Pregenerated sensors for BTBD35F28 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000094307Ensembl transcript IDs: ENSMUST00000105015.3
Found 5 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | TTTGTTGGAAGTAAAGGTTTTCTTCAGAAATACATGGAAATAAGGTaGTGGAGGGAAGCAATCACTTCTGGTGGTACTAGACTCCAAAGA | + |
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Preference number: 1 (lower is better) Translates to: FVGSKGFLQKYMEIR*WREAITSGGTRLQR Trigger: TCTTTGGAGTCTAGTACCACCAGAAGTGATTGCTTCCCTCCATCACCTTATTTCCATGTATTTCTGAAGAAAACCTTTACTTCCAACAAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105015.3 |
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| 3UTR CAA 90 bp | GAAGCAATCACTTCTGGTGGTACTAGACTCCAAAGAATATTGAATTaGTTTTGGGTCTTCCTCACTGTAGTCATTACACAGCCTTCATAT | + |
|
Preference number: 2 (lower is better) Translates to: EAITSGGTRLQRILN*FWVFLTVVITQPSY Trigger: ATATGAAGGCTGTGTAATGACTACAGTGAGGAAGACCCAAAACAAATTCAATATTCTTTGGAGTCTAGTACCACCAGAAGTGATTGCTTC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105015.3 |
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| 3UTR CAA 72 bp | ACTTCTGGTGGTACTAGACTCCAAAGAATATTGAATTaGTTTTGGGTCTTCCTCACTGTAGTCATTACACAG | + |
|
Preference number: 4 (lower is better) Translates to: TSGGTRLQRILN*FWVFLTVVITQ Trigger: CTGTGTAATGACTACAGTGAGGAAGACCCAAAACAAATTCAATATTCTTTGGAGTCTAGTACCACCAGAAGT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105015.3 |
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| 3UTR CAA 72 bp | GCAATCACTTCTGGTGGTACTAGACTCCAAAGAATATaGAATTTGTTTTGGGTCTTCCTCACTGTAGTCATT | + |
|
Preference number: 4 (lower is better) Translates to: AITSGGTRLQRI*NLFWVFLTVVI Trigger: AATGACTACAGTGAGGAAGACCCAAAACAAATTCAATATTCTTTGGAGTCTAGTACCACCAGAAGTGATTGC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105015.3 |
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| CDS GCA 90 bp | AATCTACTTTCTTGTAAAGTGCCACACTTGGATGTACCATCAAATTaGAAAGAAGCCATTCAAAGCATCTCGTCTTTACAGCTTTTAATC | + |
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Preference number: 5 (lower is better) Translates to: NLLSCKVPHLDVPSN*KEAIQSISSLQLLI Trigger: GATTAAAAGCTGTAAAGACGAGATGCTTTGAATGGCTTCTTTGCAATTTGATGGTACATCCAAGTGTGGCACTTTACAAGAAAGTAGATT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105015.3 |
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