RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for BTBD2 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000003344

Ensembl transcript IDs: ENSMUST00000003434.14, ENSMUST00000126980.8, ENSMUST00000131876.2

Found 165 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp AGGAACCACGGCCACATGTCACCTACCCTGGGGCAGAGCTCCCAGTaGCTCTGTGTACATGCCCAGCAGGCCAGGGCTTCAGGGGGCAGC +
Preference number: 1 (lower is better)
Translates to: RNHGHMSPTLGQSSQ*LCVHAQQARASGGS
Trigger: GCTGCCCCCTGAAGCCCTGGCCTGCTGGGCATGTACACAGAGCCACTGGGAGCTCTGCCCCAGGGTAGGTGACATGTGGCCGTGGTTCCT
66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000003434.14
ENSMUST00000126980.8
3UTR CCA 90 bp GGTGGCCTAGAGGGCCAGGGCTGTGGTATGTACAGGGGTGTTCTGTaGTACCCCCGGAGAGCCACATCAGGCCAGCTGGGTGCCCAGTGC +
Preference number: 1 (lower is better)
Translates to: GGLEGQGCGMYRGVL*YPRRATSGQLGAQC
Trigger: GCACTGGGCACCCAGCTGGCCTGATGTGGCTCTCCGGGGGTACCACAGAACACCCCTGTACATACCACAGCCCTGGCCCTCTAGGCCACC
66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000003434.14
ENSMUST00000126980.8
3UTR CCA 90 bp TCTCAACGGGGCCCAGCCCATGGCCTAACCACCTCCTCAGTGCCTTaGGACAGGCGGTCACACTTGTCACTGTGGACACAGGCAGCCCCT +
Preference number: 1 (lower is better)
Translates to: SQRGPAHGLTTSSVP*DRRSHLSLWTQAAP
Trigger: AGGGGCTGCCTGTGTCCACAGTGACAAGTGTGACCGCCTGTCCCAAGGCACTGAGGAGGTGGTTAGGCCATGGGCTGGGCCCCGTTGAGA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000003434.14
ENSMUST00000126980.8
3UTR TCA 90 bp CGGGCTCCAGCTGAGTGTGGGCTTGTATGCATTGCAGTGTGCAGTTaGAGAGAACGGAGGAGCAGGGCAGCACCAGGGCTCGGAGCTGGC +
Preference number: 1 (lower is better)
Translates to: RAPAECGLVCIAVCS*RERRSRAAPGLGAG
Trigger: GCCAGCTCCGAGCCCTGGTGCTGCCCTGCTCCTCCGTTCTCTTCAACTGCACACTGCAATGCATACAAGCCCACACTCAGCTGGAGCCCG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000003434.14
ENSMUST00000126980.8
3UTR GCA 90 bp GGGTGTTCTGTGGTACCCCCGGAGAGCCACATCAGGCCAGCTGGGTaGCCAGTGCATTTTGATGGGTCTGCAGGCTCAAGGCTGAGCTCT +
Preference number: 1 (lower is better)
Translates to: GCSVVPPESHIRPAG*PVHFDGSAGSRLSS
Trigger: AGAGCTCAGCCTTGAGCCTGCAGACCCATCAAAATGCACTGGGCACCCAGCTGGCCTGATGTGGCTCTCCGGGGGTACCACAGAACACCC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000003434.14
ENSMUST00000126980.8
3UTR TCA 90 bp CAGCTGGGTGCCCAGTGCATTTTGATGGGTCTGCAGGCTCAAGGCTaGGCTCTGCTGAGCACACCTGTGAGGAGTCTGTCCGCCTTGGGT +
Preference number: 1 (lower is better)
Translates to: QLGAQCILMGLQAQG*ALLSTPVRSLSALG
Trigger: ACCCAAGGCGGACAGACTCCTCACAGGTGTGCTCAGCAGAGCTCAGCCTTGAGCCTGCAGACCCATCAAAATGCACTGGGCACCCAGCTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000003434.14
ENSMUST00000126980.8
3UTR CCA 90 bp AAACTGGAGACTGCGCCTTCTGGGACATCACTGGATGGGGTGATGTaGTGGCCTAGAGGGCCAGGGCTGTGGTATGTACAGGGGTGTTCT +
Preference number: 1 (lower is better)
Translates to: KLETAPSGTSLDGVM*WPRGPGLWYVQGCS
Trigger: AGAACACCCCTGTACATACCACAGCCCTGGCCCTCTAGGCCACCACATCACCCCATCCAGTGATGTCCCAGAAGGCGCAGTCTCCAGTTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000003434.14
ENSMUST00000126980.8
3UTR CCA 90 bp GCACACCTCCCATGGCTTTGGGATGGGTTCTGGGCAGGAGGTCACTaGTACAGAAATATGAGGAAGTGGAACCCCAAACTGGAGACTGCG +
Preference number: 1 (lower is better)
Translates to: AHLPWLWDGFWAGGH*YRNMRKWNPKLETA
Trigger: CGCAGTCTCCAGTTTGGGGTTCCACTTCCTCATATTTCTGTACCAGTGACCTCCTGCCCAGAACCCATCCCAAAGCCATGGGAGGTGTGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000003434.14
ENSMUST00000126980.8
3UTR TCA 90 bp GGCTTTGGGATGGGTTCTGGGCAGGAGGTCACTGGTACAGAAATATaGGGAAGTGGAACCCCAAACTGGAGACTGCGCCTTCTGGGACAT +
Preference number: 1 (lower is better)
Translates to: GFGMGSGQEVTGTEI*GSGTPNWRLRLLGH
Trigger: ATGTCCCAGAAGGCGCAGTCTCCAGTTTGGGGTTCCACTTCCTCATATTTCTGTACCAGTGACCTCCTGCCCAGAACCCATCCCAAAGCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000003434.14
ENSMUST00000126980.8
3UTR-3UTR CCA 90 bp CCAGGGCTTCAGGGGGCAGCAGTGCACGCAGGTCAGGACCTGGGACCTCCCAGGACCAGGGCTCGGAGCTaGCCTGCTGCCCTGAGCTTC +
Preference number: 2 (lower is better)
Translates to: PGLQGAAVHAGQDLGPPRTRARS*PAALSF
Trigger: GAAGCTCAGGGCAGCAGGCCAGCTCCGAGCCCTGGT...CCTGGGAGGTCCCAGGTCCTGACCTGCGTGCACTGCTGCCCCCTGAAGCCCTGG
69% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000003434.14
ENSMUST00000126980.8
3UTR-3UTR TCA 90 bp AGCTCCCAGTGGCTCTGTGTACATGCCCAGCAGGCCAGGGCTTCAGGGGGCAGCGCTGGCCTGCTGCCCTaGGCTTCAGGGACTGCGACC +
Preference number: 2 (lower is better)
Translates to: SSQWLCVHAQQARASGGSAGLLP*ASGTAT
Trigger: GGTCGCAGTCCCTGAAGCTCAGGGCAGCAGGCCAGC...GCTGCCCCCTGAAGCCCTGGCCTGCTGGGCATGTACACAGAGCCACTGGGAGCT
68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000003434.14
ENSMUST00000126980.8
3UTR-3UTR TCA 90 bp GTGGCTCTGTGTACATGCCCAGCAGGCCAGGGCTTCAGGGGGCAGCAGTGCACGGCTGGCCTGCTGCCCTaGGCTTCAGGGACTGCGACC +
Preference number: 2 (lower is better)
Translates to: VALCTCPAGQGFRGQQCTAGLLP*ASGTAT
Trigger: GGTCGCAGTCCCTGAAGCTCAGGGCAGCAGGCCAGC...CGTGCACTGCTGCCCCCTGAAGCCCTGGCCTGCTGGGCATGTACACAGAGCCAC
68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000003434.14
ENSMUST00000126980.8
3UTR-3UTR CCA 90 bp GGGCCAGGGCTGTGGTATGTACAGGGGTGTTCTGTGGTACCCCCGGAGAGCCACACCAGGGCTCGGAGCTaGCCTGCTGCCCTGAGCTTC +
Preference number: 2 (lower is better)
Translates to: GPGLWYVQGCSVVPPESHTRARS*PAALSF
Trigger: GAAGCTCAGGGCAGCAGGCCAGCTCCGAGCCCTGGT...GTGGCTCTCCGGGGGTACCACAGAACACCCCTGTACATACCACAGCCCTGGCCC
66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000003434.14
ENSMUST00000126980.8
3UTR-3UTR CCA 90 bp GTCACCTACCCTGGGGCAGAGCTCCCAGTGGCTCTGTGTACATGCCCAGCAGGCACGCAGGTCAGGACCTaGGACCTCCCAGGGAGCAGC +
Preference number: 2 (lower is better)
Translates to: VTYPGAELPVALCTCPAGTQVRT*DLPGSS
Trigger: GCTGCTCCCTGGGAGGTCCCAGGTCCTGACCTGCGT...GCCTGCTGGGCATGTACACAGAGCCACTGGGAGCTCTGCCCCAGGGTAGGTGAC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000003434.14
ENSMUST00000126980.8
3UTR CAA 90 bp GTCTCAACGGGGCCCAGCCCATGGCCTAACCACCTCCTCAGTGCCTaGGGACAGGCGGTCACACTTGTCACTGTGGACACAGGCAGCCCC +
Preference number: 2 (lower is better)
Translates to: VSTGPSPWPNHLLSA*GQAVTLVTVDTGSP
Trigger: GGGGCTGCCTGTGTCCACAGTGACAAGTGTGACCGCCTGTCCCAAGGCACTGAGGAGGTGGTTAGGCCATGGGCTGGGCCCCGTTGAGAC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000003434.14
ENSMUST00000126980.8
3UTR-3UTR GCA 90 bp GAGGGCCAGGGCTGTGGTATGTACAGGGGTGTTCTGTGGTACCCCCGGAGAGCCTCGGAGCTGGCCTGCTaGCCTGAGCTTCAGGGACTG +
Preference number: 2 (lower is better)
Translates to: EGQGCGMYRGVLWYPRRASELAC*PELQGL
Trigger: CAGTCCCTGAAGCTCAGGGCAGCAGGCCAGCTCCGA...GGCTCTCCGGGGGTACCACAGAACACCCCTGTACATACCACAGCCCTGGCCCTC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000003434.14
ENSMUST00000126980.8
3UTR CAA 90 bp GGAGAGGCCCGGCGCGGGCTCCAGCTGAGTGTGGGCTTGTATGCATaGCAGTGTGCAGTTGAAGAGAACGGAGGAGCAGGGCAGCACCAG +
Preference number: 2 (lower is better)
Translates to: GEARRGLQLSVGLYA*QCAVEENGGAGQHQ
Trigger: CTGGTGCTGCCCTGCTCCTCCGTTCTCTTCAACTGCACACTGCAATGCATACAAGCCCACACTCAGCTGGAGCCCGCGCCGGGCCTCTCC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000003434.14
ENSMUST00000126980.8
3UTR-3UTR CCA 90 bp GCCCTGAGCTTCAGGGACTGCGACCCACCACGCTCTGTCCATCCAAGGCTAGTCACGGGGCCCAGCCCATaGCCTAACCACCTCCTCAGT +
Preference number: 2 (lower is better)
Translates to: ALSFRDCDPPRSVHPRLVTGPSP*PNHLLS
Trigger: ACTGAGGAGGTGGTTAGGCCATGGGCTGGGCCCCGT...GACTAGCCTTGGATGGACAGAGCGTGGTGGGTCGCAGTCCCTGAAGCTCAGGGC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000003434.14
ENSMUST00000126980.8
3UTR-3UTR CCA 90 bp TATGTACAGGGGTGTTCTGTGGTACCCCCGGAGAGCCACATCAGGCCAGCTGGGACGCAGGTCAGGACCTaGGACCTCCCAGGGAGCAGC +
Preference number: 2 (lower is better)
Translates to: YVQGCSVVPPESHIRPAGTQVRT*DLPGSS
Trigger: GCTGCTCCCTGGGAGGTCCCAGGTCCTGACCTGCGT...CCCAGCTGGCCTGATGTGGCTCTCCGGGGGTACCACAGAACACCCCTGTACATA
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000003434.14
ENSMUST00000126980.8
3UTR-3UTR CCA 90 bp GAGGGCCAGGGCTGTGGTATGTACAGGGGTGTTCTGTGGTACCCCCGGAGAGCCACATGTCACCTACCCTaGGGCAGAGCTCCCAGTGGC +
Preference number: 2 (lower is better)
Translates to: EGQGCGMYRGVLWYPRRATCHLP*GRAPSG
Trigger: GCCACTGGGAGCTCTGCCCCAGGGTAGGTGACATGT...GGCTCTCCGGGGGTACCACAGAACACCCCTGTACATACCACAGCCCTGGCCCTC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000003434.14
ENSMUST00000126980.8
3UTR-3UTR GCA 90 bp GGCTCAAGGCTGAGCTCTGCTGAGCACACCTGTGAGGAGTCTGTCCGCCTTGGGCTGAGCTTCAGGGACTaGGACCCACCACGCTCTGTC +
Preference number: 2 (lower is better)
Translates to: GSRLSSAEHTCEESVRLGLSFRD*DPPRSV
Trigger: GACAGAGCGTGGTGGGTCGCAGTCCCTGAAGCTCAG...CCCAAGGCGGACAGACTCCTCACAGGTGTGCTCAGCAGAGCTCAGCCTTGAGCC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000003434.14
ENSMUST00000126980.8
3UTR-3UTR GCA 90 bp ACATGTCACCTACCCTGGGGCAGAGCTCCCAGTGGCTCTGTGTACATGCCCAGCTCGGAGCTGGCCTGCTaGCCTGAGCTTCAGGGACTG +
Preference number: 2 (lower is better)
Translates to: TCHLPWGRAPSGSVYMPSSELAC*PELQGL
Trigger: CAGTCCCTGAAGCTCAGGGCAGCAGGCCAGCTCCGA...GCTGGGCATGTACACAGAGCCACTGGGAGCTCTGCCCCAGGGTAGGTGACATGT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000003434.14
ENSMUST00000126980.8
3UTR-3UTR CCA 90 bp ACATGTCACCTACCCTGGGGCAGAGCTCCCAGTGGCTCTGTGTACATGCCCAGCACGGGGCCCAGCCCATaGCCTAACCACCTCCTCAGT +
Preference number: 2 (lower is better)
Translates to: TCHLPWGRAPSGSVYMPSTGPSP*PNHLLS
Trigger: ACTGAGGAGGTGGTTAGGCCATGGGCTGGGCCCCGT...GCTGGGCATGTACACAGAGCCACTGGGAGCTCTGCCCCAGGGTAGGTGACATGT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000003434.14
ENSMUST00000126980.8
3UTR-3UTR CCA 90 bp GGGCCAGGGCTGTGGTATGTACAGGGGTGTTCTGTGGTACCCCCGGAGAGCCACTCACACTTGTCACTGTaGACACAGGCAGCCCCTTCC +
Preference number: 2 (lower is better)
Translates to: GPGLWYVQGCSVVPPESHSHLSL*TQAAPS
Trigger: GGAAGGGGCTGCCTGTGTCCACAGTGACAAGTGTGA...GTGGCTCTCCGGGGGTACCACAGAACACCCCTGTACATACCACAGCCCTGGCCC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000003434.14
ENSMUST00000126980.8
3UTR-3UTR CCA 90 bp TCAAGGCTGAGCTCTGCTGAGCACACCTGTGAGGAGTCTGTCCGCCTTGGGTGGGGGCAGAGCTCCCAGTaGCTCTGTGTACATGCCCAG +
Preference number: 2 (lower is better)
Translates to: SRLSSAEHTCEESVRLGWGQSSQ*LCVHAQ
Trigger: CTGGGCATGTACACAGAGCCACTGGGAGCTCTGCCC...CCACCCAAGGCGGACAGACTCCTCACAGGTGTGCTCAGCAGAGCTCAGCCTTGA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000003434.14
ENSMUST00000126980.8
3UTR-3UTR CCA 90 bp TCAAGGCTGAGCTCTGCTGAGCACACCTGTGAGGAGTCTGTCCGCCTTGGGTGGACATGTCACCTACCCTaGGGCAGAGCTCCCAGTGGC +
Preference number: 2 (lower is better)
Translates to: SRLSSAEHTCEESVRLGWTCHLP*GRAPSG
Trigger: GCCACTGGGAGCTCTGCCCCAGGGTAGGTGACATGT...CCACCCAAGGCGGACAGACTCCTCACAGGTGTGCTCAGCAGAGCTCAGCCTTGA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000003434.14
ENSMUST00000126980.8
3UTR-3UTR TCA 90 bp GGGCCAGGGCTGTGGTATGTACAGGGGTGTTCTGTGGTACCCCCGGAGAGCCACATTGCAGTGTGCAGTTaGAGAGAACGGAGGAGCAGG +
Preference number: 2 (lower is better)
Translates to: GPGLWYVQGCSVVPPESHIAVCS*RERRSR
Trigger: CCTGCTCCTCCGTTCTCTTCAACTGCACACTGCAAT...GTGGCTCTCCGGGGGTACCACAGAACACCCCTGTACATACCACAGCCCTGGCCC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000003434.14
ENSMUST00000126980.8
3UTR CAA 90 bp CATGGCCTAACCACCTCCTCAGTGCCTTGGGACAGGCGGTCACACTaGTCACTGTGGACACAGGCAGCCCCTTCCATGATGATGTGGGAG +
Preference number: 2 (lower is better)
Translates to: HGLTTSSVPWDRRSH*SLWTQAAPSMMMWE
Trigger: CTCCCACATCATCATGGAAGGGGCTGCCTGTGTCCACAGTGACAAGTGTGACCGCCTGTCCCAAGGCACTGAGGAGGTGGTTAGGCCATG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000003434.14
ENSMUST00000126980.8
3UTR-3UTR TCA 90 bp GTGGCTCTGTGTACATGCCCAGCAGGCCAGGGCTTCAGGGGGCAGCAGTGCACGAGAAGAAAAGGAACATaGAACCCAGACCACTGGCTG +
Preference number: 2 (lower is better)
Translates to: VALCTCPAGQGFRGQQCTRRKGT*NPDHWL
Trigger: CAGCCAGTGGTCTGGGTTTCATGTTCCTTTTCTTCT...CGTGCACTGCTGCCCCCTGAAGCCCTGGCCTGCTGGGCATGTACACAGAGCCAC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000003434.14
ENSMUST00000126980.8
3UTR-3UTR GCA 90 bp AGCGGAGAAGAAAAGGAACATGAAACCCAGACCACTGGCTGGAGGAGAGGCCCGCTGAGCTTCAGGGACTaGGACCCACCACGCTCTGTC +
Preference number: 2 (lower is better)
Translates to: SGEEKEHETQTTGWRRGPLSFRD*DPPRSV
Trigger: GACAGAGCGTGGTGGGTCGCAGTCCCTGAAGCTCAG...CGGGCCTCTCCTCCAGCCAGTGGTCTGGGTTTCATGTTCCTTTTCTTCTCCGCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000003434.14
ENSMUST00000126980.8
3UTR-3UTR CCA 90 bp ATGGCTTTGGGATGGGTTCTGGGCAGGAGGTCACTGGTACAGAAATATGAGGAAACCCAGACCACTGGCTaGAGGAGAGGCCCGGCGCGG +
Preference number: 2 (lower is better)
Translates to: MALGWVLGRRSLVQKYEETQTTG*RRGPAR
Trigger: CCGCGCCGGGCCTCTCCTCCAGCCAGTGGTCTGGGT...TTCCTCATATTTCTGTACCAGTGACCTCCTGCCCAGAACCCATCCCAAAGCCAT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000003434.14
ENSMUST00000126980.8
3UTR-3UTR TCA 90 bp TGGGATGGGTTCTGGGCAGGAGGTCACTGGTACAGAAATATGAGGAAGTGGAACGGCGCGGGCTCCAGCTaGGTGTGGGCTTGTATGCAT +
Preference number: 2 (lower is better)
Translates to: WDGFWAGGHWYRNMRKWNGAGSS*VWACMH
Trigger: ATGCATACAAGCCCACACTCAGCTGGAGCCCGCGCC...GTTCCACTTCCTCATATTTCTGTACCAGTGACCTCCTGCCCAGAACCCATCCCA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000003434.14
ENSMUST00000126980.8
3UTR-3UTR CCA 90 bp GTGGGCTTGTATGCATTGCAGTGTGCAGTTGAAGAGAACGGAGGAGCAGGGCAGCCTTCCATGATGATGTaGGAGGTGGTGGGGAGGGAG +
Preference number: 2 (lower is better)
Translates to: VGLYALQCAVEENGGAGQPSMMM*EVVGRE
Trigger: CTCCCTCCCCACCACCTCCCACATCATCATGGAAGG...CTGCCCTGCTCCTCCGTTCTCTTCAACTGCACACTGCAATGCATACAAGCCCAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000003434.14
ENSMUST00000126980.8
3UTR-3UTR TCA 90 bp TTGGGATGGGTTCTGGGCAGGAGGTCACTGGTACAGAAATATGAGGAAGTGGAAGGCGCGGGCTCCAGCTaGGTGTGGGCTTGTATGCAT +
Preference number: 2 (lower is better)
Translates to: LGWVLGRRSLVQKYEEVEGAGSS*VWACMH
Trigger: ATGCATACAAGCCCACACTCAGCTGGAGCCCGCGCC...TTCCACTTCCTCATATTTCTGTACCAGTGACCTCCTGCCCAGAACCCATCCCAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000003434.14
ENSMUST00000126980.8
3UTR-3UTR TCA 90 bp ATGGCTTTGGGATGGGTTCTGGGCAGGAGGTCACTGGTACAGAAATATGAGGAACTGCAGGCTCAAGGCTaGGCTCTGCTGAGCACACCT +
Preference number: 2 (lower is better)
Translates to: MALGWVLGRRSLVQKYEELQAQG*ALLSTP
Trigger: AGGTGTGCTCAGCAGAGCTCAGCCTTGAGCCTGCAG...TTCCTCATATTTCTGTACCAGTGACCTCCTGCCCAGAACCCATCCCAAAGCCAT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000003434.14
ENSMUST00000126980.8
3UTR-3UTR CCA 90 bp TGGGATGGGTTCTGGGCAGGAGGTCACTGGTACAGAAATATGAGGAAGTGGAACACCTCCTCAGTGCCTTaGGACAGGCGGTCACACTTG +
Preference number: 2 (lower is better)
Translates to: WDGFWAGGHWYRNMRKWNTSSVP*DRRSHL
Trigger: CAAGTGTGACCGCCTGTCCCAAGGCACTGAGGAGGT...GTTCCACTTCCTCATATTTCTGTACCAGTGACCTCCTGCCCAGAACCCATCCCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000003434.14
ENSMUST00000126980.8
3UTR-3UTR CCA 90 bp TTGGGATGGGTTCTGGGCAGGAGGTCACTGGTACAGAAATATGAGGAAGTGGAACCTTCCATGATGATGTaGGAGGTGGTGGGGAGGGAG +
Preference number: 2 (lower is better)
Translates to: LGWVLGRRSLVQKYEEVEPSMMM*EVVGRE
Trigger: CTCCCTCCCCACCACCTCCCACATCATCATGGAAGG...TTCCACTTCCTCATATTTCTGTACCAGTGACCTCCTGCCCAGAACCCATCCCAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000003434.14
ENSMUST00000126980.8
3UTR-3UTR TCA 90 bp TTGGGATGGGTTCTGGGCAGGAGGTCACTGGTACAGAAATATGAGGAAGTGGAAGTGCCCAGTGCATTTTaGTGGGTCTGCAGGCTCAAG +
Preference number: 2 (lower is better)
Translates to: LGWVLGRRSLVQKYEEVEVPSAF*WVCRLK
Trigger: CTTGAGCCTGCAGACCCATCAAAATGCACTGGGCAC...TTCCACTTCCTCATATTTCTGTACCAGTGACCTCCTGCCCAGAACCCATCCCAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000003434.14
ENSMUST00000126980.8
3UTR-3UTR CCA 90 bp TTGGGATGGGTTCTGGGCAGGAGGTCACTGGTACAGAAATATGAGGAAGTGGAATCACACTTGTCACTGTaGACACAGGCAGCCCCTTCC +
Preference number: 2 (lower is better)
Translates to: LGWVLGRRSLVQKYEEVESHLSL*TQAAPS
Trigger: GGAAGGGGCTGCCTGTGTCCACAGTGACAAGTGTGA...TTCCACTTCCTCATATTTCTGTACCAGTGACCTCCTGCCCAGAACCCATCCCAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000003434.14
ENSMUST00000126980.8
3UTR-3UTR TCA 90 bp ATGGCTTTGGGATGGGTTCTGGGCAGGAGGTCACTGGTACAGAAATATGAGGAAAGAAGAAAAGGAACATaGAACCCAGACCACTGGCTG +
Preference number: 2 (lower is better)
Translates to: MALGWVLGRRSLVQKYEERRKGT*NPDHWL
Trigger: CAGCCAGTGGTCTGGGTTTCATGTTCCTTTTCTTCT...TTCCTCATATTTCTGTACCAGTGACCTCCTGCCCAGAACCCATCCCAAAGCCAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000003434.14
ENSMUST00000126980.8
3UTR CCA 72 bp AGAACGGAGGAGCAGGGCAGCACCAGGGCTCGGAGCTaGCCTGCTGCCCTGAGCTTCAGGGACTGCGACCCA +
Preference number: 3 (lower is better)
Translates to: RTEEQGSTRARS*PAALSFRDCDP
Trigger: TGGGTCGCAGTCCCTGAAGCTCAGGGCAGCAGGCCAGCTCCGAGCCCTGGTGCTGCCCTGCTCCTCCGTTCT
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000003434.14
ENSMUST00000126980.8
3UTR GCA 72 bp TACCCTGGGGCAGAGCTCCCAGTGGCTCTGTGTACATaGCCAGCAGGCCAGGGCTTCAGGGGGCAGCAGTGC +
Preference number: 3 (lower is better)
Translates to: YPGAELPVALCT*PAGQGFRGQQC
Trigger: GCACTGCTGCCCCCTGAAGCCCTGGCCTGCTGGGCATGTACACAGAGCCACTGGGAGCTCTGCCCCAGGGTA
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000003434.14
ENSMUST00000126980.8
3UTR CCA 72 bp GGCCACATGTCACCTACCCTGGGGCAGAGCTCCCAGTaGCTCTGTGTACATGCCCAGCAGGCCAGGGCTTCA +
Preference number: 3 (lower is better)
Translates to: GHMSPTLGQSSQ*LCVHAQQARAS
Trigger: TGAAGCCCTGGCCTGCTGGGCATGTACACAGAGCCACTGGGAGCTCTGCCCCAGGGTAGGTGACATGTGGCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000003434.14
ENSMUST00000126980.8
3UTR CCA 72 bp GAGGGCCAGGGCTGTGGTATGTACAGGGGTGTTCTGTaGTACCCCCGGAGAGCCACATCAGGCCAGCTGGGT +
Preference number: 3 (lower is better)
Translates to: EGQGCGMYRGVL*YPRRATSGQLG
Trigger: ACCCAGCTGGCCTGATGTGGCTCTCCGGGGGTACCACAGAACACCCCTGTACATACCACAGCCCTGGCCCTC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000003434.14
ENSMUST00000126980.8
3UTR GCA 72 bp GTGGTACCCCCGGAGAGCCACATCAGGCCAGCTGGGTaGCCAGTGCATTTTGATGGGTCTGCAGGCTCAAGG +
Preference number: 3 (lower is better)
Translates to: VVPPESHIRPAG*PVHFDGSAGSR
Trigger: CCTTGAGCCTGCAGACCCATCAAAATGCACTGGGCACCCAGCTGGCCTGATGTGGCTCTCCGGGGGTACCAC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000003434.14
ENSMUST00000126980.8
3UTR CCA 72 bp GCTGAGCACACCTGTGAGGAGTCTGTCCGCCTTGGGTaGACAGTGCTGACTGGGCACTTGCGCTGCTGTGAG +
Preference number: 3 (lower is better)
Translates to: AEHTCEESVRLG*TVLTGHLRCCE
Trigger: CTCACAGCAGCGCAAGTGCCCAGTCAGCACTGTCCACCCAAGGCGGACAGACTCCTCACAGGTGTGCTCAGC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000003434.14
ENSMUST00000126980.8
3UTR-3UTR CAA 90 bp GGGCCAGGGCTGTGGTATGTACAGGGGTGTTCTGTGGTACCCCCGGAGAGCCACGGTGCCCAGTGCATTTaGATGGGTCTGCAGGCTCAA +
Preference number: 3 (lower is better)
Translates to: GPGLWYVQGCSVVPPESHGAQCI*MGLQAQ
Trigger: TTGAGCCTGCAGACCCATCAAAATGCACTGGGCACC...GTGGCTCTCCGGGGGTACCACAGAACACCCCTGTACATACCACAGCCCTGGCCC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000003434.14
ENSMUST00000126980.8
3UTR CCA 72 bp GGAGAAGAAAAGGAACATGAAACCCAGACCACTGGCTaGAGGAGAGGCCCGGCGCGGGCTCCAGCTGAGTGT +
Preference number: 3 (lower is better)
Translates to: GEEKEHETQTTG*RRGPARAPAEC
Trigger: ACACTCAGCTGGAGCCCGCGCCGGGCCTCTCCTCCAGCCAGTGGTCTGGGTTTCATGTTCCTTTTCTTCTCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000003434.14
ENSMUST00000126980.8
3UTR CCA 72 bp GGGGACACAGTGTGGAGGGCACACCTCCCATGGCTTTaGGATGGGTTCTGGGCAGGAGGTCACTGGTACAGA +
Preference number: 3 (lower is better)
Translates to: GDTVWRAHLPWL*DGFWAGGHWYR
Trigger: TCTGTACCAGTGACCTCCTGCCCAGAACCCATCCCAAAGCCATGGGAGGTGTGCCCTCCACACTGTGTCCCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000003434.14
ENSMUST00000126980.8
3UTR-3UTR CAA 90 bp TCAAGGCTGAGCTCTGCTGAGCACACCTGTGAGGAGTCTGTCCGCCTTGGGTGGGACAGGCGGTCACACTaGTCACTGTGGACACAGGCA +
Preference number: 3 (lower is better)
Translates to: SRLSSAEHTCEESVRLGWDRRSH*SLWTQA
Trigger: TGCCTGTGTCCACAGTGACAAGTGTGACCGCCTGTC...CCACCCAAGGCGGACAGACTCCTCACAGGTGTGCTCAGCAGAGCTCAGCCTTGA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000003434.14
ENSMUST00000126980.8
3UTR-3UTR CAA 90 bp TATGTACAGGGGTGTTCTGTGGTACCCCCGGAGAGCCACATCAGGCCAGCTGGGGACAGGCGGTCACACTaGTCACTGTGGACACAGGCA +
Preference number: 3 (lower is better)
Translates to: YVQGCSVVPPESHIRPAGDRRSH*SLWTQA
Trigger: TGCCTGTGTCCACAGTGACAAGTGTGACCGCCTGTC...CCCAGCTGGCCTGATGTGGCTCTCCGGGGGTACCACAGAACACCCCTGTACATA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000003434.14
ENSMUST00000126980.8
3UTR-3UTR CAA 90 bp GTCACCTACCCTGGGGCAGAGCTCCCAGTGGCTCTGTGTACATGCCCAGCAGGCCATTGCAGTGTGCAGTaGAAGAGAACGGAGGAGCAG +
Preference number: 3 (lower is better)
Translates to: VTYPGAELPVALCTCPAGHCSVQ*KRTEEQ
Trigger: CTGCTCCTCCGTTCTCTTCAACTGCACACTGCAATG...GCCTGCTGGGCATGTACACAGAGCCACTGGGAGCTCTGCCCCAGGGTAGGTGAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000003434.14
ENSMUST00000126980.8
3UTR-3UTR CAA 90 bp AGCTCCCAGTGGCTCTGTGTACATGCCCAGCAGGCCAGGGCTTCAGGGGGCAGCGTGGGCTTGTATGCATaGCAGTGTGCAGTTGAAGAG +
Preference number: 3 (lower is better)
Translates to: SSQWLCVHAQQARASGGSVGLYA*QCAVEE
Trigger: CTCTTCAACTGCACACTGCAATGCATACAAGCCCAC...GCTGCCCCCTGAAGCCCTGGCCTGCTGGGCATGTACACAGAGCCACTGGGAGCT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000003434.14
ENSMUST00000126980.8
3UTR-3UTR CAA 90 bp GGGCCAGGGCTGTGGTATGTACAGGGGTGTTCTGTGGTACCCCCGGAGAGCCACCAGCTGAGTGTGGGCTaGTATGCATTGCAGTGTGCA +
Preference number: 3 (lower is better)
Translates to: GPGLWYVQGCSVVPPESHQLSVG*YALQCA
Trigger: TGCACACTGCAATGCATACAAGCCCACACTCAGCTG...GTGGCTCTCCGGGGGTACCACAGAACACCCCTGTACATACCACAGCCCTGGCCC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000003434.14
ENSMUST00000126980.8
3UTR TCA 72 bp TGGGTGGACAGTGCTGACTGGGCACTTGCGCTGCTGTaGGAAGTAGGAACCACGGCCACATGTCACCTACCC +
Preference number: 3 (lower is better)
Translates to: WVDSADWALALL*EVGTTATCHLP
Trigger: GGGTAGGTGACATGTGGCCGTGGTTCCTACTTCTCACAGCAGCGCAAGTGCCCAGTCAGCACTGTCCACCCA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000003434.14
ENSMUST00000126980.8
3UTR TCA 72 bp CCTGTGAGGAGTCTGTCCGCCTTGGGTGGACAGTGCTaGCTGGGCACTTGCGCTGCTGTGAGAAGTAGGAAC +
Preference number: 3 (lower is better)
Translates to: PVRSLSALGGQC*LGTCAAVRSRN
Trigger: GTTCCTACTTCTCACAGCAGCGCAAGTGCCCAGTCAGCACTGTCCACCCAAGGCGGACAGACTCCTCACAGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000003434.14
ENSMUST00000126980.8
3UTR CCA 72 bp TCATTTGGGGACACAGTGTGGAGGGCACACCTCCCATaGCTTTGGGATGGGTTCTGGGCAGGAGGTCACTGG +
Preference number: 3 (lower is better)
Translates to: SFGDTVWRAHLP*LWDGFWAGGHW
Trigger: CCAGTGACCTCCTGCCCAGAACCCATCCCAAAGCCATGGGAGGTGTGCCCTCCACACTGTGTCCCCAAATGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000003434.14
ENSMUST00000126980.8
3UTR-3UTR CAA 90 bp AGCGGAGAAGAAAAGGAACATGAAACCCAGACCACTGGCTGGAGGAGAGGCCCGCACCTCCTCAGTGCCTaGGGACAGGCGGTCACACTT +
Preference number: 3 (lower is better)
Translates to: SGEEKEHETQTTGWRRGPHLLSA*GQAVTL
Trigger: AAGTGTGACCGCCTGTCCCAAGGCACTGAGGAGGTG...CGGGCCTCTCCTCCAGCCAGTGGTCTGGGTTTCATGTTCCTTTTCTTCTCCGCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000003434.14
ENSMUST00000126980.8
3UTR TCA 72 bp GCCCAGTGCATTTTGATGGGTCTGCAGGCTCAAGGCTaGGCTCTGCTGAGCACACCTGTGAGGAGTCTGTCC +
Preference number: 3 (lower is better)
Translates to: AQCILMGLQAQG*ALLSTPVRSLS
Trigger: GGACAGACTCCTCACAGGTGTGCTCAGCAGAGCTCAGCCTTGAGCCTGCAGACCCATCAAAATGCACTGGGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000003434.14
ENSMUST00000126980.8
3UTR CCA 72 bp TCAGTGCCTTGGGACAGGCGGTCACACTTGTCACTGTaGACACAGGCAGCCCCTTCCATGATGATGTGGGAG +
Preference number: 3 (lower is better)
Translates to: SVPWDRRSHLSL*TQAAPSMMMWE
Trigger: CTCCCACATCATCATGGAAGGGGCTGCCTGTGTCCACAGTGACAAGTGTGACCGCCTGTCCCAAGGCACTGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000003434.14
ENSMUST00000126980.8
3UTR-3UTR CAA 90 bp CTGAGTGTGGGCTTGTATGCATTGCAGTGTGCAGTTGAAGAGAACGGAGGAGCACACCTCCTCAGTGCCTaGGGACAGGCGGTCACACTT +
Preference number: 3 (lower is better)
Translates to: LSVGLYALQCAVEENGGAHLLSA*GQAVTL
Trigger: AAGTGTGACCGCCTGTCCCAAGGCACTGAGGAGGTG...TGCTCCTCCGTTCTCTTCAACTGCACACTGCAATGCATACAAGCCCACACTCAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000003434.14
ENSMUST00000126980.8
3UTR CCA 72 bp TGGAGGGCACACCTCCCATGGCTTTGGGATGGGTTCTaGGCAGGAGGTCACTGGTACAGAAATATGAGGAAG +
Preference number: 3 (lower is better)
Translates to: WRAHLPWLWDGF*AGGHWYRNMRK
Trigger: CTTCCTCATATTTCTGTACCAGTGACCTCCTGCCCAGAACCCATCCCAAAGCCATGGGAGGTGTGCCCTCCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000003434.14
ENSMUST00000126980.8
3UTR CCA 72 bp TGGGCAGGAGGTCACTGGTACAGAAATATGAGGAAGTaGAACCCCAAACTGGAGACTGCGCCTTCTGGGACA +
Preference number: 3 (lower is better)
Translates to: WAGGHWYRNMRK*NPKLETAPSGT
Trigger: TGTCCCAGAAGGCGCAGTCTCCAGTTTGGGGTTCCACTTCCTCATATTTCTGTACCAGTGACCTCCTGCCCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000003434.14
ENSMUST00000126980.8
3UTR TCA 72 bp ATGGGTTCTGGGCAGGAGGTCACTGGTACAGAAATATaGGGAAGTGGAACCCCAAACTGGAGACTGCGCCTT +
Preference number: 3 (lower is better)
Translates to: MGSGQEVTGTEI*GSGTPNWRLRL
Trigger: AAGGCGCAGTCTCCAGTTTGGGGTTCCACTTCCTCATATTTCTGTACCAGTGACCTCCTGCCCAGAACCCAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000003434.14
ENSMUST00000126980.8
3UTR GCA 72 bp CAGAAATATGAGGAAGTGGAACCCCAAACTGGAGACTaGGCCTTCTGGGACATCACTGGATGGGGTGATGTG +
Preference number: 3 (lower is better)
Translates to: QKYEEVEPQTGD*AFWDITGWGDV
Trigger: CACATCACCCCATCCAGTGATGTCCCAGAAGGCGCAGTCTCCAGTTTGGGGTTCCACTTCCTCATATTTCTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000003434.14
ENSMUST00000126980.8
3UTR CCA 72 bp CCATGGCTTTGGGATGGGTTCTGGGCAGGAGGTCACTaGTACAGAAATATGAGGAAGTGGAACCCCAAACTG +
Preference number: 3 (lower is better)
Translates to: PWLWDGFWAGGH*YRNMRKWNPKL
Trigger: CAGTTTGGGGTTCCACTTCCTCATATTTCTGTACCAGTGACCTCCTGCCCAGAACCCATCCCAAAGCCATGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000003434.14
ENSMUST00000126980.8
3UTR-3UTR CAA 90 bp ATGGCTTTGGGATGGGTTCTGGGCAGGAGGTCACTGGTACAGAAATATGAGGAAGTGGGCTTGTATGCATaGCAGTGTGCAGTTGAAGAG +
Preference number: 3 (lower is better)
Translates to: MALGWVLGRRSLVQKYEEVGLYA*QCAVEE
Trigger: CTCTTCAACTGCACACTGCAATGCATACAAGCCCAC...TTCCTCATATTTCTGTACCAGTGACCTCCTGCCCAGAACCCATCCCAAAGCCAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000003434.14
ENSMUST00000126980.8
CDS-3UTR TCA 90 bp GTGGCTCTGTGTACATGCCCAGCAGGCCAGGGCTTCAGGGGGCAGCAGTGCACGGTCCACCAGGATGCCTaGCTGTGCCGGGCCTGCGGC +
Preference number: 4 (lower is better)
Translates to: VALCTCPAGQGFRGQQCTVHQDA*LCRACG
Trigger: GCCGCAGGCCCGGCACAGTCAGGCATCCTGGTGGAC...CGTGCACTGCTGCCCCCTGAAGCCCTGGCCTGCTGGGCATGTACACAGAGCCAC
69% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000003434.14
ENSMUST00000126980.8
CDS-3UTR GCA 90 bp AGCTCCCAGTGGCTCTGTGTACATGCCCAGCAGGCCAGGGCTTCAGGGGGCAGCAAGACGCGCGCCCGCTaGCGCCCGCCGCCATCTTGT +
Preference number: 4 (lower is better)
Translates to: SSQWLCVHAQQARASGGSKTRAR*RPPPSC
Trigger: ACAAGATGGCGGCGGGCGGCAGCGGGCGCGCGTCTT...GCTGCCCCCTGAAGCCCTGGCCTGCTGGGCATGTACACAGAGCCACTGGGAGCT
69% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000003434.14
CDS-3UTR CCA 90 bp AGCTCCCAGTGGCTCTGTGTACATGCCCAGCAGGCCAGGGCTTCAGGGGGCAGCGCACCGTGGGCTTGGTaGCCTGCCAGTTGTACACGG +
Preference number: 4 (lower is better)
Translates to: SSQWLCVHAQQARASGGSAPWAW*PASCTR
Trigger: CCGTGTACAACTGGCAGGCCACCAAGCCCACGGTGC...GCTGCCCCCTGAAGCCCTGGCCTGCTGGGCATGTACACAGAGCCACTGGGAGCT
66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000003434.14
ENSMUST00000126980.8
CDS-3UTR TCA 90 bp GAGAAGAAAAGGAACATGAAACCCAGACCACTGGCTGGAGGAGAGGCCCGGCGCGTCCACCAGGATGCCTaGCTGTGCCGGGCCTGCGGC +
Preference number: 4 (lower is better)
Translates to: EKKRNMKPRPLAGGEARRVHQDA*LCRACG
Trigger: GCCGCAGGCCCGGCACAGTCAGGCATCCTGGTGGAC...GCGCCGGGCCTCTCCTCCAGCCAGTGGTCTGGGTTTCATGTTCCTTTTCTTCTC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000003434.14
ENSMUST00000126980.8
CDS-3UTR GCA 90 bp CCAGGGCTTCAGGGGGCAGCAGTGCACGCAGGTCAGGACCTGGGACCTCCCAGGCATCCTCCACAGATGTaGCGTTGTTGTTCCCAGCCG +
Preference number: 4 (lower is better)
Translates to: PGLQGAAVHAGQDLGPPRHPPQM*RCCSQP
Trigger: CGGCTGGGAACAACAACGGCACATCTGTGGAGGATG...CCTGGGAGGTCCCAGGTCCTGACCTGCGTGCACTGCTGCCCCCTGAAGCCCTGG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000003434.14
ENSMUST00000126980.8
CDS-3UTR CCA 90 bp GGCTCAAGGCTGAGCTCTGCTGAGCACACCTGTGAGGAGTCTGTCCGCCTTGGGAGCGCTCCTGCACCGTaGGCTTGGTGGCCTGCCAGT +
Preference number: 4 (lower is better)
Translates to: GSRLSSAEHTCEESVRLGSAPAP*AWWPAS
Trigger: ACTGGCAGGCCACCAAGCCCACGGTGCAGGAGCGCT...CCCAAGGCGGACAGACTCCTCACAGGTGTGCTCAGCAGAGCTCAGCCTTGAGCC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000003434.14
ENSMUST00000126980.8
CDS-3UTR CCA 90 bp GAGGGCCAGGGCTGTGGTATGTACAGGGGTGTTCTGTGGTACCCCCGGAGAGCCAGGAACTCCACACAGTaGGCCTCGAGCGCGGGCACT +
Preference number: 4 (lower is better)
Translates to: EGQGCGMYRGVLWYPRRARNSTQ*ASSAGT
Trigger: AGTGCCCGCGCTCGAGGCCCACTGTGTGGAGTTCCT...GGCTCTCCGGGGGTACCACAGAACACCCCTGTACATACCACAGCCCTGGCCCTC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000003434.14
ENSMUST00000126980.8
CDS-3UTR TCA 90 bp GCAGCGGAGAAGAAAAGGAACATGAAACCCAGACCACTGGCTGGAGGAGAGGCCGGACGCGCTGCGAGCTaGGCCCCTTGCCCACCAGGA +
Preference number: 4 (lower is better)
Translates to: AAEKKRNMKPRPLAGGEAGRAAS*APCPPG
Trigger: TCCTGGTGGGCAAGGGGCTCAGCTCGCAGCGCGTCC...GGCCTCTCCTCCAGCCAGTGGTCTGGGTTTCATGTTCCTTTTCTTCTCCGCTGC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000003434.14
ENSMUST00000126980.8
CDS-3UTR TCA 90 bp CAGGCGGTCACACTTGTCACTGTGGACACAGGCAGCCCCTTCCATGATGATGTGGGACGCGCTGCGAGCTaGGCCCCTTGCCCACCAGGA +
Preference number: 4 (lower is better)
Translates to: QAVTLVTVDTGSPFHDDVGRAAS*APCPPG
Trigger: TCCTGGTGGGCAAGGGGCTCAGCTCGCAGCGCGTCC...CACATCATCATGGAAGGGGCTGCCTGTGTCCACAGTGACAAGTGTGACCGCCTG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000003434.14
ENSMUST00000126980.8
CDS-3UTR GCA 90 bp CACATGTCACCTACCCTGGGGCAGAGCTCCCAGTGGCTCTGTGTACATGCCCAGAAGGCGAAGCGCTCCTaGACCGTGGGCTTGGTGGCC +
Preference number: 4 (lower is better)
Translates to: HMSPTLGQSSQWLCVHAQKAKRS*TVGLVA
Trigger: GGCCACCAAGCCCACGGTGCAGGAGCGCTTCGCCTT...CTGGGCATGTACACAGAGCCACTGGGAGCTCTGCCCCAGGGTAGGTGACATGTG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000003434.14
ENSMUST00000126980.8
CDS-3UTR GCA 90 bp GAGGGCCAGGGCTGTGGTATGTACAGGGGTGTTCTGTGGTACCCCCGGAGAGCCTTGCCCACCAGGAAGTaGACGTCGCACAGCACCTCG +
Preference number: 4 (lower is better)
Translates to: EGQGCGMYRGVLWYPRRALPTRK*TSHSTS
Trigger: CGAGGTGCTGTGCGACGTGCACTTCCTGGTGGGCAA...GGCTCTCCGGGGGTACCACAGAACACCCCTGTACATACCACAGCCCTGGCCCTC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000003434.14
ENSMUST00000126980.8
CDS-3UTR GCA 90 bp CCAGGGCTTCAGGGGGCAGCAGTGCACGCAGGTCAGGACCTGGGACCTCCCAGGTGCGTAGACCTTTGGTaGCATAGTGAGAGTCTGGGC +
Preference number: 4 (lower is better)
Translates to: PGLQGAAVHAGQDLGPPRCVDLW*HSESLG
Trigger: GCCCAGACTCTCACTATGGCACCAAAGGTCTACGCA...CCTGGGAGGTCCCAGGTCCTGACCTGCGTGCACTGCTGCCCCCTGAAGCCCTGG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000003434.14
ENSMUST00000126980.8
CDS-3UTR CCA 90 bp CTGGCCTGCTGCCCTGAGCTTCAGGGACTGCGACCCACCACGCTCTGTCCATCCGCCATAGTGAGAGTCTaGGCCCTTCAGCGTGGCACA +
Preference number: 4 (lower is better)
Translates to: LACCPELQGLRPTTLCPSAIVRV*ALQRGT
Trigger: TGTGCCACGCTGAAGGGCCCAGACTCTCACTATGGC...GGATGGACAGAGCGTGGTGGGTCGCAGTCCCTGAAGCTCAGGGCAGCAGGCCAG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000003434.14
ENSMUST00000126980.8
CDS-3UTR TCA 90 bp GCAGCGGAGAAGAAAAGGAACATGAAACCCAGACCACTGGCTGGAGGAGAGGCCACCGGGGCCGGTCGATaGACTCCACACGCGGCTTGG +
Preference number: 4 (lower is better)
Translates to: AAEKKRNMKPRPLAGGEATGAGR*TPHAAW
Trigger: CCAAGCCGCGTGTGGAGTTCATCGACCGGCCCCGGT...GGCCTCTCCTCCAGCCAGTGGTCTGGGTTTCATGTTCCTTTTCTTCTCCGCTGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000003434.14
ENSMUST00000126980.8
CDS-3UTR CCA 90 bp CCTGAGCTTCAGGGACTGCGACCCACCACGCTCTGTCCATCCAAGGCTAGTCCCCCTGCACCGTGGGCTTaGTGGCCTGCCAGTTGTACA +
Preference number: 4 (lower is better)
Translates to: PELQGLRPTTLCPSKASPPAPWA*WPASCT
Trigger: TGTACAACTGGCAGGCCACCAAGCCCACGGTGCAGG...GGGACTAGCCTTGGATGGACAGAGCGTGGTGGGTCGCAGTCCCTGAAGCTCAGG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000003434.14
ENSMUST00000126980.8
CDS-3UTR TCA 90 bp GGCTCAAGGCTGAGCTCTGCTGAGCACACCTGTGAGGAGTCTGTCCGCCTTGGGCTGAGTACAGGAACTTaGGCAGCGCCAGGAAGGCAG +
Preference number: 4 (lower is better)
Translates to: GSRLSSAEHTCEESVRLGLSTGT*AAPGRQ
Trigger: CTGCCTTCCTGGCGCTGCTCAAGTTCCTGTACTCAG...CCCAAGGCGGACAGACTCCTCACAGGTGTGCTCAGCAGAGCTCAGCCTTGAGCC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000003434.14
ENSMUST00000126980.8
CDS-3UTR TCA 90 bp TGGGCTTGTATGCATTGCAGTGTGCAGTTGAAGAGAACGGAGGAGCAGGGCAGCACCGGGGCCGGTCGATaGACTCCACACGCGGCTTGG +
Preference number: 4 (lower is better)
Translates to: WACMHCSVQLKRTEEQGSTGAGR*TPHAAW
Trigger: CCAAGCCGCGTGTGGAGTTCATCGACCGGCCCCGGT...GCTGCCCTGCTCCTCCGTTCTCTTCAACTGCACACTGCAATGCATACAAGCCCA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000003434.14
ENSMUST00000126980.8
CDS-3UTR TCA 90 bp GCCCTGAGCTTCAGGGACTGCGACCCACCACGCTCTGTCCATCCAAGGCTAGTCCAGAACCGTCGCAGCTaGAACCTGTGTCGTTCTGGC +
Preference number: 4 (lower is better)
Translates to: ALSFRDCDPPRSVHPRLVQNRRS*NLCRSG
Trigger: GCCAGAACGACACAGGTTTCAGCTGCGACGGTTCTG...GACTAGCCTTGGATGGACAGAGCGTGGTGGGTCGCAGTCCCTGAAGCTCAGGGC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000003434.14
ENSMUST00000126980.8
CDS-3UTR GCA 90 bp TCAAGGCTGAGCTCTGCTGAGCACACCTGTGAGGAGTCTGTCCGCCTTGGGTGGTTGCCCACCAGGAAGTaGACGTCGCACAGCACCTCG +
Preference number: 4 (lower is better)
Translates to: SRLSSAEHTCEESVRLGWLPTRK*TSHSTS
Trigger: CGAGGTGCTGTGCGACGTGCACTTCCTGGTGGGCAA...CCACCCAAGGCGGACAGACTCCTCACAGGTGTGCTCAGCAGAGCTCAGCCTTGA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000003434.14
ENSMUST00000126980.8
CDS-3UTR GCA 90 bp CACATGTCACCTACCCTGGGGCAGAGCTCCCAGTGGCTCTGTGTACATGCCCAGCTCGAGCGCGGGCACTaGGTACTTCTTGGCCGTGTA +
Preference number: 4 (lower is better)
Translates to: HMSPTLGQSSQWLCVHAQLERGH*VLLGRV
Trigger: TACACGGCCAAGAAGTACGCAGTGCCCGCGCTCGAG...CTGGGCATGTACACAGAGCCACTGGGAGCTCTGCCCCAGGGTAGGTGACATGTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000003434.14
ENSMUST00000126980.8
CDS-3UTR GCA 90 bp GTGGGCTTGTATGCATTGCAGTGTGCAGTTGAAGAGAACGGAGGAGCAGGGCAGCCCGGTCCACCAGGATaGCTGACTGTGCCGGGCCTG +
Preference number: 4 (lower is better)
Translates to: VGLYALQCAVEENGGAGQPGPPG*LTVPGL
Trigger: CAGGCCCGGCACAGTCAGGCATCCTGGTGGACCGGG...CTGCCCTGCTCCTCCGTTCTCTTCAACTGCACACTGCAATGCATACAAGCCCAC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000003434.14
ENSMUST00000126980.8
CDS-3UTR GCA 90 bp TGGGCTTGTATGCATTGCAGTGTGCAGTTGAAGAGAACGGAGGAGCAGGGCAGCCCCGGTCCACCAGGATaGCTGACTGTGCCGGGCCTG +
Preference number: 4 (lower is better)
Translates to: WACMHCSVQLKRTEEQGSPGPPG*LTVPGL
Trigger: CAGGCCCGGCACAGTCAGGCATCCTGGTGGACCGGG...GCTGCCCTGCTCCTCCGTTCTCTTCAACTGCACACTGCAATGCATACAAGCCCA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000003434.14
ENSMUST00000126980.8
CDS-3UTR CCA 90 bp GAGAAGAAAAGGAACATGAAACCCAGACCACTGGCTGGAGGAGAGGCCCGGCGCAGGAACTCCACACAGTaGGCCTCGAGCGCGGGCACT +
Preference number: 4 (lower is better)
Translates to: EKKRNMKPRPLAGGEARRRNSTQ*ASSAGT
Trigger: AGTGCCCGCGCTCGAGGCCCACTGTGTGGAGTTCCT...GCGCCGGGCCTCTCCTCCAGCCAGTGGTCTGGGTTTCATGTTCCTTTTCTTCTC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000003434.14
ENSMUST00000126980.8
CDS-3UTR CCA 90 bp CCTGAGCTTCAGGGACTGCGACCCACCACGCTCTGTCCATCCAAGGCTAGTCCCGCCATAGTGAGAGTCTaGGCCCTTCAGCGTGGCACA +
Preference number: 4 (lower is better)
Translates to: PELQGLRPTTLCPSKASPAIVRV*ALQRGT
Trigger: TGTGCCACGCTGAAGGGCCCAGACTCTCACTATGGC...GGGACTAGCCTTGGATGGACAGAGCGTGGTGGGTCGCAGTCCCTGAAGCTCAGG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000003434.14
ENSMUST00000126980.8
CDS-3UTR CCA 90 bp GGCTCAAGGCTGAGCTCTGCTGAGCACACCTGTGAGGAGTCTGTCCGCCTTGGGGTGGTGGGAGACTCGTaGGTCACCTTGCGTAGACCT +
Preference number: 4 (lower is better)
Translates to: GSRLSSAEHTCEESVRLGVVGDS*VTLRRP
Trigger: AGGTCTACGCAAGGTGACCCACGAGTCTCCCACCAC...CCCAAGGCGGACAGACTCCTCACAGGTGTGCTCAGCAGAGCTCAGCCTTGAGCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000003434.14
ENSMUST00000126980.8
CDS-3UTR CCA 90 bp CCTGAGCTTCAGGGACTGCGACCCACCACGCTCTGTCCATCCAAGGCTAGTCCCGTGGTGGGAGACTCGTaGGTCACCTTGCGTAGACCT +
Preference number: 4 (lower is better)
Translates to: PELQGLRPTTLCPSKASPVVGDS*VTLRRP
Trigger: AGGTCTACGCAAGGTGACCCACGAGTCTCCCACCAC...GGGACTAGCCTTGGATGGACAGAGCGTGGTGGGTCGCAGTCCCTGAAGCTCAGG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000003434.14
ENSMUST00000126980.8
3UTR CAA 72 bp GGAGAGGCCCGGCGCGGGCTCCAGCTGAGTGTGGGCTaGTATGCATTGCAGTGTGCAGTTGAAGAGAACGGA +
Preference number: 4 (lower is better)
Translates to: GEARRGLQLSVG*YALQCAVEENG
Trigger: TCCGTTCTCTTCAACTGCACACTGCAATGCATACAAGCCCACACTCAGCTGGAGCCCGCGCCGGGCCTCTCC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000003434.14
ENSMUST00000126980.8
3UTR CAA 72 bp TGGGGACACAGTGTGGAGGGCACACCTCCCATGGCTTaGGGATGGGTTCTGGGCAGGAGGTCACTGGTACAG +
Preference number: 4 (lower is better)
Translates to: WGHSVEGTPPMA*GWVLGRRSLVQ
Trigger: CTGTACCAGTGACCTCCTGCCCAGAACCCATCCCAAAGCCATGGGAGGTGTGCCCTCCACACTGTGTCCCCA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000003434.14
ENSMUST00000126980.8
CDS-3UTR GCA 90 bp GTCACCTACCCTGGGGCAGAGCTCCCAGTGGCTCTGTGTACATGCCCAGCAGGCACTCGTGGGTCACCTTaGGTAGACCTTTGGTGCCAT +
Preference number: 4 (lower is better)
Translates to: VTYPGAELPVALCTCPAGTRGSP*VDLWCH
Trigger: ATGGCACCAAAGGTCTACGCAAGGTGACCCACGAGT...GCCTGCTGGGCATGTACACAGAGCCACTGGGAGCTCTGCCCCAGGGTAGGTGAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000003434.14
ENSMUST00000126980.8
CDS-3UTR CCA 90 bp GTGGCTCTGTGTACATGCCCAGCAGGCCAGGGCTTCAGGGGGCAGCAGTGCACGCCTTGCGTAGACCTTTaGTGCCATAGTGAGAGTCTG +
Preference number: 4 (lower is better)
Translates to: VALCTCPAGQGFRGQQCTPCVDL*CHSESL
Trigger: CAGACTCTCACTATGGCACCAAAGGTCTACGCAAGG...CGTGCACTGCTGCCCCCTGAAGCCCTGGCCTGCTGGGCATGTACACAGAGCCAC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000003434.14
ENSMUST00000126980.8
3UTR CAA 72 bp ACCACCTCCTCAGTGCCTTGGGACAGGCGGTCACACTaGTCACTGTGGACACAGGCAGCCCCTTCCATGATG +
Preference number: 4 (lower is better)
Translates to: TTSSVPWDRRSH*SLWTQAAPSMM
Trigger: CATCATGGAAGGGGCTGCCTGTGTCCACAGTGACAAGTGTGACCGCCTGTCCCAAGGCACTGAGGAGGTGGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000003434.14
ENSMUST00000126980.8
CDS-3UTR TCA 90 bp GAGAAGAAAAGGAACATGAAACCCAGACCACTGGCTGGAGGAGAGGCCCGGCGCAATGTAGGAAGAGGCTaGCCACCTCCCGGTCCACCA +
Preference number: 4 (lower is better)
Translates to: EKKRNMKPRPLAGGEARRNVGRG*PPPGPP
Trigger: TGGTGGACCGGGAGGTGGTCAGCCTCTTCCTACATT...GCGCCGGGCCTCTCCTCCAGCCAGTGGTCTGGGTTTCATGTTCCTTTTCTTCTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000003434.14
ENSMUST00000126980.8
CDS-3UTR GCA 90 bp GTGGGCTTGTATGCATTGCAGTGTGCAGTTGAAGAGAACGGAGGAGCAGGGCAGATCCCGCTCCAGCACTaGCACCAGCGTGTCCAGGTC +
Preference number: 4 (lower is better)
Translates to: VGLYALQCAVEENGGAGQIPLQH*HQRVQV
Trigger: GACCTGGACACGCTGGTGGCAGTGCTGGAGCGGGAT...CTGCCCTGCTCCTCCGTTCTCTTCAACTGCACACTGCAATGCATACAAGCCCAC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000003434.14
ENSMUST00000126980.8
CDS-3UTR GCA 90 bp CCACCTCCTCAGTGCCTTGGGACAGGCGGTCACACTTGTCACTGTGGACACAGGCATCCTCCACAGATGTaGCGTTGTTGTTCCCAGCCG +
Preference number: 4 (lower is better)
Translates to: PPPQCLGTGGHTCHCGHRHPPQM*RCCSQP
Trigger: CGGCTGGGAACAACAACGGCACATCTGTGGAGGATG...CCTGTGTCCACAGTGACAAGTGTGACCGCCTGTCCCAAGGCACTGAGGAGGTGG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000003434.14
ENSMUST00000126980.8
CDS-3UTR CCA 90 bp TGGGCTTGTATGCATTGCAGTGTGCAGTTGAAGAGAACGGAGGAGCAGGGCAGCGCACCGTGGGCTTGGTaGCCTGCCAGTTGTACACGG +
Preference number: 4 (lower is better)
Translates to: WACMHCSVQLKRTEEQGSAPWAW*PASCTR
Trigger: CCGTGTACAACTGGCAGGCCACCAAGCCCACGGTGC...GCTGCCCTGCTCCTCCGTTCTCTTCAACTGCACACTGCAATGCATACAAGCCCA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000003434.14
ENSMUST00000126980.8
CDS-3UTR CCA 90 bp CCACCTCCTCAGTGCCTTGGGACAGGCGGTCACACTTGTCACTGTGGACACAGGTGGCCGTGTACAGTGTaGTCATCACTGTCTCTGGCC +
Preference number: 4 (lower is better)
Translates to: PPPQCLGTGGHTCHCGHRWPCTV*SSLSLA
Trigger: GGCCAGAGACAGTGATGACCACACTGTACACGGCCA...CCTGTGTCCACAGTGACAAGTGTGACCGCCTGTCCCAAGGCACTGAGGAGGTGG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000003434.14
ENSMUST00000126980.8
CDS-3UTR CCA 90 bp TATGTACAGGGGTGTTCTGTGGTACCCCCGGAGAGCCACATCAGGCCAGCTGGGTGGCCGTGTACAGTGTaGTCATCACTGTCTCTGGCC +
Preference number: 4 (lower is better)
Translates to: YVQGCSVVPPESHIRPAGWPCTV*SSLSLA
Trigger: GGCCAGAGACAGTGATGACCACACTGTACACGGCCA...CCCAGCTGGCCTGATGTGGCTCTCCGGGGGTACCACAGAACACCCCTGTACATA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000003434.14
ENSMUST00000126980.8
CDS-3UTR CCA 90 bp CCACCTCCTCAGTGCCTTGGGACAGGCGGTCACACTTGTCACTGTGGACACAGGCGGCAAACTCCTCGATaGTCATCAGGGGGAATCGGA +
Preference number: 4 (lower is better)
Translates to: PPPQCLGTGGHTCHCGHRRQTPR*SSGGIG
Trigger: TCCGATTCCCCCTGATGACCATCGAGGAGTTTGCCG...CCTGTGTCCACAGTGACAAGTGTGACCGCCTGTCCCAAGGCACTGAGGAGGTGG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000003434.14
ENSMUST00000126980.8
CDS-3UTR CCA 90 bp ACATGTCACCTACCCTGGGGCAGAGCTCCCAGTGGCTCTGTGTACATGCCCAGCCGGCTCTCCACCTGCTaGAACCGGTTAATGCTACAC +
Preference number: 4 (lower is better)
Translates to: TCHLPWGRAPSGSVYMPSRLSTC*NRLMLH
Trigger: GTGTAGCATTAACCGGTTCCAGCAGGTGGAGAGCCG...GCTGGGCATGTACACAGAGCCACTGGGAGCTCTGCCCCAGGGTAGGTGACATGT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000003434.14
ENSMUST00000126980.8
CDS-3UTR CCA 90 bp GAGGGCCAGGGCTGTGGTATGTACAGGGGTGTTCTGTGGTACCCCCGGAGAGCCCCTTGCGTAGACCTTTaGTGCCATAGTGAGAGTCTG +
Preference number: 4 (lower is better)
Translates to: EGQGCGMYRGVLWYPRRAPCVDL*CHSESL
Trigger: CAGACTCTCACTATGGCACCAAAGGTCTACGCAAGG...GGCTCTCCGGGGGTACCACAGAACACCCCTGTACATACCACAGCCCTGGCCCTC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000003434.14
ENSMUST00000126980.8
CDS-3UTR TCA 90 bp AGCGGAGAAGAAAAGGAACATGAAACCCAGACCACTGGCTGGAGGAGAGGCCCGAATGTAGGAAGAGGCTaGCCACCTCCCGGTCCACCA +
Preference number: 4 (lower is better)
Translates to: SGEEKEHETQTTGWRRGPNVGRG*PPPGPP
Trigger: TGGTGGACCGGGAGGTGGTCAGCCTCTTCCTACATT...CGGGCCTCTCCTCCAGCCAGTGGTCTGGGTTTCATGTTCCTTTTCTTCTCCGCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000003434.14
ENSMUST00000126980.8
CDS-3UTR GCA 90 bp TGGGCTTGTATGCATTGCAGTGTGCAGTTGAAGAGAACGGAGGAGCAGGGCAGCCTCGAGCGCGGGCACTaGGTACTTCTTGGCCGTGTA +
Preference number: 4 (lower is better)
Translates to: WACMHCSVQLKRTEEQGSLERGH*VLLGRV
Trigger: TACACGGCCAAGAAGTACGCAGTGCCCGCGCTCGAG...GCTGCCCTGCTCCTCCGTTCTCTTCAACTGCACACTGCAATGCATACAAGCCCA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000003434.14
ENSMUST00000126980.8
CDS-3UTR GCA 90 bp AGTGTGGGCTTGTATGCATTGCAGTGTGCAGTTGAAGAGAACGGAGGAGCAGGGATCCCGCTCCAGCACTaGCACCAGCGTGTCCAGGTC +
Preference number: 4 (lower is better)
Translates to: SVGLYALQCAVEENGGAGIPLQH*HQRVQV
Trigger: GACCTGGACACGCTGGTGGCAGTGCTGGAGCGGGAT...CCCTGCTCCTCCGTTCTCTTCAACTGCACACTGCAATGCATACAAGCCCACACT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000003434.14
ENSMUST00000126980.8
CDS-3UTR GCA 90 bp CACATGTCACCTACCCTGGGGCAGAGCTCCCAGTGGCTCTGTGTACATGCCCAGTGCGTAGACCTTTGGTaGCATAGTGAGAGTCTGGGC +
Preference number: 4 (lower is better)
Translates to: HMSPTLGQSSQWLCVHAQCVDLW*HSESLG
Trigger: GCCCAGACTCTCACTATGGCACCAAAGGTCTACGCA...CTGGGCATGTACACAGAGCCACTGGGAGCTCTGCCCCAGGGTAGGTGACATGTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000003434.14
ENSMUST00000126980.8
CDS-3UTR GCA 90 bp ACATGTCACCTACCCTGGGGCAGAGCTCCCAGTGGCTCTGTGTACATGCCCAGCACTCGTGGGTCACCTTaGGTAGACCTTTGGTGCCAT +
Preference number: 4 (lower is better)
Translates to: TCHLPWGRAPSGSVYMPSTRGSP*VDLWCH
Trigger: ATGGCACCAAAGGTCTACGCAAGGTGACCCACGAGT...GCTGGGCATGTACACAGAGCCACTGGGAGCTCTGCCCCAGGGTAGGTGACATGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000003434.14
ENSMUST00000126980.8
CDS-3UTR CCA 90 bp TGGGCTTGTATGCATTGCAGTGTGCAGTTGAAGAGAACGGAGGAGCAGGGCAGCCCTGCACCGTGGGCTTaGTGGCCTGCCAGTTGTACA +
Preference number: 4 (lower is better)
Translates to: WACMHCSVQLKRTEEQGSPAPWA*WPASCT
Trigger: TGTACAACTGGCAGGCCACCAAGCCCACGGTGCAGG...GCTGCCCTGCTCCTCCGTTCTCTTCAACTGCACACTGCAATGCATACAAGCCCA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000003434.14
ENSMUST00000126980.8
CDS-3UTR CCA 90 bp AGTGTGGGCTTGTATGCATTGCAGTGTGCAGTTGAAGAGAACGGAGGAGCAGGGCACAGGCTGGCCAGCTaGGGCTCATCGAAGAGCCGT +
Preference number: 4 (lower is better)
Translates to: SVGLYALQCAVEENGGAGHRLAS*GSSKSR
Trigger: ACGGCTCTTCGATGAGCCCCAGCTGGCCAGCCTGTG...CCCTGCTCCTCCGTTCTCTTCAACTGCACACTGCAATGCATACAAGCCCACACT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000003434.14
ENSMUST00000126980.8
CDS-3UTR CCA 90 bp GAGAAGAAAAGGAACATGAAACCCAGACCACTGGCTGGAGGAGAGGCCCGGCGCCGGCTCTCCACCTGCTaGAACCGGTTAATGCTACAC +
Preference number: 4 (lower is better)
Translates to: EKKRNMKPRPLAGGEARRRLSTC*NRLMLH
Trigger: GTGTAGCATTAACCGGTTCCAGCAGGTGGAGAGCCG...GCGCCGGGCCTCTCCTCCAGCCAGTGGTCTGGGTTTCATGTTCCTTTTCTTCTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000003434.14
ENSMUST00000126980.8
CDS-3UTR TCA 90 bp GTGGGCTTGTATGCATTGCAGTGTGCAGTTGAAGAGAACGGAGGAGCAGGGCAGCAGAACCGTCGCAGCTaGAACCTGTGTCGTTCTGGC +
Preference number: 4 (lower is better)
Translates to: VGLYALQCAVEENGGAGQQNRRS*NLCRSG
Trigger: GCCAGAACGACACAGGTTTCAGCTGCGACGGTTCTG...CTGCCCTGCTCCTCCGTTCTCTTCAACTGCACACTGCAATGCATACAAGCCCAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000003434.14
ENSMUST00000126980.8
CDS-3UTR GCA 90 bp TTGGGATGGGTTCTGGGCAGGAGGTCACTGGTACAGAAATATGAGGAAGTGGAAAAGGCGAAGCGCTCCTaGACCGTGGGCTTGGTGGCC +
Preference number: 4 (lower is better)
Translates to: LGWVLGRRSLVQKYEEVEKAKRS*TVGLVA
Trigger: GGCCACCAAGCCCACGGTGCAGGAGCGCTTCGCCTT...TTCCACTTCCTCATATTTCTGTACCAGTGACCTCCTGCCCAGAACCCATCCCAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000003434.14
ENSMUST00000126980.8
CDS-3UTR CCA 90 bp TGGGATGGGTTCTGGGCAGGAGGTCACTGGTACAGAAATATGAGGAAGTGGAACCACAGGCTGGCCAGCTaGGGCTCATCGAAGAGCCGT +
Preference number: 4 (lower is better)
Translates to: WDGFWAGGHWYRNMRKWNHRLAS*GSSKSR
Trigger: ACGGCTCTTCGATGAGCCCCAGCTGGCCAGCCTGTG...GTTCCACTTCCTCATATTTCTGTACCAGTGACCTCCTGCCCAGAACCCATCCCA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000003434.14
ENSMUST00000126980.8
CDS-3UTR CCA 90 bp CAGGCGGTCACACTTGTCACTGTGGACACAGGCAGCCCCTTCCATGATGATGTGCGGCAAACTCCTCGATaGTCATCAGGGGGAATCGGA +
Preference number: 4 (lower is better)
Translates to: QAVTLVTVDTGSPFHDDVRQTPR*SSGGIG
Trigger: TCCGATTCCCCCTGATGACCATCGAGGAGTTTGCCG...CACATCATCATGGAAGGGGCTGCCTGTGTCCACAGTGACAAGTGTGACCGCCTG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000003434.14
ENSMUST00000126980.8
CDS-3UTR TCA 90 bp TGGGATGGGTTCTGGGCAGGAGGTCACTGGTACAGAAATATGAGGAAGTGGAACCCAGGTCAATGTCAGTaGAGCCCTCGGCAGCAATGG +
Preference number: 4 (lower is better)
Translates to: WDGFWAGGHWYRNMRKWNPGQCQ*SPRQQW
Trigger: CCATTGCTGCCGAGGGCTTCACTGACATTGACCTGG...GTTCCACTTCCTCATATTTCTGTACCAGTGACCTCCTGCCCAGAACCCATCCCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000003434.14
ENSMUST00000126980.8
CDS-3UTR GCA 90 bp CAGGCGGTCACACTTGTCACTGTGGACACAGGCAGCCCCTTCCATGATGATGTGATGACTTCAGGGATCTaGCCATCCTCCACAGATGTG +
Preference number: 4 (lower is better)
Translates to: QAVTLVTVDTGSPFHDDVMTSGI*PSSTDV
Trigger: CACATCTGTGGAGGATGGGCAGATCCCTGAAGTCAT...CACATCATCATGGAAGGGGCTGCCTGTGTCCACAGTGACAAGTGTGACCGCCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000003434.14
ENSMUST00000126980.8
CDS-3UTR TCA 90 bp TTGGGATGGGTTCTGGGCAGGAGGTCACTGGTACAGAAATATGAGGAAGTGGAACTGAGTACAGGAACTTaGGCAGCGCCAGGAAGGCAG +
Preference number: 4 (lower is better)
Translates to: LGWVLGRRSLVQKYEEVELSTGT*AAPGRQ
Trigger: CTGCCTTCCTGGCGCTGCTCAAGTTCCTGTACTCAG...TTCCACTTCCTCATATTTCTGTACCAGTGACCTCCTGCCCAGAACCCATCCCAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000003434.14
ENSMUST00000126980.8
CDS-3UTR GCA 90 bp CTGAGTGTGGGCTTGTATGCATTGCAGTGTGCAGTTGAAGAGAACGGAGGAGCATTGTCAGCCCGCAGGTaGTTCTTCAGGAACTCCACA +
Preference number: 4 (lower is better)
Translates to: LSVGLYALQCAVEENGGALSARR*FFRNST
Trigger: TGTGGAGTTCCTGAAGAAGCACCTGCGGGCTGACAA...TGCTCCTCCGTTCTCTTCAACTGCACACTGCAATGCATACAAGCCCACACTCAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000003434.14
ENSMUST00000126980.8
CDS-3UTR GCA 90 bp TTGGGATGGGTTCTGGGCAGGAGGTCACTGGTACAGAAATATGAGGAAGTGGAAATGACTTCAGGGATCTaGCCATCCTCCACAGATGTG +
Preference number: 4 (lower is better)
Translates to: LGWVLGRRSLVQKYEEVEMTSGI*PSSTDV
Trigger: CACATCTGTGGAGGATGGGCAGATCCCTGAAGTCAT...TTCCACTTCCTCATATTTCTGTACCAGTGACCTCCTGCCCAGAACCCATCCCAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000003434.14
ENSMUST00000126980.8
CDS CCA 90 bp CTTGGTGGCCTGCCAGTTGTACACGGGCTCGCGCAGCAGCGCGCCTaGGCCCGCGTCGTCGCGCTCGTCGCCCACGGCCTGCGCGTCAGT +
Preference number: 5 (lower is better)
Translates to: LGGLPVVHGLAQQRA*ARVVALVAHGLRVS
Trigger: ACTGACGCGCAGGCCGTGGGCGACGAGCGCGACGACGCGGGCCCAGGCGCGCTGCTGCGCGAGCCCGTGTACAACTGGCAGGCCACCAAG
74% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000003434.14
ENSMUST00000126980.8
CDS GCA 90 bp ACAGCGCTTCCCACAGCTAGCACAAACCTGTGCGCGGGGACGCGCTaGGAGCTGAGCCCCTTGCCCACCAGGAAGTGCACGTCGCACAGC +
Preference number: 5 (lower is better)
Translates to: TALPTASTNLCAGTR*ELSPLPTRKCTSHS
Trigger: GCTGTGCGACGTGCACTTCCTGGTGGGCAAGGGGCTCAGCTCGCAGCGCGTCCCCGCGCACAGGTTTGTGCTAGCTGTGGGAAGCGCTGT
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000003434.14
ENSMUST00000126980.8
CDS TCA 90 bp TTCCCACAGCTAGCACAAACCTGTGCGCGGGGACGCGCTGCGAGCTaGGCCCCTTGCCCACCAGGAAGTGCACGTCGCACAGCACCTCGT +
Preference number: 5 (lower is better)
Translates to: FPQLAQTCARGRAAS*APCPPGSARRTAPR
Trigger: ACGAGGTGCTGTGCGACGTGCACTTCCTGGTGGGCAAGGGGCTCAGCTCGCAGCGCGTCCCCGCGCACAGGTTTGTGCTAGCTGTGGGAA
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000003434.14
ENSMUST00000126980.8
CDS-3UTR CAA 90 bp CCAGGGCTTCAGGGGGCAGCAGTGCACGCAGGTCAGGACCTGGGACCTCCCAGGAGCAGCATGAAGGCATaGTCAGCCCGCAGGTGCTTC +
Preference number: 5 (lower is better)
Translates to: PGLQGAAVHAGQDLGPPRSSMKA*SARRCF
Trigger: GAAGCACCTGCGGGCTGACAATGCCTTCATGCTGCT...CCTGGGAGGTCCCAGGTCCTGACCTGCGTGCACTGCTGCCCCCTGAAGCCCTGG
66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000003434.14
ENSMUST00000126980.8
CDS-3UTR CAA 90 bp CCAGGGCTTCAGGGGGCAGCAGTGCACGCAGGTCAGGACCTGGGACCTCCCAGGGACTCGTGGGTCACCTaGCGTAGACCTTTGGTGCCA +
Preference number: 5 (lower is better)
Translates to: PGLQGAAVHAGQDLGPPRDSWVT*RRPLVP
Trigger: TGGCACCAAAGGTCTACGCAAGGTGACCCACGAGTC...CCTGGGAGGTCCCAGGTCCTGACCTGCGTGCACTGCTGCCCCCTGAAGCCCTGG
66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000003434.14
ENSMUST00000126980.8
CDS-3UTR CAA 90 bp GGGCCAGGGCTGTGGTATGTACAGGGGTGTTCTGTGGTACCCCCGGAGAGCCACTCCTGCACCGTGGGCTaGGTGGCCTGCCAGTTGTAC +
Preference number: 5 (lower is better)
Translates to: GPGLWYVQGCSVVPPESHSCTVG*VACQLY
Trigger: GTACAACTGGCAGGCCACCAAGCCCACGGTGCAGGA...GTGGCTCTCCGGGGGTACCACAGAACACCCCTGTACATACCACAGCCCTGGCCC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000003434.14
ENSMUST00000126980.8
CDS GCA 90 bp CCCCCGTGGTGGGAGACTCGTGGGTCACCTTGCGTAGACCTTTGGTaGCATAGTGAGAGTCTGGGCCCTTCAGCGTGGCACAGGCGGTGT +
Preference number: 5 (lower is better)
Translates to: PPWWETRGSPCVDLW*HSESLGPSAWHRRC
Trigger: ACACCGCCTGTGCCACGCTGAAGGGCCCAGACTCTCACTATGGCACCAAAGGTCTACGCAAGGTGACCCACGAGTCTCCCACCACGGGGG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000003434.14
ENSMUST00000126980.8
CDS-3UTR CAA 90 bp CACATGTCACCTACCCTGGGGCAGAGCTCCCAGTGGCTCTGTGTACATGCCCAGTGCGAGCTGAGCCCCTaGCCCACCAGGAAGTGCACG +
Preference number: 5 (lower is better)
Translates to: HMSPTLGQSSQWLCVHAQCELSP*PTRKCT
Trigger: CGTGCACTTCCTGGTGGGCAAGGGGCTCAGCTCGCA...CTGGGCATGTACACAGAGCCACTGGGAGCTCTGCCCCAGGGTAGGTGACATGTG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000003434.14
ENSMUST00000126980.8
CDS-3UTR CAA 90 bp GTGGCTCTGTGTACATGCCCAGCAGGCCAGGGCTTCAGGGGGCAGCAGTGCACGCTGAAGCTGCTGCCGTaGACACTCAGCCTCAGACCA +
Preference number: 5 (lower is better)
Translates to: VALCTCPAGQGFRGQQCTLKLLP*TLSLRP
Trigger: TGGTCTGAGGCTGAGTGTCAACGGCAGCAGCTTCAG...CGTGCACTGCTGCCCCCTGAAGCCCTGGCCTGCTGGGCATGTACACAGAGCCAC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000003434.14
ENSMUST00000126980.8
CDS GCA 90 bp AGCCGTGCCTGTGTGAGCAGCATGAAGGCATTGTCAGCCCGCAGGTaGTTCTTCAGGAACTCCACACAGTGGGCCTCGAGCGCGGGCACT +
Preference number: 5 (lower is better)
Translates to: SRACVSSMKALSARR*FFRNSTQWASSAGT
Trigger: AGTGCCCGCGCTCGAGGCCCACTGTGTGGAGTTCCTGAAGAAGCACCTGCGGGCTGACAATGCCTTCATGCTGCTCACACAGGCACGGCT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000003434.14
ENSMUST00000126980.8
ENSMUST00000131876.2
CDS-3UTR CAA 90 bp GAGGGCCAGGGCTGTGGTATGTACAGGGGTGTTCTGTGGTACCCCCGGAGAGCCATGAGACTCAGGGCCTaGCCCAGCACCTTCCTCTTG +
Preference number: 5 (lower is better)
Translates to: EGQGCGMYRGVLWYPRRAMRLRA*PSTFLL
Trigger: CAAGAGGAAGGTGCTGGGCAAGGCCCTGAGTCTCAT...GGCTCTCCGGGGGTACCACAGAACACCCCTGTACATACCACAGCCCTGGCCCTC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000003434.14
ENSMUST00000126980.8
CDS-3UTR CAA 90 bp GGGCCAGGGCTGTGGTATGTACAGGGGTGTTCTGTGGTACCCCCGGAGAGCCACTCTGAGTACAGGAACTaGAGCAGCGCCAGGAAGGCA +
Preference number: 5 (lower is better)
Translates to: GPGLWYVQGCSVVPPESHSEYRN*SSARKA
Trigger: TGCCTTCCTGGCGCTGCTCAAGTTCCTGTACTCAGA...GTGGCTCTCCGGGGGTACCACAGAACACCCCTGTACATACCACAGCCCTGGCCC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000003434.14
ENSMUST00000126980.8
CDS-3UTR CAA 90 bp GTCACCTACCCTGGGGCAGAGCTCCCAGTGGCTCTGTGTACATGCCCAGCAGGCTCTGAGTACAGGAACTaGAGCAGCGCCAGGAAGGCA +
Preference number: 5 (lower is better)
Translates to: VTYPGAELPVALCTCPAGSEYRN*SSARKA
Trigger: TGCCTTCCTGGCGCTGCTCAAGTTCCTGTACTCAGA...GCCTGCTGGGCATGTACACAGAGCCACTGGGAGCTCTGCCCCAGGGTAGGTGAC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000003434.14
ENSMUST00000126980.8
CDS GCA 90 bp CTGAAGCTGCTGCCGTTGACACTCAGCCTCAGACCAGCGCACGACTaGATTGAAGAGCCGAACCTCACGAATGCCCAGGGTATCCCGCTC +
Preference number: 5 (lower is better)
Translates to: LKLLPLTLSLRPAHD*IEEPNLTNAQGIPL
Trigger: GAGCGGGATACCCTGGGCATTCGTGAGGTTCGGCTCTTCAATGCAGTCGTGCGCTGGTCTGAGGCTGAGTGTCAACGGCAGCAGCTTCAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000003434.14
ENSMUST00000126980.8
ENSMUST00000131876.2
CDS-3UTR CAA 90 bp AGCGGAGAAGAAAAGGAACATGAAACCCAGACCACTGGCTGGAGGAGAGGCCCGTCCTGCACCGTGGGCTaGGTGGCCTGCCAGTTGTAC +
Preference number: 5 (lower is better)
Translates to: SGEEKEHETQTTGWRRGPSCTVG*VACQLY
Trigger: GTACAACTGGCAGGCCACCAAGCCCACGGTGCAGGA...CGGGCCTCTCCTCCAGCCAGTGGTCTGGGTTTCATGTTCCTTTTCTTCTCCGCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000003434.14
ENSMUST00000126980.8
CDS-3UTR CAA 90 bp CCACCTCCTCAGTGCCTTGGGACAGGCGGTCACACTTGTCACTGTGGACACAGGAGCAGCATGAAGGCATaGTCAGCCCGCAGGTGCTTC +
Preference number: 5 (lower is better)
Translates to: PPPQCLGTGGHTCHCGHRSSMKA*SARRCF
Trigger: GAAGCACCTGCGGGCTGACAATGCCTTCATGCTGCT...CCTGTGTCCACAGTGACAAGTGTGACCGCCTGTCCCAAGGCACTGAGGAGGTGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000003434.14
ENSMUST00000126980.8
CDS-3UTR CAA 90 bp GAGGGCCAGGGCTGTGGTATGTACAGGGGTGTTCTGTGGTACCCCCGGAGAGCCGATCTGGATGTTCACTaGGTAGTCAGTAGGCCCGTG +
Preference number: 5 (lower is better)
Translates to: EGQGCGMYRGVLWYPRRADLDVH*VVSRPV
Trigger: CACGGGCCTACTGACTACCAAGTGAACATCCAGATC...GGCTCTCCGGGGGTACCACAGAACACCCCTGTACATACCACAGCCCTGGCCCTC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000003434.14
ENSMUST00000126980.8
CDS-3UTR CAA 90 bp CACATGTCACCTACCCTGGGGCAGAGCTCCCAGTGGCTCTGTGTACATGCCCAGGACTCGTGGGTCACCTaGCGTAGACCTTTGGTGCCA +
Preference number: 5 (lower is better)
Translates to: HMSPTLGQSSQWLCVHAQDSWVT*RRPLVP
Trigger: TGGCACCAAAGGTCTACGCAAGGTGACCCACGAGTC...CTGGGCATGTACACAGAGCCACTGGGAGCTCTGCCCCAGGGTAGGTGACATGTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000003434.14
ENSMUST00000126980.8
CDS GCA 90 bp GTGCTTCTTCAGGAACTCCACACAGTGGGCCTCGAGCGCGGGCACTaGGTACTTCTTGGCCGTGTACAGTGTGGTCATCACTGTCTCTGG +
Preference number: 5 (lower is better)
Translates to: VLLQELHTVGLERGH*VLLGRVQCGHHCLW
Trigger: CCAGAGACAGTGATGACCACACTGTACACGGCCAAGAAGTACGCAGTGCCCGCGCTCGAGGCCCACTGTGTGGAGTTCCTGAAGAAGCAC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000003434.14
ENSMUST00000126980.8
ENSMUST00000131876.2
CDS CCA 90 bp TCCGCTGTGTTCTTGTCTATACTCTCCAGGCACAGGCTGGCCAGCTaGGGCTCATCGAAGAGCCGTGCCTGTGTGAGCAGCATGAAGGCA +
Preference number: 5 (lower is better)
Translates to: SAVFLSILSRHRLAS*GSSKSRACVSSMKA
Trigger: TGCCTTCATGCTGCTCACACAGGCACGGCTCTTCGATGAGCCCCAGCTGGCCAGCCTGTGCCTGGAGAGTATAGACAAGAACACAGCGGA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000003434.14
ENSMUST00000126980.8
ENSMUST00000131876.2
CDS-3UTR CAA 90 bp GGCTCAAGGCTGAGCTCTGCTGAGCACACCTGTGAGGAGTCTGTCCGCCTTGGGGATCTGGATGTTCACTaGGTAGTCAGTAGGCCCGTG +
Preference number: 5 (lower is better)
Translates to: GSRLSSAEHTCEESVRLGDLDVH*VVSRPV
Trigger: CACGGGCCTACTGACTACCAAGTGAACATCCAGATC...CCCAAGGCGGACAGACTCCTCACAGGTGTGCTCAGCAGAGCTCAGCCTTGAGCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000003434.14
ENSMUST00000126980.8
CDS-3UTR CAA 90 bp CTGAGTGTGGGCTTGTATGCATTGCAGTGTGCAGTTGAAGAGAACGGAGGAGCATGCGAGCTGAGCCCCTaGCCCACCAGGAAGTGCACG +
Preference number: 5 (lower is better)
Translates to: LSVGLYALQCAVEENGGACELSP*PTRKCT
Trigger: CGTGCACTTCCTGGTGGGCAAGGGGCTCAGCTCGCA...TGCTCCTCCGTTCTCTTCAACTGCACACTGCAATGCATACAAGCCCACACTCAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000003434.14
ENSMUST00000126980.8
CDS CCA 90 bp CGGAAGGTGCTGGCAGAACCGTCGCAGCTGAAACCTGTGTCGTTCTaGCCAAGGACTGTGTTGCTGTCCGTGTGGATGATCTGGATGTTC +
Preference number: 5 (lower is better)
Translates to: RKVLAEPSQLKPVSF*PRTVLLSVWMIWMF
Trigger: GAACATCCAGATCATCCACACGGACAGCAACACAGTCCTTGGCCAGAACGACACAGGTTTCAGCTGCGACGGTTCTGCCAGCACCTTCCG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000003434.14
ENSMUST00000126980.8
CDS-3UTR CAA 90 bp TATGTACAGGGGTGTTCTGTGGTACCCCCGGAGAGCCACATCAGGCCAGCTGGGGTAGCCATCCCACCATaGAACATGGCGTCAAAGACA +
Preference number: 5 (lower is better)
Translates to: YVQGCSVVPPESHIRPAGVAIPP*NMASKT
Trigger: TGTCTTTGACGCCATGTTCAATGGTGGGATGGCTAC...CCCAGCTGGCCTGATGTGGCTCTCCGGGGGTACCACAGAACACCCCTGTACATA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000003434.14
ENSMUST00000126980.8
CDS-3UTR CAA 90 bp AGTGTGGGCTTGTATGCATTGCAGTGTGCAGTTGAAGAGAACGGAGGAGCAGGGCTGAAGCTGCTGCCGTaGACACTCAGCCTCAGACCA +
Preference number: 5 (lower is better)
Translates to: SVGLYALQCAVEENGGAGLKLLP*TLSLRP
Trigger: TGGTCTGAGGCTGAGTGTCAACGGCAGCAGCTTCAG...CCCTGCTCCTCCGTTCTCTTCAACTGCACACTGCAATGCATACAAGCCCACACT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000003434.14
ENSMUST00000126980.8
CDS-3UTR CAA 90 bp ATGGCTTTGGGATGGGTTCTGGGCAGGAGGTCACTGGTACAGAAATATGAGGAAATGAGACTCAGGGCCTaGCCCAGCACCTTCCTCTTG +
Preference number: 5 (lower is better)
Translates to: MALGWVLGRRSLVQKYEEMRLRA*PSTFLL
Trigger: CAAGAGGAAGGTGCTGGGCAAGGCCCTGAGTCTCAT...TTCCTCATATTTCTGTACCAGTGACCTCCTGCCCAGAACCCATCCCAAAGCCAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000003434.14
ENSMUST00000126980.8
CDS CAA 72 bp AACCTGTGCGCGGGGACGCGCTGCGAGCTGAGCCCCTaGCCCACCAGGAAGTGCACGTCGCACAGCACCTCG +
Preference number: 6 (lower is better)
Translates to: NLCAGTRCELSP*PTRKCTSHSTS
Trigger: CGAGGTGCTGTGCGACGTGCACTTCCTGGTGGGCAAGGGGCTCAGCTCGCAGCGCGTCCCCGCGCACAGGTT
69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000003434.14
ENSMUST00000126980.8
CDS GCA 72 bp CCCACAGCTAGCACAAACCTGTGCGCGGGGACGCGCTaGGAGCTGAGCCCCTTGCCCACCAGGAAGTGCACG +
Preference number: 6 (lower is better)
Translates to: PTASTNLCAGTR*ELSPLPTRKCT
Trigger: CGTGCACTTCCTGGTGGGCAAGGGGCTCAGCTCGCAGCGCGTCCCCGCGCACAGGTTTGTGCTAGCTGTGGG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000003434.14
ENSMUST00000126980.8
CDS GCA 72 bp TCAAAGACAGCGCTTCCCACAGCTAGCACAAACCTGTaGGCGGGGACGCGCTGCGAGCTGAGCCCCTTGCCC +
Preference number: 6 (lower is better)
Translates to: SKTALPTASTNL*AGTRCELSPLP
Trigger: GGGCAAGGGGCTCAGCTCGCAGCGCGTCCCCGCGCACAGGTTTGTGCTAGCTGTGGGAAGCGCTGTCTTTGA
65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000003434.14
ENSMUST00000126980.8
CDS CAA 72 bp CTCTCCACCTGCTGGAACCGGTTAATGCTACACTCCTaGCCCCGCAGGCAACACCGGGGCCGGTCGATGAAC +
Preference number: 6 (lower is better)
Translates to: LSTCWNRLMLHS*PRRQHRGRSMN
Trigger: GTTCATCGACCGGCCCCGGTGTTGCCTGCGGGGCAAGGAGTGTAGCATTAACCGGTTCCAGCAGGTGGAGAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000003434.14
ENSMUST00000126980.8
ENSMUST00000131876.2
CDS CAA 90 bp AGGAACTCCACACAGTGGGCCTCGAGCGCGGGCACTGCGTACTTCTaGGCCGTGTACAGTGTGGTCATCACTGTCTCTGGCCCGATCTGC +
Preference number: 6 (lower is better)
Translates to: RNSTQWASSAGTAYF*AVYSVVITVSGPIC
Trigger: GCAGATCGGGCCAGAGACAGTGATGACCACACTGTACACGGCCAAGAAGTACGCAGTGCCCGCGCTCGAGGCCCACTGTGTGGAGTTCCT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000003434.14
ENSMUST00000126980.8
ENSMUST00000131876.2
CDS GCA 72 bp CAGGAACTCCACACAGTGGGCCTCGAGCGCGGGCACTaGGTACTTCTTGGCCGTGTACAGTGTGGTCATCAC +
Preference number: 6 (lower is better)
Translates to: QELHTVGLERGH*VLLGRVQCGHH
Trigger: GTGATGACCACACTGTACACGGCCAAGAAGTACGCAGTGCCCGCGCTCGAGGCCCACTGTGTGGAGTTCCTG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000003434.14
ENSMUST00000126980.8
ENSMUST00000131876.2
CDS CAA 72 bp ACACAGTGGGCCTCGAGCGCGGGCACTGCGTACTTCTaGGCCGTGTACAGTGTGGTCATCACTGTCTCTGGC +
Preference number: 6 (lower is better)
Translates to: TQWASSAGTAYF*AVYSVVITVSG
Trigger: GCCAGAGACAGTGATGACCACACTGTACACGGCCAAGAAGTACGCAGTGCCCGCGCTCGAGGCCCACTGTGT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000003434.14
ENSMUST00000126980.8
ENSMUST00000131876.2
CDS GCA 72 bp AACCTCACGAATGCCCAGGGTATCCCGCTCCAGCACTaGCACCAGCGTGTCCAGGTCAATGTCAGTGAAGCC +
Preference number: 6 (lower is better)
Translates to: NLTNAQGIPLQH*HQRVQVNVSEA
Trigger: GGCTTCACTGACATTGACCTGGACACGCTGGTGGCAGTGCTGGAGCGGGATACCCTGGGCATTCGTGAGGTT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000003434.14
ENSMUST00000126980.8
ENSMUST00000131876.2
CDS CAA 90 bp TCAATGTCAGTGAAGCCCTCGGCAGCAATGGCGTCCGCTGTGTTCTaGTCTATACTCTCCAGGCACAGGCTGGCCAGCTGGGGCTCATCG +
Preference number: 6 (lower is better)
Translates to: SMSVKPSAAMASAVF*SILSRHRLASWGSS
Trigger: CGATGAGCCCCAGCTGGCCAGCCTGTGCCTGGAGAGTATAGACAAGAACACAGCGGACGCCATTGCTGCCGAGGGCTTCACTGACATTGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000003434.14
ENSMUST00000126980.8
ENSMUST00000131876.2
CDS CAA 90 bp CAGCACCTTCCTCTTGTTCTCGGGTGTCACCTGAAGCTGCTGCCGTaGACACTCAGCCTCAGACCAGCGCACGACTGCATTGAAGAGCCG +
Preference number: 6 (lower is better)
Translates to: QHLPLVLGCHLKLLP*TLSLRPAHDCIEEP
Trigger: CGGCTCTTCAATGCAGTCGTGCGCTGGTCTGAGGCTGAGTGTCAACGGCAGCAGCTTCAGGTGACACCCGAGAACAAGAGGAAGGTGCTG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000003434.14
ENSMUST00000126980.8
ENSMUST00000131876.2
CDS CAA 72 bp CCTCTTGTTCTCGGGTGTCACCTGAAGCTGCTGCCGTaGACACTCAGCCTCAGACCAGCGCACGACTGCATT +
Preference number: 6 (lower is better)
Translates to: PLVLGCHLKLLP*TLSLRPAHDCI
Trigger: AATGCAGTCGTGCGCTGGTCTGAGGCTGAGTGTCAACGGCAGCAGCTTCAGGTGACACCCGAGAACAAGAGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000003434.14
ENSMUST00000126980.8
ENSMUST00000131876.2
CDS CAA 72 bp ATGGTCATCAGGGGGAATCGGATGAGACTCAGGGCCTaGCCCAGCACCTTCCTCTTGTTCTCGGGTGTCACC +
Preference number: 6 (lower is better)
Translates to: MVIRGNRMRLRA*PSTFLLFSGVT
Trigger: GGTGACACCCGAGAACAAGAGGAAGGTGCTGGGCAAGGCCCTGAGTCTCATCCGATTCCCCCTGATGACCAT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000003434.14
ENSMUST00000126980.8
ENSMUST00000131876.2
CDS TCA 72 bp GGTCATCACTGTCTCTGGCCCGATCTGCACTTCATCTaGGTACAGGAACTTGAGCAGCGCCAGGAAGGCAGC +
Preference number: 6 (lower is better)
Translates to: GHHCLWPDLHFI*VQELEQRQEGS
Trigger: GCTGCCTTCCTGGCGCTGCTCAAGTTCCTGTACTCAGATGAAGTGCAGATCGGGCCAGAGACAGTGATGACC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000003434.14
ENSMUST00000126980.8
ENSMUST00000131876.2
CDS CCA 72 bp CTGGCAGAACCGTCGCAGCTGAAACCTGTGTCGTTCTaGCCAAGGACTGTGTTGCTGTCCGTGTGGATGATC +
Preference number: 6 (lower is better)
Translates to: LAEPSQLKPVSF*PRTVLLSVWMI
Trigger: GATCATCCACACGGACAGCAACACAGTCCTTGGCCAGAACGACACAGGTTTCAGCTGCGACGGTTCTGCCAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000003434.14
ENSMUST00000126980.8
CDS CAA 72 bp CAGCTGAAACCTGTGTCGTTCTGGCCAAGGACTGTGTaGCTGTCCGTGTGGATGATCTGGATGTTCACTTGG +
Preference number: 6 (lower is better)
Translates to: QLKPVSFWPRTV*LSVWMIWMFTW
Trigger: CCAAGTGAACATCCAGATCATCCACACGGACAGCAACACAGTCCTTGGCCAGAACGACACAGGTTTCAGCTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000003434.14
ENSMUST00000126980.8