RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for BTBD19 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000073771

Ensembl transcript IDs: ENSMUST00000143213.9, ENSMUST00000153257.2, ENSMUST00000183310.2

Found 77 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp AGCTGTTGTCAGCACCTCCAGCACCCTTCTTCCTGTGGGAGGGTGTaGGGATGTGGGGTACAGAGCACACTGACTGCAGACAGACATGAC +
Preference number: 1 (lower is better)
Translates to: SCCQHLQHPSSCGRV*GCGVQSTLTADRHD
Trigger: GTCATGTCTGTCTGCAGTCAGTGTGCTCTGTACCCCACATCCTCACACCCTCCCACAGGAAGAAGGGTGCTGGAGGTGCTGACAACAGCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000153257.2
3UTR CCA 90 bp CATATTCCACAGCTGTTGTCAGCACCTCCAGCACCCTTCTTCCTGTaGGAGGGTGTGAGGATGTGGGGTACAGAGCACACTGACTGCAGA +
Preference number: 1 (lower is better)
Translates to: HIPQLLSAPPAPFFL*EGVRMWGTEHTDCR
Trigger: TCTGCAGTCAGTGTGCTCTGTACCCCACATCCTCACACCCTCCCACAGGAAGAAGGGTGCTGGAGGTGCTGACAACAGCTGTGGAATATG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000153257.2
3UTR CCA 90 bp GCCACCCTCGTTTCCGGTCTCAGGACATCACCCAAGCCACAACTTTaGGCCCATTGCGCAATCCCTACTCTTCCACAGAGGCTTAGGTTT +
Preference number: 1 (lower is better)
Translates to: ATLVSGLRTSPKPQL*AHCAIPTLPQRLRF
Trigger: AAACCTAAGCCTCTGTGGAAGAGTAGGGATTGCGCAATGGGCCCAAAGTTGTGGCTTGGGTGATGTCCTGAGACCGGAAACGAGGGTGGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000183310.2
3UTR GCA 90 bp GTTTCCGGTCTCAGGACATCACCCAAGCCACAACTTTGGGCCCATTaGGCAATCCCTACTCTTCCACAGAGGCTTAGGTTTCACTCTAGA +
Preference number: 1 (lower is better)
Translates to: VSGLRTSPKPQLWAH*AIPTLPQRLRFHSR
Trigger: TCTAGAGTGAAACCTAAGCCTCTGTGGAAGAGTAGGGATTGCGCAATGGGCCCAAAGTTGTGGCTTGGGTGATGTCCTGAGACCGGAAAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000183310.2
3UTR-3UTR CCA 90 bp GTAGTGACCCCAGGCCAAAGGTTACAGCAACCTGCAGAGCCTCACAGACCAGCTGCACCCTTCTTCCTGTaGGAGGGTGTGAGGATGTGG +
Preference number: 2 (lower is better)
Translates to: VVTPGQRLQQPAEPHRPAAPFFL*EGVRMW
Trigger: CCACATCCTCACACCCTCCCACAGGAAGAAGGGTGC...AGCTGGTCTGTGAGGCTCTGCAGGTTGCTGTAACCTTTGGCCTGGGGTCACTAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000153257.2
3UTR-3UTR TCA 90 bp CAGCTGTTGTCAGCACCTCCAGCACCCTTCTTCCTGTGGGAGGGTGTGAGGATGATCACCATCATGAGGTaGGACCACATTTTCCATCTT +
Preference number: 2 (lower is better)
Translates to: QLLSAPPAPFFLWEGVRMITIMR*DHIFHL
Trigger: AAGATGGAAAATGTGGTCTCACCTCATGATGGTGAT...CATCCTCACACCCTCCCACAGGAAGAAGGGTGCTGGAGGTGCTGACAACAGCTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000153257.2
3UTR-3UTR CCA 90 bp GCTTATGCAACAAAGGCCACCCTCGTTTCCGGTCTCAGGACATCACCCAAGCCATCGGGAGCTGTAGTTTaGGATGTAGTCAACTTCCTG +
Preference number: 2 (lower is better)
Translates to: AYATKATLVSGLRTSPKPSGAVV*DVVNFL
Trigger: CAGGAAGTTGACTACATCCCAAACTACAGCTCCCGA...TGGCTTGGGTGATGTCCTGAGACCGGAAACGAGGGTGGCCTTTGTTGCATAAGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000183310.2
3UTR-3UTR TCA 90 bp CCTAGAAGGGAGAAAAGGCATGAGGTAGGCAAGAATGAGGTCCGGGTTCCAGATTTGCAGAATGCCGCATaGGCTTATGCAACAAAGGCC +
Preference number: 2 (lower is better)
Translates to: PRREKRHEVGKNEVRVPDLQNAA*AYATKA
Trigger: GGCCTTTGTTGCATAAGCTCATGCGGCATTCTGCAA...ATCTGGAACCCGGACCTCATTCTTGCCTACCTCATGCCTTTTCTCCCTTCTAGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000183310.2
3UTR TCA 72 bp CAGCACCTCCAGCACCCTTCTTCCTGTGGGAGGGTGTaGGGATGTGGGGTACAGAGCACACTGACTGCAGAC +
Preference number: 3 (lower is better)
Translates to: QHLQHPSSCGRV*GCGVQSTLTAD
Trigger: GTCTGCAGTCAGTGTGCTCTGTACCCCACATCCTCACACCCTCCCACAGGAAGAAGGGTGCTGGAGGTGCTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000153257.2
3UTR CCA 72 bp CAGCTGTTGTCAGCACCTCCAGCACCCTTCTTCCTGTaGGAGGGTGTGAGGATGTGGGGTACAGAGCACACT +
Preference number: 3 (lower is better)
Translates to: QLLSAPPAPFFL*EGVRMWGTEHT
Trigger: AGTGTGCTCTGTACCCCACATCCTCACACCCTCCCACAGGAAGAAGGGTGCTGGAGGTGCTGACAACAGCTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000153257.2
3UTR CCA 72 bp CCACCTCCAACGCAGAGCACCTCGGGAGCTGTAGTTTaGGATGTAGTCAACTTCCTGGGAAGGTCCGGAAGT +
Preference number: 3 (lower is better)
Translates to: PPPTQSTSGAVV*DVVNFLGRSGS
Trigger: ACTTCCGGACCTTCCCAGGAAGTTGACTACATCCCAAACTACAGCTCCCGAGGTGCTCTGCGTTGGAGGTGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000183310.2
3UTR TCA 72 bp GTGGGAGGGTGTGAGGATGTGGGGTACAGAGCACACTaGCTGCAGACAGACATGACAGTGATCACCATCATG +
Preference number: 3 (lower is better)
Translates to: VGGCEDVGYRAH*LQTDMTVITIM
Trigger: CATGATGGTGATCACTGTCATGTCTGTCTGCAGTCAGTGTGCTCTGTACCCCACATCCTCACACCCTCCCAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000153257.2
3UTR TCA 72 bp GGGCGTAGAGGAATGATCGACTTGCAGAATGCCGCATaGGCTTATGCAACAAAGGCCACCCTCGTTTCCGGT +
Preference number: 3 (lower is better)
Translates to: GRRGMIDLQNAA*AYATKATLVSG
Trigger: ACCGGAAACGAGGGTGGCCTTTGTTGCATAAGCTCATGCGGCATTCTGCAAGTCGATCATTCCTCTACGCCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000183310.2
3UTR GCA 72 bp CTCAGGACATCACCCAAGCCACAACTTTGGGCCCATTaGGCAATCCCTACTCTTCCACAGAGGCTTAGGTTT +
Preference number: 3 (lower is better)
Translates to: LRTSPKPQLWAH*AIPTLPQRLRF
Trigger: AAACCTAAGCCTCTGTGGAAGAGTAGGGATTGCGCAATGGGCCCAAAGTTGTGGCTTGGGTGATGTCCTGAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000183310.2
3UTR-3UTR CAA 90 bp ACTCTTCCACAGAGGCTTAGGTTTCACTCTAGACGCAGAGCGGTCCTTCCCGTACTCGGGAGCTGTAGTTaGGGATGTAGTCAACTTCCT +
Preference number: 3 (lower is better)
Translates to: TLPQRLRFHSRRRAVLPVLGSCS*GCSQLP
Trigger: AGGAAGTTGACTACATCCCAAACTACAGCTCCCGAG...TACGGGAAGGACCGCTCTGCGTCTAGAGTGAAACCTAAGCCTCTGTGGAAGAGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000183310.2
3UTR-3UTR CAA 90 bp GACCATCATAGGGATGGATACTGTCCCCTGACAGAGAAAGGAGTGAGGGGCACTACACTATTTCCAGGGTaGGGAAAGATGGTGAGAAGC +
Preference number: 3 (lower is better)
Translates to: DHHRDGYCPLTEKGVRGTTLFPG*GKMVRS
Trigger: GCTTCTCACCATCTTTCCCAACCCTGGAAATAGTGT...AGTGCCCCTCACTCCTTTCTCTGTCAGGGGACAGTATCCATCCCTATGATGGTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000183310.2
CDS-3UTR TCA 90 bp CGGCTGAGCTTGCTGGGAGCGGAAGCCCACCTCCAACGCAGAGCACCTCGGGAGTCCAGAAAGCGATGGTaGTCCCGGGGCCGGGTACCC +
Preference number: 4 (lower is better)
Translates to: RLSLLGAEAHLQRRAPRESRKRW*SRGRVP
Trigger: GGGTACCCGGCCCCGGGATCACCATCGCTTTCTGGA...CTCCCGAGGTGCTCTGCGTTGGAGGTGGGCTTCCGCTCCCAGCAAGCTCAGCCG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000183310.2
CDS-3UTR GCA 90 bp CGGCTGAGCTTGCTGGGAGCGGAAGCCCACCTCCAACGCAGAGCACCTCGGGAGGAAAAGGGTGCAGCCTaGCCACGTACCACCAGTCCT +
Preference number: 4 (lower is better)
Translates to: RLSLLGAEAHLQRRAPREEKGAA*PRTTSP
Trigger: AGGACTGGTGGTACGTGGGCAGGCTGCACCCTTTTC...CTCCCGAGGTGCTCTGCGTTGGAGGTGGGCTTCCGCTCCCAGCAAGCTCAGCCG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000183310.2
CDS-3UTR CCA 90 bp CGGCTGAGCTTGCTGGGAGCGGAAGCCCACCTCCAACGCAGAGCACCTCGGGAGGCCAACAAGCACCGGTaGGCAAATACCTCTTGCCGT +
Preference number: 4 (lower is better)
Translates to: RLSLLGAEAHLQRRAPREANKHR*ANTSCR
Trigger: ACGGCAAGAGGTATTTGCCCACCGGTGCTTGTTGGC...CTCCCGAGGTGCTCTGCGTTGGAGGTGGGCTTCCGCTCCCAGCAAGCTCAGCCG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000183310.2
CDS-3UTR GCA 90 bp CCACCTCCAACGCAGAGCACCTCGGGAGCTGTAGTTTGGGATGTAGTCAACTTCTCGGACCACTGGAGCTaGCACCTCAGCCACGGGTTG +
Preference number: 4 (lower is better)
Translates to: PPPTQSTSGAVVWDVVNFSDHWS*HLSHGL
Trigger: CAACCCGTGGCTGAGGTGGCAGCTCCAGTGGTCCGA...GAAGTTGACTACATCCCAAACTACAGCTCCCGAGGTGCTCTGCGTTGGAGGTGG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000183310.2
CDS-3UTR GCA 90 bp CCACCTCCAACGCAGAGCACCTCGGGAGCTGTAGTTTGGGATGTAGTCAACTTCGGTTCCCGTCGGTTCTaGTCTTCCAGGGCGCTTAGC +
Preference number: 4 (lower is better)
Translates to: PPPTQSTSGAVVWDVVNFGSRRF*SSRALS
Trigger: GCTAAGCGCCCTGGAAGAGCAGAACCGACGGGAACC...GAAGTTGACTACATCCCAAACTACAGCTCCCGAGGTGCTCTGCGTTGGAGGTGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000183310.2
CDS-3UTR GCA 90 bp GAGCCTCACAGACCAGCTCCACATCCAACACCTTCACCACAAACTCCAGGCAGAGAAAAGGGTGCAGCCTaGCCACGTACCACCAGTCCT +
Preference number: 4 (lower is better)
Translates to: EPHRPAPHPTPSPQTPGREKGAA*PRTTSP
Trigger: AGGACTGGTGGTACGTGGGCAGGCTGCACCCTTTTC...TCTGCCTGGAGTTTGTGGTGAAGGTGTTGGATGTGGAGCTGGTCTGTGAGGCTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000143213.9
ENSMUST00000153257.2
CDS-3UTR GCA 90 bp GACCATCATAGGGATGGATACTGTCCCCTGACAGAGAAAGGAGTGAGGGGCACTCGCAGAGCTTGTCACTaGGTAGCACAGGCAGCAGCG +
Preference number: 4 (lower is better)
Translates to: DHHRDGYCPLTEKGVRGTRRACH*VAQAAA
Trigger: CGCTGCTGCCTGTGCTACGCAGTGACAAGCTCTGCG...AGTGCCCCTCACTCCTTTCTCTGTCAGGGGACAGTATCCATCCCTATGATGGTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000183310.2
CDS-3UTR CCA 90 bp CATTGCGCAATCCCTACTCTTCCACAGAGGCTTAGGTTTCACTCTAGACGCAGACAGGCAGCAGCGCGGTaGCGGACAGCTCCAGAAAGC +
Preference number: 4 (lower is better)
Translates to: HCAIPTLPQRLRFHSRRRQAAAR*RTAPES
Trigger: GCTTTCTGGAGCTGTCCGCCACCGCGCTGCTGCCTG...TCTGCGTCTAGAGTGAAACCTAAGCCTCTGTGGAAGAGTAGGGATTGCGCAATG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000183310.2
CDS-3UTR GCA 90 bp CTCCACATCCAACACCTTCACCACAAACTCCAGGCAGAGCTCTCGAAGTTCCTCGAAAAGGGTGCAGCCTaGCCACGTACCACCAGTCCT +
Preference number: 4 (lower is better)
Translates to: LHIQHLHHKLQAELSKFLEKGAA*PRTTSP
Trigger: AGGACTGGTGGTACGTGGGCAGGCTGCACCCTTTTC...GAGGAACTTCGAGAGCTCTGCCTGGAGTTTGTGGTGAAGGTGTTGGATGTGGAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000143213.9
ENSMUST00000153257.2
CDS-3UTR GCA 90 bp AAGGCTATGCACCGCTCCTGTAGTGACCCCAGGCCAAAGGTTACAGCAACCTGCGATGAGGCTTCGAAGTaGTGTGGAAAAGGGTGCAGC +
Preference number: 4 (lower is better)
Translates to: KAMHRSCSDPRPKVTATCDEASK*CGKGCS
Trigger: GCTGCACCCTTTTCCACAGCACTTCGAAGCCTCATC...GCAGGTTGCTGTAACCTTTGGCCTGGGGTCACTACAGGAGCGGTGCATAGCCTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000143213.9
CDS-3UTR GCA 90 bp CCAGGCCAAAGGTTACAGCAACCTGCAGAGCCTCACAGACCAGCTCCACATCCAGATGAGGCTTCGAAGTaGTGTGGAAAAGGGTGCAGC +
Preference number: 4 (lower is better)
Translates to: PGQRLQQPAEPHRPAPHPDEASK*CGKGCS
Trigger: GCTGCACCCTTTTCCACAGCACTTCGAAGCCTCATC...TGGATGTGGAGCTGGTCTGTGAGGCTCTGCAGGTTGCTGTAACCTTTGGCCTGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000143213.9
ENSMUST00000153257.2
CDS-3UTR CCA 90 bp ACTCTTCCACAGAGGCTTAGGTTTCACTCTAGACGCAGAGCGGTCCTTCCCGTACAGCTTCGGGCTGCCTaGACTAGCTCAGTCTCATCC +
Preference number: 4 (lower is better)
Translates to: TLPQRLRFHSRRRAVLPVQLRAA*TSSVSS
Trigger: GGATGAGACTGAGCTAGTCCAGGCAGCCCGAAGCTG...TACGGGAAGGACCGCTCTGCGTCTAGAGTGAAACCTAAGCCTCTGTGGAAGAGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000183310.2
CDS-3UTR GCA 90 bp CATTGCGCAATCCCTACTCTTCCACAGAGGCTTAGGTTTCACTCTAGACGCAGAAGCACAGAGTGTTGGTaGAGCTTGACACTGTTGGTG +
Preference number: 4 (lower is better)
Translates to: HCAIPTLPQRLRFHSRRRSTECW*SLTLLV
Trigger: CACCAACAGTGTCAAGCTGCACCAACACTCTGTGCT...TCTGCGTCTAGAGTGAAACCTAAGCCTCTGTGGAAGAGTAGGGATTGCGCAATG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000183310.2
CDS-3UTR CCA 90 bp AGCCACAACTTTGGGCCCATTGCGCAATCCCTACTCTTCCACAGAGGCTTAGGTGGGCCCAAAAGTCTCTaGAAGAAGTTACATCTACAG +
Preference number: 4 (lower is better)
Translates to: SHNFGPIAQSLLFHRGLGGPKSL*KKLHLQ
Trigger: CTGTAGATGTAACTTCTTCCAGAGACTTTTGGGCCC...ACCTAAGCCTCTGTGGAAGAGTAGGGATTGCGCAATGGGCCCAAAGTTGTGGCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000183310.2
CDS-3UTR CCA 90 bp CATTGCGCAATCCCTACTCTTCCACAGAGGCTTAGGTTTCACTCTAGACGCAGATCCAGCACAGAGTGTTaGTGCAGCTTGACACTGTTG +
Preference number: 4 (lower is better)
Translates to: HCAIPTLPQRLRFHSRRRSSTEC*CSLTLL
Trigger: CAACAGTGTCAAGCTGCACCAACACTCTGTGCTGGA...TCTGCGTCTAGAGTGAAACCTAAGCCTCTGTGGAAGAGTAGGGATTGCGCAATG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000183310.2
CDS CCA 90 bp CATCCACGCAGAGCTTGTCACTGCGTAGCACAGGCAGCAGCGCGGTaGCGGACAGCTCCAGAAAGCCACGGGTGCGGAGCGCCTCCTGGC +
Preference number: 5 (lower is better)
Translates to: HPRRACHCVAQAAAR*RTAPESHGCGAPPG
Trigger: GCCAGGAGGCGCTCCGCACCCGTGGCTTTCTGGAGCTGTCCGCCACCGCGCTGCTGCCTGTGCTACGCAGTGACAAGCTCTGCGTGGATG
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000183310.2
CDS TCA 90 bp CGGCGGCACGGCGCGCTCCGGGCCGCATCTCCTCTCCGTAGGGCGTaGCACTTCCATGCCTCCACAATCTGTTCAACCGGGATGAGCGGT +
Preference number: 5 (lower is better)
Translates to: RRHGALRAASPLRRA*HFHASTICSTGMSG
Trigger: ACCGCTCATCCCGGTTGAACAGATTGTGGAGGCATGGAAGTGTCACGCCCTACGGAGAGGAGATGCGGCCCGGAGCGCGCCGTGCCGCCG
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000183310.2
CDS CCA 90 bp TGCTCTAACACCGCGGCGCCCACGCGTGCCCAGCTTCGGGCTGCCTaGACTAGCTCAGTCTCATCCACGCAGAGCTTGTCACTGCGTAGC +
Preference number: 5 (lower is better)
Translates to: CSNTAAPTRAQLRAA*TSSVSSTQSLSLRS
Trigger: GCTACGCAGTGACAAGCTCTGCGTGGATGAGACTGAGCTAGTCCAGGCAGCCCGAAGCTGGGCACGCGTGGGCGCCGCGGTGTTAGAGCA
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000183310.2
CDS GCA 90 bp GGGCTGCCTGGACTAGCTCAGTCTCATCCACGCAGAGCTTGTCACTaGGTAGCACAGGCAGCAGCGCGGTGGCGGACAGCTCCAGAAAGC +
Preference number: 5 (lower is better)
Translates to: GLPGLAQSHPRRACH*VAQAAARWRTAPES
Trigger: GCTTTCTGGAGCTGTCCGCCACCGCGCTGCTGCCTGTGCTACGCAGTGACAAGCTCTGCGTGGATGAGACTGAGCTAGTCCAGGCAGCCC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000183310.2
CDS TCA 90 bp GCGGACAGCTCCAGAAAGCCACGGGTGCGGAGCGCCTCCTGGCTGTaGGCTTCTATAAAGGCTATGCACCGCTCCTGTAGTGACCCCAGG +
Preference number: 5 (lower is better)
Translates to: ADSSRKPRVRSASWL*ASIKAMHRSCSDPR
Trigger: CCTGGGGTCACTACAGGAGCGGTGCATAGCCTTTATAGAAGCTCACAGCCAGGAGGCGCTCCGCACCCGTGGCTTTCTGGAGCTGTCCGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000183310.2
CDS GCA 90 bp GCCTCCACAATCTGTTCAACCGGGATGAGCGGTTCCCGTCGGTTCTaGTCTTCCAGGGCGCTTAGCTCCGCCGGGGCAAGCAAAGCCAGT +
Preference number: 5 (lower is better)
Translates to: ASTICSTGMSGSRRF*SSRALSSAGASKAS
Trigger: ACTGGCTTTGCTTGCCCCGGCGGAGCTAAGCGCCCTGGAAGAGCAGAACCGACGGGAACCGCTCATCCCGGTTGAACAGATTGTGGAGGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000183310.2
CDS-3UTR CAA 90 bp CGGCTGAGCTTGCTGGGAGCGGAAGCCCACCTCCAACGCAGAGCACCTCGGGAGGTGGGCAAATACCTCTaGCCGTTCTTGACCAACCAC +
Preference number: 5 (lower is better)
Translates to: RLSLLGAEAHLQRRAPREVGKYL*PFLTNH
Trigger: GTGGTTGGTCAAGAACGGCAAGAGGTATTTGCCCAC...CTCCCGAGGTGCTCTGCGTTGGAGGTGGGCTTCCGCTCCCAGCAAGCTCAGCCG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000183310.2
CDS GCA 90 bp GCACCTCCAGCACCTGTACTGGGGGTTGTTGATGAGGCTTCGAAGTaGTGTGGAAAAGGGTGCAGCCTGCCCACGTACCACCAGTCCTGG +
Preference number: 5 (lower is better)
Translates to: APPAPVLGVVDEASK*CGKGCSLPTYHQSW
Trigger: CCAGGACTGGTGGTACGTGGGCAGGCTGCACCCTTTTCCACAGCACTTCGAAGCCTCATCAACAACCCCCAGTACAGGTGCTGGAGGTGC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000143213.9
CDS GCA 90 bp AGACTGTGGCACCCTGTACTGGGGGTTGTTGATGAGGCTTCGAAGTaGTGTGGAAAAGGGTGCAGCCTGCCCACGTACCACCAGTCCTGG +
Preference number: 5 (lower is better)
Translates to: RLWHPVLGVVDEASK*CGKGCSLPTYHQSW
Trigger: CCAGGACTGGTGGTACGTGGGCAGGCTGCACCCTTTTCCACAGCACTTCGAAGCCTCATCAACAACCCCCAGTACAGGGTGCCACAGTCT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000153257.2
CDS-3UTR CAA 90 bp CTTTGGGCCCATTGCGCAATCCCTACTCTTCCACAGAGGCTTAGGTTTCACTCTTCATCCACGCAGAGCTaGTCACTGCGTAGCACAGGC +
Preference number: 5 (lower is better)
Translates to: LWAHCAIPTLPQRLRFHSSSTQS*SLRSTG
Trigger: GCCTGTGCTACGCAGTGACAAGCTCTGCGTGGATGA...AGAGTGAAACCTAAGCCTCTGTGGAAGAGTAGGGATTGCGCAATGGGCCCAAAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000183310.2
CDS GCA 90 bp AAAGCAAATATCACTGTACTGGGGGTTGTTGATGAGGCTTCGAAGTaGTGTGGAAAAGGGTGCAGCCTGCCCACGTACCACCAGTCCTGG +
Preference number: 5 (lower is better)
Translates to: KANITVLGVVDEASK*CGKGCSLPTYHQSW
Trigger: CCAGGACTGGTGGTACGTGGGCAGGCTGCACCCTTTTCCACAGCACTTCGAAGCCTCATCAACAACCCCCAGTACAGTGATATTTGCTTT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000183310.2
CDS CCA 90 bp GTGCTTAGCACCACAGGACTAGGTACCCCAGGGCCCAAAAGTCTCTaGAAGAAGTTACATCTACAGGCCAACAAGCACCGGTGGGCAAAT +
Preference number: 5 (lower is better)
Translates to: VLSTTGLGTPGPKSL*KKLHLQANKHRWAN
Trigger: ATTTGCCCACCGGTGCTTGTTGGCCTGTAGATGTAACTTCTTCCAGAGACTTTTGGGCCCTGGGGTACCTAGTCCTGTGGTGCTAAGCAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000183310.2
CDS-3UTR CAA 90 bp GAGCTTATGCAACAAAGGCCACCCTCGTTTCCGGTCTCAGGACATCACCCAAGCTGCAGCTTGACACTGTaGGTGTATAGGAACTCCAGC +
Preference number: 5 (lower is better)
Translates to: ELMQQRPPSFPVSGHHPSCSLTL*VYRNSS
Trigger: GCTGGAGTTCCTATACACCAACAGTGTCAAGCTGCA...GCTTGGGTGATGTCCTGAGACCGGAAACGAGGGTGGCCTTTGTTGCATAAGCTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000183310.2
CDS-3UTR CAA 90 bp GCTTATGCAACAAAGGCCACCCTCGTTTCCGGTCTCAGGACATCACCCAAGCCAGAGTGTTGGTGCAGCTaGACACTGTTGGTGTATAGG +
Preference number: 5 (lower is better)
Translates to: AYATKATLVSGLRTSPKPECWCS*TLLVYR
Trigger: CCTATACACCAACAGTGTCAAGCTGCACCAACACTC...TGGCTTGGGTGATGTCCTGAGACCGGAAACGAGGGTGGCCTTTGTTGCATAAGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000183310.2
CDS TCA 90 bp CCACAGCTGTTGTCAGCACCTCCAGCACAGAGTGTTGGTGCAGCTTaGCACTGTTGGTGTATAGGAACTCCAGCACAGCTAAGAAGGCTT +
Preference number: 5 (lower is better)
Translates to: PQLLSAPPAQSVGAA*HCWCIGTPAQLRRL
Trigger: AAGCCTTCTTAGCTGTGCTGGAGTTCCTATACACCAACAGTGTCAAGCTGCACCAACACTCTGTGCTGGAGGTGCTGACAACAGCTGTGG
52% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000183310.2
CDS CCA 90 bp AGCCCATATTCCACAGCTGTTGTCAGCACCTCCAGCACAGAGTGTTaGTGCAGCTTGACACTGTTGGTGTATAGGAACTCCAGCACAGCT +
Preference number: 5 (lower is better)
Translates to: SPYSTAVVSTSSTEC*CSLTLLVYRNSSTA
Trigger: AGCTGTGCTGGAGTTCCTATACACCAACAGTGTCAAGCTGCACCAACACTCTGTGCTGGAGGTGCTGACAACAGCTGTGGAATATGGGCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000183310.2
CDS-3UTR CAA 90 bp CCTAGAAGGGAGAAAAGGCATGAGGTAGGCAAGAATGAGGTCCGGGTTCCAGATCTCCAGCACAGAGTGTaGGTGCAGCTTGACACTGTT +
Preference number: 5 (lower is better)
Translates to: PRREKRHEVGKNEVRVPDLQHRV*VQLDTV
Trigger: AACAGTGTCAAGCTGCACCAACACTCTGTGCTGGAG...ATCTGGAACCCGGACCTCATTCTTGCCTACCTCATGCCTTTTCTCCCTTCTAGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000183310.2
CDS-3UTR CAA 90 bp CTTTGGGCCCATTGCGCAATCCCTACTCTTCCACAGAGGCTTAGGTTTCACTCTCATATTCCACAGCTGTaGTCAGCACCTCCAGCACAG +
Preference number: 5 (lower is better)
Translates to: LWAHCAIPTLPQRLRFHSHIPQL*SAPPAQ
Trigger: CTGTGCTGGAGGTGCTGACAACAGCTGTGGAATATG...AGAGTGAAACCTAAGCCTCTGTGGAAGAGTAGGGATTGCGCAATGGGCCCAAAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000183310.2
CDS GCA 90 bp CCATATTCCACAGCTGTTGTCAGCACCTCCAGCACAGAGTGTTGGTaGAGCTTGACACTGTTGGTGTATAGGAACTCCAGCACAGCTAAG +
Preference number: 5 (lower is better)
Translates to: PYSTAVVSTSSTECW*SLTLLVYRNSSTAK
Trigger: CTTAGCTGTGCTGGAGTTCCTATACACCAACAGTGTCAAGCTGCACCAACACTCTGTGCTGGAGGTGCTGACAACAGCTGTGGAATATGG
51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000183310.2
CDS TCA 90 bp CTACAGGCCAACAAGCACCGGTGGGCAAATACCTCTTGCCGTTCTTaGCCAACCACAAAGCAAATATCACTGTACTGGGGGTTGTTGATG +
Preference number: 5 (lower is better)
Translates to: LQANKHRWANTSCRS*PTTKQISLYWGLLM
Trigger: CATCAACAACCCCCAGTACAGTGATATTTGCTTTGTGGTTGGTCAAGAACGGCAAGAGGTATTTGCCCACCGGTGCTTGTTGGCCTGTAG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000183310.2
CDS-3UTR CAA 90 bp CATTGCGCAATCCCTACTCTTCCACAGAGGCTTAGGTTTCACTCTAGACGCAGATACCTCTTGCCGTTCTaGACCAACCACAAAGCAAAT +
Preference number: 5 (lower is better)
Translates to: HCAIPTLPQRLRFHSRRRYLLPF*TNHKAN
Trigger: ATTTGCTTTGTGGTTGGTCAAGAACGGCAAGAGGTA...TCTGCGTCTAGAGTGAAACCTAAGCCTCTGTGGAAGAGTAGGGATTGCGCAATG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000183310.2
CDS CCA 72 bp AGAGCTTGTCACTGCGTAGCACAGGCAGCAGCGCGGTaGCGGACAGCTCCAGAAAGCCACGGGTGCGGAGCG +
Preference number: 6 (lower is better)
Translates to: RACHCVAQAAAR*RTAPESHGCGA
Trigger: CGCTCCGCACCCGTGGCTTTCTGGAGCTGTCCGCCACCGCGCTGCTGCCTGTGCTACGCAGTGACAAGCTCT
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000183310.2
CDS TCA 72 bp GGCGCGCTCCGGGCCGCATCTCCTCTCCGTAGGGCGTaGCACTTCCATGCCTCCACAATCTGTTCAACCGGG +
Preference number: 6 (lower is better)
Translates to: GALRAASPLRRA*HFHASTICSTG
Trigger: CCCGGTTGAACAGATTGTGGAGGCATGGAAGTGTCACGCCCTACGGAGAGGAGATGCGGCCCGGAGCGCGCC
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000183310.2
CDS CAA 90 bp CAGCTTCGGGCTGCCTGGACTAGCTCAGTCTCATCCACGCAGAGCTaGTCACTGCGTAGCACAGGCAGCAGCGCGGTGGCGGACAGCTCC +
Preference number: 6 (lower is better)
Translates to: QLRAAWTSSVSSTQS*SLRSTGSSAVADSS
Trigger: GGAGCTGTCCGCCACCGCGCTGCTGCCTGTGCTACGCAGTGACAAGCTCTGCGTGGATGAGACTGAGCTAGTCCAGGCAGCCCGAAGCTG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000183310.2
CDS GCA 72 bp ATCTGTTCAACCGGGATGAGCGGTTCCCGTCGGTTCTaGTCTTCCAGGGCGCTTAGCTCCGCCGGGGCAAGC +
Preference number: 6 (lower is better)
Translates to: ICSTGMSGSRRF*SSRALSSAGAS
Trigger: GCTTGCCCCGGCGGAGCTAAGCGCCCTGGAAGAGCAGAACCGACGGGAACCGCTCATCCCGGTTGAACAGAT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000183310.2
CDS CAA 72 bp GCTGCCTGGACTAGCTCAGTCTCATCCACGCAGAGCTaGTCACTGCGTAGCACAGGCAGCAGCGCGGTGGCG +
Preference number: 6 (lower is better)
Translates to: AAWTSSVSSTQS*SLRSTGSSAVA
Trigger: CGCCACCGCGCTGCTGCCTGTGCTACGCAGTGACAAGCTCTGCGTGGATGAGACTGAGCTAGTCCAGGCAGC
64% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000183310.2
CDS GCA 72 bp GCACCTGTACTGGGGGTTGTTGATGAGGCTTCGAAGTaGTGTGGAAAAGGGTGCAGCCTGCCCACGTACCAC +
Preference number: 6 (lower is better)
Translates to: APVLGVVDEASK*CGKGCSLPTYH
Trigger: GTGGTACGTGGGCAGGCTGCACCCTTTTCCACAGCACTTCGAAGCCTCATCAACAACCCCCAGTACAGGTGC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000143213.9
CDS GCA 72 bp CACCCTGTACTGGGGGTTGTTGATGAGGCTTCGAAGTaGTGTGGAAAAGGGTGCAGCCTGCCCACGTACCAC +
Preference number: 6 (lower is better)
Translates to: HPVLGVVDEASK*CGKGCSLPTYH
Trigger: GTGGTACGTGGGCAGGCTGCACCCTTTTCCACAGCACTTCGAAGCCTCATCAACAACCCCCAGTACAGGGTG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000153257.2
CDS GCA 72 bp GTTGTTGATGAGGCTTCGAAGTGCTGTGGAAAAGGGTaGAGCCTGCCCACGTACCACCAGTCCTGGGTTCTC +
Preference number: 6 (lower is better)
Translates to: VVDEASKCCGKG*SLPTYHQSWVL
Trigger: GAGAACCCAGGACTGGTGGTACGTGGGCAGGCTGCACCCTTTTCCACAGCACTTCGAAGCCTCATCAACAAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000143213.9
ENSMUST00000153257.2
ENSMUST00000183310.2
CDS CCA 72 bp GCTCCACTCTTCAGGCCAGACTGTGGCACCCTGTACTaGGGGTTGTTGATGAGGCTTCGAAGTGCTGTGGAA +
Preference number: 6 (lower is better)
Translates to: APLFRPDCGTLY*GLLMRLRSAVE
Trigger: TTCCACAGCACTTCGAAGCCTCATCAACAACCCCCAGTACAGGGTGCCACAGTCTGGCCTGAAGAGTGGAGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000153257.2
CDS GCA 72 bp ATCACTGTACTGGGGGTTGTTGATGAGGCTTCGAAGTaGTGTGGAAAAGGGTGCAGCCTGCCCACGTACCAC +
Preference number: 6 (lower is better)
Translates to: ITVLGVVDEASK*CGKGCSLPTYH
Trigger: GTGGTACGTGGGCAGGCTGCACCCTTTTCCACAGCACTTCGAAGCCTCATCAACAACCCCCAGTACAGTGAT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000183310.2
CDS CAA 72 bp TTCAGGCCAGACTGTGGCACCCTGTACTGGGGGTTGTaGATGAGGCTTCGAAGTGCTGTGGAAAAGGGTGCA +
Preference number: 6 (lower is better)
Translates to: FRPDCGTLYWGL*MRLRSAVEKGA
Trigger: TGCACCCTTTTCCACAGCACTTCGAAGCCTCATCAACAACCCCCAGTACAGGGTGCCACAGTCTGGCCTGAA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000153257.2
CDS CAA 90 bp GTTGTCAGCACCTCCAGCACAGAGTGTTGGTGCAGCTTGACACTGTaGGTGTATAGGAACTCCAGCACAGCTAAGAAGGCTTCGGCAGGC +
Preference number: 6 (lower is better)
Translates to: VVSTSSTECWCSLTL*VYRNSSTAKKASAG
Trigger: GCCTGCCGAAGCCTTCTTAGCTGTGCTGGAGTTCCTATACACCAACAGTGTCAAGCTGCACCAACACTCTGTGCTGGAGGTGCTGACAAC
54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000183310.2
CDS CCA 72 bp ACCACAGGACTAGGTACCCCAGGGCCCAAAAGTCTCTaGAAGAAGTTACATCTACAGGCCAACAAGCACCGG +
Preference number: 6 (lower is better)
Translates to: TTGLGTPGPKSL*KKLHLQANKHR
Trigger: CCGGTGCTTGTTGGCCTGTAGATGTAACTTCTTCCAGAGACTTTTGGGCCCTGGGGTACCTAGTCCTGTGGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000183310.2
CDS GCA 72 bp ACAGCTGTTGTCAGCACCTCCAGCACAGAGTGTTGGTaGAGCTTGACACTGTTGGTGTATAGGAACTCCAGC +
Preference number: 6 (lower is better)
Translates to: TAVVSTSSTECW*SLTLLVYRNSS
Trigger: GCTGGAGTTCCTATACACCAACAGTGTCAAGCTGCACCAACACTCTGTGCTGGAGGTGCTGACAACAGCTGT
53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000183310.2
CDS CCA 72 bp TCCACAGCTGTTGTCAGCACCTCCAGCACAGAGTGTTaGTGCAGCTTGACACTGTTGGTGTATAGGAACTCC +
Preference number: 6 (lower is better)
Translates to: STAVVSTSSTEC*CSLTLLVYRNS
Trigger: GGAGTTCCTATACACCAACAGTGTCAAGCTGCACCAACACTCTGTGCTGGAGGTGCTGACAACAGCTGTGGA
53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000183310.2
CDS CAA 72 bp GTTGTCAGCACCTCCAGCACAGAGTGTTGGTGCAGCTaGACACTGTTGGTGTATAGGAACTCCAGCACAGCT +
Preference number: 6 (lower is better)
Translates to: VVSTSSTECWCS*TLLVYRNSSTA
Trigger: AGCTGTGCTGGAGTTCCTATACACCAACAGTGTCAAGCTGCACCAACACTCTGTGCTGGAGGTGCTGACAAC
53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000183310.2
CDS CAA 90 bp TCCACAGCTGTTGTCAGCACCTCCAGCACAGAGTGTTGGTGCAGCTaGACACTGTTGGTGTATAGGAACTCCAGCACAGCTAAGAAGGCT +
Preference number: 6 (lower is better)
Translates to: STAVVSTSSTECWCS*TLLVYRNSSTAKKA
Trigger: AGCCTTCTTAGCTGTGCTGGAGTTCCTATACACCAACAGTGTCAAGCTGCACCAACACTCTGTGCTGGAGGTGCTGACAACAGCTGTGGA
52% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000183310.2
CDS TCA 72 bp TTGTCAGCACCTCCAGCACAGAGTGTTGGTGCAGCTTaGCACTGTTGGTGTATAGGAACTCCAGCACAGCTA +
Preference number: 6 (lower is better)
Translates to: LSAPPAQSVGAA*HCWCIGTPAQL
Trigger: TAGCTGTGCTGGAGTTCCTATACACCAACAGTGTCAAGCTGCACCAACACTCTGTGCTGGAGGTGCTGACAA
51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000183310.2
CDS CAA 72 bp ACCTCCAGCACAGAGTGTTGGTGCAGCTTGACACTGTaGGTGTATAGGAACTCCAGCACAGCTAAGAAGGCT +
Preference number: 6 (lower is better)
Translates to: TSSTECWCSLTL*VYRNSSTAKKA
Trigger: AGCCTTCTTAGCTGTGCTGGAGTTCCTATACACCAACAGTGTCAAGCTGCACCAACACTCTGTGCTGGAGGT
51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000183310.2
CDS TCA 72 bp AACAAGCACCGGTGGGCAAATACCTCTTGCCGTTCTTaGCCAACCACAAAGCAAATATCACTGTACTGGGGG +
Preference number: 6 (lower is better)
Translates to: NKHRWANTSCRS*PTTKQISLYWG
Trigger: CCCCCAGTACAGTGATATTTGCTTTGTGGTTGGTCAAGAACGGCAAGAGGTATTTGCCCACCGGTGCTTGTT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000183310.2
CDS CAA 72 bp CAACAAGCACCGGTGGGCAAATACCTCTTGCCGTTCTaGACCAACCACAAAGCAAATATCACTGTACTGGGG +
Preference number: 6 (lower is better)
Translates to: QQAPVGKYLLPF*TNHKANITVLG
Trigger: CCCCAGTACAGTGATATTTGCTTTGTGGTTGGTCAAGAACGGCAAGAGGTATTTGCCCACCGGTGCTTGTTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000183310.2
CDS CAA 90 bp TCTACAGGCCAACAAGCACCGGTGGGCAAATACCTCTTGCCGTTCTaGACCAACCACAAAGCAAATATCACTGTACTGGGGGTTGTTGAT +
Preference number: 6 (lower is better)
Translates to: STGQQAPVGKYLLPF*TNHKANITVLGVVD
Trigger: ATCAACAACCCCCAGTACAGTGATATTTGCTTTGTGGTTGGTCAAGAACGGCAAGAGGTATTTGCCCACCGGTGCTTGTTGGCCTGTAGA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000183310.2
CDS CAA 90 bp GAAGTTACATCTACAGGCCAACAAGCACCGGTGGGCAAATACCTCTaGCCGTTCTTGACCAACCACAAAGCAAATATCACTGTACTGGGG +
Preference number: 6 (lower is better)
Translates to: EVTSTGQQAPVGKYL*PFLTNHKANITVLG
Trigger: CCCCAGTACAGTGATATTTGCTTTGTGGTTGGTCAAGAACGGCAAGAGGTATTTGCCCACCGGTGCTTGTTGGCCTGTAGATGTAACTTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000183310.2
CDS CAA 72 bp CCAACCACAAAGCAAATATCACTGTACTGGGGGTTGTaGATGAGGCTTCGAAGTGCTGTGGAAAAGGGTGCA +
Preference number: 6 (lower is better)
Translates to: PTTKQISLYWGL*MRLRSAVEKGA
Trigger: TGCACCCTTTTCCACAGCACTTCGAAGCCTCATCAACAACCCCCAGTACAGTGATATTTGCTTTGTGGTTGG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000183310.2
CDS CAA 72 bp TCTACAGGCCAACAAGCACCGGTGGGCAAATACCTCTaGCCGTTCTTGACCAACCACAAAGCAAATATCACT +
Preference number: 6 (lower is better)
Translates to: STGQQAPVGKYL*PFLTNHKANIT
Trigger: AGTGATATTTGCTTTGTGGTTGGTCAAGAACGGCAAGAGGTATTTGCCCACCGGTGCTTGTTGGCCTGTAGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000183310.2