Pregenerated sensors for BTBD35F12 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000101500Ensembl transcript IDs: ENSMUST00000178827.3
Found 6 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS TCA 90 bp | ACAGTGTTCCTGTTGATAGTTTCTTTCATGATTCCTTCACACTGCTaGATTACTCGATCCACCCGAAGCAGGCATGCTGCTGCCAAACCT | + |
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Preference number: 5 (lower is better) Translates to: TVFLLIVSFMIPSHC*ITRSTRSRHAAAKP Trigger: AGGTTTGGCAGCAGCATGCCTGCTTCGGGTGGATCGAGTAATTCAGCAGTGTGAAGGAATCATGAAAGAAACTATCAACAGGAACACTGT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000178827.3 |
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| CDS GCA 90 bp | GTTATTGACAAATCCGAATCCGTGTACAAAGCACCAAACACAAAATaGAGAGATCGGGTATCAATATCCTCATTCTTAATGATCAGATTT | + |
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Preference number: 5 (lower is better) Translates to: VIDKSESVYKAPNTK*RDRVSISSFLMIRF Trigger: AAATCTGATCATTAAGAATGAGGATATTGATACCCGATCTCTGCATTTTGTGTTTGGTGCTTTGTACACGGATTCGGATTTGTCAATAAC 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000178827.3 |
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| CDS CAA 72 bp | CTGCTGCCAAACCTTGAGGAACTTCCAGAGGTGTTATaGACAAATCCGAATCCGTGTACAAAGCACCAAACA | + |
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Preference number: 6 (lower is better) Translates to: LLPNLEELPEVL*TNPNPCTKHQT Trigger: TGTTTGGTGCTTTGTACACGGATTCGGATTTGTCAATAACACCTCTGGAAGTTCCTCAAGGTTTGGCAGCAG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000178827.3 |
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| CDS GCA 72 bp | AAATCCGAATCCGTGTACAAAGCACCAAACACAAAATaGAGAGATCGGGTATCAATATCCTCATTCTTAATG | + |
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Preference number: 6 (lower is better) Translates to: KSESVYKAPNTK*RDRVSISSFLM Trigger: CATTAAGAATGAGGATATTGATACCCGATCTCTGCATTTTGTGTTTGGTGCTTTGTACACGGATTCGGATTT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000178827.3 |
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| CDS TCA 72 bp | TTTTTAGTGTGGTATATACATCAATCTCCTTTTGCATaGCTAGTAAGTCAGAAGACAGTGCTAGAACATACA | + |
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Preference number: 6 (lower is better) Translates to: FLVWYIHQSPFA*LVSQKTVLEHT Trigger: TGTATGTTCTAGCACTGTCTTCTGACTTACTAGTCATGCAAAAGGAGATTGATGTATATACCACACTAAAAA 35% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000178827.3 |
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| CDS GCA 72 bp | CATATTTTTAGTGTGGTATATACATCAATCTCCTTTTaGATGACTAGTAAGTCAGAAGACAGTGCTAGAACA | + |
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Preference number: 6 (lower is better) Translates to: HIFSVVYTSISF*MTSKSEDSART Trigger: TGTTCTAGCACTGTCTTCTGACTTACTAGTCATGCAAAAGGAGATTGATGTATATACCACACTAAAAATATG 35% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000178827.3 |
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