RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for BSPH2 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000078800

Ensembl transcript IDs: ENSMUST00000108526.6, ENSMUST00000202285.2

Found 15 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
CDS-3UTR GCA 90 bp ATTGCTTCCATTTTCCATCTTGGTTGTAATTTTCAGTCAATGAACACCAACTCCGCTAGGAACACCCAGTaGACAAGATGGCTCATCACT +
Preference number: 4 (lower is better)
Translates to: IASIFHLGCNFQSMNTNSARNTQ*TRWLIT
Trigger: AGTGATGAGCCATCTTGTGCACTGGGTGTTCCTAGC...GGAGTTGGTGTTCATTGACTGAAAATTACAACCAAGATGGAAAATGGAAGCAAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000202285.2
CDS-3UTR CCA 90 bp ATTGCTTCCATTTTCCATCTTGGTTGTAATTTTCAGTCAATGAACACCAACTCCAGGGAAAATACACTTTaGGGGATCCTGTGCTGTACA +
Preference number: 4 (lower is better)
Translates to: IASIFHLGCNFQSMNTNSRENTL*GILCCT
Trigger: TGTACAGCACAGGATCCCCCAAAGTGTATTTTCCCT...GGAGTTGGTGTTCATTGACTGAAAATTACAACCAAGATGGAAAATGGAAGCAAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENSMUST00000202285.2
CDS-3UTR TCA 90 bp ATTGCTTCCATTTTCCATCTTGGTTGTAATTTTCAGTCAATGAACACCAACTCCTCTGGAGGATGTAAATaGGAGATCAATTCTGCATTC +
Preference number: 4 (lower is better)
Translates to: IASIFHLGCNFQSMNTNSSGGCK*EINSAF
Trigger: GAATGCAGAATTGATCTCTCATTTACATCCTCCAGA...GGAGTTGGTGTTCATTGACTGAAAATTACAACCAAGATGGAAAATGGAAGCAAT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000202285.2
CDS-3UTR GCA 90 bp ATTGCTTCCATTTTCCATCTTGGTTGTAATTTTCAGTCAATGAACACCAACTCCATGAGAGATCAATTCTaGATTCAGCTCATACATGTA +
Preference number: 4 (lower is better)
Translates to: IASIFHLGCNFQSMNTNSMRDQF*IQLIHV
Trigger: TACATGTATGAGCTGAATGCAGAATTGATCTCTCAT...GGAGTTGGTGTTCATTGACTGAAAATTACAACCAAGATGGAAAATGGAAGCAAT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000202285.2
CDS GCA 90 bp CTTCTGTTTGAATTGGAAAGGGAAAATACACTTTGGGGGATCCTGTaGTGTACAGTACCGCCACCTTCCTTGGAATTGAAAGTCAAGAGA +
Preference number: 5 (lower is better)
Translates to: LLFELERENTLWGIL*CTVPPPSLELKVKR
Trigger: TCTCTTGACTTTCAATTCCAAGGAAGGTGGCGGTACTGTACAGCACAGGATCCCCCAAAGTGTATTTTCCCTTTCCAATTCAAACAGAAG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000108526.6
ENSMUST00000202285.2
CDS CCA 90 bp CTTCTTAATGAGCTTCTGTTTGAATTGGAAAGGGAAAATACACTTTaGGGGATCCTGTGCTGTACAGTACCGCCACCTTCCTTGGAATTG +
Preference number: 5 (lower is better)
Translates to: LLNELLFELERENTL*GILCCTVPPPSLEL
Trigger: CAATTCCAAGGAAGGTGGCGGTACTGTACAGCACAGGATCCCCCAAAGTGTATTTTCCCTTTCCAATTCAAACAGAAGCTCATTAAGAAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000108526.6
ENSMUST00000202285.2
CDS CCA 90 bp GTGGAGGGAGATACAACTGTAGTGGAATCCATCAGCATAAACAAATaGAAAAACACAGCTATCAGTAGAAATCTCTTGTTCTGGAGGATG +
Preference number: 5 (lower is better)
Translates to: VEGDTTVVESISINK*KNTAISRNLLFWRM
Trigger: CATCCTCCAGAACAAGAGATTTCTACTGATAGCTGTGTTTTTCCATTTGTTTATGCTGATGGATTCCACTACAGTTGTATCTCCCTCCAC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000108526.6
CDS-3UTR CAA 90 bp ATTGCTTCCATTTTCCATCTTGGTTGTAATTTTCAGTCAATGAACACCAACTCCGTACCGCCACCTTCCTaGGAATTGAAAGTCAAGAGA +
Preference number: 5 (lower is better)
Translates to: IASIFHLGCNFQSMNTNSVPPPS*ELKVKR
Trigger: TCTCTTGACTTTCAATTCCAAGGAAGGTGGCGGTAC...GGAGTTGGTGTTCATTGACTGAAAATTACAACCAAGATGGAAAATGGAAGCAAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000202285.2
CDS-3UTR CAA 90 bp ATTGCTTCCATTTTCCATCTTGGTTGTAATTTTCAGTCAATGAACACCAACTCCCCACCTTCCTTGGAATaGAAAGTCAAGAGAACACCA +
Preference number: 5 (lower is better)
Translates to: IASIFHLGCNFQSMNTNSPPSLE*KVKRTP
Trigger: TGGTGTTCTCTTGACTTTCAATTCCAAGGAAGGTGG...GGAGTTGGTGTTCATTGACTGAAAATTACAACCAAGATGGAAAATGGAAGCAAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000202285.2
CDS CAA 90 bp CTTTGGGGGATCCTGTGCTGTACAGTACCGCCACCTTCCTTGGAATaGAAAGTCAAGAGAACACCAATCATAGTCACTGTGGAGGGAGAT +
Preference number: 6 (lower is better)
Translates to: LWGILCCTVPPPSLE*KVKRTPIIVTVEGD
Trigger: ATCTCCCTCCACAGTGACTATGATTGGTGTTCTCTTGACTTTCAATTCCAAGGAAGGTGGCGGTACTGTACAGCACAGGATCCCCCAAAG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000108526.6
ENSMUST00000202285.2
CDS CCA 72 bp GAGCTTCTGTTTGAATTGGAAAGGGAAAATACACTTTaGGGGATCCTGTGCTGTACAGTACCGCCACCTTCC +
Preference number: 6 (lower is better)
Translates to: ELLFELERENTL*GILCCTVPPPS
Trigger: GGAAGGTGGCGGTACTGTACAGCACAGGATCCCCCAAAGTGTATTTTCCCTTTCCAATTCAAACAGAAGCTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000108526.6
ENSMUST00000202285.2
CDS CAA 72 bp TGGGGGATCCTGTGCTGTACAGTACCGCCACCTTCCTaGGAATTGAAAGTCAAGAGAACACCAATCATAGTC +
Preference number: 6 (lower is better)
Translates to: WGILCCTVPPPS*ELKVKRTPIIV
Trigger: GACTATGATTGGTGTTCTCTTGACTTTCAATTCCAAGGAAGGTGGCGGTACTGTACAGCACAGGATCCCCCA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000108526.6
ENSMUST00000202285.2
CDS GCA 72 bp GAATTGGAAAGGGAAAATACACTTTGGGGGATCCTGTaGTGTACAGTACCGCCACCTTCCTTGGAATTGAAA +
Preference number: 6 (lower is better)
Translates to: ELERENTLWGIL*CTVPPPSLELK
Trigger: TTTCAATTCCAAGGAAGGTGGCGGTACTGTACAGCACAGGATCCCCCAAAGTGTATTTTCCCTTTCCAATTC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000108526.6
ENSMUST00000202285.2
CDS CAA 72 bp ATCCTGTGCTGTACAGTACCGCCACCTTCCTTGGAATaGAAAGTCAAGAGAACACCAATCATAGTCACTGTG +
Preference number: 6 (lower is better)
Translates to: ILCCTVPPPSLE*KVKRTPIIVTV
Trigger: CACAGTGACTATGATTGGTGTTCTCTTGACTTTCAATTCCAAGGAAGGTGGCGGTACTGTACAGCACAGGAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000108526.6
ENSMUST00000202285.2
CDS CAA 90 bp AATATAGCCCTCCTTGGTGCACTTCTTAATGAGCTTCTGTTTGAATaGGAAAGGGAAAATACACTTTGGGGGATCCTGTGCTGTACAGTA +
Preference number: 6 (lower is better)
Translates to: NIALLGALLNELLFE*ERENTLWGILCCTV
Trigger: TACTGTACAGCACAGGATCCCCCAAAGTGTATTTTCCCTTTCCAATTCAAACAGAAGCTCATTAAGAAGTGCACCAAGGAGGGCTATATT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000108526.6
ENSMUST00000202285.2