCCTGTACAAAGCACCAAACAC | + |
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Preference number: 6 (lower is better) Translates to: CCQNLRNFQRCY*QIRIPVQSTKH Trigger: GTGTTTGGTGCTTTGTACAGGGATGCGGATTTGTCAATAACACCTCTGGAAGTTCCTCAAGTTTTGGCAGCA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105007.3 |
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| CDS CAA 72 bp | CGTCCAAATGACCACTTCCAAGTATATCTTCCATCCTaGGGGATCATTGTACCACACCTCATGGTGCATTCT | + |
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Preference number: 6 (lower is better) Translates to: RPNDHFQVYLPS*GIIVPHLMVHS Trigger: AGAATGCACCATGAGGTGTGGTACAATGATCCCCAAGGATGGAAGATATACTTGGAAGTGGTCATTTGGACG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105007.3 |
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| CDS CCA 72 bp | GTCCAAATGACCACTTCCAAGTATATCTTCCATCCTTaGGGATCATTGTACCACACCTCATGGTGCATTCTT | + |
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Preference number: 6 (lower is better) Translates to: VQMTTSKYIFHP*GSLYHTSWCIL Trigger: AAGAATGCACCATGAGGTGTGGTACAATGATCCCCAAGGATGGAAGATATACTTGGAAGTGGTCATTTGGAC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105007.3 |
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