Pregenerated sensors for BSPH1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000074378Ensembl transcript IDs: ENSMUST00000098811.4, ENSMUST00000204715.2
Found 16 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS-3UTR GCA 90 bp | TTTAATGAAGATTCAACCTCTTCAGGAGGGAAAGTCCTTTCCAAAAAGAATTTGGAACGGAAAGACACATaGACCATCTTCTGTCTCTGG | + |
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Preference number: 4 (lower is better) Translates to: FNEDSTSSGGKVLSKKNLERKDT*TIFCLW Trigger: CCAGAGACAGAAGATGGTGCATGTGTCTTTCCGTTC...CAAATTCTTTTTGGAAAGGACTTTCCCTCCTGAAGAGGTTGAATCTTCATTAAA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000098811.4 |
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| CDS-3UTR GCA 90 bp | CTTCAATTTATATGCCTAGCAAATAGAAAGTGGTGGTTGAAGAATAACGCTCCACCTCTCCATCCTCTGTaGAATCCCAGTAGATCATAT | + |
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Preference number: 4 (lower is better) Translates to: LQFICLANRKWWLKNNAPPLHPL*NPSRSY Trigger: ATATGATCTACTGGGATTGCACAGAGGATGGAGAGG...TGGAGCGTTATTCTTCAACCACCACTTTCTATTTGCTAGGCATATAAATTGAAG 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000098811.4 |
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| CDS-3UTR TCA 90 bp | TGGCTTCAATTTATATGCCTAGCAAATAGAAAGTGGTGGTTGAAGAATAACGCTTGTTGTAATTTGGGGTaGGTGAACACCACTTTTTCC | + |
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Preference number: 4 (lower is better) Translates to: WLQFICLANRKWWLKNNACCNLG*VNTTFS Trigger: GGAAAAAGTGGTGTTCACTCACCCCAAATTACAACA...AGCGTTATTCTTCAACCACCACTTTCTATTTGCTAGGCATATAAATTGAAGCCA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000098811.4 |
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| CDS-3UTR GCA 90 bp | TTTAATGAAGATTCAACCTCTTCAGGAGGGAAAGTCCTTTCCAAAAAGAATTTGCCTCTCCATCCTCTGTaGAATCCCAGTAGATCATAT | + |
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Preference number: 4 (lower is better) Translates to: FNEDSTSSGGKVLSKKNLPLHPL*NPSRSY Trigger: ATATGATCTACTGGGATTGCACAGAGGATGGAGAGG...CAAATTCTTTTTGGAAAGGACTTTCCCTCCTGAAGAGGTTGAATCTTCATTAAA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000098811.4 ENSMUST00000204715.2 |
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| CDS-3UTR GCA 90 bp | TTTAATGAAGATTCAACCTCTTCAGGAGGGAAAGTCCTTTCCAAAAAGAATTTGGAACGGAAAGACACATaGACCATCTATAGTTGGTGC | + |
|
Preference number: 4 (lower is better) Translates to: FNEDSTSSGGKVLSKKNLERKDT*TIYSWC Trigger: GCACCAACTATAGATGGTGCATGTGTCTTTCCGTTC...CAAATTCTTTTTGGAAAGGACTTTCCCTCCTGAAGAGGTTGAATCTTCATTAAA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000204715.2 |
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| CDS-3UTR TCA 90 bp | TTTAATGAAGATTCAACCTCTTCAGGAGGGAAAGTCCTTTCCAAAAAGAATTTGAAACTGAAAAGGCTGTaGAACAGGCAGATTGAAACC | + |
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Preference number: 4 (lower is better) Translates to: FNEDSTSSGGKVLSKKNLKLKRL*NRQIET Trigger: GGTTTCAATCTGCCTGTTTCACAGCCTTTTCAGTTT...CAAATTCTTTTTGGAAAGGACTTTCCCTCCTGAAGAGGTTGAATCTTCATTAAA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000098811.4 ENSMUST00000204715.2 |
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| CDS-3UTR TCA 90 bp | TTTAATGAAGATTCAACCTCTTCAGGAGGGAAAGTCCTTTCCAAAAAGAATTTGTGTTGTAATTTGGGGTaGGTGAACACCACTTTTTCC | + |
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Preference number: 4 (lower is better) Translates to: FNEDSTSSGGKVLSKKNLCCNLG*VNTTFS Trigger: GGAAAAAGTGGTGTTCACTCACCCCAAATTACAACA...CAAATTCTTTTTGGAAAGGACTTTCCCTCCTGAAGAGGTTGAATCTTCATTAAA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 2 transcripts: ENSMUST00000098811.4 ENSMUST00000204715.2 |
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| CDS-3UTR CCA 90 bp | TTTAATGAAGATTCAACCTCTTCAGGAGGGAAAGTCCTTTCCAAAAAGAATTTGTGCACCATCTATAGTTaGTGCATAATAATCTTCTAC | + |
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Preference number: 4 (lower is better) Translates to: FNEDSTSSGGKVLSKKNLCTIYS*CIIIFY Trigger: GTAGAAGATTATTATGCACCAACTATAGATGGTGCA...CAAATTCTTTTTGGAAAGGACTTTCCCTCCTGAAGAGGTTGAATCTTCATTAAA 34% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000204715.2 |
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| CDS TCA 90 bp | ACTCTATACAATATTTCCAAACTTGGTCTTTGTTGTAATTTGGGGTaGGTGAACACCACTTTTTCCCAAACACCTCTCCATCCTCTGTGC | + |
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Preference number: 5 (lower is better) Translates to: TLYNISKLGLCCNLG*VNTTFSQTPLHPLC Trigger: GCACAGAGGATGGAGAGGTGTTTGGGAAAAAGTGGTGTTCACTCACCCCAAATTACAACAAAGACCAAGTTTGGAAATATTGTATAGAGT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000098811.4 ENSMUST00000204715.2 |
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| CDS TCA 90 bp | TATACAATATTTCCAAACTTGGTCTTTGTTGTAATTTGGGGTGAGTaGACACCACTTTTTCCCAAACACCTCTCCATCCTCTGTGCAATC | + |
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Preference number: 5 (lower is better) Translates to: YTIFPNLVFVVIWGE*TPLFPKHLSILCAI Trigger: GATTGCACAGAGGATGGAGAGGTGTTTGGGAAAAAGTGGTGTTCACTCACCCCAAATTACAACAAAGACCAAGTTTGGAAATATTGTATA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000098811.4 ENSMUST00000204715.2 |
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| CDS GCA 90 bp | ACTTCTATACAAGAACGGAAAGACACATGCACCATCTATAGTTGGTaGATAATAATCTTCTACTTGAAAACTGAAAAGGCTGTGAAACAG | + |
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Preference number: 5 (lower is better) Translates to: TSIQERKDTCTIYSW*IIIFYLKTEKAVKQ Trigger: CTGTTTCACAGCCTTTTCAGTTTTCAAGTAGAAGATTATTATGCACCAACTATAGATGGTGCATGTGTCTTTCCGTTCTTGTATAGAAGT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000204715.2 |
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| CDS-3UTR CAA 90 bp | TTTAATGAAGATTCAACCTCTTCAGGAGGGAAAGTCCTTTCCAAAAAGAATTTGGTATTTCCAGTAACCTaGGTAAGTCTTGTTCAAAGA | + |
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Preference number: 5 (lower is better) Translates to: FNEDSTSSGGKVLSKKNLVFPVT*VSLVQR Trigger: TCTTTGAACAAGACTTACCAAGGTTACTGGAAATAC...CAAATTCTTTTTGGAAAGGACTTTCCCTCCTGAAGAGGTTGAATCTTCATTAAA 36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000098811.4 ENSMUST00000204715.2 |
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| CDS TCA 72 bp | TCTGTACCAGAAGGGAAAGGCACATGGAGCATAGTCTaGAAGAGCACAGTATTTCCAGTAACCTTGGTAAGT | + |
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Preference number: 6 (lower is better) Translates to: SVPEGKGTWSIV*KSTVFPVTLVS Trigger: ACTTACCAAGGTTACTGGAAATACTGTGCTCTTTCAGACTATGCTCCATGTGCCTTTCCCTTCTGGTACAGA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000098811.4 ENSMUST00000204715.2 |
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| CDS TCA 72 bp | AATATTTCCAAACTTGGTCTTTGTTGTAATTTGGGGTaGGTGAACACCACTTTTTCCCAAACACCTCTCCAT | + |
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Preference number: 6 (lower is better) Translates to: NISKLGLCCNLG*VNTTFSQTPLH Trigger: ATGGAGAGGTGTTTGGGAAAAAGTGGTGTTCACTCACCCCAAATTACAACAAAGACCAAGTTTGGAAATATT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000098811.4 ENSMUST00000204715.2 |
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| CDS GCA 72 bp | CAAGAACGGAAAGACACATGCACCATCTATAGTTGGTaGATAATAATCTTCTACTTGAAAACTGAAAAGGCT | + |
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Preference number: 6 (lower is better) Translates to: QERKDTCTIYSW*IIIFYLKTEKA Trigger: AGCCTTTTCAGTTTTCAAGTAGAAGATTATTATGCACCAACTATAGATGGTGCATGTGTCTTTCCGTTCTTG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000204715.2 |
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| CDS CCA 72 bp | ATACAAGAACGGAAAGACACATGCACCATCTATAGTTaGTGCATAATAATCTTCTACTTGAAAACTGAAAAG | + |
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Preference number: 6 (lower is better) Translates to: IQERKDTCTIYS*CIIIFYLKTEK Trigger: CTTTTCAGTTTTCAAGTAGAAGATTATTATGCACCAACTATAGATGGTGCATGTGTCTTTCCGTTCTTGTAT 35% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000204715.2 |
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