Pregenerated sensors for BTBD35F5 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000118409Ensembl transcript IDs: ENSMUST00000178747.3
Found 12 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS GCA 90 bp | AGGAACATCCATATTTTTAGTGTGGTATATACATCAATCTCCTTTTaGATGACTAGTAAGTCAGAAGACAGTGCCAGAAGATACATCAAC | + |
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Preference number: 5 (lower is better) Translates to: RNIHIFSVVYTSISF*MTSKSEDSARRYIN Trigger: GTTGATGTATCTTCTGGCACTGTCTTCTGACTTACTAGTCATGCAAAAGGAGATTGATGTATATACCACACTAAAAATATGGATGTTCCT 37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000178747.3 |
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| CDS TCA 90 bp | ACATCCATATTTTTAGTGTGGTATATACATCAATCTCCTTTTGCATaGCTAGTAAGTCAGAAGACAGTGCCAGAAGATACATCAACTTCA | + |
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Preference number: 5 (lower is better) Translates to: TSIFLVWYIHQSPFA*LVSQKTVPEDTSTS Trigger: TGAAGTTGATGTATCTTCTGGCACTGTCTTCTGACTTACTAGTCATGCAAAAGGAGATTGATGTATATACCACACTAAAAATATGGATGT 36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000178747.3 |
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| CDS CCA 72 bp | GCTTGCGACTGCCAGGAATGTAGCTGGCTCCGGCTATaGCTTCTGGCTGTGGCTCTAACAGACTGGAATCCC | + |
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Preference number: 6 (lower is better) Translates to: ACDCQECSWLRL*LLAVALTDWNP Trigger: GGGATTCCAGTCTGTTAGAGCCACAGCCAGAAGCCATAGCCGGAGCCAGCTACATTCCTGGCAGTCGCAAGC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000178747.3 |
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| CDS CCA 72 bp | TGTTTCTTTTTCGCTTGCGACTGCCAGGAATGTAGCTaGCTCCGGCTATGGCTTCTGGCTGTGGCTCTAACA | + |
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Preference number: 6 (lower is better) Translates to: CFFFACDCQECS*LRLWLLAVALT Trigger: TGTTAGAGCCACAGCCAGAAGCCATAGCCGGAGCCAGCTACATTCCTGGCAGTCGCAAGCGAAAAAGAAACA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000178747.3 |
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| CDS CAA 72 bp | TATCAACATATGCCATGTGGGTGGAAAGCCAGTTGTTaGCGTGTTGTAAAAGCTGTTTCATGGTTCCGTTCC | + |
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Preference number: 6 (lower is better) Translates to: YQHMPCGWKASC*RVVKAVSWFRS Trigger: GGAACGGAACCATGAAACAGCTTTTACAACACGCAAACAACTGGCTTTCCACCCACATGGCATATGTTGATA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000178747.3 |
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| CDS CAA 72 bp | ATGTTATCAACATATGCCATGTGGGTGGAAAGCCAGTaGTTTGCGTGTTGTAAAAGCTGTTTCATGGTTCCG | + |
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Preference number: 6 (lower is better) Translates to: MLSTYAMWVESQ*FACCKSCFMVP Trigger: CGGAACCATGAAACAGCTTTTACAACACGCAAACAACTGGCTTTCCACCCACATGGCATATGTTGATAACAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000178747.3 |
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| CDS CAA 72 bp | ACCACTTCCAAGTATATCTTCCATCCTTGGGGATCATaGTACCACACCTCATGGTGCATTCTTCAAGTTCTT | + |
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Preference number: 6 (lower is better) Translates to: TTSKYIFHPWGS*YHTSWCILQVL Trigger: AAGAACTTGAAGAATGCACCATGAGGTGTGGTACAATGATCCCCAAGGATGGAAGATATACTTGGAAGTGGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000178747.3 |
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| CDS CAA 72 bp | GTAGTTGAGAACTTGATGTGGATACATTCCCTGGTTTaGAGGTCCATGAACATTAGAACTTGTTGCCAACTC | + |
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Preference number: 6 (lower is better) Translates to: VVENLMWIHSLV*RSMNIRTCCQL Trigger: GAGTTGGCAACAAGTTCTAATGTTCATGGACCTCAAAACCAGGGAATGTATCCACATCAAGTTCTCAACTAC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000178747.3 |
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| CDS CCA 72 bp | GGTGCATTCTTCAAGTTCTTGTTCATTGATAACTTGTaGTCCAATTACCCCATATTCTTGTGTTCGCAGCAA | + |
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Preference number: 6 (lower is better) Translates to: GAFFKFLFIDNL*SNYPIFLCSQQ Trigger: TTGCTGCGAACACAAGAATATGGGGTAATTGGACCACAAGTTATCAATGAACAAGAACTTGAAGAATGCACC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000178747.3 |
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| CDS CAA 72 bp | TTCATTGATAACTTGTGGTCCAATTACCCCATATTCTaGTGTTCGCAGCAAAGTCAACCACTGTTGTTTGTA | + |
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Preference number: 6 (lower is better) Translates to: FIDNLWSNYPIF*CSQQSQPLLFV Trigger: TACAAACAACAGTGGTTGACTTTGCTGCGAACACAAGAATATGGGGTAATTGGACCACAAGTTATCAATGAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000178747.3 |
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| CDS TCA 72 bp | TTTTTAGTGTGGTATATACATCAATCTCCTTTTGCATaGCTAGTAAGTCAGAAGACAGTGCCAGAAGATACA | + |
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Preference number: 6 (lower is better) Translates to: FLVWYIHQSPFA*LVSQKTVPEDT Trigger: TGTATCTTCTGGCACTGTCTTCTGACTTACTAGTCATGCAAAAGGAGATTGATGTATATACCACACTAAAAA 36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000178747.3 |
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| CDS GCA 72 bp | CATATTTTTAGTGTGGTATATACATCAATCTCCTTTTaGATGACTAGTAAGTCAGAAGACAGTGCCAGAAGA | + |
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Preference number: 6 (lower is better) Translates to: HIFSVVYTSISF*MTSKSEDSARR Trigger: TCTTCTGGCACTGTCTTCTGACTTACTAGTCATGCAAAAGGAGATTGATGTATATACCACACTAAAAATATG 36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000178747.3 |
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