Pregenerated sensors for BTBD35F22 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000118402

Ensembl transcript IDs: ENSMUST00000238528.2

Found 7 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
3UTR CAA 72 bp	ACTTCTGGTGGTACTAGACTCCAAAGAATATTGAATTaGTTTTTGGTCTTCCTCACTGTAGTCATTACACAG	+
Preference number: 4 (lower is better) Translates to: TSGGTRLQRILN*FLVFLTVVITQ Trigger: CTGTGTAATGACTACAGTGAGGAAGACCAAAAACAAATTCAATATTCTTTGGAGTCTAGTACCACCAGAAGT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000238528.2
CDS TCA 90 bp	ACAGTGTTCCTGTTGATAGTTTCTTTCATGATCCCTTCACACTGCTaGATTACTCGATCCACTCGAAGCAGGCATGCTGCTGCCAAAACT	+
Preference number: 5 (lower is better) Translates to: TVFLLIVSFMIPSHC*ITRSTRSRHAAAKT Trigger: AGTTTTGGCAGCAGCATGCCTGCTTCGAGTGGATCGAGTAATTCAGCAGTGTGAAGGGATCATGAAAGAAACTATCAACAGGAACACTGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000238528.2
CDS TCA 72 bp	CGATCCACTCGAAGCAGGCATGCTGCTGCCAAAACTTaGGGAACTTCCAGAGGTGTTATTGACAAATCCGCA	+
Preference number: 6 (lower is better) Translates to: RSTRSRHAAAKT*GTSRGVIDKSA Trigger: TGCGGATTTGTCAATAACACCTCTGGAAGTTCCTCAAGTTTTGGCAGCAGCATGCCTGCTTCGAGTGGATCG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000238528.2
CDS TCA 72 bp	CTGTTGATAGTTTCTTTCATGATCCCTTCACACTGCTaGATTACTCGATCCACTCGAAGCAGGCATGCTGCT	+
Preference number: 6 (lower is better) Translates to: LLIVSFMIPSHC*ITRSTRSRHAA Trigger: AGCAGCATGCCTGCTTCGAGTGGATCGAGTAATTCAGCAGTGTGAAGGGATCATGAAAGAAACTATCAACAG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000238528.2
CDS CAA 72 bp	TATCAATATATGCCATGTGGGTGGAAAGCCAGTTGTTaGCGTGTTGTAAAAGCTGTTTCATGGTTCCATTCC	+
Preference number: 6 (lower is better) Translates to: YQYMPCGWKASC*RVVKAVSWFHS Trigger: GGAATGGAACCATGAAACAGCTTTTACAACACGCAAACAACTGGCTTTCCACCCACATGGCATATATTGATA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000238528.2
CDS CAA 72 bp	ATGTTATCAATATATGCCATGTGGGTGGAAAGCCAGTaGTTTGCGTGTTGTAAAAGCTGTTTCATGGTTCCA	+
Preference number: 6 (lower is better) Translates to: MLSIYAMWVESQ*FACCKSCFMVP Trigger: TGGAACCATGAAACAGCTTTTACAACACGCAAACAACTGGCTTTCCACCCACATGGCATATATTGATAACAT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000238528.2
CDS TCA 72 bp	CTCATTCTTAATGATCAGATTTATAACACCATGGTGTaGTTCTCTCCAAGTACCTTTGAGAATGTTAGCAAA	+
Preference number: 6 (lower is better) Translates to: LILNDQIYNTMV*FSPSTFENVSK Trigger: TTTGCTAACATTCTCAAAGGTACTTGGAGAGAATCACACCATGGTGTTATAAATCTGATCATTAAGAATGAG 35% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000238528.2

---

If you would like us to post a table for your organism of interest, or have questions, please reach out to eerik at stanford dot edu or xjgao at stanford.edu