Pregenerated sensors for BSX (Mus musculus)
Ensembl gene IDs: ENSMUSG00000054360Ensembl transcript IDs: ENSMUST00000067375.5
Found 83 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | AGTCTGGAGTCTCCGCGAGTCTTCCCACCCGGGAAGAACCCGGTCTaGCCCCGCGGCCTCCTCGCCCGGGTCTCCCTTCCCAGCCTGGCC | + |
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Preference number: 1 (lower is better) Translates to: SLESPRVFPPGKNPV*PRGLLARVSLPSLA Trigger: GGCCAGGCTGGGAAGGGAGACCCGGGCGAGGAGGCCGCGGGGCCAGACCGGGTTCTTCCCGGGTGGGAAGACTCGCGGAGACTCCAGACT 72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000067375.5 |
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| 3UTR GCA 90 bp | GAACCGTTGGACGGGGTGGAGGCATGGGAAGGAGTCGCTGGCGGCTaGAAGTTGCTAAGTGGACTGCGCTTGCCTTTCTTTCTTCCAGCC | + |
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Preference number: 1 (lower is better) Translates to: EPLDGVEAWEGVAGG*KLLSGLRLPFFLPA Trigger: GGCTGGAAGAAAGAAAGGCAAGCGCAGTCCACTTAGCAACTTGCAGCCGCCAGCGACTCCTTCCCATGCCTCCACCCCGTCCAACGGTTC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000067375.5 |
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| 3UTR GCA 90 bp | AGTGCAACAAGTTCAGGAAGCAGAAATTGCGCTGTGGACGTTCTCTaGCCACAGTTCTGTAGGGAGGGGATTGTGGAGGCCTCCAGCCCT | + |
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Preference number: 1 (lower is better) Translates to: SATSSGSRNCAVDVL*PQFCREGIVEASSP Trigger: AGGGCTGGAGGCCTCCACAATCCCCTCCCTACAGAACTGTGGGCAGAGAACGTCCACAGCGCAATTTCTGCTTCCTGAACTTGTTGCACT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000067375.5 |
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| 3UTR CCA 90 bp | TGCGGGACAAGAGTGCAACAAGTTCAGGAAGCAGAAATTGCGCTGTaGACGTTCTCTGCCCACAGTTCTGTAGGGAGGGGATTGTGGAGG | + |
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Preference number: 1 (lower is better) Translates to: CGTRVQQVQEAEIAL*TFSAHSSVGRGLWR Trigger: CCTCCACAATCCCCTCCCTACAGAACTGTGGGCAGAGAACGTCCACAGCGCAATTTCTGCTTCCTGAACTTGTTGCACTCTTGTCCCGCA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000067375.5 |
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| 3UTR GCA 90 bp | GAAGGGTTGCGGGACAAGAGTGCAACAAGTTCAGGAAGCAGAAATTaGGCTGTGGACGTTCTCTGCCCACAGTTCTGTAGGGAGGGGATT | + |
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Preference number: 1 (lower is better) Translates to: EGLRDKSATSSGSRN*AVDVLCPQFCREGI Trigger: AATCCCCTCCCTACAGAACTGTGGGCAGAGAACGTCCACAGCGCAATTTCTGCTTCCTGAACTTGTTGCACTCTTGTCCCGCAACCCTTC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000067375.5 |
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| 3UTR TCA 90 bp | GGATTTCATGGCTGCATTCCTCAACTTCCGCAAGCCTCAGTTTCCTaGTCTGTGGTTCACACCCCCTTTAATTACAGAGCAAACATTCTG | + |
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Preference number: 1 (lower is better) Translates to: GFHGCIPQLPQASVS*SVVHTPFNYRANIL Trigger: CAGAATGTTTGCTCTGTAATTAAAGGGGGTGTGAACCACAGATCAGGAAACTGAGGCTTGCGGAAGTTGAGGAATGCAGCCATGAAATCC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000067375.5 |
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| 3UTR CCA 90 bp | ACAACCCGAGGACAATCGCTTAAAATCTCTTTAGTCTTTGGGACATaGAAGGGTTGCGGGACAAGAGTGCAACAAGTTCAGGAAGCAGAA | + |
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Preference number: 1 (lower is better) Translates to: TTRGQSLKISLVFGT*KGCGTRVQQVQEAE Trigger: TTCTGCTTCCTGAACTTGTTGCACTCTTGTCCCGCAACCCTTCCATGTCCCAAAGACTAAAGAGATTTTAAGCGATTGTCCTCGGGTTGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000067375.5 |
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| 3UTR-3UTR CCA 90 bp | TCCGATGGGCGCTGCCTGGATCCCGGCATAGCCCCAGACACTTGGTTCCTTTATGAGCGACCGCCTAGGTaGGGAGGCCGCGGGGACAGA | + |
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Preference number: 2 (lower is better) Translates to: SDGRCLDPGIAPDTWFLYERPPR*GGRGDR Trigger: TCTGTCCCCGCGGCCTCCCCACCTAGGCGGTCGCTC...ATAAAGGAACCAAGTGTCTGGGGCTATGCCGGGATCCAGGCAGCGCCCATCGGA 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000067375.5 |
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| 3UTR CAA 90 bp | TGGAGGGGTTCTGCATTGGCGGCGCGCGGAGCTGGAGGCGCTCGGTaGAATTGTACCACCGTGAGCCCAGCTGCTAGTTTGAGCAGCGAC | + |
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Preference number: 2 (lower is better) Translates to: WRGSALAARGAGGAR*NCTTVSPAASLSSD Trigger: GTCGCTGCTCAAACTAGCAGCTGGGCTCACGGTGGTACAATTCAACCGAGCGCCTCCAGCTCCGCGCGCCGCCAATGCAGAACCCCTCCA 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000067375.5 |
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| 3UTR-3UTR CCA 90 bp | CCCCACCCCCAGGGCTGCTCTGTTGGAGACGCGTCTCGCTTAGTTCATTGGCATGTAGGGAGGGGATTGTaGAGGCCTCCAGCCCTTCAG | + |
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Preference number: 2 (lower is better) Translates to: PHPQGCSVGDASRLVHWHVGRGL*RPPALQ Trigger: CTGAAGGGCTGGAGGCCTCCACAATCCCCTCCCTAC...ATGCCAATGAACTAAGCGAGACGCGTCTCCAACAGAGCAGCCCTGGGGGTGGGG 61% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000067375.5 |
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| 3UTR-3UTR TCA 90 bp | TCCGATGGGCGCTGCCTGGATCCCGGCATAGCCCCAGACACTTGGTTCCTTTATGCCGCGGGGACAGAGTaGCAGAGCTGGATGACAAGT | + |
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Preference number: 2 (lower is better) Translates to: SDGRCLDPGIAPDTWFLYAAGTE*QSWMTS Trigger: ACTTGTCATCCAGCTCTGTCACTCTGTCCCCGCGGC...ATAAAGGAACCAAGTGTCTGGGGCTATGCCGGGATCCAGGCAGCGCCCATCGGA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000067375.5 |
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| 3UTR CAA 90 bp | TGGGAAGGAGTCGCTGGCGGCTGCAAGTTGCTAAGTGGACTGCGCTaGCCTTTCTTTCTTCCAGCCCAGGTCGCAGGAGCAGTCTGGAGT | + |
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Preference number: 2 (lower is better) Translates to: WEGVAGGCKLLSGLR*PFFLPAQVAGAVWS Trigger: ACTCCAGACTGCTCCTGCGACCTGGGCTGGAAGAAAGAAAGGCAAGCGCAGTCCACTTAGCAACTTGCAGCCGCCAGCGACTCCTTCCCA 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000067375.5 |
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| 3UTR-3UTR CCA 90 bp | GAAGGGTTGCGGGACAAGAGTGCAACAAGTTCAGGAAGCAGAAATTGCGCTGTGGACGGGGTGGAGGCATaGGAAGGAGTCGCTGGCGGC | + |
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Preference number: 2 (lower is better) Translates to: EGLRDKSATSSGSRNCAVDGVEA*EGVAGG Trigger: GCCGCCAGCGACTCCTTCCCATGCCTCCACCCCGTC...CACAGCGCAATTTCTGCTTCCTGAACTTGTTGCACTCTTGTCCCGCAACCCTTC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000067375.5 |
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| 3UTR-3UTR GCA 90 bp | CCCGAGGAGGAGGAACACGCTGCTAAGTTCACTCCTTTCCAGTCTTCAGGGCTCGGAGTCGCTGGCGGCTaGAAGTTGCTAAGTGGACTG | + |
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Preference number: 2 (lower is better) Translates to: PEEEEHAAKFTPFQSSGLGVAGG*KLLSGL Trigger: CAGTCCACTTAGCAACTTGCAGCCGCCAGCGACTCC...GAGCCCTGAAGACTGGAAAGGAGTGAACTTAGCAGCGTGTTCCTCCTCCTCGGG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000067375.5 |
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| 3UTR-3UTR GCA 90 bp | GAAGGGTTGCGGGACAAGAGTGCAACAAGTTCAGGAAGCAGAAATTGCGCTGTGAGGATGGAGGGGTTCTaGATTGGCGGCGCGCGGAGC | + |
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Preference number: 2 (lower is better) Translates to: EGLRDKSATSSGSRNCAVRMEGF*IGGARS Trigger: GCTCCGCGCGCCGCCAATGCAGAACCCCTCCATCCT...CACAGCGCAATTTCTGCTTCCTGAACTTGTTGCACTCTTGTCCCGCAACCCTTC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000067375.5 |
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| 3UTR-3UTR CCA 90 bp | GCAAACTGCAAGTCAAGGCACCGGCACCAGAAAGTAAATAAACAGAAGAAGAGAGGCGGCGCGCGGAGCTaGAGGCGCTCGGTTGAATTG | + |
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Preference number: 2 (lower is better) Translates to: ANCKSRHRHQKVNKQKKRGGARS*RRSVEL Trigger: CAATTCAACCGAGCGCCTCCAGCTCCGCGCGCCGCC...TCTCTTCTTCTGTTTATTTACTTTCTGGTGCCGGTGCCTTGACTTGCAGTTTGC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000067375.5 |
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| 3UTR-3UTR TCA 90 bp | GAAGGGTTGCGGGACAAGAGTGCAACAAGTTCAGGAAGCAGAAATTGCGCTGTGTGGATGACAAGTGGCTaGGACATGAGGATGGAGGGG | + |
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Preference number: 2 (lower is better) Translates to: EGLRDKSATSSGSRNCAVWMTSG*DMRMEG Trigger: CCCCTCCATCCTCATGTCTCAGCCACTTGTCATCCA...CACAGCGCAATTTCTGCTTCCTGAACTTGTTGCACTCTTGTCCCGCAACCCTTC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000067375.5 |
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| 3UTR-3UTR CCA 90 bp | TTATTTATCTCTGGTCCCGAGGAGGAGGAACACGCTGCTAAGTTCACTCCTTTCAACCGTTGGACGGGGTaGAGGCATGGGAAGGAGTCG | + |
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Preference number: 2 (lower is better) Translates to: LFISGPEEEEHAAKFTPFNRWTG*RHGKES Trigger: CGACTCCTTCCCATGCCTCCACCCCGTCCAACGGTT...GAAAGGAGTGAACTTAGCAGCGTGTTCCTCCTCCTCGGGACCAGAGATAAATAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000067375.5 |
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| 3UTR-3UTR CCA 90 bp | TTGCGGGACAAGAGTGCAACAAGTTCAGGAAGCAGAAATTGCGCTGTGGACGTTGAGCTGGATGACAAGTaGCTGAGACATGAGGATGGA | + |
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Preference number: 2 (lower is better) Translates to: LRDKSATSSGSRNCAVDVELDDK*LRHEDG Trigger: TCCATCCTCATGTCTCAGCCACTTGTCATCCAGCTC...AACGTCCACAGCGCAATTTCTGCTTCCTGAACTTGTTGCACTCTTGTCCCGCAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000067375.5 |
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| 3UTR-3UTR GCA 90 bp | CAAAACTCACACCATTGCAGTCCTGTAATTATTTATCTCTGGTCCCGAGGAGGATCAGGAAGCAGAAATTaGGCTGTGGACGTTCTCTGC | + |
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Preference number: 2 (lower is better) Translates to: QNSHHCSPVIIYLWSRGGSGSRN*AVDVLC Trigger: GCAGAGAACGTCCACAGCGCAATTTCTGCTTCCTGA...TCCTCCTCGGGACCAGAGATAAATAATTACAGGACTGCAATGGTGTGAGTTTTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000067375.5 |
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| 3UTR-3UTR CCA 90 bp | GCAAACTGCAAGTCAAGGCACCGGCACCAGAAAGTAAATAAACAGAAGAAGAGACTGCAAGTTGCTAAGTaGACTGCGCTTGCCTTTCTT | + |
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Preference number: 2 (lower is better) Translates to: ANCKSRHRHQKVNKQKKRLQVAK*TALAFL Trigger: AAGAAAGGCAAGCGCAGTCCACTTAGCAACTTGCAG...TCTCTTCTTCTGTTTATTTACTTTCTGGTGCCGGTGCCTTGACTTGCAGTTTGC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000067375.5 |
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| 3UTR-3UTR CCA 90 bp | ATAGACTGCAGACCTAGTAAGAGAATAGAAGACCTTCCAGGGGCAAAGGAGAAGAATCTCTTTAGTCTTTaGGACATGGAAGGGTTGCGG | + |
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Preference number: 2 (lower is better) Translates to: IDCRPSKRIEDLPGAKEKNLFSL*DMEGLR Trigger: CCGCAACCCTTCCATGTCCCAAAGACTAAAGAGATT...CTTCTCCTTTGCCCCTGGAAGGTCTTCTATTCTCTTACTAGGTCTGCAGTCTAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000067375.5 |
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| 3UTR-3UTR GCA 90 bp | AACTTCCGCAAGCCTCAGTTTCCTGATCTGTGGTTCACACCCCCTTTAATTACATGTTTTAAAGATTGGTaGCTTTGCCTCCAAAATGAT | + |
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Preference number: 2 (lower is better) Translates to: NFRKPQFPDLWFTPPLITCFKDW*LCLQND Trigger: ATCATTTTGGAGGCAAAGGCACCAATCTTTAAAACA...TGTAATTAAAGGGGGTGTGAACCACAGATCAGGAAACTGAGGCTTGCGGAAGTT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000067375.5 |
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| 3UTR CCA 72 bp | TCTCCGCGAGTCTTCCCACCCGGGAAGAACCCGGTCTaGCCCCGCGGCCTCCTCGCCCGGGTCTCCCTTCCC | + |
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Preference number: 3 (lower is better) Translates to: SPRVFPPGKNPV*PRGLLARVSLP Trigger: GGGAAGGGAGACCCGGGCGAGGAGGCCGCGGGGCCAGACCGGGTTCTTCCCGGGTGGGAAGACTCGCGGAGA 74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000067375.5 |
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| 3UTR CCA 72 bp | AGGATGGAGGGGTTCTGCATTGGCGGCGCGCGGAGCTaGAGGCGCTCGGTTGAATTGTACCACCGTGAGCCC | + |
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Preference number: 3 (lower is better) Translates to: RMEGFCIGGARS*RRSVELYHREP Trigger: GGGCTCACGGTGGTACAATTCAACCGAGCGCCTCCAGCTCCGCGCGCCGCCAATGCAGAACCCCTCCATCCT 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000067375.5 |
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| 3UTR CCA 72 bp | ATCCCCGACAGGGAACCGTTGGACGGGGTGGAGGCATaGGAAGGAGTCGCTGGCGGCTGCAAGTTGCTAAGT | + |
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Preference number: 3 (lower is better) Translates to: IPDREPLDGVEA*EGVAGGCKLLS Trigger: ACTTAGCAACTTGCAGCCGCCAGCGACTCCTTCCCATGCCTCCACCCCGTCCAACGGTTCCCTGTCGGGGAT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000067375.5 |
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| 3UTR CCA 72 bp | ACGTTCTCTGCCCACAGTTCTGTAGGGAGGGGATTGTaGAGGCCTCCAGCCCTTCAGCGCTACAAGCGCCCC | + |
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Preference number: 3 (lower is better) Translates to: TFSAHSSVGRGL*RPPALQRYKRP Trigger: GGGGCGCTTGTAGCGCTGAAGGGCTGGAGGCCTCCACAATCCCCTCCCTACAGAACTGTGGGCAGAGAACGT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000067375.5 |
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| 3UTR CCA 72 bp | CCTTTCTTTCTTCCAGCCCAGGTCGCAGGAGCAGTCTaGAGTCTCCGCGAGTCTTCCCACCCGGGAAGAACC | + |
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Preference number: 3 (lower is better) Translates to: PFFLPAQVAGAV*SLRESSHPGRT Trigger: GGTTCTTCCCGGGTGGGAAGACTCGCGGAGACTCCAGACTGCTCCTGCGACCTGGGCTGGAAGAAAGAAAGG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000067375.5 |
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| 3UTR CCA 72 bp | GGCCGCGGGGACAGAGTGACAGAGCTGGATGACAAGTaGCTGAGACATGAGGATGGAGGGGTTCTGCATTGG | + |
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Preference number: 3 (lower is better) Translates to: GRGDRVTELDDK*LRHEDGGVLHW Trigger: CCAATGCAGAACCCCTCCATCCTCATGTCTCAGCCACTTGTCATCCAGCTCTGTCACTCTGTCCCCGCGGCC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000067375.5 |
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| 3UTR GCA 72 bp | AGTTCAGGAAGCAGAAATTGCGCTGTGGACGTTCTCTaGCCACAGTTCTGTAGGGAGGGGATTGTGGAGGCC | + |
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Preference number: 3 (lower is better) Translates to: SSGSRNCAVDVL*PQFCREGIVEA Trigger: GGCCTCCACAATCCCCTCCCTACAGAACTGTGGGCAGAGAACGTCCACAGCGCAATTTCTGCTTCCTGAACT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000067375.5 |
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| 3UTR GCA 72 bp | CGGGACAAGAGTGCAACAAGTTCAGGAAGCAGAAATTaGGCTGTGGACGTTCTCTGCCCACAGTTCTGTAGG | + |
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Preference number: 3 (lower is better) Translates to: RDKSATSSGSRN*AVDVLCPQFCR Trigger: CCTACAGAACTGTGGGCAGAGAACGTCCACAGCGCAATTTCTGCTTCCTGAACTTGTTGCACTCTTGTCCCG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000067375.5 |
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| 3UTR CCA 72 bp | AGAGTGCAACAAGTTCAGGAAGCAGAAATTGCGCTGTaGACGTTCTCTGCCCACAGTTCTGTAGGGAGGGGA | + |
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Preference number: 3 (lower is better) Translates to: RVQQVQEAEIAL*TFSAHSSVGRG Trigger: TCCCCTCCCTACAGAACTGTGGGCAGAGAACGTCCACAGCGCAATTTCTGCTTCCTGAACTTGTTGCACTCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000067375.5 |
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| 3UTR CCA 72 bp | GGCTGCTCTGTTGGAGACGCGTCTCGCTTAGTTCATTaGCATAGTTACACATTCCAAATACCAAAGGCCCCG | + |
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Preference number: 3 (lower is better) Translates to: GCSVGDASRLVH*HSYTFQIPKAP Trigger: CGGGGCCTTTGGTATTTGGAATGTGTAACTATGCCAATGAACTAAGCGAGACGCGTCTCCAACAGAGCAGCC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000067375.5 |
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| 3UTR-3UTR CAA 90 bp | TGGGCAGTCCAAAGGCTACACTATGTACACTTCTGTTTTAAAGATTGGTGCCTTTCTGTAGGGAGGGGATaGTGGAGGCCTCCAGCCCTT | + |
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Preference number: 3 (lower is better) Translates to: WAVQRLHYVHFCFKDWCLSVGRG*WRPPAL Trigger: AAGGGCTGGAGGCCTCCACAATCCCCTCCCTACAGA...AAGGCACCAATCTTTAAAACAGAAGTGTACATAGTGTAGCCTTTGGACTGCCCA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000067375.5 |
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| 3UTR TCA 72 bp | GGCTGCATTCCTCAACTTCCGCAAGCCTCAGTTTCCTaGTCTGTGGTTCACACCCCCTTTAATTACAGAGCA | + |
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Preference number: 3 (lower is better) Translates to: GCIPQLPQASVS*SVVHTPFNYRA Trigger: TGCTCTGTAATTAAAGGGGGTGTGAACCACAGATCAGGAAACTGAGGCTTGCGGAAGTTGAGGAATGCAGCC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000067375.5 |
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| 3UTR CCA 72 bp | GGACAATCGCTTAAAATCTCTTTAGTCTTTGGGACATaGAAGGGTTGCGGGACAAGAGTGCAACAAGTTCAG | + |
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Preference number: 3 (lower is better) Translates to: GQSLKISLVFGT*KGCGTRVQQVQ Trigger: CTGAACTTGTTGCACTCTTGTCCCGCAACCCTTCCATGTCCCAAAGACTAAAGAGATTTTAAGCGATTGTCC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000067375.5 |
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| 3UTR CCA 72 bp | TTCCTCAACTTCCGCAAGCCTCAGTTTCCTGATCTGTaGTTCACACCCCCTTTAATTACAGAGCAAACATTC | + |
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Preference number: 3 (lower is better) Translates to: FLNFRKPQFPDL*FTPPLITEQTF Trigger: GAATGTTTGCTCTGTAATTAAAGGGGGTGTGAACCACAGATCAGGAAACTGAGGCTTGCGGAAGTTGAGGAA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000067375.5 |
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| 3UTR TCA 72 bp | AACCCAAACCTACAATTTTCTATAAACTACTTCCTTTaGAAAGGTTCAGTATGGCTCGGGGTATGGTTTGGA | + |
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Preference number: 3 (lower is better) Translates to: NPNLQFSINYFL*KGSVWLGVWFG Trigger: TCCAAACCATACCCCGAGCCATACTGAACCTTTTCAAAGGAAGTAGTTTATAGAAAATTGTAGGTTTGGGTT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000067375.5 |
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| CDS-3UTR CCA 90 bp | GAGCGACCGCCTAGGTGGGGAGGCCGCGGGGACAGAGTGACAGAGCTGGATGACCCGGCATCCCTGAGGTaGTCAGGAAATAAGGATGGT | + |
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Preference number: 4 (lower is better) Translates to: ERPPRWGGRGDRVTELDDPASLR*SGNKDG Trigger: ACCATCCTTATTTCCTGACCACCTCAGGGATGCCGG...GTCATCCAGCTCTGTCACTCTGTCCCCGCGGCCTCCCCACCTAGGCGGTCGCTC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000067375.5 |
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| 3UTR CAA 72 bp | CCAGCGATCACATTAGTGATCCCCGACAGGGAACCGTaGGACGGGGTGGAGGCATGGGAAGGAGTCGCTGGC | + |
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Preference number: 4 (lower is better) Translates to: PAITLVIPDREP*DGVEAWEGVAG Trigger: GCCAGCGACTCCTTCCCATGCCTCCACCCCGTCCAACGGTTCCCTGTCGGGGATCACTAATGTGATCGCTGG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000067375.5 |
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| 3UTR CAA 72 bp | TCTGCATTGGCGGCGCGCGGAGCTGGAGGCGCTCGGTaGAATTGTACCACCGTGAGCCCAGCTGCTAGTTTG | + |
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Preference number: 4 (lower is better) Translates to: SALAARGAGGAR*NCTTVSPAASL Trigger: CAAACTAGCAGCTGGGCTCACGGTGGTACAATTCAACCGAGCGCCTCCAGCTCCGCGCGCCGCCAATGCAGA 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000067375.5 |
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| 3UTR CAA 72 bp | TGGACGTTCTCTGCCCACAGTTCTGTAGGGAGGGGATaGTGGAGGCCTCCAGCCCTTCAGCGCTACAAGCGC | + |
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Preference number: 4 (lower is better) Translates to: WTFSAHSSVGRG*WRPPALQRYKR Trigger: GCGCTTGTAGCGCTGAAGGGCTGGAGGCCTCCACAATCCCCTCCCTACAGAACTGTGGGCAGAGAACGTCCA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000067375.5 |
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| CDS-3UTR GCA 90 bp | TTGCGGGACAAGAGTGCAACAAGTTCAGGAAGCAGAAATTGCGCTGTGGACGTTTCCGCGTGCTGCGGGTaGGGGAACAGCGCCGGGACC | + |
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Preference number: 4 (lower is better) Translates to: LRDKSATSSGSRNCAVDVSACCG*GNSAGT Trigger: GGTCCCGGCGCTGTTCCCGCACCCGCAGCACGCGGA...AACGTCCACAGCGCAATTTCTGCTTCCTGAACTTGTTGCACTCTTGTCCCGCAA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000067375.5 |
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| 3UTR CAA 72 bp | GTCGCTGGCGGCTGCAAGTTGCTAAGTGGACTGCGCTaGCCTTTCTTTCTTCCAGCCCAGGTCGCAGGAGCA | + |
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Preference number: 4 (lower is better) Translates to: VAGGCKLLSGLR*PFFLPAQVAGA Trigger: TGCTCCTGCGACCTGGGCTGGAAGAAAGAAAGGCAAGCGCAGTCCACTTAGCAACTTGCAGCCGCCAGCGAC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000067375.5 |
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| CDS-3UTR GCA 90 bp | GACAAGAGTGCAACAAGTTCAGGAAGCAGAAATTGCGCTGTGGACGTTCTCTGCCCGGGCAACTCCGCGTaGTGCGGGTGCGGGAACAGC | + |
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Preference number: 4 (lower is better) Translates to: DKSATSSGSRNCAVDVLCPGNSA*CGCGNS Trigger: GCTGTTCCCGCACCCGCAGCACGCGGAGTTGCCCGG...GCAGAGAACGTCCACAGCGCAATTTCTGCTTCCTGAACTTGTTGCACTCTTGTC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000067375.5 |
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| CDS-3UTR GCA 90 bp | TTGCGGGACAAGAGTGCAACAAGTTCAGGAAGCAGAAATTGCGCTGTGGACGTTTTGCGGCGGCGGCAGTaGTTCCCGGGCAACTCCGCG | + |
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Preference number: 4 (lower is better) Translates to: LRDKSATSSGSRNCAVDVLRRRQ*FPGNSA Trigger: CGCGGAGTTGCCCGGGAAGCACTGCCGCCGCCGCAA...AACGTCCACAGCGCAATTTCTGCTTCCTGAACTTGTTGCACTCTTGTCCCGCAA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000067375.5 |
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| CDS-3UTR TCA 90 bp | CCCCACCCCCAGGGCTGCTCTGTTGGAGACGCGTCTCGCTTAGTTCATTGGCATGCAGAATGTCCTCGATaGAAAACGACGTGGGCCTCT | + |
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Preference number: 4 (lower is better) Translates to: PHPQGCSVGDASRLVHWHAECPR*KTTWAS Trigger: AGAGGCCCACGTCGTTTTTCATCGAGGACATTCTGC...ATGCCAATGAACTAAGCGAGACGCGTCTCCAACAGAGCAGCCCTGGGGGTGGGG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000067375.5 |
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| CDS-3UTR GCA 90 bp | ATAGACTGCAGACCTAGTAAGAGAATAGAAGACCTTCCAGGGGCAAAGGAGAAGGGCAACTCCGCGTGCTaGGGGTGCGGGAACAGCGCC | + |
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Preference number: 4 (lower is better) Translates to: IDCRPSKRIEDLPGAKEKGNSAC*GCGNSA Trigger: GGCGCTGTTCCCGCACCCGCAGCACGCGGAGTTGCC...CTTCTCCTTTGCCCCTGGAAGGTCTTCTATTCTCTTACTAGGTCTGCAGTCTAT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000067375.5 |
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| CDS-3UTR GCA 90 bp | GACAAGAGTGCAACAAGTTCAGGAAGCAGAAATTGCGCTGTGGACGTTCTCTGCGCTCTCCGGCCCGTCTaGCGCTTTCGGTTCGTCTTG | + |
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Preference number: 4 (lower is better) Translates to: DKSATSSGSRNCAVDVLCALRPV*RFRFVL Trigger: CAAGACGAACCGAAAGCGGCAGACGGGCCGGAGAGC...GCAGAGAACGTCCACAGCGCAATTTCTGCTTCCTGAACTTGTTGCACTCTTGTC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000067375.5 |
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| CDS-3UTR CCA 90 bp | CCCCACCCCCAGGGCTGCTCTGTTGGAGACGCGTCTCGCTTAGTTCATTGGCATCCTCTGAGAAGATGCTaGATGAAGAGGGGAAGTGAA | + |
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Preference number: 4 (lower is better) Translates to: PHPQGCSVGDASRLVHWHPLRRC*MKRGSE Trigger: TTCACTTCCCCTCTTCATCCAGCATCTTCTCAGAGG...ATGCCAATGAACTAAGCGAGACGCGTCTCCAACAGAGCAGCCCTGGGGGTGGGG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000067375.5 |
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| CDS-3UTR CCA 90 bp | GAGGAGGAGGAACACGCTGCTAAGTTCACTCCTTTCCAGTCTTCAGGGCTCACTAGAGAGCTGGCAAAGTaGTCAGGGGCCACTTCCCTC | + |
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Preference number: 4 (lower is better) Translates to: EEEEHAAKFTPFQSSGLTRELAK*SGATSL Trigger: GAGGGAAGTGGCCCCTGACCACTTTGCCAGCTCTCT...AGTGAGCCCTGAAGACTGGAAAGGAGTGAACTTAGCAGCGTGTTCCTCCTCCTC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000067375.5 |
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| CDS-3UTR TCA 90 bp | CATGGAAGGGTTGCGGGACAAGAGTGCAACAAGTTCAGGAAGCAGAAATTGCGCTTTCACCTGAGTCTCTaGGAGGCTGAGGGCAGTGGC | + |
|
Preference number: 4 (lower is better) Translates to: HGRVAGQECNKFRKQKLRFHLSL*EAEGSG Trigger: GCCACTGCCCTCAGCCTCTCAGAGACTCAGGTGAAA...GCGCAATTTCTGCTTCCTGAACTTGTTGCACTCTTGTCCCGCAACCCTTCCATG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000067375.5 |
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| CDS-3UTR GCA 90 bp | AACTTCCGCAAGCCTCAGTTTCCTGATCTGTGGTTCACACCCCCTTTAATTACAACACCGTGCGAGCTTTaGGGCGGCGGCAGTGCTTCC | + |
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Preference number: 4 (lower is better) Translates to: NFRKPQFPDLWFTPPLITTPCEL*GGGSAS Trigger: GGAAGCACTGCCGCCGCCGCAAAGCTCGCACGGTGT...TGTAATTAAAGGGGGTGTGAACCACAGATCAGGAAACTGAGGCTTGCGGAAGTT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000067375.5 |
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| CDS-3UTR GCA 90 bp | TTATTTATCTCTGGTCCCGAGGAGGAGGAACACGCTGCTAAGTTCACTCCTTTCAGTCAGAAAACACCGTaGGAGCTTTGCGGCGGCGGC | + |
|
Preference number: 4 (lower is better) Translates to: LFISGPEEEEHAAKFTPFSQKTP*ELCGGG Trigger: GCCGCCGCCGCAAAGCTCGCACGGTGTTTTCTGACT...GAAAGGAGTGAACTTAGCAGCGTGTTCCTCCTCCTCGGGACCAGAGATAAATAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000067375.5 |
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| CDS-3UTR TCA 90 bp | CAAAACTCACACCATTGCAGTCCTGTAATTATTTATCTCTGGTCCCGAGGAGGAGAGTCTCTGAGAGGCTaGGGGCAGTGGCCAGCTCCA | + |
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Preference number: 4 (lower is better) Translates to: QNSHHCSPVIIYLWSRGGESLRG*GQWPAP Trigger: TGGAGCTGGCCACTGCCCTCAGCCTCTCAGAGACTC...TCCTCCTCGGGACCAGAGATAAATAATTACAGGACTGCAATGGTGTGAGTTTTG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000067375.5 |
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| CDS-3UTR CCA 90 bp | GCAAACTGCAAGTCAAGGCACCGGCACCAGAAAGTAAATAAACAGAAGAAGAGACAGCTCCACACGCTCTaGCGTCGACAGGTAGCGCTG | + |
|
Preference number: 4 (lower is better) Translates to: ANCKSRHRHQKVNKQKKRQLHTL*RRQVAL Trigger: CAGCGCTACCTGTCGACGCCAGAGCGTGTGGAGCTG...TCTCTTCTTCTGTTTATTTACTTTCTGGTGCCGGTGCCTTGACTTGCAGTTTGC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000067375.5 |
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| CDS-3UTR GCA 90 bp | CATGGAAGGGTTGCGGGACAAGAGTGCAACAAGTTCAGGAAGCAGAAATTGCGCCTCAGCTGCTTTTTATaGTTCATCCGCCGGTTCTGG | + |
|
Preference number: 4 (lower is better) Translates to: HGRVAGQECNKFRKQKLRLSCFL*FIRRFW Trigger: CCAGAACCGGCGGATGAAGCATAAAAAGCAGCTGAG...GCGCAATTTCTGCTTCCTGAACTTGTTGCACTCTTGTCCCGCAACCCTTCCATG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000067375.5 |
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| CDS-3UTR GCA 90 bp | CTTAAAATCTCTTTAGTCTTTGGGACATGGAAGGGTTGCGGGACAAGAGTGCAATCCAGGCCGGAGAGCTaGGAGTCAGAAAACACCGTG | + |
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Preference number: 4 (lower is better) Translates to: LKISLVFGTWKGCGTRVQSRPES*ESENTV Trigger: CACGGTGTTTTCTGACTCGCAGCTCTCCGGCCTGGA...TTGCACTCTTGTCCCGCAACCCTTCCATGTCCCAAAGACTAAAGAGATTTTAAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000067375.5 |
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| CDS-3UTR GCA 90 bp | GAGGAGGAGGAACACGCTGCTAAGTTCACTCCTTTCCAGTCTTCAGGGCTCACTTGGCTTTTCCTCAGCTaGTTTTTATGCTTCATCCGC | + |
|
Preference number: 4 (lower is better) Translates to: EEEEHAAKFTPFQSSGLTWLFLS*FLCFIR Trigger: GCGGATGAAGCATAAAAAGCAGCTGAGGAAAAGCCA...AGTGAGCCCTGAAGACTGGAAAGGAGTGAACTTAGCAGCGTGTTCCTCCTCCTC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000067375.5 |
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| 3UTR CAA 72 bp | TCCTTTGAAAAGGTTCAGTATGGCTCGGGGTATGGTTaGGAAGTAGATGGCTTGCCTGGAGAGAGTCTGGAT | + |
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Preference number: 4 (lower is better) Translates to: SFEKVQYGSGYG*EVDGLPGESLD Trigger: ATCCAGACTCTCTCCAGGCAAGCCATCTACTTCCAAACCATACCCCGAGCCATACTGAACCTTTTCAAAGGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000067375.5 |
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| CDS-3UTR GCA 90 bp | CAAAACTCACACCATTGCAGTCCTGTAATTATTTATCTCTGGTCCCGAGGAGGAGGGCCTCTGAGAAGATaGTGGATGAAGAGGGGAAGT | + |
|
Preference number: 4 (lower is better) Translates to: QNSHHCSPVIIYLWSRGGGPLRR*WMKRGS Trigger: ACTTCCCCTCTTCATCCAGCATCTTCTCAGAGGCCC...TCCTCCTCGGGACCAGAGATAAATAATTACAGGACTGCAATGGTGTGAGTTTTG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000067375.5 |
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| CDS-3UTR CCA 90 bp | CTTAAAATCTCTTTAGTCTTTGGGACATGGAAGGGTTGCGGGACAAGAGTGCAACTTCCCTCAACGGCTTaGGCTTGTGTAGCAGAATGT | + |
|
Preference number: 4 (lower is better) Translates to: LKISLVFGTWKGCGTRVQLPSTA*ACVAEC Trigger: ACATTCTGCTACACAAGCCCAAGCCGTTGAGGGAAG...TTGCACTCTTGTCCCGCAACCCTTCCATGTCCCAAAGACTAAAGAGATTTTAAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000067375.5 |
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| CDS-3UTR CCA 90 bp | TCACACCATTGCAGTCCTGTAATTATTTATCTCTGGTCCCGAGGAGGAGGAACAGCTTTCGGTTCGTCTTaGCTTTTCCTCAGCTGCTTT | + |
|
Preference number: 4 (lower is better) Translates to: SHHCSPVIIYLWSRGGGTAFGSS*LFLSCF Trigger: AAAGCAGCTGAGGAAAAGCCAAGACGAACCGAAAGC...TGTTCCTCCTCCTCGGGACCAGAGATAAATAATTACAGGACTGCAATGGTGTGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000067375.5 |
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| 3UTR CAA 72 bp | ACAGAAGAGGAAAAATCTGAACCTGGATTTGTAGCATaGGCCACAACTACACAAACTAAAGAAATGATGATA | + |
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Preference number: 4 (lower is better) Translates to: TEEEKSEPGFVA*ATTTQTKEMMI Trigger: TATCATCATTTCTTTAGTTTGTGTAGTTGTGGCCAATGCTACAAATCCAGGTTCAGATTTTTCCTCTTCTGT 36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000067375.5 |
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| CDS GCA 90 bp | GGCTCAGCCGAGCGTCGGCGGGCGCGCCCTCGGGAGCACGAGGGCTaGCTTCGGGGCTCTCCGGCCCGTCTGCCGCTTTCGGTTCGTCTT | + |
|
Preference number: 5 (lower is better) Translates to: GSAERRRARPREHEG*LRGSPARLPLSVRL Trigger: AAGACGAACCGAAAGCGGCAGACGGGCCGGAGAGCCCCGAAGGCAGCCCTCGTGCTCCCGAGGGCGCGCCCGCCGACGCTCGGCTGAGCC 74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000067375.5 |
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| CDS GCA 90 bp | GTGCGAGCTTTGCGGCGGCGGCAGTGCTTCCCGGGCAACTCCGCGTaGTGCGGGTGCGGGAACAGCGCCGGGACCGGCATCCCTGAGGTG | + |
|
Preference number: 5 (lower is better) Translates to: VRALRRRQCFPGNSA*CGCGNSAGTGIPEV Trigger: CACCTCAGGGATGCCGGTCCCGGCGCTGTTCCCGCACCCGCAGCACGCGGAGTTGCCCGGGAAGCACTGCCGCCGCCGCAAAGCTCGCAC 73% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000067375.5 |
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| CDS GCA 90 bp | AGCTGCGAGTCAGAAAACACCGTGCGAGCTTTGCGGCGGCGGCAGTaGTTCCCGGGCAACTCCGCGTGCTGCGGGTGCGGGAACAGCGCC | + |
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Preference number: 5 (lower is better) Translates to: SCESENTVRALRRRQ*FPGNSACCGCGNSA Trigger: GGCGCTGTTCCCGCACCCGCAGCACGCGGAGTTGCCCGGGAAGCACTGCCGCCGCCGCAAAGCTCGCACGGTGTTTTCTGACTCGCAGCT 69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000067375.5 |
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| CDS GCA 90 bp | TCTCCAGGCCGGAGAGCTGCGAGTCAGAAAACACCGTGCGAGCTTTaGGGCGGCGGCAGTGCTTCCCGGGCAACTCCGCGTGCTGCGGGT | + |
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Preference number: 5 (lower is better) Translates to: SPGRRAASQKTPCEL*GGGSASRATPRAAG Trigger: ACCCGCAGCACGCGGAGTTGCCCGGGAAGCACTGCCGCCGCCGCAAAGCTCGCACGGTGTTTTCTGACTCGCAGCTCTCCGGCCTGGAGA 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000067375.5 |
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| CDS GCA 90 bp | CGAACCTTTTCTCCAGGCCGGAGAGCTGCGAGTCAGAAAACACCGTaGGAGCTTTGCGGCGGCGGCAGTGCTTCCCGGGCAACTCCGCGT | + |
|
Preference number: 5 (lower is better) Translates to: RTFSPGRRAASQKTP*ELCGGGSASRATPR Trigger: ACGCGGAGTTGCCCGGGAAGCACTGCCGCCGCCGCAAAGCTCGCACGGTGTTTTCTGACTCGCAGCTCTCCGGCCTGGAGAAAAGGTTCG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000067375.5 |
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| CDS-3UTR CAA 90 bp | TCTGTAGGGAGGGGATTGTGGAGGCCTCCAGCCCTTCAGCGCTACAAGCGCCCCCTCAACGGCTTGGGCTaGTGTAGCAGAATGTCCTCG | + |
|
Preference number: 5 (lower is better) Translates to: SVGRGLWRPPALQRYKRPLNGLG*CSRMSS Trigger: CGAGGACATTCTGCTACACAAGCCCAAGCCGTTGAG...GGGGCGCTTGTAGCGCTGAAGGGCTGGAGGCCTCCACAATCCCCTCCCTACAGA 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000067375.5 |
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| CDS-3UTR CAA 90 bp | TCCGATGGGCGCTGCCTGGATCCCGGCATAGCCCCAGACACTTGGTTCCTTTATCGCTTTCGGTTCGTCTaGGCTTTTCCTCAGCTGCTT | + |
|
Preference number: 5 (lower is better) Translates to: SDGRCLDPGIAPDTWFLYRFRFV*AFPQLL Trigger: AAGCAGCTGAGGAAAAGCCAAGACGAACCGAAAGCG...ATAAAGGAACCAAGTGTCTGGGGCTATGCCGGGATCCAGGCAGCGCCCATCGGA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000067375.5 |
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| CDS-3UTR CAA 90 bp | CAAAACTCACACCATTGCAGTCCTGTAATTATTTATCTCTGGTCCCGAGGAGGAAACACCGTGCGAGCTTaGCGGCGGCGGCAGTGCTTC | + |
|
Preference number: 5 (lower is better) Translates to: QNSHHCSPVIIYLWSRGGNTVRA*RRRQCF Trigger: GAAGCACTGCCGCCGCCGCAAAGCTCGCACGGTGTT...TCCTCCTCGGGACCAGAGATAAATAATTACAGGACTGCAATGGTGTGAGTTTTG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000067375.5 |
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| CDS GCA 72 bp | GAGCGTCGGCGGGCGCGCCCTCGGGAGCACGAGGGCTaGCTTCGGGGCTCTCCGGCCCGTCTGCCGCTTTCG | + |
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Preference number: 6 (lower is better) Translates to: ERRRARPREHEG*LRGSPARLPLS Trigger: CGAAAGCGGCAGACGGGCCGGAGAGCCCCGAAGGCAGCCCTCGTGCTCCCGAGGGCGCGCCCGCCGACGCTC 78% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000067375.5 |
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| CDS GCA 72 bp | TTGCGGCGGCGGCAGTGCTTCCCGGGCAACTCCGCGTaGTGCGGGTGCGGGAACAGCGCCGGGACCGGCATC | + |
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Preference number: 6 (lower is better) Translates to: LRRRQCFPGNSA*CGCGNSAGTGI Trigger: GATGCCGGTCCCGGCGCTGTTCCCGCACCCGCAGCACGCGGAGTTGCCCGGGAAGCACTGCCGCCGCCGCAA 75% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000067375.5 |
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| CDS GCA 72 bp | CGGCAGTGCTTCCCGGGCAACTCCGCGTGCTGCGGGTaGGGGAACAGCGCCGGGACCGGCATCCCTGAGGTG | + |
|
Preference number: 6 (lower is better) Translates to: RQCFPGNSACCG*GNSAGTGIPEV Trigger: CACCTCAGGGATGCCGGTCCCGGCGCTGTTCCCGCACCCGCAGCACGCGGAGTTGCCCGGGAAGCACTGCCG 74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000067375.5 |
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| CDS GCA 72 bp | TCAGAAAACACCGTGCGAGCTTTGCGGCGGCGGCAGTaGTTCCCGGGCAACTCCGCGTGCTGCGGGTGCGGG | + |
|
Preference number: 6 (lower is better) Translates to: SENTVRALRRRQ*FPGNSACCGCG Trigger: CCCGCACCCGCAGCACGCGGAGTTGCCCGGGAAGCACTGCCGCCGCCGCAAAGCTCGCACGGTGTTTTCTGA 69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000067375.5 |
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| CDS GCA 72 bp | CGGAGAGCTGCGAGTCAGAAAACACCGTGCGAGCTTTaGGGCGGCGGCAGTGCTTCCCGGGCAACTCCGCGT | + |
|
Preference number: 6 (lower is better) Translates to: RRAASQKTPCEL*GGGSASRATPR Trigger: ACGCGGAGTTGCCCGGGAAGCACTGCCGCCGCCGCAAAGCTCGCACGGTGTTTTCTGACTCGCAGCTCTCCG 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000067375.5 |
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| CDS GCA 72 bp | TCTCCAGGCCGGAGAGCTGCGAGTCAGAAAACACCGTaGGAGCTTTGCGGCGGCGGCAGTGCTTCCCGGGCA | + |
|
Preference number: 6 (lower is better) Translates to: SPGRRAASQKTP*ELCGGGSASRA Trigger: TGCCCGGGAAGCACTGCCGCCGCCGCAAAGCTCGCACGGTGTTTTCTGACTCGCAGCTCTCCGGCCTGGAGA 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000067375.5 |
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| CDS GCA 72 bp | AGCACGAGGGCTGCCTTCGGGGCTCTCCGGCCCGTCTaGCGCTTTCGGTTCGTCTTGGCTTTTCCTCAGCTG | + |
|
Preference number: 6 (lower is better) Translates to: STRAAFGALRPV*RFRFVLAFPQL Trigger: CAGCTGAGGAAAAGCCAAGACGAACCGAAAGCGGCAGACGGGCCGGAGAGCCCCGAAGGCAGCCCTCGTGCT 65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000067375.5 |
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| CDS GCA 72 bp | CGCTGGATTTCGAACCTTTTCTCCAGGCCGGAGAGCTaGGAGTCAGAAAACACCGTGCGAGCTTTGCGGCGG | + |
|
Preference number: 6 (lower is better) Translates to: RWISNLFSRPES*ESENTVRALRR Trigger: CCGCCGCAAAGCTCGCACGGTGTTTTCTGACTCGCAGCTCTCCGGCCTGGAGAAAAGGTTCGAAATCCAGCG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000067375.5 |
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| CDS CAA 90 bp | GCCAGAGAGCTGGCAAAGTGGTCAGGGGCCACTTCCCTCAACGGCTaGGGCTTGTGTAGCAGAATGTCCTCGATGAAAAACGACGTGGGC | + |
|
Preference number: 6 (lower is better) Translates to: ARELAKWSGATSLNG*GLCSRMSSMKNDVG Trigger: GCCCACGTCGTTTTTCATCGAGGACATTCTGCTACACAAGCCCAAGCCGTTGAGGGAAGTGGCCCCTGACCACTTTGCCAGCTCTCTGGC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000067375.5 |
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| CDS CAA 72 bp | CTGGCAAAGTGGTCAGGGGCCACTTCCCTCAACGGCTaGGGCTTGTGTAGCAGAATGTCCTCGATGAAAAAC | + |
|
Preference number: 6 (lower is better) Translates to: LAKWSGATSLNG*GLCSRMSSMKN Trigger: GTTTTTCATCGAGGACATTCTGCTACACAAGCCCAAGCCGTTGAGGGAAGTGGCCCCTGACCACTTTGCCAG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000067375.5 |
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| CDS TCA 72 bp | TCAACGGCTTGGGCTTGTGTAGCAGAATGTCCTCGATaGAAAACGACGTGGGCCTCTGAGAAGATGCTGGAT | + |
|
Preference number: 6 (lower is better) Translates to: STAWACVAECPR*KTTWASEKMLD Trigger: ATCCAGCATCTTCTCAGAGGCCCACGTCGTTTTTCATCGAGGACATTCTGCTACACAAGCCCAAGCCGTTGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000067375.5 |
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