RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for BTBD11 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000020042

Ensembl transcript IDs: ENSMUST00000020231.10, ENSMUST00000105306.3, ENSMUST00000105307.8

Found 348 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp CTAGATCATGGTCCTTGGCAGCAGGTGCCCATGGCTCCGGGGCACTaGAGGGGGCTTGGTTGCTGTGAGTTGGCCTGCAGGTTCTGGCCT +
Preference number: 1 (lower is better)
Translates to: LDHGPWQQVPMAPGH*RGLGCCELACRFWP
Trigger: AGGCCAGAACCTGCAGGCCAACTCACAGCAACCAAGCCCCCTCCAGTGCCCCGGAGCCATGGGCACCTGCTGCCAAGGACCATGATCTAG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000105306.3
ENSMUST00000105307.8
3UTR GCA 90 bp TGGCAGCAGGTGCCCATGGCTCCGGGGCACTGGAGGGGGCTTGGTTaGTGTGAGTTGGCCTGCAGGTTCTGGCCTCTGCTACAATCTAAC +
Preference number: 1 (lower is better)
Translates to: WQQVPMAPGHWRGLG*CELACRFWPLLQSN
Trigger: GTTAGATTGTAGCAGAGGCCAGAACCTGCAGGCCAACTCACAGCAACCAAGCCCCCTCCAGTGCCCCGGAGCCATGGGCACCTGCTGCCA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000105306.3
ENSMUST00000105307.8
3UTR CCA 90 bp ACCAGGAAGCAGAGATCTCTAAGCCTTGGTCCGTCTGCTAGATCATaGTCCTTGGCAGCAGGTGCCCATGGCTCCGGGGCACTGGAGGGG +
Preference number: 1 (lower is better)
Translates to: TRKQRSLSLGPSARS*SLAAGAHGSGALEG
Trigger: CCCCTCCAGTGCCCCGGAGCCATGGGCACCTGCTGCCAAGGACCATGATCTAGCAGACGGACCAAGGCTTAGAGATCTCTGCTTCCTGGT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000105306.3
ENSMUST00000105307.8
3UTR GCA 90 bp GGAGGGGGCTTGGTTGCTGTGAGTTGGCCTGCAGGTTCTGGCCTCTaGTACAATCTAACCTGCAGACGCGTGGACGGTTCTTCGCTCAGG +
Preference number: 1 (lower is better)
Translates to: GGGLVAVSWPAGSGL*YNLTCRRVDGSSLR
Trigger: CCTGAGCGAAGAACCGTCCACGCGTCTGCAGGTTAGATTGTAGCAGAGGCCAGAACCTGCAGGCCAACTCACAGCAACCAAGCCCCCTCC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000105306.3
ENSMUST00000105307.8
3UTR GCA 90 bp GCTGTGAGTTGGCCTGCAGGTTCTGGCCTCTGCTACAATCTAACCTaGAGACGCGTGGACGGTTCTTCGCTCAGGAGCACACGGAAGCCA +
Preference number: 1 (lower is better)
Translates to: AVSWPAGSGLCYNLT*RRVDGSSLRSTRKP
Trigger: TGGCTTCCGTGTGCTCCTGAGCGAAGAACCGTCCACGCGTCTGCAGGTTAGATTGTAGCAGAGGCCAGAACCTGCAGGCCAACTCACAGC
59% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000105306.3
ENSMUST00000105307.8
3UTR CCA 90 bp AAGTTCACTGACCGGAGAGTAGCTGAGGCAGTGGAGGCAGCTCCTTaGCCCAGTACAGACAGACAGACACCAGGAACAATTTTTGTGTTT +
Preference number: 1 (lower is better)
Translates to: KFTDRRVAEAVEAAP*PSTDRQTPGTIFVF
Trigger: AAACACAAAAATTGTTCCTGGTGTCTGTCTGTCTGTACTGGGCCAAGGAGCTGCCTCCACTGCCTCAGCTACTCTCCGGTCAGTGAACTT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000105306.3
ENSMUST00000105307.8
3UTR CCA 90 bp CTTTTAATGGCAGAGAAAGCACACCAAACTGAACAGAGGTCTAGGTaGGAGTTACCAATGTACAGATCAACACCTGGAGGTCCAGAGAGT +
Preference number: 1 (lower is better)
Translates to: LLMAEKAHQTEQRSR*ELPMYRSTPGGPES
Trigger: ACTCTCTGGACCTCCAGGTGTTGATCTGTACATTGGTAACTCCCACCTAGACCTCTGTTCAGTTTGGTGTGCTTTCTCTGCCATTAAAAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000105306.3
ENSMUST00000105307.8
3UTR GCA 90 bp GTTATGTGGGGGTGCCCTAGTCTCACCCCCAAACCACAATCAGCATaGAGGTTATTGTCAACTATTAGATTCGAGATAATTAGAGATAAT +
Preference number: 1 (lower is better)
Translates to: VMWGCPSLTPKPQSA*RLLSTIRFEIIRDN
Trigger: ATTATCTCTAATTATCTCGAATCTAATAGTTGACAATAACCTGCATGCTGATTGTGGTTTGGGGGTGAGACTAGGGCACCCCCACATAAC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000105306.3
ENSMUST00000105307.8
3UTR CAA 90 bp GTCCTTGGCAGCAGGTGCCCATGGCTCCGGGGCACTGGAGGGGGCTaGGTTGCTGTGAGTTGGCCTGCAGGTTCTGGCCTCTGCTACAAT +
Preference number: 2 (lower is better)
Translates to: VLGSRCPWLRGTGGG*VAVSWPAGSGLCYN
Trigger: ATTGTAGCAGAGGCCAGAACCTGCAGGCCAACTCACAGCAACCAAGCCCCCTCCAGTGCCCCGGAGCCATGGGCACCTGCTGCCAAGGAC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000105306.3
ENSMUST00000105307.8
3UTR CAA 90 bp AAGCAGAGATCTCTAAGCCTTGGTCCGTCTGCTAGATCATGGTCCTaGGCAGCAGGTGCCCATGGCTCCGGGGCACTGGAGGGGGCTTGG +
Preference number: 2 (lower is better)
Translates to: KQRSLSLGPSARSWS*AAGAHGSGALEGAW
Trigger: CCAAGCCCCCTCCAGTGCCCCGGAGCCATGGGCACCTGCTGCCAAGGACCATGATCTAGCAGACGGACCAAGGCTTAGAGATCTCTGCTT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000105306.3
ENSMUST00000105307.8
3UTR-3UTR GCA 90 bp CTAGATCATGGTCCTTGGCAGCAGGTGCCCATGGCTCCGGGGCACTGGAGGGGGGCAGGTTCTGGCCTCTaGTACAATCTAACCTGCAGA +
Preference number: 2 (lower is better)
Translates to: LDHGPWQQVPMAPGHWRGAGSGL*YNLTCR
Trigger: TCTGCAGGTTAGATTGTAGCAGAGGCCAGAACCTGC...CCCCCTCCAGTGCCCCGGAGCCATGGGCACCTGCTGCCAAGGACCATGATCTAG
60% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000105306.3
ENSMUST00000105307.8
3UTR-3UTR CCA 90 bp GTCCAGAGAGTGTTCGACATCCACAGAGAACCAGCTGGGTTAGAGAGCAGCATCCAGAAACCTTGCTCCTaGGGACCATTGCCTCGTGGG +
Preference number: 2 (lower is better)
Translates to: VQRVFDIHREPAGLESSIQKPCS*GPLPRG
Trigger: CCCACGAGGCAATGGTCCCCAGGAGCAAGGTTTCTG...GATGCTGCTCTCTAACCCAGCTGGTTCTCTGTGGATGTCGAACACTCTCTGGAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000105306.3
ENSMUST00000105307.8
3UTR-3UTR GCA 90 bp GTGTGTCACTCTTGTGTCTGTGACTTGGTTGTCACCTCAAGCAGTTGCTCCCATTGGAGGGGGCTTGGTTaGTGTGAGTTGGCCTGCAGG +
Preference number: 2 (lower is better)
Translates to: VCHSCVCDLVVTSSSCSHWRGLG*CELACR
Trigger: CCTGCAGGCCAACTCACAGCAACCAAGCCCCCTCCA...ATGGGAGCAACTGCTTGAGGTGACAACCAAGTCACAGACACAAGAGTGACACAC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000105306.3
ENSMUST00000105307.8
3UTR-3UTR CCA 90 bp GTCCAGAGAGTGTTCGACATCCACAGAGAACCAGCTGGGTTAGAGAGCAGCATCCCTCATGCCGGGCAATaGCATCAACAACTAGCCACC +
Preference number: 2 (lower is better)
Translates to: VQRVFDIHREPAGLESSIPHAGQ*HQQLAT
Trigger: GGTGGCTAGTTGTTGATGCCATTGCCCGGCATGAGG...GATGCTGCTCTCTAACCCAGCTGGTTCTCTGTGGATGTCGAACACTCTCTGGAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000105306.3
ENSMUST00000105307.8
3UTR-3UTR GCA 90 bp GTGTGTCACTCTTGTGTCTGTGACTTGGTTGTCACCTCAAGCAGTTGCTCCCATGGGAGCCAGAAACCTTaGTCCTGGGGACCATTGCCT +
Preference number: 2 (lower is better)
Translates to: VCHSCVCDLVVTSSSCSHGSQKP*SWGPLP
Trigger: AGGCAATGGTCCCCAGGAGCAAGGTTTCTGGCTCCC...ATGGGAGCAACTGCTTGAGGTGACAACCAAGTCACAGACACAAGAGTGACACAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000105306.3
ENSMUST00000105307.8
3UTR-3UTR CCA 90 bp GTGTGTCACTCTTGTGTCTGTGACTTGGTTGTCACCTCAAGCAGTTGCTCCCATCAGAAACCTTGCTCCTaGGGACCATTGCCTCGTGGG +
Preference number: 2 (lower is better)
Translates to: VCHSCVCDLVVTSSSCSHQKPCS*GPLPRG
Trigger: CCCACGAGGCAATGGTCCCCAGGAGCAAGGTTTCTG...ATGGGAGCAACTGCTTGAGGTGACAACCAAGTCACAGACACAAGAGTGACACAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000105306.3
ENSMUST00000105307.8
3UTR-3UTR CCA 90 bp GTCCAGAGAGTGTTCGACATCCACAGAGAACCAGCTGGGTTAGAGAGCAGCATCTCATGGATGACTACATaGAAGAGAGAGGCCTCGGGG +
Preference number: 2 (lower is better)
Translates to: VQRVFDIHREPAGLESSISWMTT*KREASG
Trigger: CCCCGAGGCCTCTCTCTTCCATGTAGTCATCCATGA...GATGCTGCTCTCTAACCCAGCTGGTTCTCTGTGGATGTCGAACACTCTCTGGAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000105306.3
ENSMUST00000105307.8
3UTR-3UTR GCA 90 bp GTGTGTCACTCTTGTGTCTGTGACTTGGTTGTCACCTCAAGCAGTTGCTCCCATTGCTGTGAGTTGGCCTaGAGGTTCTGGCCTCTGCTA +
Preference number: 2 (lower is better)
Translates to: VCHSCVCDLVVTSSSCSHCCELA*RFWPLL
Trigger: TAGCAGAGGCCAGAACCTGCAGGCCAACTCACAGCA...ATGGGAGCAACTGCTTGAGGTGACAACCAAGTCACAGACACAAGAGTGACACAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000105306.3
ENSMUST00000105307.8
3UTR-3UTR CCA 90 bp GCTCTGAGATTAATAGTAGATTCTCTGACGTGCTCCCCCACCCCCACTCAGTTACTAGATCATGGTCCTTaGCAGCAGGTGCCCATGGCT +
Preference number: 2 (lower is better)
Translates to: ALRLIVDSLTCSPTPTQLLDHGP*QQVPMA
Trigger: AGCCATGGGCACCTGCTGCCAAGGACCATGATCTAG...TAACTGAGTGGGGGTGGGGGAGCACGTCAGAGAATCTACTATTAATCTCAGAGC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000105306.3
ENSMUST00000105307.8
3UTR CAA 90 bp TGGCCCAGTACAGACAGACAGACACCAGGAACAATTTTTGTGTTTTaGTGGTGCCAATGCAGAAGGGAGCCAGAAACCTTGCTCCTGGGG +
Preference number: 2 (lower is better)
Translates to: WPSTDRQTPGTIFVF*WCQCRREPETLLLG
Trigger: CCCCAGGAGCAAGGTTTCTGGCTCCCTTCTGCATTGGCACCACAAAAACACAAAAATTGTTCCTGGTGTCTGTCTGTCTGTACTGGGCCA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000105306.3
ENSMUST00000105307.8
3UTR-3UTR TCA 90 bp GTCCAGAGAGTGTTCGACATCCACAGAGAACCAGCTGGGTTAGAGAGCAGCATCTCACTCTTGTGTCTGTaGCTTGGTTGTCACCTCAAG +
Preference number: 2 (lower is better)
Translates to: VQRVFDIHREPAGLESSISLLCL*LGCHLK
Trigger: CTTGAGGTGACAACCAAGTCACAGACACAAGAGTGA...GATGCTGCTCTCTAACCCAGCTGGTTCTCTGTGGATGTCGAACACTCTCTGGAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000105306.3
ENSMUST00000105307.8
3UTR-3UTR CCA 90 bp AAAACAAAGCACAAACATGATGTTGTACAGGTTTGGTCCATGCAAATGCATGTTGGCAGCAGGTGCCCATaGCTCCGGGGCACTGGAGGG +
Preference number: 2 (lower is better)
Translates to: KTKHKHDVVQVWSMQMHVGSRCP*LRGTGG
Trigger: CCCTCCAGTGCCCCGGAGCCATGGGCACCTGCTGCC...AACATGCATTTGCATGGACCAAACCTGTACAACATCATGTTTGTGCTTTGTTTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000105306.3
ENSMUST00000105307.8
3UTR-3UTR GCA 90 bp GTGTGTCACTCTTGTGTCTGTGACTTGGTTGTCACCTCAAGCAGTTGCTCCCATGCAGGTTCTGGCCTCTaGTACAATCTAACCTGCAGA +
Preference number: 2 (lower is better)
Translates to: VCHSCVCDLVVTSSSCSHAGSGL*YNLTCR
Trigger: TCTGCAGGTTAGATTGTAGCAGAGGCCAGAACCTGC...ATGGGAGCAACTGCTTGAGGTGACAACCAAGTCACAGACACAAGAGTGACACAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000105306.3
ENSMUST00000105307.8
3UTR-3UTR TCA 90 bp GTCCAGAGAGTGTTCGACATCCACAGAGAACCAGCTGGGTTAGAGAGCAGCATCTCAAGGTCATACTACTaGGGTTTTCATCAGTCAACC +
Preference number: 2 (lower is better)
Translates to: VQRVFDIHREPAGLESSISRSYY*GFHQST
Trigger: GGTTGACTGATGAAAACCTCAGTAGTATGACCTTGA...GATGCTGCTCTCTAACCCAGCTGGTTCTCTGTGGATGTCGAACACTCTCTGGAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000105306.3
ENSMUST00000105307.8
3UTR-3UTR GCA 90 bp GCTCTGAGATTAATAGTAGATTCTCTGACGTGCTCCCCCACCCCCACTCAGTTATTTTTGTGGTGCCAATaGAGAAGGGAGCCAGAAACC +
Preference number: 2 (lower is better)
Translates to: ALRLIVDSLTCSPTPTQLFLWCQ*RREPET
Trigger: GGTTTCTGGCTCCCTTCTGCATTGGCACCACAAAAA...TAACTGAGTGGGGGTGGGGGAGCACGTCAGAGAATCTACTATTAATCTCAGAGC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 15 nt.
Matches the following 2 transcripts:
ENSMUST00000105306.3
ENSMUST00000105307.8
3UTR-3UTR TCA 90 bp GTGTGTCACTCTTGTGTCTGTGACTTGGTTGTCACCTCAAGCAGTTGCTCCCATAAGGTCATTCGTGGGTaGTGTGATGCTTTTCAAGGT +
Preference number: 2 (lower is better)
Translates to: VCHSCVCDLVVTSSSCSHKVIRG*CDAFQG
Trigger: ACCTTGAAAAGCATCACATCACCCACGAATGACCTT...ATGGGAGCAACTGCTTGAGGTGACAACCAAGTCACAGACACAAGAGTGACACAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000105306.3
ENSMUST00000105307.8
3UTR CAA 90 bp CACAAACATGATGTTGTACAGGTTTGGTCCATGCAAATGCATGTTTaGTTATGTGGGGGTGCCCTAGTCTCACCCCCAAACCACAATCAG +
Preference number: 2 (lower is better)
Translates to: HKHDVVQVWSMQMHV*LCGGALVSPPNHNQ
Trigger: CTGATTGTGGTTTGGGGGTGAGACTAGGGCACCCCCACATAACAAAACATGCATTTGCATGGACCAAACCTGTACAACATCATGTTTGTG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000105306.3
ENSMUST00000105307.8
3UTR-3UTR GCA 90 bp GTGTGTCACTCTTGTGTCTGTGACTTGGTTGTCACCTCAAGCAGTTGCTCCCATAGAGATAATTGGCAGTaGACCTCTTTTGTGGAACCA +
Preference number: 2 (lower is better)
Translates to: VCHSCVCDLVVTSSSCSHRDNWQ*TSFVEP
Trigger: TGGTTCCACAAAAGAGGTGCACTGCCAATTATCTCT...ATGGGAGCAACTGCTTGAGGTGACAACCAAGTCACAGACACAAGAGTGACACAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000105306.3
ENSMUST00000105307.8
3UTR-3UTR CCA 90 bp TCAACTATTAGATTCGAGATAATTAGAGATAATTGGCAGTGCACCTCTTTTGTGATGGCTCCGGGGCACTaGAGGGGGCTTGGTTGCTGT +
Preference number: 2 (lower is better)
Translates to: STIRFEIIRDNWQCTSFVMAPGH*RGLGCC
Trigger: ACAGCAACCAAGCCCCCTCCAGTGCCCCGGAGCCAT...CACAAAAGAGGTGCACTGCCAATTATCTCTAATTATCTCGAATCTAATAGTTGA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000105306.3
ENSMUST00000105307.8
3UTR-3UTR CCA 90 bp GTGTGTCACTCTTGTGTCTGTGACTTGGTTGTCACCTCAAGCAGTTGCTCCCATAGTGCACCTCTTTTGTaGAACCATGATCGAATCACT +
Preference number: 2 (lower is better)
Translates to: VCHSCVCDLVVTSSSCSHSAPLL*NHDRIT
Trigger: AGTGATTCGATCATGGTTCCACAAAAGAGGTGCACT...ATGGGAGCAACTGCTTGAGGTGACAACCAAGTCACAGACACAAGAGTGACACAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000105306.3
ENSMUST00000105307.8
3UTR-3UTR TCA 90 bp TCAACTATTAGATTCGAGATAATTAGAGATAATTGGCAGTGCACCTCTTTTGTGACTAGCCACCAGGGCTaGTGCCTGGGCAAGTACAGC +
Preference number: 2 (lower is better)
Translates to: STIRFEIIRDNWQCTSFVTSHQG*CLGKYS
Trigger: GCTGTACTTGCCCAGGCATCAGCCCTGGTGGCTAGT...CACAAAAGAGGTGCACTGCCAATTATCTCTAATTATCTCGAATCTAATAGTTGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000105306.3
ENSMUST00000105307.8
3UTR-3UTR GCA 90 bp CAAAGCACAAACATGATGTTGTACAGGTTTGGTCCATGCAAATGCATGTTTTGTTGCTGTGAGTTGGCCTaGAGGTTCTGGCCTCTGCTA +
Preference number: 2 (lower is better)
Translates to: QSTNMMLYRFGPCKCMFCCCELA*RFWPLL
Trigger: TAGCAGAGGCCAGAACCTGCAGGCCAACTCACAGCA...ACAAAACATGCATTTGCATGGACCAAACCTGTACAACATCATGTTTGTGCTTTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000105306.3
ENSMUST00000105307.8
3UTR-3UTR CCA 90 bp GTGTGTCACTCTTGTGTCTGTGACTTGGTTGTCACCTCAAGCAGTTGCTCCCATATTTTTGTGTTTTTGTaGTGCCAATGCAGAAGGGAG +
Preference number: 2 (lower is better)
Translates to: VCHSCVCDLVVTSSSCSHIFVFL*CQCRRE
Trigger: CTCCCTTCTGCATTGGCACCACAAAAACACAAAAAT...ATGGGAGCAACTGCTTGAGGTGACAACCAAGTCACAGACACAAGAGTGACACAC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000105306.3
ENSMUST00000105307.8
3UTR-3UTR CCA 90 bp CAAAGCACAAACATGATGTTGTACAGGTTTGGTCCATGCAAATGCATGTTTTGTTTGGTTGCTGTGAGTTaGCCTGCAGGTTCTGGCCTC +
Preference number: 2 (lower is better)
Translates to: QSTNMMLYRFGPCKCMFCLVAVS*PAGSGL
Trigger: GAGGCCAGAACCTGCAGGCCAACTCACAGCAACCAA...ACAAAACATGCATTTGCATGGACCAAACCTGTACAACATCATGTTTGTGCTTTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000105306.3
ENSMUST00000105307.8
3UTR-3UTR CCA 90 bp GTCCAGAGAGTGTTCGACATCCACAGAGAACCAGCTGGGTTAGAGAGCAGCATCAATCATGCTAGGAAATaGGGTTATCAACAAAACTTG +
Preference number: 2 (lower is better)
Translates to: VQRVFDIHREPAGLESSINHARK*GYQQNL
Trigger: CAAGTTTTGTTGATAACCCCATTTCCTAGCATGATT...GATGCTGCTCTCTAACCCAGCTGGTTCTCTGTGGATGTCGAACACTCTCTGGAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000105306.3
ENSMUST00000105307.8
3UTR CAA 90 bp TCACTAAGGCAGGAATATGTGACCTTGTATAGTATCAGCAGGAATTaGTCAGATGCAAGTTTACACGGCACGGACCTGCAACTCACTATC +
Preference number: 2 (lower is better)
Translates to: SLRQEYVTLYSISRN*SDASLHGTDLQLTI
Trigger: GATAGTGAGTTGCAGGTCCGTGCCGTGTAAACTTGCATCTGACAAATTCCTGCTGATACTATACAAGGTCACATATTCCTGCCTTAGTGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000105306.3
ENSMUST00000105307.8
3UTR CAA 90 bp GGGTGCCCTAGTCTCACCCCCAAACCACAATCAGCATGCAGGTTATaGTCAACTATTAGATTCGAGATAATTAGAGATAATTGGCAGTGC +
Preference number: 2 (lower is better)
Translates to: GCPSLTPKPQSACRL*STIRFEIIRDNWQC
Trigger: GCACTGCCAATTATCTCTAATTATCTCGAATCTAATAGTTGACAATAACCTGCATGCTGATTGTGGTTTGGGGGTGAGACTAGGGCACCC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000105306.3
ENSMUST00000105307.8
3UTR-3UTR CCA 90 bp TCAACTATTAGATTCGAGATAATTAGAGATAATTGGCAGTGCACCTCTTTTGTGCCGTCTGCTAGATCATaGTCCTTGGCAGCAGGTGCC +
Preference number: 2 (lower is better)
Translates to: STIRFEIIRDNWQCTSFVPSARS*SLAAGA
Trigger: GGCACCTGCTGCCAAGGACCATGATCTAGCAGACGG...CACAAAAGAGGTGCACTGCCAATTATCTCTAATTATCTCGAATCTAATAGTTGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000105306.3
ENSMUST00000105307.8
3UTR-3UTR GCA 90 bp GCGAGAAGCGAGAGAACATATCTCACTTTGGCAAAAGAAAACAAAGCACAAACATTTTTGTGGTGCCAATaGAGAAGGGAGCCAGAAACC +
Preference number: 2 (lower is better)
Translates to: ARSERTYLTLAKENKAQTFLWCQ*RREPET
Trigger: GGTTTCTGGCTCCCTTCTGCATTGGCACCACAAAAA...TGTTTGTGCTTTGTTTTCTTTTGCCAAAGTGAGATATGTTCTCTCGCTTCTCGC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000105306.3
ENSMUST00000105307.8
3UTR CAA 90 bp TTTTGTGGAACCATGATCGAATCACTAAGGCAGGAATATGTGACCTaGTATAGTATCAGCAGGAATTTGTCAGATGCAAGTTTACACGGC +
Preference number: 2 (lower is better)
Translates to: FCGTMIESLRQEYVT*YSISRNLSDASLHG
Trigger: GCCGTGTAAACTTGCATCTGACAAATTCCTGCTGATACTATACAAGGTCACATATTCCTGCCTTAGTGATTCGATCATGGTTCCACAAAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000105306.3
ENSMUST00000105307.8
3UTR-3UTR CCA 90 bp AAAACAAAGCACAAACATGATGTTGTACAGGTTTGGTCCATGCAAATGCATGTTCCCACCCCTAAAAATTaGCCATGTGACTTCCTCATG +
Preference number: 2 (lower is better)
Translates to: KTKHKHDVVQVWSMQMHVPTPKN*PCDFLM
Trigger: CATGAGGAAGTCACATGGCCAATTTTTAGGGGTGGG...AACATGCATTTGCATGGACCAAACCTGTACAACATCATGTTTGTGCTTTGTTTT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000105306.3
ENSMUST00000105307.8
3UTR-3UTR GCA 90 bp GCGAGAAGCGAGAGAACATATCTCACTTTGGCAAAAGAAAACAAAGCACAAACATTTGGTCCATGCAAATaGATGTTTTGTTATGTGGGG +
Preference number: 2 (lower is better)
Translates to: ARSERTYLTLAKENKAQTFGPCK*MFCYVG
Trigger: CCCCACATAACAAAACATGCATTTGCATGGACCAAA...TGTTTGTGCTTTGTTTTCTTTTGCCAAAGTGAGATATGTTCTCTCGCTTCTCGC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000105306.3
ENSMUST00000105307.8
3UTR-3UTR CCA 90 bp CAAAGCACAAACATGATGTTGTACAGGTTTGGTCCATGCAAATGCATGTTTTGTATTTTTGTGTTTTTGTaGTGCCAATGCAGAAGGGAG +
Preference number: 2 (lower is better)
Translates to: QSTNMMLYRFGPCKCMFCIFVFL*CQCRRE
Trigger: CTCCCTTCTGCATTGGCACCACAAAAACACAAAAAT...ACAAAACATGCATTTGCATGGACCAAACCTGTACAACATCATGTTTGTGCTTTG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000105306.3
ENSMUST00000105307.8
3UTR-3UTR GCA 90 bp AAAACAAAGCACAAACATGATGTTGTACAGGTTTGGTCCATGCAAATGCATGTTAAACCACAATCAGCATaGAGGTTATTGTCAACTATT +
Preference number: 2 (lower is better)
Translates to: KTKHKHDVVQVWSMQMHVKPQSA*RLLSTI
Trigger: AATAGTTGACAATAACCTGCATGCTGATTGTGGTTT...AACATGCATTTGCATGGACCAAACCTGTACAACATCATGTTTGTGCTTTGTTTT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000105306.3
ENSMUST00000105307.8
3UTR GCA 72 bp GTGCCCATGGCTCCGGGGCACTGGAGGGGGCTTGGTTaGTGTGAGTTGGCCTGCAGGTTCTGGCCTCTGCTA +
Preference number: 3 (lower is better)
Translates to: VPMAPGHWRGLG*CELACRFWPLL
Trigger: TAGCAGAGGCCAGAACCTGCAGGCCAACTCACAGCAACCAAGCCCCCTCCAGTGCCCCGGAGCCATGGGCAC
65% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000105306.3
ENSMUST00000105307.8
3UTR CCA 72 bp CTCCGGGGCACTGGAGGGGGCTTGGTTGCTGTGAGTTaGCCTGCAGGTTCTGGCCTCTGCTACAATCTAACC +
Preference number: 3 (lower is better)
Translates to: LRGTGGGLVAVS*PAGSGLCYNLT
Trigger: GGTTAGATTGTAGCAGAGGCCAGAACCTGCAGGCCAACTCACAGCAACCAAGCCCCCTCCAGTGCCCCGGAG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000105306.3
ENSMUST00000105307.8
3UTR GCA 72 bp GGGCACTGGAGGGGGCTTGGTTGCTGTGAGTTGGCCTaGAGGTTCTGGCCTCTGCTACAATCTAACCTGCAG +
Preference number: 3 (lower is better)
Translates to: GHWRGLGCCELA*RFWPLLQSNLQ
Trigger: CTGCAGGTTAGATTGTAGCAGAGGCCAGAACCTGCAGGCCAACTCACAGCAACCAAGCCCCCTCCAGTGCCC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000105306.3
ENSMUST00000105307.8
3UTR CCA 72 bp CAGAGATCTCTAAGCCTTGGTCCGTCTGCTAGATCATaGTCCTTGGCAGCAGGTGCCCATGGCTCCGGGGCA +
Preference number: 3 (lower is better)
Translates to: QRSLSLGPSARS*SLAAGAHGSGA
Trigger: TGCCCCGGAGCCATGGGCACCTGCTGCCAAGGACCATGATCTAGCAGACGGACCAAGGCTTAGAGATCTCTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000105306.3
ENSMUST00000105307.8
3UTR-3UTR CAA 90 bp TGTGAGTTGGCCTGCAGGTTCTGGCCTCTGCTACAATCTAACCTGCAGACGCGTAGGGAGCCAGAAACCTaGCTCCTGGGGACCATTGCC +
Preference number: 3 (lower is better)
Translates to: CELACRFWPLLQSNLQTRREPET*LLGTIA
Trigger: GGCAATGGTCCCCAGGAGCAAGGTTTCTGGCTCCCT...ACGCGTCTGCAGGTTAGATTGTAGCAGAGGCCAGAACCTGCAGGCCAACTCACA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000105306.3
ENSMUST00000105307.8
3UTR CCA 72 bp AGGGGGCTTGGTTGCTGTGAGTTGGCCTGCAGGTTCTaGCCTCTGCTACAATCTAACCTGCAGACGCGTGGA +
Preference number: 3 (lower is better)
Translates to: RGLGCCELACRF*PLLQSNLQTRG
Trigger: TCCACGCGTCTGCAGGTTAGATTGTAGCAGAGGCCAGAACCTGCAGGCCAACTCACAGCAACCAAGCCCCCT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000105306.3
ENSMUST00000105307.8
3UTR CCA 72 bp GACCGGAGAGTAGCTGAGGCAGTGGAGGCAGCTCCTTaGCCCAGTACAGACAGACAGACACCAGGAACAATT +
Preference number: 3 (lower is better)
Translates to: DRRVAEAVEAAP*PSTDRQTPGTI
Trigger: AATTGTTCCTGGTGTCTGTCTGTCTGTACTGGGCCAAGGAGCTGCCTCCACTGCCTCAGCTACTCTCCGGTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000105306.3
ENSMUST00000105307.8
3UTR-3UTR CAA 90 bp GTCCAGAGAGTGTTCGACATCCACAGAGAACCAGCTGGGTTAGAGAGCAGCATCAGTGGAGGCAGCTCCTaGGCCCAGTACAGACAGACA +
Preference number: 3 (lower is better)
Translates to: VQRVFDIHREPAGLESSISGGSS*AQYRQT
Trigger: TGTCTGTCTGTACTGGGCCAAGGAGCTGCCTCCACT...GATGCTGCTCTCTAACCCAGCTGGTTCTCTGTGGATGTCGAACACTCTCTGGAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000105306.3
ENSMUST00000105307.8
3UTR-3UTR CAA 90 bp GTGTGTCACTCTTGTGTCTGTGACTTGGTTGTCACCTCAAGCAGTTGCTCCCATGGCACTGGAGGGGGCTaGGTTGCTGTGAGTTGGCCT +
Preference number: 3 (lower is better)
Translates to: VCHSCVCDLVVTSSSCSHGTGGG*VAVSWP
Trigger: AGGCCAACTCACAGCAACCAAGCCCCCTCCAGTGCC...ATGGGAGCAACTGCTTGAGGTGACAACCAAGTCACAGACACAAGAGTGACACAC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000105306.3
ENSMUST00000105307.8
3UTR GCA 72 bp TTGGTTGCTGTGAGTTGGCCTGCAGGTTCTGGCCTCTaGTACAATCTAACCTGCAGACGCGTGGACGGTTCT +
Preference number: 3 (lower is better)
Translates to: LVAVSWPAGSGL*YNLTCRRVDGS
Trigger: AGAACCGTCCACGCGTCTGCAGGTTAGATTGTAGCAGAGGCCAGAACCTGCAGGCCAACTCACAGCAACCAA
56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000105306.3
ENSMUST00000105307.8
3UTR-3UTR CAA 90 bp GTGTGTCACTCTTGTGTCTGTGACTTGGTTGTCACCTCAAGCAGTTGCTCCCATGCTAGATCATGGTCCTaGGCAGCAGGTGCCCATGGC +
Preference number: 3 (lower is better)
Translates to: VCHSCVCDLVVTSSSCSHARSWS*AAGAHG
Trigger: GCCATGGGCACCTGCTGCCAAGGACCATGATCTAGC...ATGGGAGCAACTGCTTGAGGTGACAACCAAGTCACAGACACAAGAGTGACACAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000105306.3
ENSMUST00000105307.8
3UTR TCA 72 bp CCACAGAGAACCAGCTGGGTTAGAGAGCAGCATCCCTaGAGGCAAGCGACAGTGTGTCACTCTTGTGTCTGT +
Preference number: 3 (lower is better)
Translates to: PQRTSWVREQHP*RQATVCHSCVC
Trigger: ACAGACACAAGAGTGACACACTGTCGCTTGCCTTCAGGGATGCTGCTCTCTAACCCAGCTGGTTCTCTGTGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000105306.3
ENSMUST00000105307.8
3UTR GCA 72 bp TTCCCACCCCTAAAAATTGGCCATGTGACTTCCTCATaGCGGGCAATGGCATCAACAACTAGCCACCAGGGC +
Preference number: 3 (lower is better)
Translates to: FPPLKIGHVTSS*RAMASTTSHQG
Trigger: GCCCTGGTGGCTAGTTGTTGATGCCATTGCCCGGCATGAGGAAGTCACATGGCCAATTTTTAGGGGTGGGAA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000105306.3
ENSMUST00000105307.8
3UTR-3UTR CAA 90 bp GTGTGTCACTCTTGTGTCTGTGACTTGGTTGTCACCTCAAGCAGTTGCTCCCATAGTGGAGGCAGCTCCTaGGCCCAGTACAGACAGACA +
Preference number: 3 (lower is better)
Translates to: VCHSCVCDLVVTSSSCSHSGGSS*AQYRQT
Trigger: TGTCTGTCTGTACTGGGCCAAGGAGCTGCCTCCACT...ATGGGAGCAACTGCTTGAGGTGACAACCAAGTCACAGACACAAGAGTGACACAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000105306.3
ENSMUST00000105307.8
3UTR GCA 72 bp TGGATGACTACATGGAAGAGAGAGGCCTCGGGGGCCTaGATCACAAAGGAGTTGATGCTGCAGATAGACTCA +
Preference number: 3 (lower is better)
Translates to: WMTTWKREASGA*ITKELMLQIDS
Trigger: TGAGTCTATCTGCAGCATCAACTCCTTTGTGATGCAGGCCCCCGAGGCCTCTCTCTTCCATGTAGTCATCCA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000105306.3
ENSMUST00000105307.8
3UTR TCA 72 bp ATGAAACGAGACTTGACGTGGGTCCTTGACAGGTGTTaGGGGAGTAGGACAACAGGCGAAGGATACAAGTTC +
Preference number: 3 (lower is better)
Translates to: MKRDLTWVLDRC*GSRTTGEGYKF
Trigger: GAACTTGTATCCTTCGCCTGTTGTCCTACTCCCTCAACACCTGTCAAGGACCCACGTCAAGTCTCGTTTCAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000105306.3
ENSMUST00000105307.8
3UTR-3UTR CAA 90 bp GCGAGAAGCGAGAGAACATATCTCACTTTGGCAAAAGAAAACAAAGCACAAACAAGGGAGCCAGAAACCTaGCTCCTGGGGACCATTGCC +
Preference number: 3 (lower is better)
Translates to: ARSERTYLTLAKENKAQTREPET*LLGTIA
Trigger: GGCAATGGTCCCCAGGAGCAAGGTTTCTGGCTCCCT...TGTTTGTGCTTTGTTTTCTTTTGCCAAAGTGAGATATGTTCTCTCGCTTCTCGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000105306.3
ENSMUST00000105307.8
3UTR GCA 72 bp TCTTGTGTCTGTGACTTGGTTGTCACCTCAAGCAGTTaGTCCCATAATCATTTGATGGTAGGGCTGGGTAGG +
Preference number: 3 (lower is better)
Translates to: SCVCDLVVTSSS*SHNHLMVGLGR
Trigger: CCTACCCAGCCCTACCATCAAATGATTATGGGAGCAACTGCTTGAGGTGACAACCAAGTCACAGACACAAGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000105306.3
ENSMUST00000105307.8
3UTR CCA 72 bp GCAGAGAAAGCACACCAAACTGAACAGAGGTCTAGGTaGGAGTTACCAATGTACAGATCAACACCTGGAGGT +
Preference number: 3 (lower is better)
Translates to: AEKAHQTEQRSR*ELPMYRSTPGG
Trigger: ACCTCCAGGTGTTGATCTGTACATTGGTAACTCCCACCTAGACCTCTGTTCAGTTTGGTGTGCTTTCTCTGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000105306.3
ENSMUST00000105307.8
3UTR-3UTR CAA 90 bp GTCCAGAGAGTGTTCGACATCCACAGAGAACCAGCTGGGTTAGAGAGCAGCATCACAATTTTTGTGTTTTaGTGGTGCCAATGCAGAAGG +
Preference number: 3 (lower is better)
Translates to: VQRVFDIHREPAGLESSITIFVF*WCQCRR
Trigger: CCTTCTGCATTGGCACCACAAAAACACAAAAATTGT...GATGCTGCTCTCTAACCCAGCTGGTTCTCTGTGGATGTCGAACACTCTCTGGAC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000105306.3
ENSMUST00000105307.8
3UTR-3UTR CAA 90 bp CAAAGCACAAACATGATGTTGTACAGGTTTGGTCCATGCAAATGCATGTTTTGTCTTGGTTGCTGTGAGTaGGCCTGCAGGTTCTGGCCT +
Preference number: 3 (lower is better)
Translates to: QSTNMMLYRFGPCKCMFCLGCCE*ACRFWP
Trigger: AGGCCAGAACCTGCAGGCCAACTCACAGCAACCAAG...ACAAAACATGCATTTGCATGGACCAAACCTGTACAACATCATGTTTGTGCTTTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000105306.3
ENSMUST00000105307.8
3UTR GCA 72 bp AGACAGACACCAGGAACAATTTTTGTGTTTTTGTGGTaGCAATGCAGAAGGGAGCCAGAAACCTTGCTCCTG +
Preference number: 3 (lower is better)
Translates to: RQTPGTIFVFLW*QCRREPETLLL
Trigger: CAGGAGCAAGGTTTCTGGCTCCCTTCTGCATTGGCACCACAAAAACACAAAAATTGTTCCTGGTGTCTGTCT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000105306.3
ENSMUST00000105307.8
3UTR-3UTR CAA 90 bp GTGTGTCACTCTTGTGTCTGTGACTTGGTTGTCACCTCAAGCAGTTGCTCCCATGGTTATCAACAAAACTaGGCCATCCCAAAAGACAAA +
Preference number: 3 (lower is better)
Translates to: VCHSCVCDLVVTSSSCSHGYQQN*AIPKDK
Trigger: TTTGTCTTTTGGGATGGCCAAGTTTTGTTGATAACC...ATGGGAGCAACTGCTTGAGGTGACAACCAAGTCACAGACACAAGAGTGACACAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000105306.3
ENSMUST00000105307.8
3UTR-3UTR CAA 90 bp GCGAGAAGCGAGAGAACATATCTCACTTTGGCAAAAGAAAACAAAGCACAAACACACCAGGAACAATTTTaGTGTTTTTGTGGTGCCAAT +
Preference number: 3 (lower is better)
Translates to: ARSERTYLTLAKENKAQTHQEQF*CFCGAN
Trigger: ATTGGCACCACAAAAACACAAAAATTGTTCCTGGTG...TGTTTGTGCTTTGTTTTCTTTTGCCAAAGTGAGATATGTTCTCTCGCTTCTCGC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENSMUST00000105306.3
ENSMUST00000105307.8
3UTR-3UTR CAA 90 bp CAAAGCACAAACATGATGTTGTACAGGTTTGGTCCATGCAAATGCATGTTTTGTTCAGCATGCAGGTTATaGTCAACTATTAGATTCGAG +
Preference number: 3 (lower is better)
Translates to: QSTNMMLYRFGPCKCMFCSACRL*STIRFE
Trigger: CTCGAATCTAATAGTTGACAATAACCTGCATGCTGA...ACAAAACATGCATTTGCATGGACCAAACCTGTACAACATCATGTTTGTGCTTTG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000105306.3
ENSMUST00000105307.8
3UTR-3UTR CAA 90 bp TCAACTATTAGATTCGAGATAATTAGAGATAATTGGCAGTGCACCTCTTTTGTGCACCAGGAACAATTTTaGTGTTTTTGTGGTGCCAAT +
Preference number: 3 (lower is better)
Translates to: STIRFEIIRDNWQCTSFVHQEQF*CFCGAN
Trigger: ATTGGCACCACAAAAACACAAAAATTGTTCCTGGTG...CACAAAAGAGGTGCACTGCCAATTATCTCTAATTATCTCGAATCTAATAGTTGA
37% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000105306.3
ENSMUST00000105307.8
3UTR CCA 72 bp AAAAGGGCCGCAACTCAAGAATTATTTGGAGTATTGTaGCACTTTACCAATCTCTTTTGCATATATATATAC +
Preference number: 3 (lower is better)
Translates to: KRAATQELFGVL*HFTNLFCIYIY
Trigger: GTATATATATATGCAAAAGAGATTGGTAAAGTGCCACAATACTCCAAATAATTCTTGAGTTGCGGCCCTTTT
35% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000105306.3
ENSMUST00000105307.8
CDS-3UTR CCA 90 bp CTAGATCATGGTCCTTGGCAGCAGGTGCCCATGGCTCCGGGGCACTGGAGGGGGCCCCGCTGGCGCTGCTaGCTGCGCTGCAAGGGCCAC +
Preference number: 4 (lower is better)
Translates to: LDHGPWQQVPMAPGHWRGPRWRC*LRCKGH
Trigger: GTGGCCCTTGCAGCGCAGCCAGCAGCGCCAGCGGGG...CCCCCTCCAGTGCCCCGGAGCCATGGGCACCTGCTGCCAAGGACCATGATCTAG
70% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000105307.8
CDS-3UTR CCA 90 bp CTAGATCATGGTCCTTGGCAGCAGGTGCCCATGGCTCCGGGGCACTGGAGGGGGCGGCGACGGCGGCGGTaGCTGTGGTTGGCGGGACTG +
Preference number: 4 (lower is better)
Translates to: LDHGPWQQVPMAPGHWRGRRRRR*LWLAGL
Trigger: CAGTCCCGCCAACCACAGCCACCGCCGCCGTCGCCG...CCCCCTCCAGTGCCCCGGAGCCATGGGCACCTGCTGCCAAGGACCATGATCTAG
70% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000105307.8
CDS-3UTR CCA 90 bp CTAGATCATGGTCCTTGGCAGCAGGTGCCCATGGCTCCGGGGCACTGGAGGGGGGAAAAGCTGCGGCGGTaGCCGGCATGCGCCACGGCC +
Preference number: 4 (lower is better)
Translates to: LDHGPWQQVPMAPGHWRGEKLRR*PACATA
Trigger: GGCCGTGGCGCATGCCGGCCACCGCCGCAGCTTTTC...CCCCCTCCAGTGCCCCGGAGCCATGGGCACCTGCTGCCAAGGACCATGATCTAG
69% GC, longest homopolymer 6 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000105306.3
ENSMUST00000105307.8
CDS-3UTR GCA 90 bp CTAGATCATGGTCCTTGGCAGCAGGTGCCCATGGCTCCGGGGCACTGGAGGGGGCGCAGGCTCAGGCGCTaGGCCTCTTTAGCGATGCGC +
Preference number: 4 (lower is better)
Translates to: LDHGPWQQVPMAPGHWRGRRLRR*ASLAMR
Trigger: GCGCATCGCTAAAGAGGCGCAGCGCCTGAGCCTGCG...CCCCCTCCAGTGCCCCGGAGCCATGGGCACCTGCTGCCAAGGACCATGATCTAG
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000105307.8
CDS-3UTR GCA 90 bp CTAGATCATGGTCCTTGGCAGCAGGTGCCCATGGCTCCGGGGCACTGGAGGGGGGGGCGGGGCTGTTTCTaGCAGGTCAGTCCCCTCAGC +
Preference number: 4 (lower is better)
Translates to: LDHGPWQQVPMAPGHWRGGRGCF*QVSPLS
Trigger: GCTGAGGGGACTGACCTGGCAGAAACAGCCCCGCCC...CCCCCTCCAGTGCCCCGGAGCCATGGGCACCTGCTGCCAAGGACCATGATCTAG
67% GC, longest homopolymer 8 nt, total homopolymer stretches 20 nt.
Matches the following 2 transcripts:
ENSMUST00000105306.3
ENSMUST00000105307.8
3UTR CAA 72 bp AGCAGGTGCCCATGGCTCCGGGGCACTGGAGGGGGCTaGGTTGCTGTGAGTTGGCCTGCAGGTTCTGGCCTC +
Preference number: 4 (lower is better)
Translates to: SRCPWLRGTGGG*VAVSWPAGSGL
Trigger: GAGGCCAGAACCTGCAGGCCAACTCACAGCAACCAAGCCCCCTCCAGTGCCCCGGAGCCATGGGCACCTGCT
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000105306.3
ENSMUST00000105307.8
CDS-3UTR GCA 90 bp CTAGATCATGGTCCTTGGCAGCAGGTGCCCATGGCTCCGGGGCACTGGAGGGGGGTTTGGCCTTGCTGTTaGGGCTGGCACACAAGGGGG +
Preference number: 4 (lower is better)
Translates to: LDHGPWQQVPMAPGHWRGVWPCC*GWHTRG
Trigger: CCCCCTTGTGTGCCAGCCGCAACAGCAAGGCCAAAC...CCCCCTCCAGTGCCCCGGAGCCATGGGCACCTGCTGCCAAGGACCATGATCTAG
64% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000105306.3
ENSMUST00000105307.8
CDS-3UTR GCA 90 bp CTAGATCATGGTCCTTGGCAGCAGGTGCCCATGGCTCCGGGGCACTGGAGGGGGTCGTTGTTGACCGTGTaGTCCAGGGTCTCCACGGTG +
Preference number: 4 (lower is better)
Translates to: LDHGPWQQVPMAPGHWRGSLLTV*SRVSTV
Trigger: CACCGTGGAGACCCTGGAGCACACGGTCAACAACGA...CCCCCTCCAGTGCCCCGGAGCCATGGGCACCTGCTGCCAAGGACCATGATCTAG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000105307.8
CDS-3UTR CCA 90 bp CTAGATCATGGTCCTTGGCAGCAGGTGCCCATGGCTCCGGGGCACTGGAGGGGGTTGAGGGGCTGTAGATaGTGCATCGCCCGGGACACA +
Preference number: 4 (lower is better)
Translates to: LDHGPWQQVPMAPGHWRGLRGCR*CIARDT
Trigger: TGTGTCCCGGGCGATGCACCATCTACAGCCCCTCAA...CCCCCTCCAGTGCCCCGGAGCCATGGGCACCTGCTGCCAAGGACCATGATCTAG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000105307.8
CDS-3UTR GCA 90 bp TGTGAGTTGGCCTGCAGGTTCTGGCCTCTGCTACAATCTAACCTGCAGACGCGTGCTGGCGCTGCTGGCTaGGCTGCAAGGGCCACCGCT +
Preference number: 4 (lower is better)
Translates to: CELACRFWPLLQSNLQTRAGAAG*AARATA
Trigger: AGCGGTGGCCCTTGCAGCGCAGCCAGCAGCGCCAGC...ACGCGTCTGCAGGTTAGATTGTAGCAGAGGCCAGAACCTGCAGGCCAACTCACA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000105307.8
CDS-3UTR GCA 90 bp GTCCAGAGAGTGTTCGACATCCACAGAGAACCAGCTGGGTTAGAGAGCAGCATCCGGCGGTGGCCGGCATaGGCCACGGCCACTCGGATC +
Preference number: 4 (lower is better)
Translates to: VQRVFDIHREPAGLESSIRRWPA*ATATRI
Trigger: GATCCGAGTGGCCGTGGCGCATGCCGGCCACCGCCG...GATGCTGCTCTCTAACCCAGCTGGTTCTCTGTGGATGTCGAACACTCTCTGGAC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000105306.3
ENSMUST00000105307.8
CDS-3UTR GCA 90 bp CTAGATCATGGTCCTTGGCAGCAGGTGCCCATGGCTCCGGGGCACTGGAGGGGGAGCAAAGACACTGCCTaGTTCACCAGGTCGGTCCGT +
Preference number: 4 (lower is better)
Translates to: LDHGPWQQVPMAPGHWRGSKDTA*FTRSVR
Trigger: ACGGACCGACCTGGTGAAGCAGGCAGTGTCTTTGCT...CCCCCTCCAGTGCCCCGGAGCCATGGGCACCTGCTGCCAAGGACCATGATCTAG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000105306.3
ENSMUST00000105307.8
CDS-3UTR CCA 90 bp TGTGAGTTGGCCTGCAGGTTCTGGCCTCTGCTACAATCTAACCTGCAGACGCGTGAAAAGCTGCGGCGGTaGCCGGCATGCGCCACGGCC +
Preference number: 4 (lower is better)
Translates to: CELACRFWPLLQSNLQTREKLRR*PACATA
Trigger: GGCCGTGGCGCATGCCGGCCACCGCCGCAGCTTTTC...ACGCGTCTGCAGGTTAGATTGTAGCAGAGGCCAGAACCTGCAGGCCAACTCACA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000105306.3
ENSMUST00000105307.8
CDS-3UTR TCA 90 bp CTAGATCATGGTCCTTGGCAGCAGGTGCCCATGGCTCCGGGGCACTGGAGGGGGCTGGAGGGGAGTTTCTaGATAGTTCTCCTCGCCATG +
Preference number: 4 (lower is better)
Translates to: LDHGPWQQVPMAPGHWRGLEGSF*IVLLAM
Trigger: CATGGCGAGGAGAACTATTCAGAAACTCCCCTCCAG...CCCCCTCCAGTGCCCCGGAGCCATGGGCACCTGCTGCCAAGGACCATGATCTAG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000105306.3
ENSMUST00000105307.8
CDS-3UTR GCA 90 bp CTAGATCATGGTCCTTGGCAGCAGGTGCCCATGGCTCCGGGGCACTGGAGGGGGGCTGAGCGAGCAGTTTaGGGAACACATTCCTGTGTC +
Preference number: 4 (lower is better)
Translates to: LDHGPWQQVPMAPGHWRGAERAV*GTHSCV
Trigger: GACACAGGAATGTGTTCCGCAAACTGCTCGCTCAGC...CCCCCTCCAGTGCCCCGGAGCCATGGGCACCTGCTGCCAAGGACCATGATCTAG
61% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000105306.3
ENSMUST00000105307.8
CDS-3UTR CCA 90 bp GTCCAGAGAGTGTTCGACATCCACAGAGAACCAGCTGGGTTAGAGAGCAGCATCGGCCAGAACCGGAGCTaGAGCCAGGGCCAGGACCGC +
Preference number: 4 (lower is better)
Translates to: VQRVFDIHREPAGLESSIGQNRS*SQGQDR
Trigger: GCGGTCCTGGCCCTGGCTCCAGCTCCGGTTCTGGCC...GATGCTGCTCTCTAACCCAGCTGGTTCTCTGTGGATGTCGAACACTCTCTGGAC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000105307.8
CDS-3UTR CCA 90 bp TTTGTGGTGCCAATGCAGAAGGGAGCCAGAAACCTTGCTCCTGGGGACCATTGCGCTCTCCCGGCTTGCTaGGCCGCTGTGGGTCTCGGT +
Preference number: 4 (lower is better)
Translates to: FVVPMQKGARNLAPGDHCALPAC*AAVGLG
Trigger: ACCGAGACCCACAGCGGCCCAGCAAGCCGGGAGAGC...GCAATGGTCCCCAGGAGCAAGGTTTCTGGCTCCCTTCTGCATTGGCACCACAAA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000105307.8
CDS-3UTR GCA 90 bp TTTGTGTTTTTGTGGTGCCAATGCAGAAGGGAGCCAGAAACCTTGCTCCTGGGGTGTGGTTGGCGGGACTaGGGTCGCCGCCGTGGCTGG +
Preference number: 4 (lower is better)
Translates to: FVFLWCQCRREPETLLLGCGWRD*GRRRGW
Trigger: CCAGCCACGGCGGCGACCGCAGTCCCGCCAACCACA...CCCCAGGAGCAAGGTTTCTGGCTCCCTTCTGCATTGGCACCACAAAAACACAAA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000105307.8
CDS-3UTR GCA 90 bp GTGTGTCACTCTTGTGTCTGTGACTTGGTTGTCACCTCAAGCAGTTGCTCCCATCGGCGGTGGCCGGCATaGGCCACGGCCACTCGGATC +
Preference number: 4 (lower is better)
Translates to: VCHSCVCDLVVTSSSCSHRRWPA*ATATRI
Trigger: GATCCGAGTGGCCGTGGCGCATGCCGGCCACCGCCG...ATGGGAGCAACTGCTTGAGGTGACAACCAAGTCACAGACACAAGAGTGACACAC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000105306.3
ENSMUST00000105307.8
CDS-3UTR GCA 90 bp CTAGATCATGGTCCTTGGCAGCAGGTGCCCATGGCTCCGGGGCACTGGAGGGGGCTGGAAACTCCTGAGTaGGAGAGCCTTTGGAGACAT +
Preference number: 4 (lower is better)
Translates to: LDHGPWQQVPMAPGHWRGLETPE*ESLWRH
Trigger: ATGTCTCCAAAGGCTCTCGCACTCAGGAGTTTCCAG...CCCCCTCCAGTGCCCCGGAGCCATGGGCACCTGCTGCCAAGGACCATGATCTAG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000105306.3
CDS-3UTR CCA 90 bp TGTGAGTTGGCCTGCAGGTTCTGGCCTCTGCTACAATCTAACCTGCAGACGCGTAGCAGCCGGGCGGCTTaGCGGACATCGTCGCTATCC +
Preference number: 4 (lower is better)
Translates to: CELACRFWPLLQSNLQTRSSRAA*RTSSLS
Trigger: GGATAGCGACGATGTCCGCCAAGCCGCCCGGCTGCT...ACGCGTCTGCAGGTTAGATTGTAGCAGAGGCCAGAACCTGCAGGCCAACTCACA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000105306.3
ENSMUST00000105307.8
CDS-3UTR CCA 90 bp TGTGAGTTGGCCTGCAGGTTCTGGCCTCTGCTACAATCTAACCTGCAGACGCGTTCGTCCGCCTTGAGCTaGCGCGGCTCGCAGTCCACT +
Preference number: 4 (lower is better)
Translates to: CELACRFWPLLQSNLQTRSSALS*RGSQST
Trigger: AGTGGACTGCGAGCCGCGCCAGCTCAAGGCGGACGA...ACGCGTCTGCAGGTTAGATTGTAGCAGAGGCCAGAACCTGCAGGCCAACTCACA
60% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000105306.3
ENSMUST00000105307.8
CDS-3UTR CCA 90 bp CTAGATCATGGTCCTTGGCAGCAGGTGCCCATGGCTCCGGGGCACTGGAGGGGGTCCTTGAGCAAACACTaGATGAGAGGTCTGCGGTGT +
Preference number: 4 (lower is better)
Translates to: LDHGPWQQVPMAPGHWRGSLSKH*MRGLRC
Trigger: ACACCGCAGACCTCTCATCCAGTGTTTGCTCAAGGA...CCCCCTCCAGTGCCCCGGAGCCATGGGCACCTGCTGCCAAGGACCATGATCTAG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000105306.3
ENSMUST00000105307.8
CDS-3UTR TCA 90 bp GTGTGTCACTCTTGTGTCTGTGACTTGGTTGTCACCTCAAGCAGTTGCTCCCATAACCGCGAGCAGTGCTaGCCGGCGCAGTCCAGCCCC +
Preference number: 4 (lower is better)
Translates to: VCHSCVCDLVVTSSSCSHNREQC*PAQSSP
Trigger: GGGGCTGGACTGCGCCGGTCAGCACTGCTCGCGGTT...ATGGGAGCAACTGCTTGAGGTGACAACCAAGTCACAGACACAAGAGTGACACAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000105307.8
CDS-3UTR TCA 90 bp TTTGTGGTGCCAATGCAGAAGGGAGCCAGAAACCTTGCTCCTGGGGACCATTGCCTCGGATCCACTCCATaGGAGGGGGCAGCACGAGGA +
Preference number: 4 (lower is better)
Translates to: FVVPMQKGARNLAPGDHCLGSTP*EGAARG
Trigger: TCCTCGTGCTGCCCCCTCTCATGGAGTGGATCCGAG...GCAATGGTCCCCAGGAGCAAGGTTTCTGGCTCCCTTCTGCATTGGCACCACAAA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000105306.3
ENSMUST00000105307.8
CDS-3UTR TCA 90 bp TGTGAGTTGGCCTGCAGGTTCTGGCCTCTGCTACAATCTAACCTGCAGACGCGTGGGGCAGGCCTTGGGTaGCTAGCTCCTCTGTGTACT +
Preference number: 4 (lower is better)
Translates to: CELACRFWPLLQSNLQTRGAGLG*LAPLCT
Trigger: AGTACACAGAGGAGCTAGTCACCCAAGGCCTGCCCC...ACGCGTCTGCAGGTTAGATTGTAGCAGAGGCCAGAACCTGCAGGCCAACTCACA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000105306.3
ENSMUST00000105307.8
CDS-3UTR GCA 90 bp CTAGATCATGGTCCTTGGCAGCAGGTGCCCATGGCTCCGGGGCACTGGAGGGGGTTGTCGTACAGGAGCTaGTTGAACGCTTCGTTTTCA +
Preference number: 4 (lower is better)
Translates to: LDHGPWQQVPMAPGHWRGLSYRS*LNASFS
Trigger: TGAAAACGAAGCGTTCAAGCAGCTCCTGTACGACAA...CCCCCTCCAGTGCCCCGGAGCCATGGGCACCTGCTGCCAAGGACCATGATCTAG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000105306.3
ENSMUST00000105307.8
CDS-3UTR CCA 90 bp TGTGAGTTGGCCTGCAGGTTCTGGCCTCTGCTACAATCTAACCTGCAGACGCGTTGTGCCGGCTGTGCATaGAGTCAGCTAAAGGCGGCC +
Preference number: 4 (lower is better)
Translates to: CELACRFWPLLQSNLQTRCAGCA*SQLKAA
Trigger: GGCCGCCTTTAGCTGACTCCATGCACAGCCGGCACA...ACGCGTCTGCAGGTTAGATTGTAGCAGAGGCCAGAACCTGCAGGCCAACTCACA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000105307.8
CDS-3UTR CCA 90 bp TTTGTGTTTTTGTGGTGCCAATGCAGAAGGGAGCCAGAAACCTTGCTCCTGGGGGTCAGAGCCGTCCAATaGCGGGTCTCGGGGTGGACG +
Preference number: 4 (lower is better)
Translates to: FVFLWCQCRREPETLLLGVRAVQ*RVSGWT
Trigger: CGTCCACCCCGAGACCCGCCATTGGACGGCTCTGAC...CCCCAGGAGCAAGGTTTCTGGCTCCCTTCTGCATTGGCACCACAAAAACACAAA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000105306.3
ENSMUST00000105307.8
CDS-3UTR CCA 90 bp TTTGTGGTGCCAATGCAGAAGGGAGCCAGAAACCTTGCTCCTGGGGACCATTGCCAGAGCCTTCCACCTTaGCCCCAGCATCCAGGAGGA +
Preference number: 4 (lower is better)
Translates to: FVVPMQKGARNLAPGDHCQSLPP*PQHPGG
Trigger: TCCTCCTGGATGCTGGGGCCAAGGTGGAAGGCTCTG...GCAATGGTCCCCAGGAGCAAGGTTTCTGGCTCCCTTCTGCATTGGCACCACAAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000105306.3
ENSMUST00000105307.8
CDS-3UTR TCA 90 bp TTTGTGGTGCCAATGCAGAAGGGAGCCAGAAACCTTGCTCCTGGGGACCATTGCGTTCGCTCATGGTGTTaGTTCCATCCGGCCCCAGCA +
Preference number: 4 (lower is better)
Translates to: FVVPMQKGARNLAPGDHCVRSWC*FHPAPA
Trigger: TGCTGGGGCCGGATGGAATCAACACCATGAGCGAAC...GCAATGGTCCCCAGGAGCAAGGTTTCTGGCTCCCTTCTGCATTGGCACCACAAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000105306.3
ENSMUST00000105307.8
CDS-3UTR TCA 90 bp TTGTGTTTTTGTGGTGCCAATGCAGAAGGGAGCCAGAAACCTTGCTCCTGGGGAGTCCTCTGTAGGTCCTaGAGCACATCCTGGCCCGCC +
Preference number: 4 (lower is better)
Translates to: LCFCGANAEGSQKPCSWGVLCRS*STSWPA
Trigger: GGCGGGCCAGGATGTGCTTCAGGACCTACAGAGGAC...TCCCCAGGAGCAAGGTTTCTGGCTCCCTTCTGCATTGGCACCACAAAAACACAA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000105306.3
ENSMUST00000105307.8
CDS-3UTR GCA 90 bp TTTGTGTTTTTGTGGTGCCAATGCAGAAGGGAGCCAGAAACCTTGCTCCTGGGGCGCTGTGGGTCTCGGTaGAGGTTCAGGCTCTCTGGC +
Preference number: 4 (lower is better)
Translates to: FVFLWCQCRREPETLLLGRCGSR*RFRLSG
Trigger: GCCAGAGAGCCTGAACCTGCACCGAGACCCACAGCG...CCCCAGGAGCAAGGTTTCTGGCTCCCTTCTGCATTGGCACCACAAAAACACAAA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000105307.8
CDS-3UTR GCA 90 bp GTCCAGAGAGTGTTCGACATCCACAGAGAACCAGCTGGGTTAGAGAGCAGCATCCAGCATCTGCACCATTaGCTCGTCCCCACGGACGCA +
Preference number: 4 (lower is better)
Translates to: VQRVFDIHREPAGLESSIQHLHH*LVPTDA
Trigger: TGCGTCCGTGGGGACGAGGCAATGGTGCAGATGCTG...GATGCTGCTCTCTAACCCAGCTGGTTCTCTGTGGATGTCGAACACTCTCTGGAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000105306.3
ENSMUST00000105307.8
CDS-3UTR GCA 90 bp GTGTGTCACTCTTGTGTCTGTGACTTGGTTGTCACCTCAAGCAGTTGCTCCCATGGGCGGGGCTGTTTCTaGCAGGTCAGTCCCCTCAGC +
Preference number: 4 (lower is better)
Translates to: VCHSCVCDLVVTSSSCSHGRGCF*QVSPLS
Trigger: GCTGAGGGGACTGACCTGGCAGAAACAGCCCCGCCC...ATGGGAGCAACTGCTTGAGGTGACAACCAAGTCACAGACACAAGAGTGACACAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000105306.3
ENSMUST00000105307.8
CDS-3UTR CCA 90 bp ACCAGGAACAATTTTTGTGTTTTTGTGGTGCCAATGCAGAAGGGAGCCAGAAACTGGCCAGCGCGTCCTTaGGCAGGCTGCCGGGGACCG +
Preference number: 4 (lower is better)
Translates to: TRNNFCVFVVPMQKGARNWPARP*AGCRGP
Trigger: CGGTCCCCGGCAGCCTGCCCAAGGACGCGCTGGCCA...GTTTCTGGCTCCCTTCTGCATTGGCACCACAAAAACACAAAAATTGTTCCTGGT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000105307.8
CDS-3UTR CCA 90 bp TTGTGTTTTTGTGGTGCCAATGCAGAAGGGAGCCAGAAACCTTGCTCCTGGGGACCAGCATCGAGAGCTTaGCCAGCGCGTCCTTGGGCA +
Preference number: 4 (lower is better)
Translates to: LCFCGANAEGSQKPCSWGPASRA*PARPWA
Trigger: TGCCCAAGGACGCGCTGGCCAAGCTCTCGATGCTGG...TCCCCAGGAGCAAGGTTTCTGGCTCCCTTCTGCATTGGCACCACAAAAACACAA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000105307.8
CDS-3UTR CCA 90 bp GTCCAGAGAGTGTTCGACATCCACAGAGAACCAGCTGGGTTAGAGAGCAGCATCGGCGTGCCATTACCGTaGTGCTTCGCATTGAGGGGC +
Preference number: 4 (lower is better)
Translates to: VQRVFDIHREPAGLESSIGVPLP*CFALRG
Trigger: GCCCCTCAATGCGAAGCACCACGGTAATGGCACGCC...GATGCTGCTCTCTAACCCAGCTGGTTCTCTGTGGATGTCGAACACTCTCTGGAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000105307.8
CDS-3UTR CCA 90 bp GTGTGTCACTCTTGTGTCTGTGACTTGGTTGTCACCTCAAGCAGTTGCTCCCATCGTGTACAGGGCCTCTaGCTCCCAGTAGAGCGCCCC +
Preference number: 4 (lower is better)
Translates to: VCHSCVCDLVVTSSSCSHRVQGL*LPVERP
Trigger: GGGGCGCTCTACTGGGAGCCAGAGGCCCTGTACACG...ATGGGAGCAACTGCTTGAGGTGACAACCAAGTCACAGACACAAGAGTGACACAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000105307.8
CDS-3UTR CCA 90 bp TGTGAGTTGGCCTGCAGGTTCTGGCCTCTGCTACAATCTAACCTGCAGACGCGTGCACGAGGAAGGGCCTaGAAACTCCTGAGTGCGAGA +
Preference number: 4 (lower is better)
Translates to: CELACRFWPLLQSNLQTRARGRA*KLLSAR
Trigger: TCTCGCACTCAGGAGTTTCCAGGCCCTTCCTCGTGC...ACGCGTCTGCAGGTTAGATTGTAGCAGAGGCCAGAACCTGCAGGCCAACTCACA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000105306.3
CDS-3UTR CCA 90 bp GTCCAGAGAGTGTTCGACATCCACAGAGAACCAGCTGGGTTAGAGAGCAGCATCTCAGGGCCCTCAGTTTaGCCTTGCTGTTGCGGCTGG +
Preference number: 4 (lower is better)
Translates to: VQRVFDIHREPAGLESSISGPSV*PCCCGW
Trigger: CCAGCCGCAACAGCAAGGCCAAACTGAGGGCCCTGA...GATGCTGCTCTCTAACCCAGCTGGTTCTCTGTGGATGTCGAACACTCTCTGGAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000105306.3
ENSMUST00000105307.8
CDS-3UTR CCA 90 bp GTCCAGAGAGTGTTCGACATCCACAGAGAACCAGCTGGGTTAGAGAGCAGCATCCAGCGCTGTGATACATaGCCTCCCTCAGGGCCCTCA +
Preference number: 4 (lower is better)
Translates to: VQRVFDIHREPAGLESSIQRCDT*PPSGPS
Trigger: TGAGGGCCCTGAGGGAGGCCATGTATCACAGCGCTG...GATGCTGCTCTCTAACCCAGCTGGTTCTCTGTGGATGTCGAACACTCTCTGGAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000105306.3
ENSMUST00000105307.8
CDS-3UTR TCA 90 bp TTTGTGTTTTTGTGGTGCCAATGCAGAAGGGAGCCAGAAACCTTGCTCCTGGGGTACGGGGACGCCGGGTaGGAGTCAGAACAGCACAGA +
Preference number: 4 (lower is better)
Translates to: FVFLWCQCRREPETLLLGYGDAG*ESEQHR
Trigger: TCTGTGCTGTTCTGACTCTCACCCGGCGTCCCCGTA...CCCCAGGAGCAAGGTTTCTGGCTCCCTTCTGCATTGGCACCACAAAAACACAAA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000105307.8
CDS-3UTR TCA 90 bp GTCCAGAGAGTGTTCGACATCCACAGAGAACCAGCTGGGTTAGAGAGCAGCATCCGTTCTTCCCACAGATaGGGTGCTGGTAGGGCTGCA +
Preference number: 4 (lower is better)
Translates to: VQRVFDIHREPAGLESSIRSSHR*GAGRAA
Trigger: TGCAGCCCTACCAGCACCTCATCTGTGGGAAGAACG...GATGCTGCTCTCTAACCCAGCTGGTTCTCTGTGGATGTCGAACACTCTCTGGAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000105307.8
CDS-3UTR TCA 90 bp TTTGTGGTGCCAATGCAGAAGGGAGCCAGAAACCTTGCTCCTGGGGACCATTGCAGCCCAAGTCCTGCTTaGACTTGGCTTCGATGGCCA +
Preference number: 4 (lower is better)
Translates to: FVVPMQKGARNLAPGDHCSPSPA*TWLRWP
Trigger: TGGCCATCGAAGCCAAGTTCAAGCAGGACTTGGGCT...GCAATGGTCCCCAGGAGCAAGGTTTCTGGCTCCCTTCTGCATTGGCACCACAAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000105306.3
ENSMUST00000105307.8
CDS-3UTR TCA 90 bp GTGTGTCACTCTTGTGTCTGTGACTTGGTTGTCACCTCAAGCAGTTGCTCCCATGTCCTCTGTAGGTCCTaGAGCACATCCTGGCCCGCC +
Preference number: 4 (lower is better)
Translates to: VCHSCVCDLVVTSSSCSHVLCRS*STSWPA
Trigger: GGCGGGCCAGGATGTGCTTCAGGACCTACAGAGGAC...ATGGGAGCAACTGCTTGAGGTGACAACCAAGTCACAGACACAAGAGTGACACAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000105306.3
ENSMUST00000105307.8
CDS-3UTR CCA 90 bp TTTGTGTTTTTGTGGTGCCAATGCAGAAGGGAGCCAGAAACCTTGCTCCTGGGGAGCGCCCCCTGCTTGTaGTGCATGGGCGTGCCATTA +
Preference number: 4 (lower is better)
Translates to: FVFLWCQCRREPETLLLGSAPCL*CMGVPL
Trigger: TAATGGCACGCCCATGCACCACAAGCAGGGGGCGCT...CCCCAGGAGCAAGGTTTCTGGCTCCCTTCTGCATTGGCACCACAAAAACACAAA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000105307.8
3UTR CAA 72 bp AAGAGAGAGGCCTCGGGGGCCTGCATCACAAAGGAGTaGATGCTGCAGATAGACTCAGACTGGGTACCTTGC +
Preference number: 4 (lower is better)
Translates to: KREASGACITKE*MLQIDSDWVPC
Trigger: GCAAGGTACCCAGTCTGAGTCTATCTGCAGCATCAACTCCTTTGTGATGCAGGCCCCCGAGGCCTCTCTCTT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000105306.3
ENSMUST00000105307.8
CDS-3UTR TCA 90 bp GTCCAGAGAGTGTTCGACATCCACAGAGAACCAGCTGGGTTAGAGAGCAGCATCCCACCAGGGCAGTGTTaGCGGTGTCAAAGCTGTTGT +
Preference number: 4 (lower is better)
Translates to: VQRVFDIHREPAGLESSIPPGQC*RCQSCC
Trigger: ACAACAGCTTTGACACCGTCAACACTGCCCTGGTGG...GATGCTGCTCTCTAACCCAGCTGGTTCTCTGTGGATGTCGAACACTCTCTGGAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000105307.8
CDS-3UTR TCA 90 bp GTCCAGAGAGTGTTCGACATCCACAGAGAACCAGCTGGGTTAGAGAGCAGCATCTTTCCGAGTCGTTGTTaGCCGTGTGCTCCAGGGTCT +
Preference number: 4 (lower is better)
Translates to: VQRVFDIHREPAGLESSIFPSRC*PCAPGS
Trigger: AGACCCTGGAGCACACGGTCAACAACGACTCGGAAA...GATGCTGCTCTCTAACCCAGCTGGTTCTCTGTGGATGTCGAACACTCTCTGGAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000105307.8
CDS-3UTR TCA 90 bp GTGTGTCACTCTTGTGTCTGTGACTTGGTTGTCACCTCAAGCAGTTGCTCCCATGGGGCAGGCCTTGGGTaGCTAGCTCCTCTGTGTACT +
Preference number: 4 (lower is better)
Translates to: VCHSCVCDLVVTSSSCSHGAGLG*LAPLCT
Trigger: AGTACACAGAGGAGCTAGTCACCCAAGGCCTGCCCC...ATGGGAGCAACTGCTTGAGGTGACAACCAAGTCACAGACACAAGAGTGACACAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000105306.3
ENSMUST00000105307.8
CDS-3UTR GCA 90 bp TTTGTGTTTTTGTGGTGCCAATGCAGAAGGGAGCCAGAAACCTTGCTCCTGGGGGGATCTCGTACTTGGTaGACTTGGCGAAGCGCAGGC +
Preference number: 4 (lower is better)
Translates to: FVFLWCQCRREPETLLLGGSRTW*TWRSAG
Trigger: GCCTGCGCTTCGCCAAGTGCACCAAGTACGAGATCC...CCCCAGGAGCAAGGTTTCTGGCTCCCTTCTGCATTGGCACCACAAAAACACAAA
54% GC, longest homopolymer 6 nt, total homopolymer stretches 11 nt.
Matches the following 1 transcripts:
ENSMUST00000105307.8
CDS-3UTR GCA 90 bp ACCAGGAACAATTTTTGTGTTTTTGTGGTGCCAATGCAGAAGGGAGCCAGAAACCGGCATGCTCGTGGATaGGCAGCGCCACGCGGCTGT +
Preference number: 4 (lower is better)
Translates to: TRNNFCVFVVPMQKGARNRHARG*AAPRGC
Trigger: ACAGCCGCGTGGCGCTGCGCATCCACGAGCATGCCG...GTTTCTGGCTCCCTTCTGCATTGGCACCACAAAAACACAAAAATTGTTCCTGGT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000105307.8
CDS-3UTR GCA 90 bp GCTCTGAGATTAATAGTAGATTCTCTGACGTGCTCCCCCACCCCCACTCAGTTAGTGGCCAGCAGGGACTaGTCGATGGTCCTCAGCTCT +
Preference number: 4 (lower is better)
Translates to: ALRLIVDSLTCSPTPTQLVASRD*SMVLSS
Trigger: AGAGCTGAGGACCATCGAGCAGTCCCTGCTGGCCAC...TAACTGAGTGGGGGTGGGGGAGCACGTCAGAGAATCTACTATTAATCTCAGAGC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000105307.8
CDS-3UTR GCA 90 bp GCTCTGAGATTAATAGTAGATTCTCTGACGTGCTCCCCCACCCCCACTCAGTTACAGCATCTGCACCATTaGCTCGTCCCCACGGACGCA +
Preference number: 4 (lower is better)
Translates to: ALRLIVDSLTCSPTPTQLQHLHH*LVPTDA
Trigger: TGCGTCCGTGGGGACGAGGCAATGGTGCAGATGCTG...TAACTGAGTGGGGGTGGGGGAGCACGTCAGAGAATCTACTATTAATCTCAGAGC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000105306.3
ENSMUST00000105307.8
CDS-3UTR GCA 90 bp TTTGTGTTTTTGTGGTGCCAATGCAGAAGGGAGCCAGAAACCTTGCTCCTGGGGGCATCCAGCAGCATCTaGACCATTGCCTCGTCCCCA +
Preference number: 4 (lower is better)
Translates to: FVFLWCQCRREPETLLLGASSSI*TIASSP
Trigger: TGGGGACGAGGCAATGGTGCAGATGCTGCTGGATGC...CCCCAGGAGCAAGGTTTCTGGCTCCCTTCTGCATTGGCACCACAAAAACACAAA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000105306.3
ENSMUST00000105307.8
CDS-3UTR CCA 90 bp GTGTGTCACTCTTGTGTCTGTGACTTGGTTGTCACCTCAAGCAGTTGCTCCCATAGCAACTCCAGTTCCTaGAGGGTCCAGGGGACCTCG +
Preference number: 4 (lower is better)
Translates to: VCHSCVCDLVVTSSSCSHSNSSS*RVQGTS
Trigger: CGAGGTCCCCTGGACCCTCCAGGAACTGGAGTTGCT...ATGGGAGCAACTGCTTGAGGTGACAACCAAGTCACAGACACAAGAGTGACACAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000105307.8
CDS-3UTR CCA 90 bp ACCAGGAACAATTTTTGTGTTTTTGTGGTGCCAATGCAGAAGGGAGCCAGAAACGGTGGTGATGATGGTTaGCGGCGACGGCGGCGGTGG +
Preference number: 4 (lower is better)
Translates to: TRNNFCVFVVPMQKGARNGGDDG*RRRRRW
Trigger: CCACCGCCGCCGTCGCCGCCAACCATCATCACCACC...GTTTCTGGCTCCCTTCTGCATTGGCACCACAAAAACACAAAAATTGTTCCTGGT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000105307.8
CDS-3UTR CCA 90 bp GTGTGTCACTCTTGTGTCTGTGACTTGGTTGTCACCTCAAGCAGTTGCTCCCATCAGAGCCTTCCACCTTaGCCCCAGCATCCAGGAGGA +
Preference number: 4 (lower is better)
Translates to: VCHSCVCDLVVTSSSCSHQSLPP*PQHPGG
Trigger: TCCTCCTGGATGCTGGGGCCAAGGTGGAAGGCTCTG...ATGGGAGCAACTGCTTGAGGTGACAACCAAGTCACAGACACAAGAGTGACACAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000105306.3
ENSMUST00000105307.8
CDS-3UTR CCA 90 bp TTTGTGGTGCCAATGCAGAAGGGAGCCAGAAACCTTGCTCCTGGGGACCATTGCCCATGGGCTGCGGCCTaGCTGAAAGAGTTCATATCA +
Preference number: 4 (lower is better)
Translates to: FVVPMQKGARNLAPGDHCPWAAA*LKEFIS
Trigger: TGATATGAACTCTTTCAGCCAGGCCGCAGCCCATGG...GCAATGGTCCCCAGGAGCAAGGTTTCTGGCTCCCTTCTGCATTGGCACCACAAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000105306.3
ENSMUST00000105307.8
CDS-3UTR CCA 90 bp GTCCAGAGAGTGTTCGACATCCACAGAGAACCAGCTGGGTTAGAGAGCAGCATCGCTCTTCTCCTTCTCTaGCTGAGCGAGCAGTTTGCG +
Preference number: 4 (lower is better)
Translates to: VQRVFDIHREPAGLESSIALLLL*LSEQFA
Trigger: CGCAAACTGCTCGCTCAGCCAGAGAAGGAGAAGAGC...GATGCTGCTCTCTAACCCAGCTGGTTCTCTGTGGATGTCGAACACTCTCTGGAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000105306.3
ENSMUST00000105307.8
CDS-3UTR CCA 90 bp GCTCTGAGATTAATAGTAGATTCTCTGACGTGCTCCCCCACCCCCACTCAGTTACAGCGCTGTGATACATaGCCTCCCTCAGGGCCCTCA +
Preference number: 4 (lower is better)
Translates to: ALRLIVDSLTCSPTPTQLQRCDT*PPSGPS
Trigger: TGAGGGCCCTGAGGGAGGCCATGTATCACAGCGCTG...TAACTGAGTGGGGGTGGGGGAGCACGTCAGAGAATCTACTATTAATCTCAGAGC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000105306.3
ENSMUST00000105307.8
CDS-3UTR TCA 90 bp GCTCTGAGATTAATAGTAGATTCTCTGACGTGCTCCCCCACCCCCACTCAGTTACCAGGGTCTCCACGGTaGATTTGGGCGCTTCGTGAA +
Preference number: 4 (lower is better)
Translates to: ALRLIVDSLTCSPTPTQLPGSPR*IWALRE
Trigger: TTCACGAAGCGCCCAAATTCACCGTGGAGACCCTGG...TAACTGAGTGGGGGTGGGGGAGCACGTCAGAGAATCTACTATTAATCTCAGAGC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000105307.8
CDS-3UTR TCA 90 bp GTCCAGAGAGTGTTCGACATCCACAGAGAACCAGCTGGGTTAGAGAGCAGCATCACCTGGGAGAGGCTGTaGACAAGAGCACTTTGTGAG +
Preference number: 4 (lower is better)
Translates to: VQRVFDIHREPAGLESSITWERL*TRALCE
Trigger: CTCACAAAGTGCTCTTGTTCACAGCCTCTCCCAGGT...GATGCTGCTCTCTAACCCAGCTGGTTCTCTGTGGATGTCGAACACTCTCTGGAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000105306.3
ENSMUST00000105307.8
CDS-3UTR GCA 90 bp TTGTGTTTTTGTGGTGCCAATGCAGAAGGGAGCCAGAAACCTTGCTCCTGGGGAGTGCCATTACCGTGGTaGTTCGCATTGAGGGGCTGT +
Preference number: 4 (lower is better)
Translates to: LCFCGANAEGSQKPCSWGVPLPW*FALRGC
Trigger: ACAGCCCCTCAATGCGAAGCACCACGGTAATGGCAC...TCCCCAGGAGCAAGGTTTCTGGCTCCCTTCTGCATTGGCACCACAAAAACACAA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000105307.8
CDS-3UTR GCA 90 bp GCTCTGAGATTAATAGTAGATTCTCTGACGTGCTCCCCCACCCCCACTCAGTTACCCCAGCAAAGACACTaGCTGCTTCACCAGGTCGGT +
Preference number: 4 (lower is better)
Translates to: ALRLIVDSLTCSPTPTQLPQQRH*LLHQVG
Trigger: ACCGACCTGGTGAAGCAGGCAGTGTCTTTGCTGGGG...TAACTGAGTGGGGGTGGGGGAGCACGTCAGAGAATCTACTATTAATCTCAGAGC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000105306.3
ENSMUST00000105307.8
CDS-3UTR GCA 90 bp GTGTGTCACTCTTGTGTCTGTGACTTGGTTGTCACCTCAAGCAGTTGCTCCCATCCTGTGTCCATGGGCTaGGGCCTGGCTGAAAGAGTT +
Preference number: 4 (lower is better)
Translates to: VCHSCVCDLVVTSSSCSHPVSMG*GLAERV
Trigger: AACTCTTTCAGCCAGGCCGCAGCCCATGGACACAGG...ATGGGAGCAACTGCTTGAGGTGACAACCAAGTCACAGACACAAGAGTGACACAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000105306.3
ENSMUST00000105307.8
CDS-3UTR GCA 90 bp GCTCTGAGATTAATAGTAGATTCTCTGACGTGCTCCCCCACCCCCACTCAGTTACCCTCAGTTTGGCCTTaGTGTTGCGGCTGGCACACA +
Preference number: 4 (lower is better)
Translates to: ALRLIVDSLTCSPTPTQLPSVWP*CCGWHT
Trigger: TGTGTGCCAGCCGCAACAGCAAGGCCAAACTGAGGG...TAACTGAGTGGGGGTGGGGGAGCACGTCAGAGAATCTACTATTAATCTCAGAGC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000105306.3
ENSMUST00000105307.8
CDS-3UTR CCA 90 bp TTGTGTTTTTGTGGTGCCAATGCAGAAGGGAGCCAGAAACCTTGCTCCTGGGGAAGCACAGAGACAAGTTaGAGGAGCGCACAGAGTCCG +
Preference number: 4 (lower is better)
Translates to: LCFCGANAEGSQKPCSWGSTETS*RSAQSP
Trigger: CGGACTCTGTGCGCTCCTCCAACTTGTCTCTGTGCT...TCCCCAGGAGCAAGGTTTCTGGCTCCCTTCTGCATTGGCACCACAAAAACACAA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000105307.8
CDS-3UTR CCA 90 bp ACCAGGAACAATTTTTGTGTTTTTGTGGTGCCAATGCAGAAGGGAGCCAGAAACAGCAGCCGGGCGGCTTaGCGGACATCGTCGCTATCC +
Preference number: 4 (lower is better)
Translates to: TRNNFCVFVVPMQKGARNSSRAA*RTSSLS
Trigger: GGATAGCGACGATGTCCGCCAAGCCGCCCGGCTGCT...GTTTCTGGCTCCCTTCTGCATTGGCACCACAAAAACACAAAAATTGTTCCTGGT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000105306.3
ENSMUST00000105307.8
CDS-3UTR CCA 90 bp TTTGTGGTGCCAATGCAGAAGGGAGCCAGAAACCTTGCTCCTGGGGACCATTGCTCCTTGAGCAAACACTaGATGAGAGGTCTGCGGTGT +
Preference number: 4 (lower is better)
Translates to: FVVPMQKGARNLAPGDHCSLSKH*MRGLRC
Trigger: ACACCGCAGACCTCTCATCCAGTGTTTGCTCAAGGA...GCAATGGTCCCCAGGAGCAAGGTTTCTGGCTCCCTTCTGCATTGGCACCACAAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000105306.3
ENSMUST00000105307.8
3UTR CAA 72 bp GGAGTTGATGCTGCAGATAGACTCAGACTGGGTACCTaGCACACCACACCCATGAAACGAGACTTGACGTGG +
Preference number: 4 (lower is better)
Translates to: GVDAADRLRLGT*HTTPMKRDLTW
Trigger: CCACGTCAAGTCTCGTTTCATGGGTGTGGTGTGCAAGGTACCCAGTCTGAGTCTATCTGCAGCATCAACTCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000105306.3
ENSMUST00000105307.8
CDS-3UTR TCA 90 bp GTGTGTCACTCTTGTGTCTGTGACTTGGTTGTCACCTCAAGCAGTTGCTCCCATTCTGCGGGCAGTGCATaGAGTAGCAGAGCGTGTACA +
Preference number: 4 (lower is better)
Translates to: VCHSCVCDLVVTSSSCSHSAGSA*SSRACT
Trigger: TGTACACGCTCTGCTACTTCATGCACTGCCCGCAGA...ATGGGAGCAACTGCTTGAGGTGACAACCAAGTCACAGACACAAGAGTGACACAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000105307.8
CDS-3UTR TCA 90 bp TTTGTGGTGCCAATGCAGAAGGGAGCCAGAAACCTTGCTCCTGGGGACCATTGCGTGTACTCCTCCTCTTaGATGGTCTTGAACTCCTTG +
Preference number: 4 (lower is better)
Translates to: FVVPMQKGARNLAPGDHCVYSSS*MVLNSL
Trigger: CAAGGAGTTCAAGACCATTCAAGAGGAGGAGTACAC...GCAATGGTCCCCAGGAGCAAGGTTTCTGGCTCCCTTCTGCATTGGCACCACAAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000105306.3
ENSMUST00000105307.8
CDS-3UTR TCA 90 bp TTTGTGTTTTTGTGGTGCCAATGCAGAAGGGAGCCAGAAACCTTGCTCCTGGGGACCTGGGAGAGGCTGTaGACAAGAGCACTTTGTGAG +
Preference number: 4 (lower is better)
Translates to: FVFLWCQCRREPETLLLGTWERL*TRALCE
Trigger: CTCACAAAGTGCTCTTGTTCACAGCCTCTCCCAGGT...CCCCAGGAGCAAGGTTTCTGGCTCCCTTCTGCATTGGCACCACAAAAACACAAA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000105306.3
ENSMUST00000105307.8
CDS-3UTR GCA 90 bp AAAACAAAGCACAAACATGATGTTGTACAGGTTTGGTCCATGCAAATGCATGTTTGCCCCCGCTGGCGCTaGTGGCTGCGCTGCAAGGGC +
Preference number: 4 (lower is better)
Translates to: KTKHKHDVVQVWSMQMHVCPRWR*WLRCKG
Trigger: GCCCTTGCAGCGCAGCCAGCAGCGCCAGCGGGGGCA...AACATGCATTTGCATGGACCAAACCTGTACAACATCATGTTTGTGCTTTGTTTT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000105307.8
CDS-3UTR GCA 90 bp GCTCTGAGATTAATAGTAGATTCTCTGACGTGCTCCCCCACCCCCACTCAGTTAAGCAAAGACACTGCCTaGTTCACCAGGTCGGTCCGT +
Preference number: 4 (lower is better)
Translates to: ALRLIVDSLTCSPTPTQLSKDTA*FTRSVR
Trigger: ACGGACCGACCTGGTGAAGCAGGCAGTGTCTTTGCT...TAACTGAGTGGGGGTGGGGGAGCACGTCAGAGAATCTACTATTAATCTCAGAGC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000105306.3
ENSMUST00000105307.8
CDS-3UTR CCA 90 bp TTGTGTTTTTGTGGTGCCAATGCAGAAGGGAGCCAGAAACCTTGCTCCTGGGGACCATGGGCTGCGGCCTaGCTGAAAGAGTTCATATCA +
Preference number: 4 (lower is better)
Translates to: LCFCGANAEGSQKPCSWGPWAAA*LKEFIS
Trigger: TGATATGAACTCTTTCAGCCAGGCCGCAGCCCATGG...TCCCCAGGAGCAAGGTTTCTGGCTCCCTTCTGCATTGGCACCACAAAAACACAA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000105306.3
ENSMUST00000105307.8
CDS-3UTR CCA 90 bp GTGTGTCACTCTTGTGTCTGTGACTTGGTTGTCACCTCAAGCAGTTGCTCCCATGCTCTTCTCCTTCTCTaGCTGAGCGAGCAGTTTGCG +
Preference number: 4 (lower is better)
Translates to: VCHSCVCDLVVTSSSCSHALLLL*LSEQFA
Trigger: CGCAAACTGCTCGCTCAGCCAGAGAAGGAGAAGAGC...ATGGGAGCAACTGCTTGAGGTGACAACCAAGTCACAGACACAAGAGTGACACAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000105306.3
ENSMUST00000105307.8
CDS-3UTR TCA 90 bp ACCAGGAACAATTTTTGTGTTTTTGTGGTGCCAATGCAGAAGGGAGCCAGAAACTCAGCTCTGACTGGCTaGACATGGGGAGCTCTCCCG +
Preference number: 4 (lower is better)
Translates to: TRNNFCVFVVPMQKGARNSALTG*TWGALP
Trigger: CGGGAGAGCTCCCCATGTTCAGCCAGTCAGAGCTGA...GTTTCTGGCTCCCTTCTGCATTGGCACCACAAAAACACAAAAATTGTTCCTGGT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000105307.8
CDS-3UTR TCA 90 bp GTGTGTCACTCTTGTGTCTGTGACTTGGTTGTCACCTCAAGCAGTTGCTCCCATCTGGAGGGGAGTTTCTaGATAGTTCTCCTCGCCATG +
Preference number: 4 (lower is better)
Translates to: VCHSCVCDLVVTSSSCSHLEGSF*IVLLAM
Trigger: CATGGCGAGGAGAACTATTCAGAAACTCCCCTCCAG...ATGGGAGCAACTGCTTGAGGTGACAACCAAGTCACAGACACAAGAGTGACACAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000105306.3
ENSMUST00000105307.8
CDS-3UTR TCA 90 bp GTCCAGAGAGTGTTCGACATCCACAGAGAACCAGCTGGGTTAGAGAGCAGCATCAGTAGAGATACTGCATaGCGAGCTGGAAGATGGGAT +
Preference number: 4 (lower is better)
Translates to: VQRVFDIHREPAGLESSISRDTA*RAGRWD
Trigger: ATCCCATCTTCCAGCTCGTCATGCAGTATCTCTACT...GATGCTGCTCTCTAACCCAGCTGGTTCTCTGTGGATGTCGAACACTCTCTGGAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000105306.3
ENSMUST00000105307.8
CDS-3UTR GCA 90 bp GCTCTGAGATTAATAGTAGATTCTCTGACGTGCTCCCCCACCCCCACTCAGTTACGGAAGCCCAAGTCCTaGTTGAACTTGGCTTCGATG +
Preference number: 4 (lower is better)
Translates to: ALRLIVDSLTCSPTPTQLRKPKS*LNLASM
Trigger: CATCGAAGCCAAGTTCAAGCAGGACTTGGGCTTCCG...TAACTGAGTGGGGGTGGGGGAGCACGTCAGAGAATCTACTATTAATCTCAGAGC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000105306.3
ENSMUST00000105307.8
CDS-3UTR CCA 90 bp GCTCTGAGATTAATAGTAGATTCTCTGACGTGCTCCCCCACCCCCACTCAGTTATCTGGATCTCGTACTTaGTGCACTTGGCGAAGCGCA +
Preference number: 4 (lower is better)
Translates to: ALRLIVDSLTCSPTPTQLSGSRT*CTWRSA
Trigger: TGCGCTTCGCCAAGTGCACCAAGTACGAGATCCAGA...TAACTGAGTGGGGGTGGGGGAGCACGTCAGAGAATCTACTATTAATCTCAGAGC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000105307.8
CDS-3UTR CCA 90 bp CAAAGCACAAACATGATGTTGTACAGGTTTGGTCCATGCAAATGCATGTTTTGTATGGCGGCATGCTCGTaGATGCGCAGCGCCACGCGG +
Preference number: 4 (lower is better)
Translates to: QSTNMMLYRFGPCKCMFCMAACS*MRSATR
Trigger: CCGCGTGGCGCTGCGCATCCACGAGCATGCCGCCAT...ACAAAACATGCATTTGCATGGACCAAACCTGTACAACATCATGTTTGTGCTTTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000105307.8
CDS-3UTR CCA 90 bp GCGAGAAGCGAGAGAACATATCTCACTTTGGCAAAAGAAAACAAAGCACAAACATCGTCCGCCTTGAGCTaGCGCGGCTCGCAGTCCACT +
Preference number: 4 (lower is better)
Translates to: ARSERTYLTLAKENKAQTSSALS*RGSQST
Trigger: AGTGGACTGCGAGCCGCGCCAGCTCAAGGCGGACGA...TGTTTGTGCTTTGTTTTCTTTTGCCAAAGTGAGATATGTTCTCTCGCTTCTCGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000105306.3
ENSMUST00000105307.8
CDS-3UTR CCA 90 bp GTCCAGAGAGTGTTCGACATCCACAGAGAACCAGCTGGGTTAGAGAGCAGCATCATGACGCACAGCTGCTaGCTGATCACTTCATTCTTG +
Preference number: 4 (lower is better)
Translates to: VQRVFDIHREPAGLESSIMTHSC*LITSFL
Trigger: CAAGAATGAAGTGATCAGCCAGCAGCTGTGCGTCAT...GATGCTGCTCTCTAACCCAGCTGGTTCTCTGTGGATGTCGAACACTCTCTGGAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000105306.3
ENSMUST00000105307.8
CDS-3UTR CCA 90 bp TGTGAGTTGGCCTGCAGGTTCTGGCCTCTGCTACAATCTAACCTGCAGACGCGTGAGTTCATATCACCCTaGGGGGTTGTAGAAATTCCA +
Preference number: 4 (lower is better)
Translates to: CELACRFWPLLQSNLQTREFISP*GVVEIP
Trigger: TGGAATTTCTACAACCCCCCAGGGTGATATGAACTC...ACGCGTCTGCAGGTTAGATTGTAGCAGAGGCCAGAACCTGCAGGCCAACTCACA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000105306.3
ENSMUST00000105307.8
CDS-3UTR CCA 90 bp TTTGTGGTGCCAATGCAGAAGGGAGCCAGAAACCTTGCTCCTGGGGACCATTGCGAGTTCATATCACCCTaGGGGGTTGTAGAAATTCCA +
Preference number: 4 (lower is better)
Translates to: FVVPMQKGARNLAPGDHCEFISP*GVVEIP
Trigger: TGGAATTTCTACAACCCCCCAGGGTGATATGAACTC...GCAATGGTCCCCAGGAGCAAGGTTTCTGGCTCCCTTCTGCATTGGCACCACAAA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000105306.3
ENSMUST00000105307.8
CDS-3UTR TCA 90 bp ACCAGGAACAATTTTTGTGTTTTTGTGGTGCCAATGCAGAAGGGAGCCAGAAACGTTCGCTCATGGTGTTaGTTCCATCCGGCCCCAGCA +
Preference number: 4 (lower is better)
Translates to: TRNNFCVFVVPMQKGARNVRSWC*FHPAPA
Trigger: TGCTGGGGCCGGATGGAATCAACACCATGAGCGAAC...GTTTCTGGCTCCCTTCTGCATTGGCACCACAAAAACACAAAAATTGTTCCTGGT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000105306.3
ENSMUST00000105307.8
CDS-3UTR TCA 90 bp TTTGTGGTGCCAATGCAGAAGGGAGCCAGAAACCTTGCTCCTGGGGACCATTGCATTTATGAGGAGTACTaGCAACCTCCACATTCAGGT +
Preference number: 4 (lower is better)
Translates to: FVVPMQKGARNLAPGDHCIYEEY*QPPHSG
Trigger: ACCTGAATGTGGAGGTTGTCAGTACTCCTCATAAAT...GCAATGGTCCCCAGGAGCAAGGTTTCTGGCTCCCTTCTGCATTGGCACCACAAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000105306.3
ENSMUST00000105307.8
CDS-3UTR TCA 90 bp GTCCAGAGAGTGTTCGACATCCACAGAGAACCAGCTGGGTTAGAGAGCAGCATCACGGATGGATATTTATaGGGAGTACTGACAACCTCC +
Preference number: 4 (lower is better)
Translates to: VQRVFDIHREPAGLESSITDGYL*GVLTTS
Trigger: GGAGGTTGTCAGTACTCCTCATAAATATCCATCCGT...GATGCTGCTCTCTAACCCAGCTGGTTCTCTGTGGATGTCGAACACTCTCTGGAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000105306.3
ENSMUST00000105307.8
CDS-3UTR TCA 90 bp GTGTGTCACTCTTGTGTCTGTGACTTGGTTGTCACCTCAAGCAGTTGCTCCCATGACAGGTGGATAGACTaGATCCTAATGGCCAACGTC +
Preference number: 4 (lower is better)
Translates to: VCHSCVCDLVVTSSSCSHDRWID*ILMANV
Trigger: GACGTTGGCCATTAGGATTCAGTCTATCCACCTGTC...ATGGGAGCAACTGCTTGAGGTGACAACCAAGTCACAGACACAAGAGTGACACAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000105306.3
ENSMUST00000105307.8
CDS-3UTR CCA 90 bp CAAAGCACAAACATGATGTTGTACAGGTTTGGTCCATGCAAATGCATGTTTTGTTGCTGCCCACCCGTGTaGCCAGCAGGGACTGCTCGA +
Preference number: 4 (lower is better)
Translates to: QSTNMMLYRFGPCKCMFCCCPPV*PAGTAR
Trigger: TCGAGCAGTCCCTGCTGGCCACACGGGTGGGCAGCA...ACAAAACATGCATTTGCATGGACCAAACCTGTACAACATCATGTTTGTGCTTTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000105307.8
CDS-3UTR CCA 90 bp TTTGTGTTTTTGTGGTGCCAATGCAGAAGGGAGCCAGAAACCTTGCTCCTGGGGCTCGGGGTGGACGGATaGATATTTATGAGGAGTACT +
Preference number: 4 (lower is better)
Translates to: FVFLWCQCRREPETLLLGLGVDG*IFMRST
Trigger: AGTACTCCTCATAAATATCCATCCGTCCACCCCGAG...CCCCAGGAGCAAGGTTTCTGGCTCCCTTCTGCATTGGCACCACAAAAACACAAA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000105306.3
ENSMUST00000105307.8
CDS-3UTR CCA 90 bp CAAAGCACAAACATGATGTTGTACAGGTTTGGTCCATGCAAATGCATGTTTTGTGTCAGAGCCGTCCAATaGCGGGTCTCGGGGTGGACG +
Preference number: 4 (lower is better)
Translates to: QSTNMMLYRFGPCKCMFCVRAVQ*RVSGWT
Trigger: CGTCCACCCCGAGACCCGCCATTGGACGGCTCTGAC...ACAAAACATGCATTTGCATGGACCAAACCTGTACAACATCATGTTTGTGCTTTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000105306.3
ENSMUST00000105307.8
CDS-3UTR CCA 90 bp TTGTGTTTTTGTGGTGCCAATGCAGAAGGGAGCCAGAAACCTTGCTCCTGGGGATGCAGAGCCTCCAGCTaGAAAAATTTAGCAGCAGAC +
Preference number: 4 (lower is better)
Translates to: LCFCGANAEGSQKPCSWGCRASS*KNLAAD
Trigger: GTCTGCTGCTAAATTTTTCCAGCTGGAGGCTCTGCA...TCCCCAGGAGCAAGGTTTCTGGCTCCCTTCTGCATTGGCACCACAAAAACACAA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000105306.3
ENSMUST00000105307.8
CDS-3UTR GCA 90 bp GCTCTGAGATTAATAGTAGATTCTCTGACGTGCTCCCCCACCCCCACTCAGTTAAAGATGACGCACAGCTaGTGGCTGATCACTTCATTC +
Preference number: 4 (lower is better)
Translates to: ALRLIVDSLTCSPTPTQLKMTHS*WLITSF
Trigger: GAATGAAGTGATCAGCCAGCAGCTGTGCGTCATCTT...TAACTGAGTGGGGGTGGGGGAGCACGTCAGAGAATCTACTATTAATCTCAGAGC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000105306.3
ENSMUST00000105307.8
CDS-3UTR CCA 90 bp ACCAGGAACAATTTTTGTGTTTTTGTGGTGCCAATGCAGAAGGGAGCCAGAAACGTCCTCAGCTCTGACTaGCTGAACATGGGGAGCTCT +
Preference number: 4 (lower is better)
Translates to: TRNNFCVFVVPMQKGARNVLSSD*LNMGSS
Trigger: AGAGCTCCCCATGTTCAGCCAGTCAGAGCTGAGGAC...GTTTCTGGCTCCCTTCTGCATTGGCACCACAAAAACACAAAAATTGTTCCTGGT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000105307.8
CDS-3UTR CCA 90 bp ACCAGGAACAATTTTTGTGTTTTTGTGGTGCCAATGCAGAAGGGAGCCAGAAACACATTCCTGTGTCCATaGGCTGCGGCCTGGCTGAAA +
Preference number: 4 (lower is better)
Translates to: TRNNFCVFVVPMQKGARNTFLCP*AAAWLK
Trigger: TTTCAGCCAGGCCGCAGCCCATGGACACAGGAATGT...GTTTCTGGCTCCCTTCTGCATTGGCACCACAAAAACACAAAAATTGTTCCTGGT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000105306.3
ENSMUST00000105307.8
CDS-3UTR CCA 90 bp GCTCTGAGATTAATAGTAGATTCTCTGACGTGCTCCCCCACCCCCACTCAGTTATGCAGAGCCTCCAGCTaGAAAAATTTAGCAGCAGAC +
Preference number: 4 (lower is better)
Translates to: ALRLIVDSLTCSPTPTQLCRASS*KNLAAD
Trigger: GTCTGCTGCTAAATTTTTCCAGCTGGAGGCTCTGCA...TAACTGAGTGGGGGTGGGGGAGCACGTCAGAGAATCTACTATTAATCTCAGAGC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 15 nt.
Matches the following 2 transcripts:
ENSMUST00000105306.3
ENSMUST00000105307.8
3UTR CAA 72 bp GATGTTGTACAGGTTTGGTCCATGCAAATGCATGTTTaGTTATGTGGGGGTGCCCTAGTCTCACCCCCAAAC +
Preference number: 4 (lower is better)
Translates to: DVVQVWSMQMHV*LCGGALVSPPN
Trigger: GTTTGGGGGTGAGACTAGGGCACCCCCACATAACAAAACATGCATTTGCATGGACCAAACCTGTACAACATC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000105306.3
ENSMUST00000105307.8
3UTR CAA 72 bp AGGCAAGCGACAGTGTGTCACTCTTGTGTCTGTGACTaGGTTGTCACCTCAAGCAGTTGCTCCCATAATCAT +
Preference number: 4 (lower is better)
Translates to: RQATVCHSCVCD*VVTSSSCSHNH
Trigger: ATGATTATGGGAGCAACTGCTTGAGGTGACAACCAAGTCACAGACACAAGAGTGACACACTGTCGCTTGCCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000105306.3
ENSMUST00000105307.8
CDS-3UTR TCA 90 bp GCTCTGAGATTAATAGTAGATTCTCTGACGTGCTCCCCCACCCCCACTCAGTTAACGGATGGATATTTATaGGGAGTACTGACAACCTCC +
Preference number: 4 (lower is better)
Translates to: ALRLIVDSLTCSPTPTQLTDGYL*GVLTTS
Trigger: GGAGGTTGTCAGTACTCCTCATAAATATCCATCCGT...TAACTGAGTGGGGGTGGGGGAGCACGTCAGAGAATCTACTATTAATCTCAGAGC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000105306.3
ENSMUST00000105307.8
CDS-3UTR TCA 90 bp GTGTGTCACTCTTGTGTCTGTGACTTGGTTGTCACCTCAAGCAGTTGCTCCCATGTTTTTAATGAGAAGTaGCTCTGGGCCACCGTAGTA +
Preference number: 4 (lower is better)
Translates to: VCHSCVCDLVVTSSSCSHVFNEK*LWATVV
Trigger: TACTACGGTGGCCCAGAGTCACTTCTCATTAAAAAC...ATGGGAGCAACTGCTTGAGGTGACAACCAAGTCACAGACACAAGAGTGACACAC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000105306.3
ENSMUST00000105307.8
CDS-3UTR GCA 90 bp CAAAGCACAAACATGATGTTGTACAGGTTTGGTCCATGCAAATGCATGTTTTGTGTTTGGCCTTGCTGTTaGGGCTGGCACACAAGGGGG +
Preference number: 4 (lower is better)
Translates to: QSTNMMLYRFGPCKCMFCVWPCC*GWHTRG
Trigger: CCCCCTTGTGTGCCAGCCGCAACAGCAAGGCCAAAC...ACAAAACATGCATTTGCATGGACCAAACCTGTACAACATCATGTTTGTGCTTTG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000105306.3
ENSMUST00000105307.8
CDS-3UTR CCA 90 bp CAAAGCACAAACATGATGTTGTACAGGTTTGGTCCATGCAAATGCATGTTTTGTCGTACTTGGTGCACTTaGCGAAGCGCAGGCTCAGGC +
Preference number: 4 (lower is better)
Translates to: QSTNMMLYRFGPCKCMFCRTWCT*RSAGSG
Trigger: GCCTGAGCCTGCGCTTCGCCAAGTGCACCAAGTACG...ACAAAACATGCATTTGCATGGACCAAACCTGTACAACATCATGTTTGTGCTTTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000105307.8
CDS-3UTR TCA 90 bp TCAACTATTAGATTCGAGATAATTAGAGATAATTGGCAGTGCACCTCTTTTGTGCTCGGATCCACTCCATaGGAGGGGGCAGCACGAGGA +
Preference number: 4 (lower is better)
Translates to: STIRFEIIRDNWQCTSFVLGSTP*EGAARG
Trigger: TCCTCGTGCTGCCCCCTCTCATGGAGTGGATCCGAG...CACAAAAGAGGTGCACTGCCAATTATCTCTAATTATCTCGAATCTAATAGTTGA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000105306.3
ENSMUST00000105307.8
CDS-3UTR TCA 90 bp CAAAGCACAAACATGATGTTGTACAGGTTTGGTCCATGCAAATGCATGTTTTGTGGGCTGCGGCCTGGCTaGAAGAGTTCATATCACCCT +
Preference number: 4 (lower is better)
Translates to: QSTNMMLYRFGPCKCMFCGLRPG*KSSYHP
Trigger: AGGGTGATATGAACTCTTTCAGCCAGGCCGCAGCCC...ACAAAACATGCATTTGCATGGACCAAACCTGTACAACATCATGTTTGTGCTTTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000105306.3
ENSMUST00000105307.8
CDS-3UTR GCA 90 bp CAAAGCACAAACATGATGTTGTACAGGTTTGGTCCATGCAAATGCATGTTTTGTTGTGGTGCATGGGCGTaGCATTACCGTGGTGCTTCG +
Preference number: 4 (lower is better)
Translates to: QSTNMMLYRFGPCKCMFCCGAWA*HYRGAS
Trigger: CGAAGCACCACGGTAATGGCACGCCCATGCACCACA...ACAAAACATGCATTTGCATGGACCAAACCTGTACAACATCATGTTTGTGCTTTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000105307.8
CDS-3UTR GCA 90 bp TCAACTATTAGATTCGAGATAATTAGAGATAATTGGCAGTGCACCTCTTTTGTGGCCCCCTGCTTGTGGTaGATGGGCGTGCCATTACCG +
Preference number: 4 (lower is better)
Translates to: STIRFEIIRDNWQCTSFVAPCLW*MGVPLP
Trigger: CGGTAATGGCACGCCCATGCACCACAAGCAGGGGGC...CACAAAAGAGGTGCACTGCCAATTATCTCTAATTATCTCGAATCTAATAGTTGA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000105307.8
CDS-3UTR GCA 90 bp CAAAGCACAAACATGATGTTGTACAGGTTTGGTCCATGCAAATGCATGTTTTGTCCCTCAGTTTGGCCTTaGTGTTGCGGCTGGCACACA +
Preference number: 4 (lower is better)
Translates to: QSTNMMLYRFGPCKCMFCPSVWP*CCGWHT
Trigger: TGTGTGCCAGCCGCAACAGCAAGGCCAAACTGAGGG...ACAAAACATGCATTTGCATGGACCAAACCTGTACAACATCATGTTTGTGCTTTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000105306.3
ENSMUST00000105307.8
CDS-3UTR GCA 90 bp TGTGAGTTGGCCTGCAGGTTCTGGCCTCTGCTACAATCTAACCTGCAGACGCGTAGTATTGATGCTTTTTaGACAGATAATCTCACAGTG +
Preference number: 4 (lower is better)
Translates to: CELACRFWPLLQSNLQTRSIDAF*TDNLTV
Trigger: CACTGTGAGATTATCTGTGCAAAAAGCATCAATACT...ACGCGTCTGCAGGTTAGATTGTAGCAGAGGCCAGAACCTGCAGGCCAACTCACA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000105306.3
ENSMUST00000105307.8
CDS-3UTR CCA 90 bp AAAACAAAGCACAAACATGATGTTGTACAGGTTTGGTCCATGCAAATGCATGTTGCAGGGACTGCTCGATaGTCCTCAGCTCTGACTGGC +
Preference number: 4 (lower is better)
Translates to: KTKHKHDVVQVWSMQMHVAGTAR*SSALTG
Trigger: GCCAGTCAGAGCTGAGGACCATCGAGCAGTCCCTGC...AACATGCATTTGCATGGACCAAACCTGTACAACATCATGTTTGTGCTTTGTTTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000105307.8
CDS-3UTR CCA 90 bp CAAAGCACAAACATGATGTTGTACAGGTTTGGTCCATGCAAATGCATGTTTTGTCCTGCTTGTGGTGCATaGGCGTGCCATTACCGTGGT +
Preference number: 4 (lower is better)
Translates to: QSTNMMLYRFGPCKCMFCPACGA*ACHYRG
Trigger: ACCACGGTAATGGCACGCCCATGCACCACAAGCAGG...ACAAAACATGCATTTGCATGGACCAAACCTGTACAACATCATGTTTGTGCTTTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000105307.8
CDS-3UTR CCA 90 bp GCGAGAAGCGAGAGAACATATCTCACTTTGGCAAAAGAAAACAAAGCACAAACAACATTCCTGTGTCCATaGGCTGCGGCCTGGCTGAAA +
Preference number: 4 (lower is better)
Translates to: ARSERTYLTLAKENKAQTTFLCP*AAAWLK
Trigger: TTTCAGCCAGGCCGCAGCCCATGGACACAGGAATGT...TGTTTGTGCTTTGTTTTCTTTTGCCAAAGTGAGATATGTTCTCTCGCTTCTCGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000105306.3
ENSMUST00000105307.8
CDS-3UTR TCA 90 bp ACCAGGAACAATTTTTGTGTTTTTGTGGTGCCAATGCAGAAGGGAGCCAGAAACGTGTACTCCTCCTCTTaGATGGTCTTGAACTCCTTG +
Preference number: 4 (lower is better)
Translates to: TRNNFCVFVVPMQKGARNVYSSS*MVLNSL
Trigger: CAAGGAGTTCAAGACCATTCAAGAGGAGGAGTACAC...GTTTCTGGCTCCCTTCTGCATTGGCACCACAAAAACACAAAAATTGTTCCTGGT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000105306.3
ENSMUST00000105307.8
CDS-3UTR GCA 90 bp AAAACAAAGCACAAACATGATGTTGTACAGGTTTGGTCCATGCAAATGCATGTTGCATCCAGCAGCATCTaGACCATTGCCTCGTCCCCA +
Preference number: 4 (lower is better)
Translates to: KTKHKHDVVQVWSMQMHVASSSI*TIASSP
Trigger: TGGGGACGAGGCAATGGTGCAGATGCTGCTGGATGC...AACATGCATTTGCATGGACCAAACCTGTACAACATCATGTTTGTGCTTTGTTTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000105306.3
ENSMUST00000105307.8
CDS-3UTR GCA 90 bp GTGTGTCACTCTTGTGTCTGTGACTTGGTTGTCACCTCAAGCAGTTGCTCCCATACAGGAATATGTCCATaGAACACAGCAAAAGTCAGA +
Preference number: 4 (lower is better)
Translates to: VCHSCVCDLVVTSSSCSHTGICP*NTAKVR
Trigger: TCTGACTTTTGCTGTGTTGCATGGACATATTCCTGT...ATGGGAGCAACTGCTTGAGGTGACAACCAAGTCACAGACACAAGAGTGACACAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000105306.3
ENSMUST00000105307.8
CDS-3UTR GCA 90 bp ACCAGGAACAATTTTTGTGTTTTTGTGGTGCCAATGCAGAAGGGAGCCAGAAACAAGATGACGCACAGCTaGTGGCTGATCACTTCATTC +
Preference number: 4 (lower is better)
Translates to: TRNNFCVFVVPMQKGARNKMTHS*WLITSF
Trigger: GAATGAAGTGATCAGCCAGCAGCTGTGCGTCATCTT...GTTTCTGGCTCCCTTCTGCATTGGCACCACAAAAACACAAAAATTGTTCCTGGT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000105306.3
ENSMUST00000105307.8
CDS-3UTR GCA 90 bp AAAACAAAGCACAAACATGATGTTGTACAGGTTTGGTCCATGCAAATGCATGTTCCTGTGTCCATGGGCTaGGGCCTGGCTGAAAGAGTT +
Preference number: 4 (lower is better)
Translates to: KTKHKHDVVQVWSMQMHVPVSMG*GLAERV
Trigger: AACTCTTTCAGCCAGGCCGCAGCCCATGGACACAGG...AACATGCATTTGCATGGACCAAACCTGTACAACATCATGTTTGTGCTTTGTTTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000105306.3
ENSMUST00000105307.8
CDS-3UTR CCA 90 bp TCAACTATTAGATTCGAGATAATTAGAGATAATTGGCAGTGCACCTCTTTTGTGTCAGGGCCCTCAGTTTaGCCTTGCTGTTGCGGCTGG +
Preference number: 4 (lower is better)
Translates to: STIRFEIIRDNWQCTSFVSGPSV*PCCCGW
Trigger: CCAGCCGCAACAGCAAGGCCAAACTGAGGGCCCTGA...CACAAAAGAGGTGCACTGCCAATTATCTCTAATTATCTCGAATCTAATAGTTGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000105306.3
ENSMUST00000105307.8
3UTR CAA 72 bp ACAGACAGACAGACACCAGGAACAATTTTTGTGTTTTaGTGGTGCCAATGCAGAAGGGAGCCAGAAACCTTG +
Preference number: 4 (lower is better)
Translates to: TDRQTPGTIFVF*WCQCRREPETL
Trigger: CAAGGTTTCTGGCTCCCTTCTGCATTGGCACCACAAAAACACAAAAATTGTTCCTGGTGTCTGTCTGTCTGT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000105306.3
ENSMUST00000105307.8
CDS-3UTR TCA 90 bp GCGAGAAGCGAGAGAACATATCTCACTTTGGCAAAAGAAAACAAAGCACAAACAGACAGGTGGATAGACTaGATCCTAATGGCCAACGTC +
Preference number: 4 (lower is better)
Translates to: ARSERTYLTLAKENKAQTDRWID*ILMANV
Trigger: GACGTTGGCCATTAGGATTCAGTCTATCCACCTGTC...TGTTTGTGCTTTGTTTTCTTTTGCCAAAGTGAGATATGTTCTCTCGCTTCTCGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000105306.3
ENSMUST00000105307.8
CDS-3UTR GCA 90 bp AAAACAAAGCACAAACATGATGTTGTACAGGTTTGGTCCATGCAAATGCATGTTCTGTTGTGCCGGCTGTaGATGGAGTCAGCTAAAGGC +
Preference number: 4 (lower is better)
Translates to: KTKHKHDVVQVWSMQMHVLLCRL*MESAKG
Trigger: GCCTTTAGCTGACTCCATGCACAGCCGGCACAACAG...AACATGCATTTGCATGGACCAAACCTGTACAACATCATGTTTGTGCTTTGTTTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000105307.8
CDS-3UTR GCA 90 bp CAAAGCACAAACATGATGTTGTACAGGTTTGGTCCATGCAAATGCATGTTTTGTGTGTCAAAGCTGTTGTaGCGGCTGTGCATGGAGTCA +
Preference number: 4 (lower is better)
Translates to: QSTNMMLYRFGPCKCMFCVSKLL*RLCMES
Trigger: TGACTCCATGCACAGCCGGCACAACAGCTTTGACAC...ACAAAACATGCATTTGCATGGACCAAACCTGTACAACATCATGTTTGTGCTTTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000105307.8
CDS-3UTR GCA 90 bp TTTGTGTTTTTGTGGTGCCAATGCAGAAGGGAGCCAGAAACCTTGCTCCTGGGGAGTATTGATGCTTTTTaGACAGATAATCTCACAGTG +
Preference number: 4 (lower is better)
Translates to: FVFLWCQCRREPETLLLGSIDAF*TDNLTV
Trigger: CACTGTGAGATTATCTGTGCAAAAAGCATCAATACT...CCCCAGGAGCAAGGTTTCTGGCTCCCTTCTGCATTGGCACCACAAAAACACAAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000105306.3
ENSMUST00000105307.8
CDS-3UTR TCA 90 bp TCAACTATTAGATTCGAGATAATTAGAGATAATTGGCAGTGCACCTCTTTTGTGAGCCCAAGTCCTGCTTaGACTTGGCTTCGATGGCCA +
Preference number: 4 (lower is better)
Translates to: STIRFEIIRDNWQCTSFVSPSPA*TWLRWP
Trigger: TGGCCATCGAAGCCAAGTTCAAGCAGGACTTGGGCT...CACAAAAGAGGTGCACTGCCAATTATCTCTAATTATCTCGAATCTAATAGTTGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000105306.3
ENSMUST00000105307.8
CDS-3UTR TCA 90 bp TCAACTATTAGATTCGAGATAATTAGAGATAATTGGCAGTGCACCTCTTTTGTGTTCTCCTTCTCTGGCTaGGCGAGCAGTTTGCGGAAC +
Preference number: 4 (lower is better)
Translates to: STIRFEIIRDNWQCTSFVFSFSG*ASSLRN
Trigger: GTTCCGCAAACTGCTCGCTCAGCCAGAGAAGGAGAA...CACAAAAGAGGTGCACTGCCAATTATCTCTAATTATCTCGAATCTAATAGTTGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000105306.3
ENSMUST00000105307.8
CDS-3UTR TCA 90 bp TCAACTATTAGATTCGAGATAATTAGAGATAATTGGCAGTGCACCTCTTTTGTGTTTCCACCTGGAGGTTaGCCTTGGAAGGTTCCACGT +
Preference number: 4 (lower is better)
Translates to: STIRFEIIRDNWQCTSFVFPPGG*PWKVPR
Trigger: ACGTGGAACCTTCCAAGGTCAACCTCCAGGTGGAAA...CACAAAAGAGGTGCACTGCCAATTATCTCTAATTATCTCGAATCTAATAGTTGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000105307.8
CDS-3UTR TCA 90 bp CAAAGCACAAACATGATGTTGTACAGGTTTGGTCCATGCAAATGCATGTTTTGTAGTAGAGATACTGCATaGCGAGCTGGAAGATGGGAT +
Preference number: 4 (lower is better)
Translates to: QSTNMMLYRFGPCKCMFCSRDTA*RAGRWD
Trigger: ATCCCATCTTCCAGCTCGTCATGCAGTATCTCTACT...ACAAAACATGCATTTGCATGGACCAAACCTGTACAACATCATGTTTGTGCTTTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000105306.3
ENSMUST00000105307.8
CDS-3UTR GCA 90 bp TCAACTATTAGATTCGAGATAATTAGAGATAATTGGCAGTGCACCTCTTTTGTGCGGAAGCCCAAGTCCTaGTTGAACTTGGCTTCGATG +
Preference number: 4 (lower is better)
Translates to: STIRFEIIRDNWQCTSFVRKPKS*LNLASM
Trigger: CATCGAAGCCAAGTTCAAGCAGGACTTGGGCTTCCG...CACAAAAGAGGTGCACTGCCAATTATCTCTAATTATCTCGAATCTAATAGTTGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000105306.3
ENSMUST00000105307.8
CDS-3UTR GCA 90 bp TCAACTATTAGATTCGAGATAATTAGAGATAATTGGCAGTGCACCTCTTTTGTGGCTGAGCGAGCAGTTTaGGGAACACATTCCTGTGTC +
Preference number: 4 (lower is better)
Translates to: STIRFEIIRDNWQCTSFVAERAV*GTHSCV
Trigger: GACACAGGAATGTGTTCCGCAAACTGCTCGCTCAGC...CACAAAAGAGGTGCACTGCCAATTATCTCTAATTATCTCGAATCTAATAGTTGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000105306.3
ENSMUST00000105307.8
CDS-3UTR CCA 90 bp CAAAGCACAAACATGATGTTGTACAGGTTTGGTCCATGCAAATGCATGTTTTGTATGACGCACAGCTGCTaGCTGATCACTTCATTCTTG +
Preference number: 4 (lower is better)
Translates to: QSTNMMLYRFGPCKCMFCMTHSC*LITSFL
Trigger: CAAGAATGAAGTGATCAGCCAGCAGCTGTGCGTCAT...ACAAAACATGCATTTGCATGGACCAAACCTGTACAACATCATGTTTGTGCTTTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000105306.3
ENSMUST00000105307.8
CDS-3UTR TCA 90 bp AAAACAAAGCACAAACATGATGTTGTACAGGTTTGGTCCATGCAAATGCATGTTGTTTTTAATGAGAAGTaGCTCTGGGCCACCGTAGTA +
Preference number: 4 (lower is better)
Translates to: KTKHKHDVVQVWSMQMHVVFNEK*LWATVV
Trigger: TACTACGGTGGCCCAGAGTCACTTCTCATTAAAAAC...AACATGCATTTGCATGGACCAAACCTGTACAACATCATGTTTGTGCTTTGTTTT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000105306.3
ENSMUST00000105307.8
CDS-3UTR GCA 90 bp AAAACAAAGCACAAACATGATGTTGTACAGGTTTGGTCCATGCAAATGCATGTTTTGTCGTACAGGAGCTaGTTGAACGCTTCGTTTTCA +
Preference number: 4 (lower is better)
Translates to: KTKHKHDVVQVWSMQMHVLSYRS*LNASFS
Trigger: TGAAAACGAAGCGTTCAAGCAGCTCCTGTACGACAA...AACATGCATTTGCATGGACCAAACCTGTACAACATCATGTTTGTGCTTTGTTTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000105306.3
ENSMUST00000105307.8
CDS-3UTR CCA 90 bp TCAACTATTAGATTCGAGATAATTAGAGATAATTGGCAGTGCACCTCTTTTGTGACAGTACGATCTCCATaGCACTCTGGATCTCGTACT +
Preference number: 4 (lower is better)
Translates to: STIRFEIIRDNWQCTSFVTVRSP*HSGSRT
Trigger: AGTACGAGATCCAGAGTGCCATGGAGATCGTACTGT...CACAAAAGAGGTGCACTGCCAATTATCTCTAATTATCTCGAATCTAATAGTTGA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000105307.8
CDS-3UTR CCA 90 bp TCAACTATTAGATTCGAGATAATTAGAGATAATTGGCAGTGCACCTCTTTTGTGCTCGGGGTGGACGGATaGATATTTATGAGGAGTACT +
Preference number: 4 (lower is better)
Translates to: STIRFEIIRDNWQCTSFVLGVDG*IFMRST
Trigger: AGTACTCCTCATAAATATCCATCCGTCCACCCCGAG...CACAAAAGAGGTGCACTGCCAATTATCTCTAATTATCTCGAATCTAATAGTTGA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000105306.3
ENSMUST00000105307.8
3UTR CAA 72 bp ACCATGATCGAATCACTAAGGCAGGAATATGTGACCTaGTATAGTATCAGCAGGAATTTGTCAGATGCAAGT +
Preference number: 4 (lower is better)
Translates to: TMIESLRQEYVT*YSISRNLSDAS
Trigger: ACTTGCATCTGACAAATTCCTGCTGATACTATACAAGGTCACATATTCCTGCCTTAGTGATTCGATCATGGT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000105306.3
ENSMUST00000105307.8
CDS-3UTR TCA 90 bp TCAACTATTAGATTCGAGATAATTAGAGATAATTGGCAGTGCACCTCTTTTGTGATTTATGAGGAGTACTaGCAACCTCCACATTCAGGT +
Preference number: 4 (lower is better)
Translates to: STIRFEIIRDNWQCTSFVIYEEY*QPPHSG
Trigger: ACCTGAATGTGGAGGTTGTCAGTACTCCTCATAAAT...CACAAAAGAGGTGCACTGCCAATTATCTCTAATTATCTCGAATCTAATAGTTGA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000105306.3
ENSMUST00000105307.8
3UTR CAA 72 bp AGTCTCACCCCCAAACCACAATCAGCATGCAGGTTATaGTCAACTATTAGATTCGAGATAATTAGAGATAAT +
Preference number: 4 (lower is better)
Translates to: SLTPKPQSACRL*STIRFEIIRDN
Trigger: ATTATCTCTAATTATCTCGAATCTAATAGTTGACAATAACCTGCATGCTGATTGTGGTTTGGGGGTGAGACT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000105306.3
ENSMUST00000105307.8
CDS-3UTR GCA 90 bp TCAACTATTAGATTCGAGATAATTAGAGATAATTGGCAGTGCACCTCTTTTGTGACAGGAATATGTCCATaGAACACAGCAAAAGTCAGA +
Preference number: 4 (lower is better)
Translates to: STIRFEIIRDNWQCTSFVTGICP*NTAKVR
Trigger: TCTGACTTTTGCTGTGTTGCATGGACATATTCCTGT...CACAAAAGAGGTGCACTGCCAATTATCTCTAATTATCTCGAATCTAATAGTTGA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000105306.3
ENSMUST00000105307.8
CDS GCA 90 bp GCGGGACTGCGGTCGCCGCCGTGGCTGGCGGGGCGCAACAACTACTaGCCCCGCTGGCGCTGCTGGCTGCGCTGCAAGGGCCACCGCTCG +
Preference number: 5 (lower is better)
Translates to: AGLRSPPWLAGRNNY*PRWRCWLRCKGHRS
Trigger: CGAGCGGTGGCCCTTGCAGCGCAGCCAGCAGCGCCAGCGGGGGCAGTAGTTGTTGCGCCCCGCCAGCCACGGCGGCGACCGCAGTCCCGC
77% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000020231.10
ENSMUST00000105307.8
CDS CCA 90 bp GGCGGCGGTGGCTGTGGTTGGCGGGACTGCGGTCGCCGCCGTGGCTaGCGGGGCGCAACAACTACTGCCCCCGCTGGCGCTGCTGGCTGC +
Preference number: 5 (lower is better)
Translates to: GGGGCGWRDCGRRRG*RGATTTAPAGAAGC
Trigger: GCAGCCAGCAGCGCCAGCGGGGGCAGTAGTTGTTGCGCCCCGCCAGCCACGGCGGCGACCGCAGTCCCGCCAACCACAGCCACCGCCGCC
77% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000020231.10
ENSMUST00000105307.8
CDS CCA 90 bp GTGGTGGTGATGATGGTTGGCGGCGACGGCGGCGGTGGCTGTGGTTaGCGGGACTGCGGTCGCCGCCGTGGCTGGCGGGGCGCAACAACT +
Preference number: 5 (lower is better)
Translates to: VVVMMVGGDGGGGCG*RDCGRRRGWRGATT
Trigger: AGTTGTTGCGCCCCGCCAGCCACGGCGGCGACCGCAGTCCCGCCAACCACAGCCACCGCCGCCGTCGCCGCCAACCATCATCACCACCAC
72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020231.10
ENSMUST00000105307.8
CDS CCA 90 bp CCTGCCCGGGGATCCCGCGAGCGCAGCAGCAGCAACTCCAGTTCCTaGAGGGTCCAGGGGACCTCGTCGAGGTCCGGCAGCAACCGCGAG +
Preference number: 5 (lower is better)
Translates to: PARGSRERSSSNSSS*RVQGTSSRSGSNRE
Trigger: CTCGCGGTTGCTGCCGGACCTCGACGAGGTCCCCTGGACCCTCCAGGAACTGGAGTTGCTGCTGCTGCGCTCGCGGGATCCCCGGGCAGG
71% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000020231.10
ENSMUST00000105307.8
CDS TCA 90 bp GTCCAGGGGACCTCGTCGAGGTCCGGCAGCAACCGCGAGCAGTGCTaGCCGGCGCAGTCCAGCCCCTCGGAGTCTTCCACCAGGGCAGTG +
Preference number: 5 (lower is better)
Translates to: VQGTSSRSGSNREQC*PAQSSPSESSTRAV
Trigger: CACTGCCCTGGTGGAAGACTCCGAGGGGCTGGACTGCGCCGGTCAGCACTGCTCGCGGTTGCTGCCGGACCTCGACGAGGTCCCCTGGAC
70% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000020231.10
ENSMUST00000105307.8
CDS CCA 90 bp ACCCGTGTGGCCAGCAGGGACTGCTCGATGGTCCTCAGCTCTGACTaGCTGAACATGGGGAGCTCTCCCGGCTTGCTGGGCCGCTGTGGG +
Preference number: 5 (lower is better)
Translates to: TRVASRDCSMVLSSD*LNMGSSPGLLGRCG
Trigger: CCCACAGCGGCCCAGCAAGCCGGGAGAGCTCCCCATGTTCAGCCAGTCAGAGCTGAGGACCATCGAGCAGTCCCTGCTGGCCACACGGGT
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020231.10
ENSMUST00000105307.8
CDS TCA 90 bp GTGTGGCCAGCAGGGACTGCTCGATGGTCCTCAGCTCTGACTGGCTaGACATGGGGAGCTCTCCCGGCTTGCTGGGCCGCTGTGGGTCTC +
Preference number: 5 (lower is better)
Translates to: VWPAGTARWSSALTG*TWGALPACWAAVGL
Trigger: GAGACCCACAGCGGCCCAGCAAGCCGGGAGAGCTCCCCATGTTCAGCCAGTCAGAGCTGAGGACCATCGAGCAGTCCCTGCTGGCCACAC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020231.10
ENSMUST00000105307.8
CDS CCA 90 bp CATCTGCGGGCAGTGCATGAAGTAGCAGAGCGTGTACAGGGCCTCTaGCTCCCAGTAGAGCGCCCCCTGCTTGTGGTGCATGGGCGTGCC +
Preference number: 5 (lower is better)
Translates to: HLRAVHEVAERVQGL*LPVERPLLVVHGRA
Trigger: GGCACGCCCATGCACCACAAGCAGGGGGCGCTCTACTGGGAGCCAGAGGCCCTGTACACGCTCTGCTACTTCATGCACTGCCCGCAGATG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000020231.10
ENSMUST00000105307.8
CDS-3UTR CAA 90 bp CTAGATCATGGTCCTTGGCAGCAGGTGCCCATGGCTCCGGGGCACTGGAGGGGGCCGTGGTGCTTCGCATaGAGGGGCTGTAGATGGTGC +
Preference number: 5 (lower is better)
Translates to: LDHGPWQQVPMAPGHWRGPWCFA*RGCRWC
Trigger: GCACCATCTACAGCCCCTCAATGCGAAGCACCACGG...CCCCCTCCAGTGCCCCGGAGCCATGGGCACCTGCTGCCAAGGACCATGATCTAG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000105307.8
CDS GCA 90 bp GGCGTGCCATTACCGTGGTGCTTCGCATTGAGGGGCTGTAGATGGTaGATCGCCCGGGACACAAGGTCACTGAGCTCGGCGATGCTGCCC +
Preference number: 5 (lower is better)
Translates to: GVPLPWCFALRGCRW*IARDTRSLSSAMLP
Trigger: GGGCAGCATCGCCGAGCTCAGTGACCTTGTGTCCCGGGCGATGCACCATCTACAGCCCCTCAATGCGAAGCACCACGGTAATGGCACGCC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020231.10
ENSMUST00000105307.8
CDS CCA 90 bp CAGCGGTGCAGTGAGCCGCCAGGCCCCAGGACAGTACGATCTCCATaGCACTCTGGATCTCGTACTTGGTGCACTTGGCGAAGCGCAGGC +
Preference number: 5 (lower is better)
Translates to: QRCSEPPGPRTVRSP*HSGSRTWCTWRSAG
Trigger: GCCTGCGCTTCGCCAAGTGCACCAAGTACGAGATCCAGAGTGCCATGGAGATCGTACTGTCCTGGGGCCTGGCGGCTCACTGCACCGCTG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020231.10
ENSMUST00000105307.8
CDS-3UTR CAA 90 bp CTAGATCATGGTCCTTGGCAGCAGGTGCCCATGGCTCCGGGGCACTGGAGGGGGTGTTCGCTCATGGTGTaGATTCCATCCGGCCCCAGC +
Preference number: 5 (lower is better)
Translates to: LDHGPWQQVPMAPGHWRGCSLMV*IPSGPS
Trigger: GCTGGGGCCGGATGGAATCAACACCATGAGCGAACA...CCCCCTCCAGTGCCCCGGAGCCATGGGCACCTGCTGCCAAGGACCATGATCTAG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000105306.3
ENSMUST00000105307.8
CDS TCA 90 bp TCAGCTAAAGGCGGCCAGCAGCTCCCGCCATACGGGGACGCCGGGTaGGAGTCAGAACAGCACAGAGACAAGTTGGAGGAGCGCACAGAG +
Preference number: 5 (lower is better)
Translates to: SAKGGQQLPPYGDAG*ESEQHRDKLEERTE
Trigger: CTCTGTGCGCTCCTCCAACTTGTCTCTGTGCTGTTCTGACTCTCACCCGGCGTCCCCGTATGGCGGGAGCTGCTGGCCGCCTTTAGCTGA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020231.10
ENSMUST00000105307.8
CDS TCA 90 bp GACCGGCGCAGTCCAGCCCCTCGGAGTCTTCCACCAGGGCAGTGTTaGCGGTGTCAAAGCTGTTGTGCCGGCTGTGCATGGAGTCAGCTA +
Preference number: 5 (lower is better)
Translates to: DRRSPAPRSLPPGQC*RCQSCCAGCAWSQL
Trigger: TAGCTGACTCCATGCACAGCCGGCACAACAGCTTTGACACCGTCAACACTGCCCTGGTGGAAGACTCCGAGGGGCTGGACTGCGCCGGTC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020231.10
ENSMUST00000105307.8
CDS GCA 90 bp TCCACCAGGGCAGTGTTGACGGTGTCAAAGCTGTTGTGCCGGCTGTaGATGGAGTCAGCTAAAGGCGGCCAGCAGCTCCCGCCATACGGG +
Preference number: 5 (lower is better)
Translates to: STRAVLTVSKLLCRL*MESAKGGQQLPPYG
Trigger: CCCGTATGGCGGGAGCTGCTGGCCGCCTTTAGCTGACTCCATGCACAGCCGGCACAACAGCTTTGACACCGTCAACACTGCCCTGGTGGA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020231.10
ENSMUST00000105307.8
CDS CCA 90 bp CATACGGGGACGCCGGGTGAGAGTCAGAACAGCACAGAGACAAGTTaGAGGAGCGCACAGAGTCCGCCGCGCCACCATAACCCGAGTCCA +
Preference number: 5 (lower is better)
Translates to: HTGTPGESQNSTETS*RSAQSPPRHHNPSP
Trigger: TGGACTCGGGTTATGGTGGCGCGGCGGACTCTGTGCGCTCCTCCAACTTGTCTCTGTGCTGTTCTGACTCTCACCCGGCGTCCCCGTATG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020231.10
ENSMUST00000105307.8
CDS CCA 90 bp GGCAGCACGAGGAAGGGCCTGGAAACTCCTGAGTGCGAGAGCCTTTaGAGACATCCTGACCCCACTGGTGACCCCGGGTCAGGCTCTCTA +
Preference number: 5 (lower is better)
Translates to: GSTRKGLETPECESL*RHPDPTGDPGSGSL
Trigger: TAGAGAGCCTGACCCGGGGTCACCAGTGGGGTCAGGATGTCTCCAAAGGCTCTCGCACTCAGGAGTTTCCAGGCCCTTCCTCGTGCTGCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000105306.3
CDS GCA 90 bp TCGGAGTCTTCCACCAGGGCAGTGTTGACGGTGTCAAAGCTGTTGTaGCGGCTGTGCATGGAGTCAGCTAAAGGCGGCCAGCAGCTCCCG +
Preference number: 5 (lower is better)
Translates to: SESSTRAVLTVSKLL*RLCMESAKGGQQLP
Trigger: CGGGAGCTGCTGGCCGCCTTTAGCTGACTCCATGCACAGCCGGCACAACAGCTTTGACACCGTCAACACTGCCCTGGTGGAAGACTCCGA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020231.10
ENSMUST00000105307.8
CDS CCA 90 bp ATGGGCGTGCCATTACCGTGGTGCTTCGCATTGAGGGGCTGTAGATaGTGCATCGCCCGGGACACAAGGTCACTGAGCTCGGCGATGCTG +
Preference number: 5 (lower is better)
Translates to: MGVPLPWCFALRGCR*CIARDTRSLSSAML
Trigger: CAGCATCGCCGAGCTCAGTGACCTTGTGTCCCGGGCGATGCACCATCTACAGCCCCTCAATGCGAAGCACCACGGTAATGGCACGCCCAT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020231.10
ENSMUST00000105307.8
CDS-3UTR CAA 90 bp TGTGAGTTGGCCTGCAGGTTCTGGCCTCTGCTACAATCTAACCTGCAGACGCGTCAGCAGCCGGGCGGCTaGGCGGACATCGTCGCTATC +
Preference number: 5 (lower is better)
Translates to: CELACRFWPLLQSNLQTRQQPGG*ADIVAI
Trigger: GATAGCGACGATGTCCGCCAAGCCGCCCGGCTGCTG...ACGCGTCTGCAGGTTAGATTGTAGCAGAGGCCAGAACCTGCAGGCCAACTCACA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000105306.3
ENSMUST00000105307.8
CDS TCA 90 bp GGTCGGTCCGTCCACAATTCAGCATCCGGAAGCCCAAGTCCTGCTTaGACTTGGCTTCGATGGCCACGGCGTCCAGCTTCCGAGAAGCAC +
Preference number: 5 (lower is better)
Translates to: GRSVHNSASGSPSPA*TWLRWPRRPASEKH
Trigger: GTGCTTCTCGGAAGCTGGACGCCGTGGCCATCGAAGCCAAGTTCAAGCAGGACTTGGGCTTCCGGATGCTGAATTGTGGACGGACCGACC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020231.10
ENSMUST00000105306.3
ENSMUST00000105307.8
CDS-3UTR CAA 90 bp GTCCAGAGAGTGTTCGACATCCACAGAGAACCAGCTGGGTTAGAGAGCAGCATCAAGCAGTCGTCCGCCTaGAGCTGGCGCGGCTCGCAG +
Preference number: 5 (lower is better)
Translates to: VQRVFDIHREPAGLESSIKQSSA*SWRGSQ
Trigger: CTGCGAGCCGCGCCAGCTCAAGGCGGACGACTGCTT...GATGCTGCTCTCTAACCCAGCTGGTTCTCTGTGGATGTCGAACACTCTCTGGAC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000105306.3
ENSMUST00000105307.8
CDS TCA 90 bp AAGGTTCCACGTTGGGATTCTCCCACTCCATCTGCGGGCAGTGCATaGAGTAGCAGAGCGTGTACAGGGCCTCTGGCTCCCAGTAGAGCG +
Preference number: 5 (lower is better)
Translates to: KVPRWDSPTPSAGSA*SSRACTGPLAPSRA
Trigger: CGCTCTACTGGGAGCCAGAGGCCCTGTACACGCTCTGCTACTTCATGCACTGCCCGCAGATGGAGTGGGAGAATCCCAACGTGGAACCTT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020231.10
ENSMUST00000105307.8
CDS GCA 90 bp ACCAGGTCGGTCCGTCCACAATTCAGCATCCGGAAGCCCAAGTCCTaGTTGAACTTGGCTTCGATGGCCACGGCGTCCAGCTTCCGAGAA +
Preference number: 5 (lower is better)
Translates to: TRSVRPQFSIRKPKS*LNLASMATASSFRE
Trigger: TTCTCGGAAGCTGGACGCCGTGGCCATCGAAGCCAAGTTCAAGCAGGACTTGGGCTTCCGGATGCTGAATTGTGGACGGACCGACCTGGT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020231.10
ENSMUST00000105306.3
ENSMUST00000105307.8
CDS GCA 90 bp TCGCTCATGGTGTTGATTCCATCCGGCCCCAGCAAAGACACTGCCTaGTTCACCAGGTCGGTCCGTCCACAATTCAGCATCCGGAAGCCC +
Preference number: 5 (lower is better)
Translates to: SLMVLIPSGPSKDTA*FTRSVRPQFSIRKP
Trigger: GGGCTTCCGGATGCTGAATTGTGGACGGACCGACCTGGTGAAGCAGGCAGTGTCTTTGCTGGGGCCGGATGGAATCAACACCATGAGCGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020231.10
ENSMUST00000105306.3
ENSMUST00000105307.8
CDS-3UTR CAA 90 bp TTTGTGTTTTTGTGGTGCCAATGCAGAAGGGAGCCAGAAACCTTGCTCCTGGGGCAGCAGCCGGGCGGCTaGGCGGACATCGTCGCTATC +
Preference number: 5 (lower is better)
Translates to: FVFLWCQCRREPETLLLGQQPGG*ADIVAI
Trigger: GATAGCGACGATGTCCGCCAAGCCGCCCGGCTGCTG...CCCCAGGAGCAAGGTTTCTGGCTCCCTTCTGCATTGGCACCACAAAAACACAAA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000105306.3
ENSMUST00000105307.8
CDS GCA 90 bp CTGTTCGCTCATGGTGTTGATTCCATCCGGCCCCAGCAAAGACACTaGCTGCTTCACCAGGTCGGTCCGTCCACAATTCAGCATCCGGAA +
Preference number: 5 (lower is better)
Translates to: LFAHGVDSIRPQQRH*LLHQVGPSTIQHPE
Trigger: TTCCGGATGCTGAATTGTGGACGGACCGACCTGGTGAAGCAGGCAGTGTCTTTGCTGGGGCCGGATGGAATCAACACCATGAGCGAACAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020231.10
ENSMUST00000105306.3
ENSMUST00000105307.8
CDS-3UTR CAA 90 bp TTTGTGGTGCCAATGCAGAAGGGAGCCAGAAACCTTGCTCCTGGGGACCATTGCAAGTCCTGCTTGAACTaGGCTTCGATGGCCACGGCG +
Preference number: 5 (lower is better)
Translates to: FVVPMQKGARNLAPGDHCKSCLN*ASMATA
Trigger: CGCCGTGGCCATCGAAGCCAAGTTCAAGCAGGACTT...GCAATGGTCCCCAGGAGCAAGGTTTCTGGCTCCCTTCTGCATTGGCACCACAAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000105306.3
ENSMUST00000105307.8
CDS-3UTR CAA 90 bp TTTGTGGTGCCAATGCAGAAGGGAGCCAGAAACCTTGCTCCTGGGGACCATTGCTGTTCGCTCATGGTGTaGATTCCATCCGGCCCCAGC +
Preference number: 5 (lower is better)
Translates to: FVVPMQKGARNLAPGDHCCSLMV*IPSGPS
Trigger: GCTGGGGCCGGATGGAATCAACACCATGAGCGAACA...GCAATGGTCCCCAGGAGCAAGGTTTCTGGCTCCCTTCTGCATTGGCACCACAAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000105306.3
ENSMUST00000105307.8
CDS-3UTR CAA 90 bp TTTGTGTTTTTGTGGTGCCAATGCAGAAGGGAGCCAGAAACCTTGCTCCTGGGGACAGAGCCTTCCACCTaGGCCCCAGCATCCAGGAGG +
Preference number: 5 (lower is better)
Translates to: FVFLWCQCRREPETLLLGTEPST*APASRR
Trigger: CCTCCTGGATGCTGGGGCCAAGGTGGAAGGCTCTGT...CCCCAGGAGCAAGGTTTCTGGCTCCCTTCTGCATTGGCACCACAAAAACACAAA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000105306.3
ENSMUST00000105307.8
CDS-3UTR CAA 90 bp TTGTGTTTTTGTGGTGCCAATGCAGAAGGGAGCCAGAAACCTTGCTCCTGGGGAGCCCTCAGTTTGGCCTaGCTGTTGCGGCTGGCACAC +
Preference number: 5 (lower is better)
Translates to: LCFCGANAEGSQKPCSWGALSLA*LLRLAH
Trigger: GTGTGCCAGCCGCAACAGCAAGGCCAAACTGAGGGC...TCCCCAGGAGCAAGGTTTCTGGCTCCCTTCTGCATTGGCACCACAAAAACACAA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000105306.3
ENSMUST00000105307.8
CDS-3UTR CAA 90 bp TTTGTGTTTTTGTGGTGCCAATGCAGAAGGGAGCCAGAAACCTTGCTCCTGGGGCTCAGGGCCCTCAGTTaGGCCTTGCTGTTGCGGCTG +
Preference number: 5 (lower is better)
Translates to: FVFLWCQCRREPETLLLGLRALS*ALLLRL
Trigger: CAGCCGCAACAGCAAGGCCAAACTGAGGGCCCTGAG...CCCCAGGAGCAAGGTTTCTGGCTCCCTTCTGCATTGGCACCACAAAAACACAAA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000105306.3
ENSMUST00000105307.8
CDS CCA 90 bp AGCCAGAATCTCCTCCAGGGACAGGATATCGCTCTTCTCCTTCTCTaGCTGAGCGAGCAGTTTGCGGAACACATTCCTGTGTCCATGGGC +
Preference number: 5 (lower is better)
Translates to: SQNLLQGQDIALLLL*LSEQFAEHIPVSMG
Trigger: GCCCATGGACACAGGAATGTGTTCCGCAAACTGCTCGCTCAGCCAGAGAAGGAGAAGAGCGATATCCTGTCCCTGGAGGAGATTCTGGCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000105306.3
ENSMUST00000105307.8
CDS-3UTR CAA 90 bp TGTGAGTTGGCCTGCAGGTTCTGGCCTCTGCTACAATCTAACCTGCAGACGCGTGCCCCTTCGCCATTTTaGTCGTACAGGAGCTGCTTG +
Preference number: 5 (lower is better)
Translates to: CELACRFWPLLQSNLQTRAPSPF*SYRSCL
Trigger: CAAGCAGCTCCTGTACGACAAAAATGGCGAAGGGGC...ACGCGTCTGCAGGTTAGATTGTAGCAGAGGCCAGAACCTGCAGGCCAACTCACA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000105306.3
ENSMUST00000105307.8
CDS-3UTR CAA 90 bp TTGTGTTTTTGTGGTGCCAATGCAGAAGGGAGCCAGAAACCTTGCTCCTGGGGAACGGTGTCAAAGCTGTaGTGCCGGCTGTGCATGGAG +
Preference number: 5 (lower is better)
Translates to: LCFCGANAEGSQKPCSWGTVSKL*CRLCME
Trigger: CTCCATGCACAGCCGGCACAACAGCTTTGACACCGT...TCCCCAGGAGCAAGGTTTCTGGCTCCCTTCTGCATTGGCACCACAAAAACACAA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000105307.8
CDS-3UTR CAA 90 bp ACCAGGAACAATTTTTGTGTTTTTGTGGTGCCAATGCAGAAGGGAGCCAGAAACAAGCAGTCGTCCGCCTaGAGCTGGCGCGGCTCGCAG +
Preference number: 5 (lower is better)
Translates to: TRNNFCVFVVPMQKGARNKQSSA*SWRGSQ
Trigger: CTGCGAGCCGCGCCAGCTCAAGGCGGACGACTGCTT...GTTTCTGGCTCCCTTCTGCATTGGCACCACAAAAACACAAAAATTGTTCCTGGT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000105306.3
ENSMUST00000105307.8
CDS-3UTR CAA 90 bp TTTGTGTTTTTGTGGTGCCAATGCAGAAGGGAGCCAGAAACCTTGCTCCTGGGGGAGAGGTCTGCGGTGTaGCTGGAAGGCAATCCGAAG +
Preference number: 5 (lower is better)
Translates to: FVFLWCQCRREPETLLLGERSAV*LEGNPK
Trigger: CTTCGGATTGCCTTCCAGCAACACCGCAGACCTCTC...CCCCAGGAGCAAGGTTTCTGGCTCCCTTCTGCATTGGCACCACAAAAACACAAA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000105306.3
ENSMUST00000105307.8
CDS-3UTR CAA 90 bp GCTCTGAGATTAATAGTAGATTCTCTGACGTGCTCCCCCACCCCCACTCAGTTAAGTTTGGCCTTGCTGTaGCGGCTGGCACACAAGGGG +
Preference number: 5 (lower is better)
Translates to: ALRLIVDSLTCSPTPTQLSLALL*RLAHKG
Trigger: CCCCTTGTGTGCCAGCCGCAACAGCAAGGCCAAACT...TAACTGAGTGGGGGTGGGGGAGCACGTCAGAGAATCTACTATTAATCTCAGAGC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000105306.3
ENSMUST00000105307.8
CDS-3UTR CAA 90 bp TTTGTGGTGCCAATGCAGAAGGGAGCCAGAAACCTTGCTCCTGGGGACCATTGCTTGTCATTTGTTGGCTaGCTGGAGAGGAGGGCCTTG +
Preference number: 5 (lower is better)
Translates to: FVVPMQKGARNLAPGDHCLSFVG*LERRAL
Trigger: CAAGGCCCTCCTCTCCAGCAAGCCAACAAATGACAA...GCAATGGTCCCCAGGAGCAAGGTTTCTGGCTCCCTTCTGCATTGGCACCACAAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000105306.3
ENSMUST00000105307.8
CDS CCA 90 bp AGCAAAAGTCAGAGCCGTCCAATGGCGGGTCTCGGGGTGGACGGATaGATATTTATGAGGAGTACTGACAACCTCCACATTCAGGTCAGC +
Preference number: 5 (lower is better)
Translates to: SKSQSRPMAGLGVDG*IFMRSTDNLHIQVS
Trigger: GCTGACCTGAATGTGGAGGTTGTCAGTACTCCTCATAAATATCCATCCGTCCACCCCGAGACCCGCCATTGGACGGCTCTGACTTTTGCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000020231.10
ENSMUST00000105306.3
ENSMUST00000105307.8
CDS-3UTR CAA 90 bp GCTCTGAGATTAATAGTAGATTCTCTGACGTGCTCCCCCACCCCCACTCAGTTACTCTGGATCTCGTACTaGGTGCACTTGGCGAAGCGC +
Preference number: 5 (lower is better)
Translates to: ALRLIVDSLTCSPTPTQLLWISY*VHLAKR
Trigger: GCGCTTCGCCAAGTGCACCAAGTACGAGATCCAGAG...TAACTGAGTGGGGGTGGGGGAGCACGTCAGAGAATCTACTATTAATCTCAGAGC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000105307.8
CDS-3UTR CAA 90 bp GTCCAGAGAGTGTTCGACATCCACAGAGAACCAGCTGGGTTAGAGAGCAGCATCCATACCACGGAACCCTaGGAAGACGACAGGTGGATA +
Preference number: 5 (lower is better)
Translates to: VQRVFDIHREPAGLESSIHTTEP*EDDRWI
Trigger: TATCCACCTGTCGTCTTCCAAGGGTTCCGTGGTATG...GATGCTGCTCTCTAACCCAGCTGGTTCTCTGTGGATGTCGAACACTCTCTGGAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000105306.3
ENSMUST00000105307.8
CDS GCA 90 bp GTCTTGAACTCCTTGAGCAAACACTGGATGAGAGGTCTGCGGTGTTaGTGGAAGGCAATCCGAAGTGACTCCAGCCATGTGTGTAGAGTC +
Preference number: 5 (lower is better)
Translates to: VLNSLSKHWMRGLRC*WKAIRSDSSHVCRV
Trigger: GACTCTACACACATGGCTGGAGTCACTTCGGATTGCCTTCCAGCAACACCGCAGACCTCTCATCCAGTGTTTGCTCAAGGAGTTCAAGAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020231.10
ENSMUST00000105306.3
ENSMUST00000105307.8
CDS CCA 90 bp TTTCTGAATAGTTCTCCTCGCCATGCTCCACAGAGCCTTCCACCTTaGCCCCAGCATCCAGGAGGAGCTGAACTACAGGAATATGTCCAT +
Preference number: 5 (lower is better)
Translates to: FLNSSPRHAPQSLPP*PQHPGGAELQEYVH
Trigger: ATGGACATATTCCTGTAGTTCAGCTCCTCCTGGATGCTGGGGCCAAGGTGGAAGGCTCTGTGGAGCATGGCGAGGAGAACTATTCAGAAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020231.10
ENSMUST00000105306.3
ENSMUST00000105307.8
CDS CCA 90 bp CTGTGTCCATGGGCTGCGGCCTGGCTGAAAGAGTTCATATCACCCTaGGGGGTTGTAGAAATTCCATTCCTGTACATGGTTCCTATCAGG +
Preference number: 5 (lower is better)
Translates to: LCPWAAAWLKEFISP*GVVEIPFLYMVPIR
Trigger: CCTGATAGGAACCATGTACAGGAATGGAATTTCTACAACCCCCCAGGGTGATATGAACTCTTTCAGCCAGGCCGCAGCCCATGGACACAG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000105306.3
ENSMUST00000105307.8
CDS-3UTR CAA 90 bp GCTCTGAGATTAATAGTAGATTCTCTGACGTGCTCCCCCACCCCCACTCAGTTAATTTCCGAGTCGTTGTaGACCGTGTGCTCCAGGGTC +
Preference number: 5 (lower is better)
Translates to: ALRLIVDSLTCSPTPTQLISESL*TVCSRV
Trigger: GACCCTGGAGCACACGGTCAACAACGACTCGGAAAT...TAACTGAGTGGGGGTGGGGGAGCACGTCAGAGAATCTACTATTAATCTCAGAGC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000105307.8
CDS-3UTR CAA 90 bp TTGTGTTTTTGTGGTGCCAATGCAGAAGGGAGCCAGAAACCTTGCTCCTGGGGATTGTCATTTGTTGGCTaGCTGGAGAGGAGGGCCTTG +
Preference number: 5 (lower is better)
Translates to: LCFCGANAEGSQKPCSWGLSFVG*LERRAL
Trigger: CAAGGCCCTCCTCTCCAGCAAGCCAACAAATGACAA...TCCCCAGGAGCAAGGTTTCTGGCTCCCTTCTGCATTGGCACCACAAAAACACAA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000105306.3
ENSMUST00000105307.8
CDS-3UTR CAA 90 bp GTGTGTCACTCTTGTGTCTGTGACTTGGTTGTCACCTCAAGCAGTTGCTCCCATGCCCCTTCGCCATTTTaGTCGTACAGGAGCTGCTTG +
Preference number: 5 (lower is better)
Translates to: VCHSCVCDLVVTSSSCSHAPSPF*SYRSCL
Trigger: CAAGCAGCTCCTGTACGACAAAAATGGCGAAGGGGC...ATGGGAGCAACTGCTTGAGGTGACAACCAAGTCACAGACACAAGAGTGACACAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000105306.3
ENSMUST00000105307.8
CDS CCA 90 bp TTGAACTCCTTGAGCAAACACTGGATGAGAGGTCTGCGGTGTTGCTaGAAGGCAATCCGAAGTGACTCCAGCCATGTGTGTAGAGTCCAT +
Preference number: 5 (lower is better)
Translates to: LNSLSKHWMRGLRCC*KAIRSDSSHVCRVH
Trigger: ATGGACTCTACACACATGGCTGGAGTCACTTCGGATTGCCTTCCAGCAACACCGCAGACCTCTCATCCAGTGTTTGCTCAAGGAGTTCAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020231.10
ENSMUST00000105306.3
ENSMUST00000105307.8
CDS-3UTR CAA 90 bp ACCAGGAACAATTTTTGTGTTTTTGTGGTGCCAATGCAGAAGGGAGCCAGAAACAGTTTGGCCTTGCTGTaGCGGCTGGCACACAAGGGG +
Preference number: 5 (lower is better)
Translates to: TRNNFCVFVVPMQKGARNSLALL*RLAHKG
Trigger: CCCCTTGTGTGCCAGCCGCAACAGCAAGGCCAAACT...GTTTCTGGCTCCCTTCTGCATTGGCACCACAAAAACACAAAAATTGTTCCTGGT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000105306.3
ENSMUST00000105307.8
CDS-3UTR CAA 90 bp GTCCAGAGAGTGTTCGACATCCACAGAGAACCAGCTGGGTTAGAGAGCAGCATCATCTCTATGCAGGTGTaGTCATTTGTTGGCTTGCTG +
Preference number: 5 (lower is better)
Translates to: VQRVFDIHREPAGLESSIISMQV*SFVGLL
Trigger: CAGCAAGCCAACAAATGACAACACCTGCATAGAGAT...GATGCTGCTCTCTAACCCAGCTGGTTCTCTGTGGATGTCGAACACTCTCTGGAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000105306.3
ENSMUST00000105307.8
CDS-3UTR CAA 90 bp AAAACAAAGCACAAACATGATGTTGTACAGGTTTGGTCCATGCAAATGCATGTTACCAGCATCGAGAGCTaGGCCAGCGCGTCCTTGGGC +
Preference number: 5 (lower is better)
Translates to: KTKHKHDVVQVWSMQMHVTSIES*ASASLG
Trigger: GCCCAAGGACGCGCTGGCCAAGCTCTCGATGCTGGT...AACATGCATTTGCATGGACCAAACCTGTACAACATCATGTTTGTGCTTTGTTTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000105307.8
CDS-3UTR CAA 90 bp CAAAGCACAAACATGATGTTGTACAGGTTTGGTCCATGCAAATGCATGTTTTGTACAGAGCCTTCCACCTaGGCCCCAGCATCCAGGAGG +
Preference number: 5 (lower is better)
Translates to: QSTNMMLYRFGPCKCMFCTEPST*APASRR
Trigger: CCTCCTGGATGCTGGGGCCAAGGTGGAAGGCTCTGT...ACAAAACATGCATTTGCATGGACCAAACCTGTACAACATCATGTTTGTGCTTTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000105306.3
ENSMUST00000105307.8
CDS-3UTR CAA 90 bp TTTGTGTTTTTGTGGTGCCAATGCAGAAGGGAGCCAGAAACCTTGCTCCTGGGGATGGTCTTGAACTCCTaGAGCAAACACTGGATGAGA +
Preference number: 5 (lower is better)
Translates to: FVFLWCQCRREPETLLLGMVLNS*SKHWMR
Trigger: TCTCATCCAGTGTTTGCTCAAGGAGTTCAAGACCAT...CCCCAGGAGCAAGGTTTCTGGCTCCCTTCTGCATTGGCACCACAAAAACACAAA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000105306.3
ENSMUST00000105307.8
CDS-3UTR CAA 90 bp GCGAGAAGCGAGAGAACATATCTCACTTTGGCAAAAGAAAACAAAGCACAAACAAAGTCCTGCTTGAACTaGGCTTCGATGGCCACGGCG +
Preference number: 5 (lower is better)
Translates to: ARSERTYLTLAKENKAQTKSCLN*ASMATA
Trigger: CGCCGTGGCCATCGAAGCCAAGTTCAAGCAGGACTT...TGTTTGTGCTTTGTTTTCTTTTGCCAAAGTGAGATATGTTCTCTCGCTTCTCGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000105306.3
ENSMUST00000105307.8
CDS-3UTR CAA 90 bp TCAACTATTAGATTCGAGATAATTAGAGATAATTGGCAGTGCACCTCTTTTGTGGCAGCATCTGCACCATaGCCTCGTCCCCACGGACGC +
Preference number: 5 (lower is better)
Translates to: STIRFEIIRDNWQCTSFVAASAP*PRPHGR
Trigger: GCGTCCGTGGGGACGAGGCAATGGTGCAGATGCTGC...CACAAAAGAGGTGCACTGCCAATTATCTCTAATTATCTCGAATCTAATAGTTGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000105306.3
ENSMUST00000105307.8
CDS-3UTR CAA 90 bp CAAAGCACAAACATGATGTTGTACAGGTTTGGTCCATGCAAATGCATGTTTTGTCAGCACAGAGACAAGTaGGAGGAGCGCACAGAGTCC +
Preference number: 5 (lower is better)
Translates to: QSTNMMLYRFGPCKCMFCQHRDK*EERTES
Trigger: GGACTCTGTGCGCTCCTCCAACTTGTCTCTGTGCTG...ACAAAACATGCATTTGCATGGACCAAACCTGTACAACATCATGTTTGTGCTTTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000105307.8
CDS-3UTR CAA 90 bp GCGAGAAGCGAGAGAACATATCTCACTTTGGCAAAAGAAAACAAAGCACAAACATCCACCAGGGCAGTGTaGACGGTGTCAAAGCTGTTG +
Preference number: 5 (lower is better)
Translates to: ARSERTYLTLAKENKAQTSTRAV*TVSKLL
Trigger: CAACAGCTTTGACACCGTCAACACTGCCCTGGTGGA...TGTTTGTGCTTTGTTTTCTTTTGCCAAAGTGAGATATGTTCTCTCGCTTCTCGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000105307.8
CDS-3UTR CAA 90 bp AAAACAAAGCACAAACATGATGTTGTACAGGTTTGGTCCATGCAAATGCATGTTTCGTACTTGGTGCACTaGGCGAAGCGCAGGCTCAGG +
Preference number: 5 (lower is better)
Translates to: KTKHKHDVVQVWSMQMHVSYLVH*AKRRLR
Trigger: CCTGAGCCTGCGCTTCGCCAAGTGCACCAAGTACGA...AACATGCATTTGCATGGACCAAACCTGTACAACATCATGTTTGTGCTTTGTTTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000105307.8
CDS-3UTR CAA 90 bp CAAAGCACAAACATGATGTTGTACAGGTTTGGTCCATGCAAATGCATGTTTTGTGAGAGGTCTGCGGTGTaGCTGGAAGGCAATCCGAAG +
Preference number: 5 (lower is better)
Translates to: QSTNMMLYRFGPCKCMFCERSAV*LEGNPK
Trigger: CTTCGGATTGCCTTCCAGCAACACCGCAGACCTCTC...ACAAAACATGCATTTGCATGGACCAAACCTGTACAACATCATGTTTGTGCTTTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000105306.3
ENSMUST00000105307.8
CDS-3UTR CAA 90 bp TCAACTATTAGATTCGAGATAATTAGAGATAATTGGCAGTGCACCTCTTTTGTGGCCCTCAGTTTGGCCTaGCTGTTGCGGCTGGCACAC +
Preference number: 5 (lower is better)
Translates to: STIRFEIIRDNWQCTSFVALSLA*LLRLAH
Trigger: GTGTGCCAGCCGCAACAGCAAGGCCAAACTGAGGGC...CACAAAAGAGGTGCACTGCCAATTATCTCTAATTATCTCGAATCTAATAGTTGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000105306.3
ENSMUST00000105307.8
CDS-3UTR CAA 90 bp TCAACTATTAGATTCGAGATAATTAGAGATAATTGGCAGTGCACCTCTTTTGTGCTCAGGGCCCTCAGTTaGGCCTTGCTGTTGCGGCTG +
Preference number: 5 (lower is better)
Translates to: STIRFEIIRDNWQCTSFVLRALS*ALLLRL
Trigger: CAGCCGCAACAGCAAGGCCAAACTGAGGGCCCTGAG...CACAAAAGAGGTGCACTGCCAATTATCTCTAATTATCTCGAATCTAATAGTTGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000105306.3
ENSMUST00000105307.8
CDS-3UTR CAA 90 bp GTCCAGAGAGTGTTCGACATCCACAGAGAACCAGCTGGGTTAGAGAGCAGCATCAGCTCCATGATCTCATaGTTTTTAATGAGAAGTGAC +
Preference number: 5 (lower is better)
Translates to: VQRVFDIHREPAGLESSISSMIS*FLMRSD
Trigger: GTCACTTCTCATTAAAAACAATGAGATCATGGAGCT...GATGCTGCTCTCTAACCCAGCTGGTTCTCTGTGGATGTCGAACACTCTCTGGAC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000105306.3
ENSMUST00000105307.8
CDS-3UTR CAA 90 bp AAAACAAAGCACAAACATGATGTTGTACAGGTTTGGTCCATGCAAATGCATGTTGAGGTCTGCTTCCTCTaGATCTCCGTGAGCTTGGGG +
Preference number: 5 (lower is better)
Translates to: KTKHKHDVVQVWSMQMHVEVCFL*ISVSLG
Trigger: CCCCAAGCTCACGGAGATCAAGAGGAAGCAGACCTC...AACATGCATTTGCATGGACCAAACCTGTACAACATCATGTTTGTGCTTTGTTTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000105306.3
ENSMUST00000105307.8
CDS-3UTR CAA 90 bp TTTGTGTTTTTGTGGTGCCAATGCAGAAGGGAGCCAGAAACCTTGCTCCTGGGGAGCTCCATGATCTCATaGTTTTTAATGAGAAGTGAC +
Preference number: 5 (lower is better)
Translates to: FVFLWCQCRREPETLLLGSSMIS*FLMRSD
Trigger: GTCACTTCTCATTAAAAACAATGAGATCATGGAGCT...CCCCAGGAGCAAGGTTTCTGGCTCCCTTCTGCATTGGCACCACAAAAACACAAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000105306.3
ENSMUST00000105307.8
CDS-3UTR CAA 90 bp TTGTGTTTTTGTGGTGCCAATGCAGAAGGGAGCCAGAAACCTTGCTCCTGGGGAACACAGTTGTCAGTATaGATGCTTTTTGCACAGATA +
Preference number: 5 (lower is better)
Translates to: LCFCGANAEGSQKPCSWGTQLSV*MLFAQI
Trigger: TATCTGTGCAAAAAGCATCAATACTGACAACTGTGT...TCCCCAGGAGCAAGGTTTCTGGCTCCCTTCTGCATTGGCACCACAAAAACACAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000105306.3
ENSMUST00000105307.8
CDS-3UTR CAA 90 bp GCGAGAAGCGAGAGAACATATCTCACTTTGGCAAAAGAAAACAAAGCACAAACACATACCACGGAACCCTaGGAAGACGACAGGTGGATA +
Preference number: 5 (lower is better)
Translates to: ARSERTYLTLAKENKAQTHTTEP*EDDRWI
Trigger: TATCCACCTGTCGTCTTCCAAGGGTTCCGTGGTATG...TGTTTGTGCTTTGTTTTCTTTTGCCAAAGTGAGATATGTTCTCTCGCTTCTCGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000105306.3
ENSMUST00000105307.8
CDS-3UTR CAA 90 bp AAAACAAAGCACAAACATGATGTTGTACAGGTTTGGTCCATGCAAATGCATGTTCTTTCCACCTGGAGGTaGACCTTGGAAGGTTCCACG +
Preference number: 5 (lower is better)
Translates to: KTKHKHDVVQVWSMQMHVLSTWR*TLEGST
Trigger: CGTGGAACCTTCCAAGGTCAACCTCCAGGTGGAAAG...AACATGCATTTGCATGGACCAAACCTGTACAACATCATGTTTGTGCTTTGTTTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000105307.8
CDS-3UTR CAA 90 bp AAAACAAAGCACAAACATGATGTTGTACAGGTTTGGTCCATGCAAATGCATGTTAAGCCCAAGTCCTGCTaGAACTTGGCTTCGATGGCC +
Preference number: 5 (lower is better)
Translates to: KTKHKHDVVQVWSMQMHVKPKSC*NLASMA
Trigger: GGCCATCGAAGCCAAGTTCAAGCAGGACTTGGGCTT...AACATGCATTTGCATGGACCAAACCTGTACAACATCATGTTTGTGCTTTGTTTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000105306.3
ENSMUST00000105307.8
CDS-3UTR CAA 90 bp GCTCTGAGATTAATAGTAGATTCTCTGACGTGCTCCCCCACCCCCACTCAGTTACTGATCACTTCATTCTaGCTTGCTTTTAAGATCTCA +
Preference number: 5 (lower is better)
Translates to: ALRLIVDSLTCSPTPTQLLITSF*LAFKIS
Trigger: TGAGATCTTAAAAGCAAGCAAGAATGAAGTGATCAG...TAACTGAGTGGGGGTGGGGGAGCACGTCAGAGAATCTACTATTAATCTCAGAGC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000105306.3
ENSMUST00000105307.8
CDS-3UTR CAA 90 bp TCAACTATTAGATTCGAGATAATTAGAGATAATTGGCAGTGCACCTCTTTTGTGGAGGTCTGCTTCCTCTaGATCTCCGTGAGCTTGGGG +
Preference number: 5 (lower is better)
Translates to: STIRFEIIRDNWQCTSFVEVCFL*ISVSLG
Trigger: CCCCAAGCTCACGGAGATCAAGAGGAAGCAGACCTC...CACAAAAGAGGTGCACTGCCAATTATCTCTAATTATCTCGAATCTAATAGTTGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000105306.3
ENSMUST00000105307.8
CDS-3UTR CAA 90 bp GCGAGAAGCGAGAGAACATATCTCACTTTGGCAAAAGAAAACAAAGCACAAACAATGGTCTTGAACTCCTaGAGCAAACACTGGATGAGA +
Preference number: 5 (lower is better)
Translates to: ARSERTYLTLAKENKAQTMVLNS*SKHWMR
Trigger: TCTCATCCAGTGTTTGCTCAAGGAGTTCAAGACCAT...TGTTTGTGCTTTGTTTTCTTTTGCCAAAGTGAGATATGTTCTCTCGCTTCTCGC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000105306.3
ENSMUST00000105307.8
CDS-3UTR CAA 90 bp TCAACTATTAGATTCGAGATAATTAGAGATAATTGGCAGTGCACCTCTTTTGTGTGCAGGTGTTGTCATTaGTTGGCTTGCTGGAGAGGA +
Preference number: 5 (lower is better)
Translates to: STIRFEIIRDNWQCTSFVCRCCH*LACWRG
Trigger: TCCTCTCCAGCAAGCCAACAAATGACAACACCTGCA...CACAAAAGAGGTGCACTGCCAATTATCTCTAATTATCTCGAATCTAATAGTTGA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000105306.3
ENSMUST00000105307.8
CDS-3UTR CAA 90 bp ACCAGGAACAATTTTTGTGTTTTTGTGGTGCCAATGCAGAAGGGAGCCAGAAACACACAGTTGTCAGTATaGATGCTTTTTGCACAGATA +
Preference number: 5 (lower is better)
Translates to: TRNNFCVFVVPMQKGARNTQLSV*MLFAQI
Trigger: TATCTGTGCAAAAAGCATCAATACTGACAACTGTGT...GTTTCTGGCTCCCTTCTGCATTGGCACCACAAAAACACAAAAATTGTTCCTGGT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 15 nt.
Matches the following 2 transcripts:
ENSMUST00000105306.3
ENSMUST00000105307.8
CDS-3UTR CAA 90 bp AAAACAAAGCACAAACATGATGTTGTACAGGTTTGGTCCATGCAAATGCATGTTATCTCTATGCAGGTGTaGTCATTTGTTGGCTTGCTG +
Preference number: 5 (lower is better)
Translates to: KTKHKHDVVQVWSMQMHVISMQV*SFVGLL
Trigger: CAGCAAGCCAACAAATGACAACACCTGCATAGAGAT...AACATGCATTTGCATGGACCAAACCTGTACAACATCATGTTTGTGCTTTGTTTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000105306.3
ENSMUST00000105307.8
CDS-3UTR CAA 90 bp AAAACAAAGCACAAACATGATGTTGTACAGGTTTGGTCCATGCAAATGCATGTTTCGTACAGGAGCTGCTaGAACGCTTCGTTTTCAATA +
Preference number: 5 (lower is better)
Translates to: KTKHKHDVVQVWSMQMHVSYRSC*NASFSI
Trigger: TATTGAAAACGAAGCGTTCAAGCAGCTCCTGTACGA...AACATGCATTTGCATGGACCAAACCTGTACAACATCATGTTTGTGCTTTGTTTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000105306.3
ENSMUST00000105307.8
CDS-3UTR CAA 90 bp GCGAGAAGCGAGAGAACATATCTCACTTTGGCAAAAGAAAACAAAGCACAAACACTGATCACTTCATTCTaGCTTGCTTTTAAGATCTCA +
Preference number: 5 (lower is better)
Translates to: ARSERTYLTLAKENKAQTLITSF*LAFKIS
Trigger: TGAGATCTTAAAAGCAAGCAAGAATGAAGTGATCAG...TGTTTGTGCTTTGTTTTCTTTTGCCAAAGTGAGATATGTTCTCTCGCTTCTCGC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000105306.3
ENSMUST00000105307.8
CDS-3UTR CAA 90 bp TCAACTATTAGATTCGAGATAATTAGAGATAATTGGCAGTGCACCTCTTTTGTGTCGTACAGGAGCTGCTaGAACGCTTCGTTTTCAATA +
Preference number: 5 (lower is better)
Translates to: STIRFEIIRDNWQCTSFVSYRSC*NASFSI
Trigger: TATTGAAAACGAAGCGTTCAAGCAGCTCCTGTACGA...CACAAAAGAGGTGCACTGCCAATTATCTCTAATTATCTCGAATCTAATAGTTGA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000105306.3
ENSMUST00000105307.8
CDS GCA 72 bp CGGTCGCCGCCGTGGCTGGCGGGGCGCAACAACTACTaGCCCCGCTGGCGCTGCTGGCTGCGCTGCAAGGGC +
Preference number: 6 (lower is better)
Translates to: RSPPWLAGRNNY*PRWRCWLRCKG
Trigger: GCCCTTGCAGCGCAGCCAGCAGCGCCAGCGGGGGCAGTAGTTGTTGCGCCCCGCCAGCCACGGCGGCGACCG
76% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000020231.10
ENSMUST00000105307.8
CDS GCA 72 bp GGCGCAACAACTACTGCCCCCGCTGGCGCTGCTGGCTaGGCTGCAAGGGCCACCGCTCGCCGCTCCCCCTCC +
Preference number: 6 (lower is better)
Translates to: GATTTAPAGAAG*AARATARRSPS
Trigger: GGAGGGGGAGCGGCGAGCGGTGGCCCTTGCAGCGCAGCCAGCAGCGCCAGCGGGGGCAGTAGTTGTTGCGCC
75% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000020231.10
ENSMUST00000105307.8
CDS GCA 72 bp CTGGCGGGGCGCAACAACTACTGCCCCCGCTGGCGCTaGTGGCTGCGCTGCAAGGGCCACCGCTCGCCGCTC +
Preference number: 6 (lower is better)
Translates to: LAGRNNYCPRWR*WLRCKGHRSPL
Trigger: GAGCGGCGAGCGGTGGCCCTTGCAGCGCAGCCAGCAGCGCCAGCGGGGGCAGTAGTTGTTGCGCCCCGCCAG
75% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000020231.10
ENSMUST00000105307.8
CDS CCA 72 bp GGTGGTGGTGATGATGGTTGGCGGCGACGGCGGCGGTaGCTGTGGTTGGCGGGACTGCGGTCGCCGCCGTGG +
Preference number: 6 (lower is better)
Translates to: GGGDDGWRRRRR*LWLAGLRSPPW
Trigger: CCACGGCGGCGACCGCAGTCCCGCCAACCACAGCCACCGCCGCCGTCGCCGCCAACCATCATCACCACCACC
74% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020231.10
ENSMUST00000105307.8
CDS TCA 72 bp ACCTCGTCGAGGTCCGGCAGCAACCGCGAGCAGTGCTaGCCGGCGCAGTCCAGCCCCTCGGAGTCTTCCACC +
Preference number: 6 (lower is better)
Translates to: TSSRSGSNREQC*PAQSSPSESST
Trigger: GGTGGAAGACTCCGAGGGGCTGGACTGCGCCGGTCAGCACTGCTCGCGGTTGCTGCCGGACCTCGACGAGGT
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020231.10
ENSMUST00000105307.8
CDS CCA 72 bp GGATCCCGCGAGCGCAGCAGCAGCAACTCCAGTTCCTaGAGGGTCCAGGGGACCTCGTCGAGGTCCGGCAGC +
Preference number: 6 (lower is better)
Translates to: GSRERSSSNSSS*RVQGTSSRSGS
Trigger: GCTGCCGGACCTCGACGAGGTCCCCTGGACCCTCCAGGAACTGGAGTTGCTGCTGCTGCGCTCGCGGGATCC
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020231.10
ENSMUST00000105307.8
CDS CCA 72 bp TGCGCACTAGAGCCCGGCTTACCAGCATCGAGAGCTTaGCCAGCGCGTCCTTGGGCAGGCTGCCGGGGACCG +
Preference number: 6 (lower is better)
Translates to: CALEPGLPASRA*PARPWAGCRGP
Trigger: CGGTCCCCGGCAGCCTGCCCAAGGACGCGCTGGCCAAGCTCTCGATGCTGGTAAGCCGGGCTCTAGTGCGCA
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020231.10
ENSMUST00000105307.8
CDS TCA 72 bp GGCGGCCAGCAGCTCCCGCCATACGGGGACGCCGGGTaGGAGTCAGAACAGCACAGAGACAAGTTGGAGGAG +
Preference number: 6 (lower is better)
Translates to: GGQQLPPYGDAG*ESEQHRDKLEE
Trigger: CTCCTCCAACTTGTCTCTGTGCTGTTCTGACTCTCACCCGGCGTCCCCGTATGGCGGGAGCTGCTGGCCGCC
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020231.10
ENSMUST00000105307.8
CDS TCA 72 bp GCTGTAGATGGTGCATCGCCCGGGACACAAGGTCACTaGGCTCGGCGATGCTGCCCACCCGTGTGGCCAGCA +
Preference number: 6 (lower is better)
Translates to: AVDGASPGTQGH*ARRCCPPVWPA
Trigger: TGCTGGCCACACGGGTGGGCAGCATCGCCGAGCTCAGTGACCTTGTGTCCCGGGCGATGCACCATCTACAGC
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020231.10
ENSMUST00000105307.8
CDS CCA 72 bp GGGCCGCTGTGGGTCTCGGTGCAGGTTCAGGCTCTCTaGCAGGCTCAGCACACCACTGGCGTTCTTCCCACA +
Preference number: 6 (lower is better)
Translates to: GPLWVSVQVQAL*QAQHTTGVLPT
Trigger: TGTGGGAAGAACGCCAGTGGTGTGCTGAGCCTGCCAGAGAGCCTGAACCTGCACCGAGACCCACAGCGGCCC
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020231.10
ENSMUST00000105307.8
CDS CCA 72 bp GCCAGCAGGGACTGCTCGATGGTCCTCAGCTCTGACTaGCTGAACATGGGGAGCTCTCCCGGCTTGCTGGGC +
Preference number: 6 (lower is better)
Translates to: ASRDCSMVLSSD*LNMGSSPGLLG
Trigger: GCCCAGCAAGCCGGGAGAGCTCCCCATGTTCAGCCAGTCAGAGCTGAGGACCATCGAGCAGTCCCTGCTGGC
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020231.10
ENSMUST00000105307.8
CDS CCA 72 bp CGGACATCGTCGCTATCCATAGAAAAGCTGCGGCGGTaGCCGGCATGCGCCACGGCCACTCGGATCCACTCC +
Preference number: 6 (lower is better)
Translates to: RTSSLSIEKLRR*PACATATRIHS
Trigger: GGAGTGGATCCGAGTGGCCGTGGCGCATGCCGGCCACCGCCGCAGCTTTTCTATGGATAGCGACGATGTCCG
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020231.10
ENSMUST00000105306.3
ENSMUST00000105307.8
CDS CAA 72 bp AGCTCTGACTGGCTGAACATGGGGAGCTCTCCCGGCTaGCTGGGCCGCTGTGGGTCTCGGTGCAGGTTCAGG +
Preference number: 6 (lower is better)
Translates to: SSDWLNMGSSPG*LGRCGSRCRFR
Trigger: CCTGAACCTGCACCGAGACCCACAGCGGCCCAGCAAGCCGGGAGAGCTCCCCATGTTCAGCCAGTCAGAGCT
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020231.10
ENSMUST00000105307.8
CDS CAA 90 bp ATGGTCCTCAGCTCTGACTGGCTGAACATGGGGAGCTCTCCCGGCTaGCTGGGCCGCTGTGGGTCTCGGTGCAGGTTCAGGCTCTCTGGC +
Preference number: 6 (lower is better)
Translates to: MVLSSDWLNMGSSPG*LGRCGSRCRFRLSG
Trigger: GCCAGAGAGCCTGAACCTGCACCGAGACCCACAGCGGCCCAGCAAGCCGGGAGAGCTCCCCATGTTCAGCCAGTCAGAGCTGAGGACCAT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020231.10
ENSMUST00000105307.8
CDS CAA 90 bp CCCTCGGAGTCTTCCACCAGGGCAGTGTTGACGGTGTCAAAGCTGTaGTGCCGGCTGTGCATGGAGTCAGCTAAAGGCGGCCAGCAGCTC +
Preference number: 6 (lower is better)
Translates to: PSESSTRAVLTVSKL*CRLCMESAKGGQQL
Trigger: GAGCTGCTGGCCGCCTTTAGCTGACTCCATGCACAGCCGGCACAACAGCTTTGACACCGTCAACACTGCCCTGGTGGAAGACTCCGAGGG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020231.10
ENSMUST00000105307.8
CDS CAA 90 bp CCCTGCTTGTGGTGCATGGGCGTGCCATTACCGTGGTGCTTCGCATaGAGGGGCTGTAGATGGTGCATCGCCCGGGACACAAGGTCACTG +
Preference number: 6 (lower is better)
Translates to: PCLWCMGVPLPWCFA*RGCRWCIARDTRSL
Trigger: CAGTGACCTTGTGTCCCGGGCGATGCACCATCTACAGCCCCTCAATGCGAAGCACCACGGTAATGGCACGCCCATGCACCACAAGCAGGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020231.10
ENSMUST00000105307.8
CDS CAA 90 bp AGAGGGGGCAGCACGAGGAAGGGCCTTTCCACCTGGAGGTTGACCTaGGAAGGTTCCACGTTGGGATTCTCCCACTCCATCTGCGGGCAG +
Preference number: 6 (lower is better)
Translates to: RGGSTRKGLSTWRLT*EGSTLGFSHSICGQ
Trigger: CTGCCCGCAGATGGAGTGGGAGAATCCCAACGTGGAACCTTCCAAGGTCAACCTCCAGGTGGAAAGGCCCTTCCTCGTGCTGCCCCCTCT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000020231.10
ENSMUST00000105307.8
CDS TCA 72 bp AGTCCAGCCCCTCGGAGTCTTCCACCAGGGCAGTGTTaGCGGTGTCAAAGCTGTTGTGCCGGCTGTGCATGG +
Preference number: 6 (lower is better)
Translates to: SPAPRSLPPGQC*RCQSCCAGCAW
Trigger: CCATGCACAGCCGGCACAACAGCTTTGACACCGTCAACACTGCCCTGGTGGAAGACTCCGAGGGGCTGGACT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020231.10
ENSMUST00000105307.8
CDS TCA 72 bp GGTGCATGGGCGTGCCATTACCGTGGTGCTTCGCATTaGGGGGCTGTAGATGGTGCATCGCCCGGGACACAA +
Preference number: 6 (lower is better)
Translates to: GAWACHYRGASH*GAVDGASPGTQ
Trigger: TTGTGTCCCGGGCGATGCACCATCTACAGCCCCTCAATGCGAAGCACCACGGTAATGGCACGCCCATGCACC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000020231.10
ENSMUST00000105307.8
CDS TCA 72 bp CGTTGGGATTCTCCCACTCCATCTGCGGGCAGTGCATaGAGTAGCAGAGCGTGTACAGGGCCTCTGGCTCCC +
Preference number: 6 (lower is better)
Translates to: RWDSPTPSAGSA*SSRACTGPLAP
Trigger: GGGAGCCAGAGGCCCTGTACACGCTCTGCTACTTCATGCACTGCCCGCAGATGGAGTGGGAGAATCCCAACG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020231.10
ENSMUST00000105307.8
CDS GCA 72 bp GCAGTGTTGACGGTGTCAAAGCTGTTGTGCCGGCTGTaGATGGAGTCAGCTAAAGGCGGCCAGCAGCTCCCG +
Preference number: 6 (lower is better)
Translates to: AVLTVSKLLCRL*MESAKGGQQLP
Trigger: CGGGAGCTGCTGGCCGCCTTTAGCTGACTCCATGCACAGCCGGCACAACAGCTTTGACACCGTCAACACTGC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020231.10
ENSMUST00000105307.8
CDS GCA 72 bp CCCTGCTTGTGGTGCATGGGCGTGCCATTACCGTGGTaGTTCGCATTGAGGGGCTGTAGATGGTGCATCGCC +
Preference number: 6 (lower is better)
Translates to: PCLWCMGVPLPW*FALRGCRWCIA
Trigger: GGCGATGCACCATCTACAGCCCCTCAATGCGAAGCACCACGGTAATGGCACGCCCATGCACCACAAGCAGGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020231.10
ENSMUST00000105307.8
CDS CCA 72 bp ACGCCGGGTGAGAGTCAGAACAGCACAGAGACAAGTTaGAGGAGCGCACAGAGTCCGCCGCGCCACCATAAC +
Preference number: 6 (lower is better)
Translates to: TPGESQNSTETS*RSAQSPPRHHN
Trigger: GTTATGGTGGCGCGGCGGACTCTGTGCGCTCCTCCAACTTGTCTCTGTGCTGTTCTGACTCTCACCCGGCGT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020231.10
ENSMUST00000105307.8
CDS CCA 72 bp GCCCCCTGCTTGTGGTGCATGGGCGTGCCATTACCGTaGTGCTTCGCATTGAGGGGCTGTAGATGGTGCATC +
Preference number: 6 (lower is better)
Translates to: APCLWCMGVPLP*CFALRGCRWCI
Trigger: GATGCACCATCTACAGCCCCTCAATGCGAAGCACCACGGTAATGGCACGCCCATGCACCACAAGCAGGGGGC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000020231.10
ENSMUST00000105307.8
CDS CCA 72 bp GCAGTGCATGAAGTAGCAGAGCGTGTACAGGGCCTCTaGCTCCCAGTAGAGCGCCCCCTGCTTGTGGTGCAT +
Preference number: 6 (lower is better)
Translates to: AVHEVAERVQGL*LPVERPLLVVH
Trigger: ATGCACCACAAGCAGGGGGCGCTCTACTGGGAGCCAGAGGCCCTGTACACGCTCTGCTACTTCATGCACTGC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000020231.10
ENSMUST00000105307.8
CDS CCA 72 bp AGGAAGGGCCTGGAAACTCCTGAGTGCGAGAGCCTTTaGAGACATCCTGACCCCACTGGTGACCCCGGGTCA +
Preference number: 6 (lower is better)
Translates to: RKGLETPECESL*RHPDPTGDPGS
Trigger: TGACCCGGGGTCACCAGTGGGGTCAGGATGTCTCCAAAGGCTCTCGCACTCAGGAGTTTCCAGGCCCTTCCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000105306.3
CDS CAA 72 bp CAGTCCAGCCCCTCGGAGTCTTCCACCAGGGCAGTGTaGACGGTGTCAAAGCTGTTGTGCCGGCTGTGCATG +
Preference number: 6 (lower is better)
Translates to: QSSPSESSTRAV*TVSKLLCRLCM
Trigger: CATGCACAGCCGGCACAACAGCTTTGACACCGTCAACACTGCCCTGGTGGAAGACTCCGAGGGGCTGGACTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020231.10
ENSMUST00000105307.8
CDS CAA 72 bp TGGTGCATGGGCGTGCCATTACCGTGGTGCTTCGCATaGAGGGGCTGTAGATGGTGCATCGCCCGGGACACA +
Preference number: 6 (lower is better)
Translates to: WCMGVPLPWCFA*RGCRWCIARDT
Trigger: TGTGTCCCGGGCGATGCACCATCTACAGCCCCTCAATGCGAAGCACCACGGTAATGGCACGCCCATGCACCA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020231.10
ENSMUST00000105307.8
CDS TCA 72 bp GGGGCAGCACGAGGAAGGGCCTTTCCACCTGGAGGTTaGCCTTGGAAGGTTCCACGTTGGGATTCTCCCACT +
Preference number: 6 (lower is better)
Translates to: GAARGRAFPPGG*PWKVPRWDSPT
Trigger: AGTGGGAGAATCCCAACGTGGAACCTTCCAAGGTCAACCTCCAGGTGGAAAGGCCCTTCCTCGTGCTGCCCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020231.10
ENSMUST00000105307.8
CDS GCA 72 bp TCCACCAGGGCAGTGTTGACGGTGTCAAAGCTGTTGTaGCGGCTGTGCATGGAGTCAGCTAAAGGCGGCCAG +
Preference number: 6 (lower is better)
Translates to: STRAVLTVSKLL*RLCMESAKGGQ
Trigger: CTGGCCGCCTTTAGCTGACTCCATGCACAGCCGGCACAACAGCTTTGACACCGTCAACACTGCCCTGGTGGA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020231.10
ENSMUST00000105307.8
CDS GCA 72 bp GTCCGTCCACAATTCAGCATCCGGAAGCCCAAGTCCTaGTTGAACTTGGCTTCGATGGCCACGGCGTCCAGC +
Preference number: 6 (lower is better)
Translates to: VRPQFSIRKPKS*LNLASMATASS
Trigger: GCTGGACGCCGTGGCCATCGAAGCCAAGTTCAAGCAGGACTTGGGCTTCCGGATGCTGAATTGTGGACGGAC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020231.10
ENSMUST00000105306.3
ENSMUST00000105307.8
CDS CCA 72 bp AGTGAGCCGCCAGGCCCCAGGACAGTACGATCTCCATaGCACTCTGGATCTCGTACTTGGTGCACTTGGCGA +
Preference number: 6 (lower is better)
Translates to: SEPPGPRTVRSP*HSGSRTWCTWR
Trigger: TCGCCAAGTGCACCAAGTACGAGATCCAGAGTGCCATGGAGATCGTACTGTCCTGGGGCCTGGCGGCTCACT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020231.10
ENSMUST00000105307.8
CDS CCA 72 bp CCATTACCGTGGTGCTTCGCATTGAGGGGCTGTAGATaGTGCATCGCCCGGGACACAAGGTCACTGAGCTCG +
Preference number: 6 (lower is better)
Translates to: PLPWCFALRGCR*CIARDTRSLSS
Trigger: CGAGCTCAGTGACCTTGTGTCCCGGGCGATGCACCATCTACAGCCCCTCAATGCGAAGCACCACGGTAATGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020231.10
ENSMUST00000105307.8
CDS CAA 90 bp AGGTCGGTCCGTCCACAATTCAGCATCCGGAAGCCCAAGTCCTGCTaGAACTTGGCTTCGATGGCCACGGCGTCCAGCTTCCGAGAAGCA +
Preference number: 6 (lower is better)
Translates to: RSVRPQFSIRKPKSC*NLASMATASSFREA
Trigger: TGCTTCTCGGAAGCTGGACGCCGTGGCCATCGAAGCCAAGTTCAAGCAGGACTTGGGCTTCCGGATGCTGAATTGTGGACGGACCGACCT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020231.10
ENSMUST00000105306.3
ENSMUST00000105307.8
CDS TCA 72 bp GTCCACAATTCAGCATCCGGAAGCCCAAGTCCTGCTTaGACTTGGCTTCGATGGCCACGGCGTCCAGCTTCC +
Preference number: 6 (lower is better)
Translates to: VHNSASGSPSPA*TWLRWPRRPAS
Trigger: GGAAGCTGGACGCCGTGGCCATCGAAGCCAAGTTCAAGCAGGACTTGGGCTTCCGGATGCTGAATTGTGGAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020231.10
ENSMUST00000105306.3
ENSMUST00000105307.8
CDS GCA 72 bp AAGAGCCCCCAGATTTCCGAGTCGTTGTTGACCGTGTaGTCCAGGGTCTCCACGGTGAATTTGGGCGCTTCG +
Preference number: 6 (lower is better)
Translates to: KSPQISESLLTV*SRVSTVNLGAS
Trigger: CGAAGCGCCCAAATTCACCGTGGAGACCCTGGAGCACACGGTCAACAACGACTCGGAAATCTGGGGGCTCTT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000020231.10
ENSMUST00000105307.8
CDS CCA 72 bp AGTTCTCCTCGCCATGCTCCACAGAGCCTTCCACCTTaGCCCCAGCATCCAGGAGGAGCTGAACTACAGGAA +
Preference number: 6 (lower is better)
Translates to: SSPRHAPQSLPP*PQHPGGAELQE
Trigger: TTCCTGTAGTTCAGCTCCTCCTGGATGCTGGGGCCAAGGTGGAAGGCTCTGTGGAGCATGGCGAGGAGAACT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020231.10
ENSMUST00000105306.3
ENSMUST00000105307.8
CDS CAA 72 bp TCTTCCACCAGGGCAGTGTTGACGGTGTCAAAGCTGTaGTGCCGGCTGTGCATGGAGTCAGCTAAAGGCGGC +
Preference number: 6 (lower is better)
Translates to: SSTRAVLTVSKL*CRLCMESAKGG
Trigger: GCCGCCTTTAGCTGACTCCATGCACAGCCGGCACAACAGCTTTGACACCGTCAACACTGCCCTGGTGGAAGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020231.10
ENSMUST00000105307.8
CDS CAA 72 bp CGTCCACAATTCAGCATCCGGAAGCCCAAGTCCTGCTaGAACTTGGCTTCGATGGCCACGGCGTCCAGCTTC +
Preference number: 6 (lower is better)
Translates to: RPQFSIRKPKSC*NLASMATASSF
Trigger: GAAGCTGGACGCCGTGGCCATCGAAGCCAAGTTCAAGCAGGACTTGGGCTTCCGGATGCTGAATTGTGGACG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020231.10
ENSMUST00000105306.3
ENSMUST00000105307.8
CDS CAA 90 bp GTCCGTCCACAATTCAGCATCCGGAAGCCCAAGTCCTGCTTGAACTaGGCTTCGATGGCCACGGCGTCCAGCTTCCGAGAAGCACAAAAG +
Preference number: 6 (lower is better)
Translates to: VRPQFSIRKPKSCLN*ASMATASSFREAQK
Trigger: CTTTTGTGCTTCTCGGAAGCTGGACGCCGTGGCCATCGAAGCCAAGTTCAAGCAGGACTTGGGCTTCCGGATGCTGAATTGTGGACGGAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020231.10
ENSMUST00000105306.3
ENSMUST00000105307.8
CDS GCA 72 bp GTGTTGATTCCATCCGGCCCCAGCAAAGACACTGCCTaGTTCACCAGGTCGGTCCGTCCACAATTCAGCATC +
Preference number: 6 (lower is better)
Translates to: VLIPSGPSKDTA*FTRSVRPQFSI
Trigger: GATGCTGAATTGTGGACGGACCGACCTGGTGAAGCAGGCAGTGTCTTTGCTGGGGCCGGATGGAATCAACAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020231.10
ENSMUST00000105306.3
ENSMUST00000105307.8
CDS GCA 72 bp CATGGTGTTGATTCCATCCGGCCCCAGCAAAGACACTaGCTGCTTCACCAGGTCGGTCCGTCCACAATTCAG +
Preference number: 6 (lower is better)
Translates to: HGVDSIRPQQRH*LLHQVGPSTIQ
Trigger: CTGAATTGTGGACGGACCGACCTGGTGAAGCAGGCAGTGTCTTTGCTGGGGCCGGATGGAATCAACACCATG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020231.10
ENSMUST00000105306.3
ENSMUST00000105307.8
CDS GCA 72 bp TATCGCTCTTCTCCTTCTCTGGCTGAGCGAGCAGTTTaGGGAACACATTCCTGTGTCCATGGGCTGCGGCCT +
Preference number: 6 (lower is better)
Translates to: YRSSPSLAERAV*GTHSCVHGLRP
Trigger: AGGCCGCAGCCCATGGACACAGGAATGTGTTCCGCAAACTGCTCGCTCAGCCAGAGAAGGAGAAGAGCGATA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000105306.3
ENSMUST00000105307.8
CDS CAA 72 bp CTTTCCACCTGGAGGTTGACCTTGGAAGGTTCCACGTaGGGATTCTCCCACTCCATCTGCGGGCAGTGCATG +
Preference number: 6 (lower is better)
Translates to: LSTWRLTLEGST*GFSHSICGQCM
Trigger: CATGCACTGCCCGCAGATGGAGTGGGAGAATCCCAACGTGGAACCTTCCAAGGTCAACCTCCAGGTGGAAAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020231.10
ENSMUST00000105307.8
CDS CAA 72 bp CAATTCAGCATCCGGAAGCCCAAGTCCTGCTTGAACTaGGCTTCGATGGCCACGGCGTCCAGCTTCCGAGAA +
Preference number: 6 (lower is better)
Translates to: QFSIRKPKSCLN*ASMATASSFRE
Trigger: TTCTCGGAAGCTGGACGCCGTGGCCATCGAAGCCAAGTTCAAGCAGGACTTGGGCTTCCGGATGCTGAATTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020231.10
ENSMUST00000105306.3
ENSMUST00000105307.8
CDS TCA 72 bp ACATCAAGGGGGTCATACCCTGTTCGCTCATGGTGTTaGTTCCATCCGGCCCCAGCAAAGACACTGCCTGCT +
Preference number: 6 (lower is better)
Translates to: TSRGSYPVRSWC*FHPAPAKTLPA
Trigger: AGCAGGCAGTGTCTTTGCTGGGGCCGGATGGAATCAACACCATGAGCGAACAGGGTATGACCCCCTTGATGT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000020231.10
ENSMUST00000105306.3
ENSMUST00000105307.8
CDS CCA 72 bp CTCCTCCAGGGACAGGATATCGCTCTTCTCCTTCTCTaGCTGAGCGAGCAGTTTGCGGAACACATTCCTGTG +
Preference number: 6 (lower is better)
Translates to: LLQGQDIALLLL*LSEQFAEHIPV
Trigger: CACAGGAATGTGTTCCGCAAACTGCTCGCTCAGCCAGAGAAGGAGAAGAGCGATATCCTGTCCCTGGAGGAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000105306.3
ENSMUST00000105307.8
CDS CAA 72 bp TACATCAAGGGGGTCATACCCTGTTCGCTCATGGTGTaGATTCCATCCGGCCCCAGCAAAGACACTGCCTGC +
Preference number: 6 (lower is better)
Translates to: YIKGVIPCSLMV*IPSGPSKDTAC
Trigger: GCAGGCAGTGTCTTTGCTGGGGCCGGATGGAATCAACACCATGAGCGAACAGGGTATGACCCCCTTGATGTA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000020231.10
ENSMUST00000105306.3
ENSMUST00000105307.8
CDS TCA 72 bp TCCAGGGACAGGATATCGCTCTTCTCCTTCTCTGGCTaGGCGAGCAGTTTGCGGAACACATTCCTGTGTCCA +
Preference number: 6 (lower is better)
Translates to: SRDRISLFSFSG*ASSLRNTFLCP
Trigger: TGGACACAGGAATGTGTTCCGCAAACTGCTCGCTCAGCCAGAGAAGGAGAAGAGCGATATCCTGTCCCTGGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000105306.3
ENSMUST00000105307.8
CDS GCA 72 bp TCCTTGAGCAAACACTGGATGAGAGGTCTGCGGTGTTaGTGGAAGGCAATCCGAAGTGACTCCAGCCATGTG +
Preference number: 6 (lower is better)
Translates to: SLSKHWMRGLRC*WKAIRSDSSHV
Trigger: CACATGGCTGGAGTCACTTCGGATTGCCTTCCAGCAACACCGCAGACCTCTCATCCAGTGTTTGCTCAAGGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020231.10
ENSMUST00000105306.3
ENSMUST00000105307.8
CDS CCA 72 bp CAGAGCCGTCCAATGGCGGGTCTCGGGGTGGACGGATaGATATTTATGAGGAGTACTGACAACCTCCACATT +
Preference number: 6 (lower is better)
Translates to: QSRPMAGLGVDG*IFMRSTDNLHI
Trigger: AATGTGGAGGTTGTCAGTACTCCTCATAAATATCCATCCGTCCACCCCGAGACCCGCCATTGGACGGCTCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020231.10
ENSMUST00000105306.3
ENSMUST00000105307.8
CDS TCA 72 bp CAATGGCGGGTCTCGGGGTGGACGGATGGATATTTATaGGGAGTACTGACAACCTCCACATTCAGGTCAGCT +
Preference number: 6 (lower is better)
Translates to: QWRVSGWTDGYL*GVLTTSTFRSA
Trigger: AGCTGACCTGAATGTGGAGGTTGTCAGTACTCCTCATAAATATCCATCCGTCCACCCCGAGACCCGCCATTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020231.10
ENSMUST00000105306.3
ENSMUST00000105307.8
CDS CCA 72 bp TTGAGCAAACACTGGATGAGAGGTCTGCGGTGTTGCTaGAAGGCAATCCGAAGTGACTCCAGCCATGTGTGT +
Preference number: 6 (lower is better)
Translates to: LSKHWMRGLRCC*KAIRSDSSHVC
Trigger: ACACACATGGCTGGAGTCACTTCGGATTGCCTTCCAGCAACACCGCAGACCTCTCATCCAGTGTTTGCTCAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020231.10
ENSMUST00000105306.3
ENSMUST00000105307.8
CDS TCA 72 bp GAAGTGACTCTGGGCCACCGTAGTAGAGATACTGCATaGCGAGCTGGAAGATGGGATACTTCACGTAGCCAA +
Preference number: 6 (lower is better)
Translates to: EVTLGHRSRDTA*RAGRWDTSRSQ
Trigger: TTGGCTACGTGAAGTATCCCATCTTCCAGCTCGTCATGCAGTATCTCTACTACGGTGGCCCAGAGTCACTTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000105306.3
ENSMUST00000105307.8
CDS CCA 72 bp TGGGCTGCGGCCTGGCTGAAAGAGTTCATATCACCCTaGGGGGTTGTAGAAATTCCATTCCTGTACATGGTT +
Preference number: 6 (lower is better)
Translates to: WAAAWLKEFISP*GVVEIPFLYMV
Trigger: AACCATGTACAGGAATGGAATTTCTACAACCCCCCAGGGTGATATGAACTCTTTCAGCCAGGCCGCAGCCCA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000105306.3
ENSMUST00000105307.8
CDS GCA 72 bp GCTGGAAGATGGGATACTTCACGTAGCCAATCTCTATaGAGGTGTTGTCATTTGTTGGCTTGCTGGAGAGGA +
Preference number: 6 (lower is better)
Translates to: AGRWDTSRSQSL*RCCHLLACWRG
Trigger: TCCTCTCCAGCAAGCCAACAAATGACAACACCTGCATAGAGATTGGCTACGTGAAGTATCCCATCTTCCAGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000105306.3
ENSMUST00000105307.8
CDS GCA 72 bp GTAGATATCCACACAGTTGTCAGTATTGATGCTTTTTaGACAGATAATCTCACAGTGTCGCTGCAGAGCCTC +
Preference number: 6 (lower is better)
Translates to: VDIHTVVSIDAF*TDNLTVSLQSL
Trigger: GAGGCTCTGCAGCGACACTGTGAGATTATCTGTGCAAAAAGCATCAATACTGACAACTGTGTGGATATCTAC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000105306.3
ENSMUST00000105307.8