RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for BTBD35F21 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000099711

Ensembl transcript IDs: ENSMUST00000105017.5

Found 15 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CAA 90 bp TGGAGGGAAGCAGTCACTTCTGGTGGTACTAGACTCCAAAGAATATaGAATTTGTTTTTGGTCTTCCTCACTGTAGTCATTACACAGCCT +
Preference number: 2 (lower is better)
Translates to: WREAVTSGGTRLQRI*NLFLVFLTVVITQP
Trigger: AGGCTGTGTAATGACTACAGTGAGGAAGACCAAAAACAAATTCAATATTCTTTGGAGTCTAGTACCACCAGAAGTGACTGCTTCCCTCCA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000105017.5
3UTR CAA 90 bp GAAGCAGTCACTTCTGGTGGTACTAGACTCCAAAGAATATTGAATTaGTTTTTGGTCTTCCTCACTGTAGTCATTACACAGCCTTCATAT +
Preference number: 2 (lower is better)
Translates to: EAVTSGGTRLQRILN*FLVFLTVVITQPSY
Trigger: ATATGAAGGCTGTGTAATGACTACAGTGAGGAAGACCAAAAACAAATTCAATATTCTTTGGAGTCTAGTACCACCAGAAGTGACTGCTTC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000105017.5
CDS TCA 90 bp ACAGTGTTCCTGTTGATAGTTTCTTTCATGATTCCTTCACACTGCTaGATTACTCGATCCACTCGAAGCAGGCATGCTGCTGCCAAAACT +
Preference number: 5 (lower is better)
Translates to: TVFLLIVSFMIPSHC*ITRSTRSRHAAAKT
Trigger: AGTTTTGGCAGCAGCATGCCTGCTTCGAGTGGATCGAGTAATTCAGCAGTGTGAAGGAATCATGAAAGAAACTATCAACAGGAACACTGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000105017.5
CDS CCA 90 bp AGCCAAGTCGTCCAACTGACCACTTCCAAGTATATCTTCCATCTTTaGGGATCATTGTACCACACCTCATGGTGCATTCTTCAAGTTCTT +
Preference number: 5 (lower is better)
Translates to: SQVVQLTTSKYIFHL*GSLYHTSWCILQVL
Trigger: AAGAACTTGAAGAATGCACCATGAGGTGTGGTACAATGATCCCCAAAGATGGAAGATATACTTGGAAGTGGTCAGTTGGACGACTTGGCT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000105017.5
CDS GCA 90 bp GTTATTGACAAATCCGCATCCGTGTACAGAGCACCAAACACAAAATaGAGAGATCGGGTATCAATATCCTCATTCTTAATGATCAGATTT +
Preference number: 5 (lower is better)
Translates to: VIDKSASVYRAPNTK*RDRVSISSFLMIRF
Trigger: AAATCTGATCATTAAGAATGAGGATATTGATACCCGATCTCTGCATTTTGTGTTTGGTGCTCTGTACACGGATGCGGATTTGTCAATAAC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000105017.5
CDS CCA 90 bp CCTTCTTCACTTTCAAGAAAACTGATGTTATCAATATATGCCATGTaGGTGGAAAGCCAGTTGTTTGCGTGTTGTAAAAGCTGTTTCATG +
Preference number: 5 (lower is better)
Translates to: PSSLSRKLMLSIYAM*VESQLFACCKSCFM
Trigger: CATGAAACAGCTTTTACAACACGCAAACAACTGGCTTTCCACCCACATGGCATATATTGATAACATCAGTTTTCTTGAAAGTGAAGAAGG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000105017.5
CDS GCA 90 bp TATCTACTTCCTTGTAAAGTGCCACACTTGGATGTACCATCAAATTaGAAAGAAGCCATTCAAAGCATCTCGTCTTTACAGCTTTTAATC +
Preference number: 5 (lower is better)
Translates to: YLLPCKVPHLDVPSN*KEAIQSISSLQLLI
Trigger: GATTAAAAGCTGTAAAGACGAGATGCTTTGAATGGCTTCTTTGCAATTTGATGGTACATCCAAGTGTGGCACTTTACAAGGAAGTAGATA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000105017.5
CDS GCA 72 bp ACACTGCTGAATTACTCGATCCACTCGAAGCAGGCATaGTGCTGCCAAAACTTGAGGAACTTCCAGAGGTGT +
Preference number: 6 (lower is better)
Translates to: TLLNYSIHSKQA*CCQNLRNFQRC
Trigger: ACACCTCTGGAAGTTCCTCAAGTTTTGGCAGCAGCATGCCTGCTTCGAGTGGATCGAGTAATTCAGCAGTGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000105017.5
CDS TCA 72 bp TGCTGCCAAAACTTGAGGAACTTCCAGAGGTGTTATTaGCAAATCCGCATCCGTGTACAGAGCACCAAACAC +
Preference number: 6 (lower is better)
Translates to: CCQNLRNFQRCY*QIRIRVQSTKH
Trigger: GTGTTTGGTGCTCTGTACACGGATGCGGATTTGTCAATAACACCTCTGGAAGTTCCTCAAGTTTTGGCAGCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000105017.5
CDS CAA 72 bp TATCAATATATGCCATGTGGGTGGAAAGCCAGTTGTTaGCGTGTTGTAAAAGCTGTTTCATGGTTCCGTTCC +
Preference number: 6 (lower is better)
Translates to: YQYMPCGWKASC*RVVKAVSWFRS
Trigger: GGAACGGAACCATGAAACAGCTTTTACAACACGCAAACAACTGGCTTTCCACCCACATGGCATATATTGATA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000105017.5
CDS GCA 72 bp AAATCCGCATCCGTGTACAGAGCACCAAACACAAAATaGAGAGATCGGGTATCAATATCCTCATTCTTAATG +
Preference number: 6 (lower is better)
Translates to: KSASVYRAPNTK*RDRVSISSFLM
Trigger: CATTAAGAATGAGGATATTGATACCCGATCTCTGCATTTTGTGTTTGGTGCTCTGTACACGGATGCGGATTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000105017.5
CDS CAA 72 bp ATGTTATCAATATATGCCATGTGGGTGGAAAGCCAGTaGTTTGCGTGTTGTAAAAGCTGTTTCATGGTTCCG +
Preference number: 6 (lower is better)
Translates to: MLSIYAMWVESQ*FACCKSCFMVP
Trigger: CGGAACCATGAAACAGCTTTTACAACACGCAAACAACTGGCTTTCCACCCACATGGCATATATTGATAACAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000105017.5
CDS GCA 72 bp TTCTTCACTTTCAAGAAAACTGATGTTATCAATATATaGCATGTGGGTGGAAAGCCAGTTGTTTGCGTGTTG +
Preference number: 6 (lower is better)
Translates to: FFTFKKTDVINI*HVGGKPVVCVL
Trigger: CAACACGCAAACAACTGGCTTTCCACCCACATGGCATATATTGATAACATCAGTTTTCTTGAAAGTGAAGAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000105017.5
CDS CCA 72 bp CAACTTCATATCTACTTCCTTGTAAAGTGCCACACTTaGATGTACCATCAAATTGCAAAGAAGCCATTCAAA +
Preference number: 6 (lower is better)
Translates to: QLHIYFLVKCHT*MYHQIAKKPFK
Trigger: TTTGAATGGCTTCTTTGCAATTTGATGGTACATCCAAGTGTGGCACTTTACAAGGAAGTAGATATGAAGTTG
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000105017.5
CDS GCA 72 bp AAGATACATCAACTTCATATCTACTTCCTTGTAAAGTaGCACACTTGGATGTACCATCAAATTGCAAAGAAG +
Preference number: 6 (lower is better)
Translates to: KIHQLHIYFLVK*HTWMYHQIAKK
Trigger: CTTCTTTGCAATTTGATGGTACATCCAAGTGTGGCACTTTACAAGGAAGTAGATATGAAGTTGATGTATCTT
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000105017.5