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Pregenerated sensors for BSPH1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000074378

Ensembl transcript IDs: ENSMUST00000098811.4, ENSMUST00000204715.2

Found 16 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
CDS-3UTR GCA 90 bp TTTAATGAAGATTCAACCTCTTCAGGAGGGAAAGTCCTTTCCAAAAAGAATTTGGAACGGAAAGACACATaGACCATCTTCTGTCTCTGG +
Preference number: 4 (lower is better)
Translates to: FNEDSTSSGGKVLSKKNLERKDT*TIFCLW
Trigger: CCAGAGACAGAAGATGGTGCATGTGTCTTTCCGTTC...CAAATTCTTTTTGGAAAGGACTTTCCCTCCTGAAGAGGTTGAATCTTCATTAAA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000098811.4
CDS-3UTR GCA 90 bp CTTCAATTTATATGCCTAGCAAATAGAAAGTGGTGGTTGAAGAATAACGCTCCACCTCTCCATCCTCTGTaGAATCCCAGTAGATCATAT +
Preference number: 4 (lower is better)
Translates to: LQFICLANRKWWLKNNAPPLHPL*NPSRSY
Trigger: ATATGATCTACTGGGATTGCACAGAGGATGGAGAGG...TGGAGCGTTATTCTTCAACCACCACTTTCTATTTGCTAGGCATATAAATTGAAG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000098811.4
CDS-3UTR TCA 90 bp TGGCTTCAATTTATATGCCTAGCAAATAGAAAGTGGTGGTTGAAGAATAACGCTTGTTGTAATTTGGGGTaGGTGAACACCACTTTTTCC +
Preference number: 4 (lower is better)
Translates to: WLQFICLANRKWWLKNNACCNLG*VNTTFS
Trigger: GGAAAAAGTGGTGTTCACTCACCCCAAATTACAACA...AGCGTTATTCTTCAACCACCACTTTCTATTTGCTAGGCATATAAATTGAAGCCA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000098811.4
CDS-3UTR GCA 90 bp TTTAATGAAGATTCAACCTCTTCAGGAGGGAAAGTCCTTTCCAAAAAGAATTTGCCTCTCCATCCTCTGTaGAATCCCAGTAGATCATAT +
Preference number: 4 (lower is better)
Translates to: FNEDSTSSGGKVLSKKNLPLHPL*NPSRSY
Trigger: ATATGATCTACTGGGATTGCACAGAGGATGGAGAGG...CAAATTCTTTTTGGAAAGGACTTTCCCTCCTGAAGAGGTTGAATCTTCATTAAA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000098811.4
ENSMUST00000204715.2
CDS-3UTR GCA 90 bp TTTAATGAAGATTCAACCTCTTCAGGAGGGAAAGTCCTTTCCAAAAAGAATTTGGAACGGAAAGACACATaGACCATCTATAGTTGGTGC +
Preference number: 4 (lower is better)
Translates to: FNEDSTSSGGKVLSKKNLERKDT*TIYSWC
Trigger: GCACCAACTATAGATGGTGCATGTGTCTTTCCGTTC...CAAATTCTTTTTGGAAAGGACTTTCCCTCCTGAAGAGGTTGAATCTTCATTAAA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000204715.2
CDS-3UTR TCA 90 bp TTTAATGAAGATTCAACCTCTTCAGGAGGGAAAGTCCTTTCCAAAAAGAATTTGAAACTGAAAAGGCTGTaGAACAGGCAGATTGAAACC +
Preference number: 4 (lower is better)
Translates to: FNEDSTSSGGKVLSKKNLKLKRL*NRQIET
Trigger: GGTTTCAATCTGCCTGTTTCACAGCCTTTTCAGTTT...CAAATTCTTTTTGGAAAGGACTTTCCCTCCTGAAGAGGTTGAATCTTCATTAAA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000098811.4
ENSMUST00000204715.2
CDS-3UTR TCA 90 bp TTTAATGAAGATTCAACCTCTTCAGGAGGGAAAGTCCTTTCCAAAAAGAATTTGTGTTGTAATTTGGGGTaGGTGAACACCACTTTTTCC +
Preference number: 4 (lower is better)
Translates to: FNEDSTSSGGKVLSKKNLCCNLG*VNTTFS
Trigger: GGAAAAAGTGGTGTTCACTCACCCCAAATTACAACA...CAAATTCTTTTTGGAAAGGACTTTCCCTCCTGAAGAGGTTGAATCTTCATTAAA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000098811.4
ENSMUST00000204715.2
CDS-3UTR CCA 90 bp TTTAATGAAGATTCAACCTCTTCAGGAGGGAAAGTCCTTTCCAAAAAGAATTTGTGCACCATCTATAGTTaGTGCATAATAATCTTCTAC +
Preference number: 4 (lower is better)
Translates to: FNEDSTSSGGKVLSKKNLCTIYS*CIIIFY
Trigger: GTAGAAGATTATTATGCACCAACTATAGATGGTGCA...CAAATTCTTTTTGGAAAGGACTTTCCCTCCTGAAGAGGTTGAATCTTCATTAAA
34% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000204715.2
CDS TCA 90 bp ACTCTATACAATATTTCCAAACTTGGTCTTTGTTGTAATTTGGGGTaGGTGAACACCACTTTTTCCCAAACACCTCTCCATCCTCTGTGC +
Preference number: 5 (lower is better)
Translates to: TLYNISKLGLCCNLG*VNTTFSQTPLHPLC
Trigger: GCACAGAGGATGGAGAGGTGTTTGGGAAAAAGTGGTGTTCACTCACCCCAAATTACAACAAAGACCAAGTTTGGAAATATTGTATAGAGT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000098811.4
ENSMUST00000204715.2
CDS TCA 90 bp TATACAATATTTCCAAACTTGGTCTTTGTTGTAATTTGGGGTGAGTaGACACCACTTTTTCCCAAACACCTCTCCATCCTCTGTGCAATC +
Preference number: 5 (lower is better)
Translates to: YTIFPNLVFVVIWGE*TPLFPKHLSILCAI
Trigger: GATTGCACAGAGGATGGAGAGGTGTTTGGGAAAAAGTGGTGTTCACTCACCCCAAATTACAACAAAGACCAAGTTTGGAAATATTGTATA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000098811.4
ENSMUST00000204715.2
CDS GCA 90 bp ACTTCTATACAAGAACGGAAAGACACATGCACCATCTATAGTTGGTaGATAATAATCTTCTACTTGAAAACTGAAAAGGCTGTGAAACAG +
Preference number: 5 (lower is better)
Translates to: TSIQERKDTCTIYSW*IIIFYLKTEKAVKQ
Trigger: CTGTTTCACAGCCTTTTCAGTTTTCAAGTAGAAGATTATTATGCACCAACTATAGATGGTGCATGTGTCTTTCCGTTCTTGTATAGAAGT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000204715.2
CDS-3UTR CAA 90 bp TTTAATGAAGATTCAACCTCTTCAGGAGGGAAAGTCCTTTCCAAAAAGAATTTGGTATTTCCAGTAACCTaGGTAAGTCTTGTTCAAAGA +
Preference number: 5 (lower is better)
Translates to: FNEDSTSSGGKVLSKKNLVFPVT*VSLVQR
Trigger: TCTTTGAACAAGACTTACCAAGGTTACTGGAAATAC...CAAATTCTTTTTGGAAAGGACTTTCCCTCCTGAAGAGGTTGAATCTTCATTAAA
36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000098811.4
ENSMUST00000204715.2
CDS TCA 72 bp TCTGTACCAGAAGGGAAAGGCACATGGAGCATAGTCTaGAAGAGCACAGTATTTCCAGTAACCTTGGTAAGT +
Preference number: 6 (lower is better)
Translates to: SVPEGKGTWSIV*KSTVFPVTLVS
Trigger: ACTTACCAAGGTTACTGGAAATACTGTGCTCTTTCAGACTATGCTCCATGTGCCTTTCCCTTCTGGTACAGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000098811.4
ENSMUST00000204715.2
CDS TCA 72 bp AATATTTCCAAACTTGGTCTTTGTTGTAATTTGGGGTaGGTGAACACCACTTTTTCCCAAACACCTCTCCAT +
Preference number: 6 (lower is better)
Translates to: NISKLGLCCNLG*VNTTFSQTPLH
Trigger: ATGGAGAGGTGTTTGGGAAAAAGTGGTGTTCACTCACCCCAAATTACAACAAAGACCAAGTTTGGAAATATT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000098811.4
ENSMUST00000204715.2
CDS GCA 72 bp CAAGAACGGAAAGACACATGCACCATCTATAGTTGGTaGATAATAATCTTCTACTTGAAAACTGAAAAGGCT +
Preference number: 6 (lower is better)
Translates to: QERKDTCTIYSW*IIIFYLKTEKA
Trigger: AGCCTTTTCAGTTTTCAAGTAGAAGATTATTATGCACCAACTATAGATGGTGCATGTGTCTTTCCGTTCTTG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000204715.2
CDS CCA 72 bp ATACAAGAACGGAAAGACACATGCACCATCTATAGTTaGTGCATAATAATCTTCTACTTGAAAACTGAAAAG +
Preference number: 6 (lower is better)
Translates to: IQERKDTCTIYS*CIIIFYLKTEK
Trigger: CTTTTCAGTTTTCAAGTAGAAGATTATTATGCACCAACTATAGATGGTGCATGTGTCTTTCCGTTCTTGTAT
35% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000204715.2