Pregenerated sensors for BST2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000046718Ensembl transcript IDs: ENSMUST00000051672.9
Found 31 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR TCA 90 bp | CTCCCTCCCCACTCCCCAGTCCTAAAGTTCTGCGGAGGAAGACCCAATCTGGAGTCTCCAGAGTCACTATaGCCCATAGTGACTTCAAAC | + |
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Preference number: 2 (lower is better) Translates to: LPPHSPVLKFCGGRPNLESPESL*PIVTSN Trigger: GTTTGAAGTCACTATGGGTCATAGTGACTCTGGAGA...CTCCAGATTGGGTCTTCCTCCGCAGAACTTTAGGACTGGGGAGTGGGGAGGGAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000051672.9 |
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| 3UTR TCA 72 bp | ATCCTCAGGGCTGCCAGGACCTCTCCAGAGTCACTATaGCCCATAGTGACTTCAAACAACTGTGACCTGCCA | + |
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Preference number: 3 (lower is better) Translates to: ILRAARTSPESL*PIVTSNNCDLP Trigger: TGGCAGGTCACAGTTGTTTGAAGTCACTATGGGTCATAGTGACTCTGGAGAGGTCCTGGCAGCCCTGAGGAT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000051672.9 |
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| CDS-3UTR TCA 90 bp | ACTCCCTCCCCACTCCCCAGTCCTAAAGTTCTGCGGAGGAAGACCCAATCTGGATGTCCTGGGTGCGGGTaGGCTGGCGCTGCAACAGGT | + |
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Preference number: 4 (lower is better) Translates to: TPSPLPSPKVLRRKTQSGCPGCG*AGAATG Trigger: ACCTGTTGCAGCGCCAGCTCACCCGCACCCAGGACA...TCCAGATTGGGTCTTCCTCCGCAGAACTTTAGGACTGGGGAGTGGGGAGGGAGT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000051672.9 |
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| CDS-3UTR TCA 90 bp | CTGGAGCCCCCTAGTGGTTTCCACATCCTCAGGGCTGCCAGGACCTCTCCAGAGCATTCTCAAGCTCCTTaGTGCGGGCCTGCTGCTCCA | + |
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Preference number: 4 (lower is better) Translates to: LEPPSGFHILRAARTSPEHSQAP*CGPAAP Trigger: TGGAGCAGCAGGCCCGCATCAAGGAGCTTGAGAATG...CTCTGGAGAGGTCCTGGCAGCCCTGAGGATGTGGAAACCACTAGGGGGCTCCAG 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000051672.9 |
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| CDS-3UTR GCA 90 bp | GAACTCCCTCCCCACTCCCCAGTCCTAAAGTTCTGCGGAGGAAGACCCAATCTGGCCTGTGTCTCGGCCTaGAGCAGACTGTCCTGGGTG | + |
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Preference number: 4 (lower is better) Translates to: ELPPHSPVLKFCGGRPNLACVSA*SRLSWV Trigger: CACCCAGGACAGTCTGCTGCAGGCCGAGACACAGGC...CAGATTGGGTCTTCCTCCGCAGAACTTTAGGACTGGGGAGTGGGGAGGGAGTTC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000051672.9 |
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| CDS-3UTR TCA 90 bp | CTCCCTCCCCACTCCCCAGTCCTAAAGTTCTGCGGAGGAAGACCCAATCTGGAGTGCTGCTCCAGGGCTTaGGACACCTTCTTCTCCAGG | + |
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Preference number: 4 (lower is better) Translates to: LPPHSPVLKFCGGRPNLECCSRA*DTFFSR Trigger: CCTGGAGAAGAAGGTGTCTCAAGCCCTGGAGCAGCA...CTCCAGATTGGGTCTTCCTCCGCAGAACTTTAGGACTGGGGAGTGGGGAGGGAG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000051672.9 |
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| CDS-3UTR GCA 90 bp | CTCCCTCCCCACTCCCCAGTCCTAAAGTTCTGCGGAGGAAGACCCAATCTGGAGAGACCACCATGGAGCTaGCAGAGTTCACCTGCACTG | + |
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Preference number: 4 (lower is better) Translates to: LPPHSPVLKFCGGRPNLERPPWS*QSSPAL Trigger: CAGTGCAGGTGAACTCTGGCAGCTCCATGGTGGTCT...CTCCAGATTGGGTCTTCCTCCGCAGAACTTTAGGACTGGGGAGTGGGGAGGGAG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000051672.9 |
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| CDS-3UTR GCA 90 bp | CTCCCTCCCCACTCCCCAGTCCTAAAGTTCTGCGGAGGAAGACCCAATCTGGAGCTGCCAGAGTTCACCTaGACTGTGCTAGAAGTCTCC | + |
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Preference number: 4 (lower is better) Translates to: LPPHSPVLKFCGGRPNLELPEFT*TVLEVS Trigger: GGAGACTTCTAGCACAGTGCAGGTGAACTCTGGCAG...CTCCAGATTGGGTCTTCCTCCGCAGAACTTTAGGACTGGGGAGTGGGGAGGGAG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000051672.9 |
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| CDS-3UTR GCA 90 bp | ACTCCCTCCCCACTCCCCAGTCCTAAAGTTCTGCGGAGGAAGACCCAATCTGGATCACCACGGTCAGGTTaGAGGAGTTTGCCTGTGTCT | + |
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Preference number: 4 (lower is better) Translates to: TPSPLPSPKVLRRKTQSGSPRSG*RSLPVS Trigger: AGACACAGGCAAACTCCTGCAACCTGACCGTGGTGA...TCCAGATTGGGTCTTCCTCCGCAGAACTTTAGGACTGGGGAGTGGGGAGGGAGT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000051672.9 |
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| CDS-3UTR CCA 90 bp | CCCCCTAGTGGTTTCCACATCCTCAGGGCTGCCAGGACCTCTCCAGAGTCACTACTAGAAGTCTCCTTTTaGATCCTCAGATTCTCCAGC | + |
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Preference number: 4 (lower is better) Translates to: PPSGFHILRAARTSPESLLEVSF*ILRFSS Trigger: GCTGGAGAATCTGAGGATCCAAAAGGAGACTTCTAG...TAGTGACTCTGGAGAGGTCCTGGCAGCCCTGAGGATGTGGAAACCACTAGGGGG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000051672.9 |
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| CDS GCA 90 bp | GTCTCGGCCTGCAGCAGACTGTCCTGGGTGCGGGTGAGCTGGCGCTaGAACAGGTGCGTGGTGTTCCGGCACTCAGCCTGCGCTCGCAAC | + |
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Preference number: 5 (lower is better) Translates to: VSACSRLSWVRVSWR*NRCVVFRHSACARN Trigger: GTTGCGAGCGCAGGCTGAGTGCCGGAACACCACGCACCTGTTGCAGCGCCAGCTCACCCGCACCCAGGACAGTCTGCTGCAGGCCGAGAC 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000051672.9 |
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| CDS CCA 90 bp | GCCTGTGTCTCGGCCTGCAGCAGACTGTCCTGGGTGCGGGTGAGCTaGCGCTGCAACAGGTGCGTGGTGTTCCGGCACTCAGCCTGCGCT | + |
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Preference number: 5 (lower is better) Translates to: ACVSACSRLSWVRVS*RCNRCVVFRHSACA Trigger: AGCGCAGGCTGAGTGCCGGAACACCACGCACCTGTTGCAGCGCCAGCTCACCCGCACCCAGGACAGTCTGCTGCAGGCCGAGACACAGGC 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000051672.9 |
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| CDS TCA 90 bp | AGTTTGCCTGTGTCTCGGCCTGCAGCAGACTGTCCTGGGTGCGGGTaGGCTGGCGCTGCAACAGGTGCGTGGTGTTCCGGCACTCAGCCT | + |
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Preference number: 5 (lower is better) Translates to: SLPVSRPAADCPGCG*AGAATGAWCSGTQP Trigger: AGGCTGAGTGCCGGAACACCACGCACCTGTTGCAGCGCCAGCTCACCCGCACCCAGGACAGTCTGCTGCAGGCCGAGACACAGGCAAACT 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000051672.9 |
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| CDS CCA 90 bp | AGGTTGCAGGAGTTTGCCTGTGTCTCGGCCTGCAGCAGACTGTCCTaGGTGCGGGTGAGCTGGCGCTGCAACAGGTGCGTGGTGTTCCGG | + |
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Preference number: 5 (lower is better) Translates to: RLQEFACVSACSRLS*VRVSWRCNRCVVFR Trigger: CCGGAACACCACGCACCTGTTGCAGCGCCAGCTCACCCGCACCCAGGACAGTCTGCTGCAGGCCGAGACACAGGCAAACTCCTGCAACCT 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000051672.9 |
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| CDS GCA 90 bp | CTCCAGGGACTCCTGAAGGGTCACCACGGTCAGGTTGCAGGAGTTTaGCTGTGTCTCGGCCTGCAGCAGACTGTCCTGGGTGCGGGTGAG | + |
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Preference number: 5 (lower is better) Translates to: LQGLLKGHHGQVAGV*LCLGLQQTVLGAGE Trigger: CTCACCCGCACCCAGGACAGTCTGCTGCAGGCCGAGACACAGGCAAACTCCTGCAACCTGACCGTGGTGACCCTTCAGGAGTCCCTGGAG 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000051672.9 |
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| CDS GCA 90 bp | ACACCTTCTTCTCCAGGGACTCCTGAAGGGTCACCACGGTCAGGTTaGAGGAGTTTGCCTGTGTCTCGGCCTGCAGCAGACTGTCCTGGG | + |
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Preference number: 5 (lower is better) Translates to: TPSSPGTPEGSPRSG*RSLPVSRPAADCPG Trigger: CCCAGGACAGTCTGCTGCAGGCCGAGACACAGGCAAACTCCTGCAACCTGACCGTGGTGACCCTTCAGGAGTCCCTGGAGAAGAAGGTGT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000051672.9 |
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| CDS-3UTR CAA 90 bp | GAACTCCCTCCCCACTCCCCAGTCCTAAAGTTCTGCGGAGGAAGACCCAATCTGCTGCTGCTCCAGGGCTaGAGACACCTTCTTCTCCAG | + |
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Preference number: 5 (lower is better) Translates to: ELPPHSPVLKFCGGRPNLLLLQG*RHLLLQ Trigger: CTGGAGAAGAAGGTGTCTCAAGCCCTGGAGCAGCAG...CAGATTGGGTCTTCCTCCGCAGAACTTTAGGACTGGGGAGTGGGGAGGGAGTTC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000051672.9 |
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| CDS-3UTR CAA 90 bp | CCCCCTAGTGGTTTCCACATCCTCAGGGCTGCCAGGACCTCTCCAGAGTCACTAAGGAACAGTGACACTTaGAGCACCAGTAGGCTGGAG | + |
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Preference number: 5 (lower is better) Translates to: PPSGFHILRAARTSPESLRNSDT*STSRLE Trigger: CTCCAGCCTACTGGTGCTCAAAGTGTCACTGTTCCT...TAGTGACTCTGGAGAGGTCCTGGCAGCCCTGAGGATGTGGAAACCACTAGGGGG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000051672.9 |
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| CDS GCA 90 bp | AGCACCAGTAGGCTGGAGACCACCATGGAGCTGCCAGAGTTCACCTaGACTGTGCTAGAAGTCTCCTTTTGGATCCTCAGATTCTCCAGC | + |
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Preference number: 5 (lower is better) Translates to: STSRLETTMELPEFT*TVLEVSFWILRFSS Trigger: GCTGGAGAATCTGAGGATCCAAAAGGAGACTTCTAGCACAGTGCAGGTGAACTCTGGCAGCTCCATGGTGGTCTCCAGCCTACTGGTGCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000051672.9 |
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| CDS-3UTR CAA 90 bp | GAACTCCCTCCCCACTCCCCAGTCCTAAAGTTCTGCGGAGGAAGACCCAATCTGGCTAGAAGTCTCCTTTaGGATCCTCAGATTCTCCAG | + |
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Preference number: 5 (lower is better) Translates to: ELPPHSPVLKFCGGRPNLARSLL*DPQILQ Trigger: CTGGAGAATCTGAGGATCCAAAAGGAGACTTCTAGC...CAGATTGGGTCTTCCTCCGCAGAACTTTAGGACTGGGGAGTGGGGAGGGAGTTC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000051672.9 |
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| CDS TCA 72 bp | GTGTCTCGGCCTGCAGCAGACTGTCCTGGGTGCGGGTaGGCTGGCGCTGCAACAGGTGCGTGGTGTTCCGGC | + |
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Preference number: 6 (lower is better) Translates to: VSRPAADCPGCG*AGAATGAWCSG Trigger: GCCGGAACACCACGCACCTGTTGCAGCGCCAGCTCACCCGCACCCAGGACAGTCTGCTGCAGGCCGAGACAC 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000051672.9 |
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| CDS GCA 72 bp | CTGTCCTGGGTGCGGGTGAGCTGGCGCTGCAACAGGTaGGTGGTGTTCCGGCACTCAGCCTGCGCTCGCAAC | + |
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Preference number: 6 (lower is better) Translates to: LSWVRVSWRCNR*VVFRHSACARN Trigger: GTTGCGAGCGCAGGCTGAGTGCCGGAACACCACGCACCTGTTGCAGCGCCAGCTCACCCGCACCCAGGACAG 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000051672.9 |
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| CDS GCA 72 bp | TGCAGCAGACTGTCCTGGGTGCGGGTGAGCTGGCGCTaGAACAGGTGCGTGGTGTTCCGGCACTCAGCCTGC | + |
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Preference number: 6 (lower is better) Translates to: CSRLSWVRVSWR*NRCVVFRHSAC Trigger: GCAGGCTGAGTGCCGGAACACCACGCACCTGTTGCAGCGCCAGCTCACCCGCACCCAGGACAGTCTGCTGCA 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000051672.9 |
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| CDS CCA 72 bp | TCGGCCTGCAGCAGACTGTCCTGGGTGCGGGTGAGCTaGCGCTGCAACAGGTGCGTGGTGTTCCGGCACTCA | + |
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Preference number: 6 (lower is better) Translates to: SACSRLSWVRVS*RCNRCVVFRHS Trigger: TGAGTGCCGGAACACCACGCACCTGTTGCAGCGCCAGCTCACCCGCACCCAGGACAGTCTGCTGCAGGCCGA 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000051672.9 |
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| CDS CCA 72 bp | GAGTTTGCCTGTGTCTCGGCCTGCAGCAGACTGTCCTaGGTGCGGGTGAGCTGGCGCTGCAACAGGTGCGTG | + |
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Preference number: 6 (lower is better) Translates to: EFACVSACSRLS*VRVSWRCNRCV Trigger: CACGCACCTGTTGCAGCGCCAGCTCACCCGCACCCAGGACAGTCTGCTGCAGGCCGAGACACAGGCAAACTC 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000051672.9 |
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| CDS GCA 72 bp | CTCCTGAAGGGTCACCACGGTCAGGTTGCAGGAGTTTaGCTGTGTCTCGGCCTGCAGCAGACTGTCCTGGGT | + |
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Preference number: 6 (lower is better) Translates to: LLKGHHGQVAGV*LCLGLQQTVLG Trigger: ACCCAGGACAGTCTGCTGCAGGCCGAGACACAGGCAAACTCCTGCAACCTGACCGTGGTGACCCTTCAGGAG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000051672.9 |
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| CDS GCA 72 bp | TCTCCAGGGACTCCTGAAGGGTCACCACGGTCAGGTTaGAGGAGTTTGCCTGTGTCTCGGCCTGCAGCAGAC | + |
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Preference number: 6 (lower is better) Translates to: SPGTPEGSPRSG*RSLPVSRPAAD Trigger: GTCTGCTGCAGGCCGAGACACAGGCAAACTCCTGCAACCTGACCGTGGTGACCCTTCAGGAGTCCCTGGAGA 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000051672.9 |
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| CDS CAA 72 bp | ACTCCTGAAGGGTCACCACGGTCAGGTTGCAGGAGTTaGCCTGTGTCTCGGCCTGCAGCAGACTGTCCTGGG | + |
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Preference number: 6 (lower is better) Translates to: TPEGSPRSGCRS*PVSRPAADCPG Trigger: CCCAGGACAGTCTGCTGCAGGCCGAGACACAGGCAAACTCCTGCAACCTGACCGTGGTGACCCTTCAGGAGT 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000051672.9 |
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| CDS CAA 72 bp | CTCAAGCTCCTTGATGCGGGCCTGCTGCTCCAGGGCTaGAGACACCTTCTTCTCCAGGGACTCCTGAAGGGT | + |
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Preference number: 6 (lower is better) Translates to: LKLLDAGLLLQG*RHLLLQGLLKG Trigger: ACCCTTCAGGAGTCCCTGGAGAAGAAGGTGTCTCAAGCCCTGGAGCAGCAGGCCCGCATCAAGGAGCTTGAG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000051672.9 |
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| CDS GCA 72 bp | AGGCTGGAGACCACCATGGAGCTGCCAGAGTTCACCTaGACTGTGCTAGAAGTCTCCTTTTGGATCCTCAGA | + |
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Preference number: 6 (lower is better) Translates to: RLETTMELPEFT*TVLEVSFWILR Trigger: TCTGAGGATCCAAAAGGAGACTTCTAGCACAGTGCAGGTGAACTCTGGCAGCTCCATGGTGGTCTCCAGCCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000051672.9 |
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| CDS CCA 72 bp | GAAGTCTCCTTTTGGATCCTCAGATTCTCCAGCTCCTaGTTCAGCTTCGTGACTTCATTCTCAAGCTCCTTG | + |
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Preference number: 6 (lower is better) Translates to: EVSFWILRFSSS*FSFVTSFSSSL Trigger: CAAGGAGCTTGAGAATGAAGTCACGAAGCTGAACCAGGAGCTGGAGAATCTGAGGATCCAAAAGGAGACTTC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000051672.9 |
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