Pregenerated sensors for BTBD10 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000038187

Ensembl transcript IDs: ENSMUST00000047091.14, ENSMUST00000117577.8, ENSMUST00000119278.8, ENSMUST00000135510.2

Found 9 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
3UTR TCA 72 bp	GTGACTCACTCTAATAGGGCTGCAGGGCTCTGGAGATaGGTGAACCAACACTATAAGCATCAAATTTTATCC	+
Preference number: 3 (lower is better) Translates to: VTHSNRAAGLWR*VNQHYKHQILS Trigger: GGATAAAATTTGATGCTTATAGTGTTGGTTCACTCATCTCCAGAGCCCTGCAGCCCTATTAGAGTGAGTCAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000047091.14 ENSMUST00000117577.8 ENSMUST00000119278.8 ENSMUST00000135510.2
CDS CCA 90 bp	GCTCATGGAGCCATTTGGGGATGCTCTTTGAGGACGAGGACTGCTTaGACGAGAAGAACTATGGTCTTTTTCTCGTTCAATATGATGCTG	+
Preference number: 5 (lower is better) Translates to: AHGAIWGCSLRTRTA*TRRTMVFFSFNMML Trigger: CAGCATCATATTGAACGAGAAAAAGACCATAGTTCTTCTCGTCCAAGCAGTCCTCGTCCTCAAAGAGCATCCCCAAATGGCTCCATGAGC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENSMUST00000047091.14 ENSMUST00000117577.8 ENSMUST00000119278.8 ENSMUST00000135510.2
CDS GCA 90 bp	CACTGCTCATGGAGCCATTTGGGGATGCTCTTTGAGGACGAGGACTaGTTGGACGAGAAGAACTATGGTCTTTTTCTCGTTCAATATGAT	+
Preference number: 5 (lower is better) Translates to: HCSWSHLGMLFEDED*LDEKNYGLFLVQYD Trigger: ATCATATTGAACGAGAAAAAGACCATAGTTCTTCTCGTCCAAGCAGTCCTCGTCCTCAAAGAGCATCCCCAAATGGCTCCATGAGCAGTG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENSMUST00000047091.14 ENSMUST00000117577.8 ENSMUST00000119278.8 ENSMUST00000135510.2
CDS CCA 90 bp	ATAAAGTTTACGAGGTCTACTATGCAATTTCCGATCCCAATTCTCTaGATCACTGGAGTTACTGTCATAGGGATGAGGCCGTCCTGCCAT	+
Preference number: 5 (lower is better) Translates to: IKFTRSTMQFPIPIL*ITGVTVIGMRPSCH Trigger: ATGGCAGGACGGCCTCATCCCTATGACAGTAACTCCAGTGATCCAGAGAATTGGGATCGGAAATTGCATAGTAGACCTCGTAAACTTTAT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000047091.14 ENSMUST00000135510.2
CDS CCA 72 bp	TACTATGCAATTTCCGATCCCAATTCTCTGGATCACTaGAGTTACTGTCATAGGGATGAGGCCGTCCTGCCA	+
Preference number: 6 (lower is better) Translates to: YYAISDPNSLDH*SYCHRDEAVLP Trigger: TGGCAGGACGGCCTCATCCCTATGACAGTAACTCCAGTGATCCAGAGAATTGGGATCGGAAATTGCATAGTA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000047091.14 ENSMUST00000135510.2
CDS CCA 72 bp	ACGAGGTCTACTATGCAATTTCCGATCCCAATTCTCTaGATCACTGGAGTTACTGTCATAGGGATGAGGCCG	+
Preference number: 6 (lower is better) Translates to: TRSTMQFPIPIL*ITGVTVIGMRP Trigger: CGGCCTCATCCCTATGACAGTAACTCCAGTGATCCAGAGAATTGGGATCGGAAATTGCATAGTAGACCTCGT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000047091.14 ENSMUST00000135510.2
CDS CAA 90 bp	TGCTCATGGAGCCATTTGGGGATGCTCTTTGAGGACGAGGACTGCTaGGACGAGAAGAACTATGGTCTTTTTCTCGTTCAATATGATGCT	+
Preference number: 6 (lower is better) Translates to: CSWSHLGMLFEDEDC*DEKNYGLFLVQYDA Trigger: AGCATCATATTGAACGAGAAAAAGACCATAGTTCTTCTCGTCCAAGCAGTCCTCGTCCTCAAAGAGCATCCCCAAATGGCTCCATGAGCA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENSMUST00000047091.14 ENSMUST00000117577.8 ENSMUST00000119278.8 ENSMUST00000135510.2
CDS CCA 72 bp	GCCATTTGGGGATGCTCTTTGAGGACGAGGACTGCTTaGACGAGAAGAACTATGGTCTTTTTCTCGTTCAAT	+
Preference number: 6 (lower is better) Translates to: AIWGCSLRTRTA*TRRTMVFFSFN Trigger: ATTGAACGAGAAAAAGACCATAGTTCTTCTCGTCCAAGCAGTCCTCGTCCTCAAAGAGCATCCCCAAATGGC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENSMUST00000047091.14 ENSMUST00000117577.8 ENSMUST00000119278.8 ENSMUST00000135510.2
CDS CAA 72 bp	AGCCATTTGGGGATGCTCTTTGAGGACGAGGACTGCTaGGACGAGAAGAACTATGGTCTTTTTCTCGTTCAA	+
Preference number: 6 (lower is better) Translates to: SHLGMLFEDEDC*DEKNYGLFLVQ Trigger: TTGAACGAGAAAAAGACCATAGTTCTTCTCGTCCAAGCAGTCCTCGTCCTCAAAGAGCATCCCCAAATGGCT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENSMUST00000047091.14 ENSMUST00000117577.8 ENSMUST00000119278.8 ENSMUST00000135510.2