Pregenerated sensors for BTBD35F24 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000096426

Ensembl transcript IDs: ENSMUST00000178080.3

Found 8 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS-3UTR GCA 90 bp	GGGAAGCAGTCACTTCTGGTGGTACTAGACTCCAAAGAATATTTAATTTGTTTTAGCTGGCTCCGGCTATaGCTTCTGGCTGTGGCTCTA	+
Preference number: 4 (lower is better) Translates to: GKQSLLVVLDSKEYLICFSWLRL*LLAVAL Trigger: TAGAGCCACAGCCAGAAGGCATAGCCGGAGCCAGCT...AAAACAAATTAAATATTCTTTGGAGTCTAGTACCACCAGAAGTGACTGCTTCCC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000178080.3
CDS-3UTR TCA 90 bp	GGGAAGCAGTCACTTCTGGTGGTACTAGACTCCAAAGAATATTTAATTTGTTTTAAGTCAAGTCATAGATaGTGTGCTGAAATCTCAGCT	+
Preference number: 4 (lower is better) Translates to: GKQSLLVVLDSKEYLICFKSSHR*CAEISA Trigger: AGCTGAGATTTCAGCACATCATCTATGACTTGACTT...AAAACAAATTAAATATTCTTTGGAGTCTAGTACCACCAGAAGTGACTGCTTCCC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000178080.3
CDS-3UTR TCA 90 bp	GGGAAGCAGTCACTTCTGGTGGTACTAGACTCCAAAGAATATTTAATTTGTTTTTATAACACCATGGTGTaGTTCTCTCCAAGTATCTTT	+
Preference number: 4 (lower is better) Translates to: GKQSLLVVLDSKEYLICFYNTMV*FSPSIF Trigger: AAAGATACTTGGAGAGAATCACACCATGGTGTTATA...AAAACAAATTAAATATTCTTTGGAGTCTAGTACCACCAGAAGTGACTGCTTCCC 37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000178080.3
CDS CCA 90 bp	CCTCCAAACTGTTTCTTTTTCGCTTGCGACTGCCAGGAATGTAGCTaGCTCCGGCTATGCCTTCTGGCTGTGGCTCTAACAGACTGGAAT	+
Preference number: 5 (lower is better) Translates to: PPNCFFFACDCQECS*LRLCLLAVALTDWN Trigger: ATTCCAGTCTGTTAGAGCCACAGCCAGAAGGCATAGCCGGAGCCAGCTACATTCCTGGCAGTCGCAAGCGAAAAAGAAACAGTTTGGAGG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000178080.3
CDS TCA 90 bp	ATGACATTTCGGATATGGTTGTGGCAAGCAGAACCATCACACCTCTaGCACCGTTGCCTTAAAATTACACACTGCCTGGTGAAGGTCACG	+
Preference number: 5 (lower is better) Translates to: MTFRIWLWQAEPSHL*HRCLKITHCLVKVT Trigger: CGTGACCTTCACCAGGCAGTGTGTAATTTTAAGGCAACGGTGTCAGAGGTGTGATGGTTCTGCTTGCCACAACCATATCCGAAATGTCAT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000178080.3
CDS GCA 72 bp	GCTTGCGACTGCCAGGAATGTAGCTGGCTCCGGCTATaGCTTCTGGCTGTGGCTCTAACAGACTGGAATCCC	+
Preference number: 6 (lower is better) Translates to: ACDCQECSWLRL*LLAVALTDWNP Trigger: GGGATTCCAGTCTGTTAGAGCCACAGCCAGAAGGCATAGCCGGAGCCAGCTACATTCCTGGCAGTCGCAAGC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000178080.3
CDS GCA 72 bp	CCAACTCCTCCAAACTGTTTCTTTTTCGCTTGCGACTaGCAGGAATGTAGCTGGCTCCGGCTATGCCTTCTG	+
Preference number: 6 (lower is better) Translates to: PTPPNCFFFACD*QECSWLRLCLL Trigger: CAGAAGGCATAGCCGGAGCCAGCTACATTCCTGGCAGTCGCAAGCGAAAAAGAAACAGTTTGGAGGAGTTGG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000178080.3
CDS GCA 72 bp	TTGTTGCCAACTCCTCCAAACTGTTTCTTTTTCGCTTaGGACTGCCAGGAATGTAGCTGGCTCCGGCTATGC	+
Preference number: 6 (lower is better) Translates to: LLPTPPNCFFFA*DCQECSWLRLC Trigger: GCATAGCCGGAGCCAGCTACATTCCTGGCAGTCGCAAGCGAAAAAGAAACAGTTTGGAGGAGTTGGCAACAA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000178080.3

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