Pregenerated sensors for BTBD35F23 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000100249

Ensembl transcript IDs: ENSMUST00000189190.2

Found 9 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS-3UTR CCA 90 bp	ACTTCTGGTGGTACTAGACTCCAAAGAATATTGAATTTGTTTTTGGTCTTCCTCTATATCTTCCATCTTTaGGGATCATTGTACCACACC	+
Preference number: 4 (lower is better) Translates to: TSGGTRLQRILNLFLVFLYIFHL*GSLYHT Trigger: GGTGTGGTACAATGATCCCCAAAGATGGAAGATATA...GAGGAAGACCAAAAACAAATTCAATATTCTTTGGAGTCTAGTACCACCAGAAGT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000189190.2
CDS-3UTR CCA 90 bp	ACTTCTGGTGGTACTAGACTCCAAAGAATATTGAATTTGTTTTTGGTCTTCCTCATTACAATTTGCTCCTaGTTATATTCAAAGGTGAGG	+
Preference number: 4 (lower is better) Translates to: TSGGTRLQRILNLFLVFLITICS*LYSKVR Trigger: CCTCACCTTTGAATATAACCAGGAGCAAATTGTAAT...GAGGAAGACCAAAAACAAATTCAATATTCTTTGGAGTCTAGTACCACCAGAAGT 36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000189190.2
CDS TCA 90 bp	ACAGTGTTCCTGTTGATAGTTTCTTTCATGATTCCTTCACACTTCTaGATTACTCGATCCACCCGAAGCAGGCATGCTGCTGCCAAAACT	+
Preference number: 5 (lower is better) Translates to: TVFLLIVSFMIPSHF*ITRSTRSRHAAAKT Trigger: AGTTTTGGCAGCAGCATGCCTGCTTCGGGTGGATCGAGTAATTCAGAAGTGTGAAGGAATCATGAAAGAAACTATCAACAGGAACACTGT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000189190.2
CDS GCA 90 bp	TGGATACATTCCCTGGTTTTGAGGTCCATGAACATTAGAACTTGTTaGCAACTCCTCCAAACTGTTTCTTTTTCGCTTGCGACTGACAGG	+
Preference number: 5 (lower is better) Translates to: WIHSLVLRSMNIRTC*QLLQTVSFSLATDR Trigger: CCTGTCAGTCGCAAGCGAAAAAGAAACAGTTTGGAGGAGTTGGCAACAAGTTCTAATGTTCATGGACCTCAAAACCAGGGAATGTATCCA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000189190.2
CDS-3UTR CAA 90 bp	ACTTCTGGTGGTACTAGACTCCAAAGAATATTGAATTTGTTTTTGGTCTTCCTCCATCTTTGGGGATCATaGTACCACACCTCATGGTGC	+
Preference number: 5 (lower is better) Translates to: TSGGTRLQRILNLFLVFLHLWGS*YHTSWC Trigger: GCACCATGAGGTGTGGTACAATGATCCCCAAAGATG...GAGGAAGACCAAAAACAAATTCAATATTCTTTGGAGTCTAGTACCACCAGAAGT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000189190.2
CDS TCA 72 bp	CCAACTCCTCCAAACTGTTTCTTTTTCGCTTGCGACTaGCAGGAATGTAGCTGGCTCCGGCTATGCCTTCTG	+
Preference number: 6 (lower is better) Translates to: PTPPNCFFFACD*QECSWLRLCLL Trigger: CAGAAGGCATAGCCGGAGCCAGCTACATTCCTGTCAGTCGCAAGCGAAAAAGAAACAGTTTGGAGGAGTTGG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000189190.2
CDS GCA 72 bp	ACACTTCTGAATTACTCGATCCACCCGAAGCAGGCATaGTGCTGCCAAAACTTGAGGAACTTCCAGAGGTGT	+
Preference number: 6 (lower is better) Translates to: TLLNYSIHPKQA*CCQNLRNFQRC Trigger: ACACCTCTGGAAGTTCCTCAAGTTTTGGCAGCAGCATGCCTGCTTCGGGTGGATCGAGTAATTCAGAAGTGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000189190.2
CDS TCA 72 bp	CTGTTGATAGTTTCTTTCATGATTCCTTCACACTTCTaGATTACTCGATCCACCCGAAGCAGGCATGCTGCT	+
Preference number: 6 (lower is better) Translates to: LLIVSFMIPSHF*ITRSTRSRHAA Trigger: AGCAGCATGCCTGCTTCGGGTGGATCGAGTAATTCAGAAGTGTGAAGGAATCATGAAAGAAACTATCAACAG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000189190.2
CDS CAA 72 bp	ACCACTTCCAAGTATATCTTCCATCTTTGGGGATCATaGTACCACACCTCATGGTGCATTCTTCAAGTTCTT	+
Preference number: 6 (lower is better) Translates to: TTSKYIFHLWGS*YHTSWCILQVL Trigger: AAGAACTTGAAGAATGCACCATGAGGTGTGGTACAATGATCCCCAAAGATGGAAGATATACTTGGAAGTGGT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000189190.2

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