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Pregenerated sensors for BTBD35F25 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000118431

Ensembl transcript IDs: ENSMUST00000238772.2

Found 12 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
CDS-3UTR CCA 90 bp GGTCTTCCTCACTGTAGTCATTACACAGCCTTCATATTAAATGAGCTATTCAATCATATGCCATGTGGGTaGAAAGCCAGTTGTTTGCAT +
Preference number: 4 (lower is better)
Translates to: GLPHCSHYTAFILNELFNHMPCG*KASCLH
Trigger: ATGCAAACAACTGGCTTTCCACCCACATGGCATATG...ATTGAATAGCTCATTTAATATGAAGGCTGTGTAATGACTACAGTGAGGAAGACC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000238772.2
CDS-3UTR GCA 90 bp GAAGCAGTCACTTCTGGTGGTACTAGACTCCAAAGAATATTGAATTTGTTTTTGTTAATGTCGCTGTCATaGCCGTCCAAAAATAAGTTT +
Preference number: 4 (lower is better)
Translates to: EAVTSGGTRLQRILNLFLLMSLS*PSKNKF
Trigger: AAACTTATTTTTGGACGGGCATGACAGCGACATTAA...CAAAAACAAATTCAATATTCTTTGGAGTCTAGTACCACCAGAAGTGACTGCTTC
37% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000238772.2
CDS-3UTR GCA 90 bp GTCACTTCTGGTGGTACTAGACTCCAAAGAATATTGAATTTGTTTTTGGTCTTCTACTTCTTTGTAAAGTaGCACACTTGGATGTACCAT +
Preference number: 4 (lower is better)
Translates to: VTSGGTRLQRILNLFLVFYFFVK*HTWMYH
Trigger: ATGGTACATCCAAGTGTGGCACTTTACAAAGAAGTA...GAAGACCAAAAACAAATTCAATATTCTTTGGAGTCTAGTACCACCAGAAGTGAC
37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000238772.2
CDS-3UTR CAA 90 bp TTTGGTCTTCCTCACTGTAGTCATTACACAGCCTTCATATTAAATGAGCTATTCTGGGTGGAAAGCCAGTaGTTTGCATGTTGTAAAAGC +
Preference number: 5 (lower is better)
Translates to: FGLPHCSHYTAFILNELFWVESQ*FACCKS
Trigger: GCTTTTACAACATGCAAACAACTGGCTTTCCACCCA...GAATAGCTCATTTAATATGAAGGCTGTGTAATGACTACAGTGAGGAAGACCAAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000238772.2
CDS CCA 90 bp CCTTCTTCACTTTCAAGAAAACTGATGTTATCAACATATGCCATGTaGGTGGAAAGCCAGTTGTTTGCATGTTGTAAAAGCTGTTTCATG +
Preference number: 5 (lower is better)
Translates to: PSSLSRKLMLSTYAM*VESQLFACCKSCFM
Trigger: CATGAAACAGCTTTTACAACATGCAAACAACTGGCTTTCCACCCACATGGCATATGTTGATAACATCAGTTTTCTTGAAAGTGAAGAAGG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000238772.2
CDS-3UTR CAA 90 bp GGTCTTCCTCACTGTAGTCATTACACAGCCTTCATATTAAATGAGCTATTCAATTGGAAAGCCAGTTGTTaGCATGTTGTAAAAGCTGTT +
Preference number: 5 (lower is better)
Translates to: GLPHCSHYTAFILNELFNWKASC*HVVKAV
Trigger: AACAGCTTTTACAACATGCAAACAACTGGCTTTCCA...ATTGAATAGCTCATTTAATATGAAGGCTGTGTAATGACTACAGTGAGGAAGACC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000238772.2
CDS GCA 90 bp AATCTACTTCTTTGTAAAGTGCCACACTTGGATGTACCATCAAATTaGAAAGAAGCCATTCAAAGCATCTCGTCTTTACAGCTTTTAATC +
Preference number: 5 (lower is better)
Translates to: NLLLCKVPHLDVPSN*KEAIQSISSLQLLI
Trigger: GATTAAAAGCTGTAAAGACGAGATGCTTTGAATGGCTTCTTTGCAATTTGATGGTACATCCAAGTGTGGCACTTTACAAAGAAGTAGATT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000238772.2
CDS CCA 72 bp TGTTTCGTTTTCGCTTGCGACTGCCAGGAATGTAGCTaGCTCCGGCTATGGCTTCTGGCTGTGGCTCTAACA +
Preference number: 6 (lower is better)
Translates to: CFVFACDCQECS*LRLWLLAVALT
Trigger: TGTTAGAGCCACAGCCAGAAGCCATAGCCGGAGCCAGCTACATTCCTGGCAGTCGCAAGCGAAAACGAAACA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000238772.2
CDS GCA 72 bp TCCCTGGTTTTGAAGTCCATGAACATTAGAACTTGTTaGCAACTCCTCCAAACTGTTTCGTTTTCGCTTGCG +
Preference number: 6 (lower is better)
Translates to: SLVLKSMNIRTC*QLLQTVSFSLA
Trigger: CGCAAGCGAAAACGAAACAGTTTGGAGGAGTTGGCAACAAGTTCTAATGTTCATGGACTTCAAAACCAGGGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000238772.2
CDS CAA 72 bp TATCAACATATGCCATGTGGGTGGAAAGCCAGTTGTTaGCATGTTGTAAAAGCTGTTTCATGGTTCCGTTCC +
Preference number: 6 (lower is better)
Translates to: YQHMPCGWKASC*HVVKAVSWFRS
Trigger: GGAACGGAACCATGAAACAGCTTTTACAACATGCAAACAACTGGCTTTCCACCCACATGGCATATGTTGATA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000238772.2
CDS CAA 72 bp ATGTTATCAACATATGCCATGTGGGTGGAAAGCCAGTaGTTTGCATGTTGTAAAAGCTGTTTCATGGTTCCG +
Preference number: 6 (lower is better)
Translates to: MLSTYAMWVESQ*FACCKSCFMVP
Trigger: CGGAACCATGAAACAGCTTTTACAACATGCAAACAACTGGCTTTCCACCCACATGGCATATGTTGATAACAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000238772.2
CDS CAA 90 bp AGAAAACTGATGTTATCAACATATGCCATGTGGGTGGAAAGCCAGTaGTTTGCATGTTGTAAAAGCTGTTTCATGGTTCCGTTCCAGCAT +
Preference number: 6 (lower is better)
Translates to: RKLMLSTYAMWVESQ*FACCKSCFMVPFQH
Trigger: ATGCTGGAACGGAACCATGAAACAGCTTTTACAACATGCAAACAACTGGCTTTCCACCCACATGGCATATGTTGATAACATCAGTTTTCT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000238772.2