Pregenerated sensors for BTBD35F17 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000094273

Ensembl transcript IDs: ENSMUST00000105014.2

Found 5 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
3UTR TCA 90 bp	TTTGTTGGAAGTAAAGGTTTTCTTCAGAAATACATGGAAATAAGGTaGTGGAGGGAAGCAGTCACTTCTGTTGGTACTAGACTCCAAAGA	+
Preference number: 1 (lower is better) Translates to: FVGSKGFLQKYMEIR*WREAVTSVGTRLQR Trigger: TCTTTGGAGTCTAGTACCAACAGAAGTGACTGCTTCCCTCCATCACCTTATTTCCATGTATTTCTGAAGAAAACCTTTACTTCCAACAAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105014.2
3UTR CAA 90 bp	GAAGCAGTCACTTCTGTTGGTACTAGACTCCAAAGAATATTGAATTaGTTTTTGGTCTTCTTCACTGTAGTCATTACACAGCCTTCATAT	+
Preference number: 2 (lower is better) Translates to: EAVTSVGTRLQRILN*FLVFFTVVITQPSY Trigger: ATATGAAGGCTGTGTAATGACTACAGTGAAGAAGACCAAAAACAAATTCAATATTCTTTGGAGTCTAGTACCAACAGAAGTGACTGCTTC 37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000105014.2
CDS CCA 90 bp	CCTTCTTCACTTTCAAGAAAACTGATGTTATCAACATATGCCATGTaGGTGGAAAGCCAGGTGTTTGCATGTTGTAAAAGCTGTTTCATG	+
Preference number: 5 (lower is better) Translates to: PSSLSRKLMLSTYAM*VESQVFACCKSCFM Trigger: CATGAAACAGCTTTTACAACATGCAAACACCTGGCTTTCCACCCACATGGCATATGTTGATAACATCAGTTTTCTTGAAAGTGAAGAAGG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000105014.2
CDS CAA 72 bp	TATCAACATATGCCATGTGGGTGGAAAGCCAGGTGTTaGCATGTTGTAAAAGCTGTTTCATGGTTCCGTTCC	+
Preference number: 6 (lower is better) Translates to: YQHMPCGWKARC*HVVKAVSWFRS Trigger: GGAACGGAACCATGAAACAGCTTTTACAACATGCAAACACCTGGCTTTCCACCCACATGGCATATGTTGATA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105014.2
CDS CAA 90 bp	ATCATTGTACCACACCTCATGGTGCATTCTTCAAGTTCTTGTTCATaGATAACTTGTGGTCCAATTACCCCATATTCTTGTGTTCGCAGC	+
Preference number: 6 (lower is better) Translates to: IIVPHLMVHSSSSCS*ITCGPITPYSCVRS Trigger: GCTGCGAACACAAGAATATGGGGTAATTGGACCACAAGTTATCAATGAACAAGAACTTGAAGAATGCACCATGAGGTGTGGTACAATGAT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105014.2

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