Pregenerated sensors for BSDC1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000040859Ensembl transcript IDs: ENSMUST00000048162.10, ENSMUST00000138013.3
Found 119 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | AGATCTTCATGCGGCCCTCATTGTCTCAGGGTAAGAGCCCCAGGCTaGCTGTCTTCAGGAAGGAGGGCCTCTGCAGGAGACAGGAGTCTC | + |
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Preference number: 1 (lower is better) Translates to: RSSCGPHCLRVRAPG*LSSGRRASAGDRSL Trigger: GAGACTCCTGTCTCCTGCAGAGGCCCTCCTTCCTGAAGACAGTCAGCCTGGGGCTCTTACCCTGAGACAATGAGGGCCGCATGAAGATCT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048162.10 |
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| 3UTR TCA 90 bp | GTCTCAGGATGCTTGCCCCAGCACACCCCTTCAAGAACAGAGGGCTaGGGAGAAGCTGGCCTGGTGATGGACTGTGAGTACTCATCTCTG | + |
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Preference number: 1 (lower is better) Translates to: VSGCLPQHTPSRTEG*GEAGLVMDCEYSSL Trigger: CAGAGATGAGTACTCACAGTCCATCACCAGGCCAGCTTCTCCTCAGCCCTCTGTTCTTGAAGGGGTGTGCTGGGGCAAGCATCCTGAGAC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000048162.10 |
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| 3UTR TCA 90 bp | AGCTGCTTGGAGCAGTTATCCTACCAGGCAACACACCGGAGGGCCTaGAAGTGGCTCCCTCCCTTCTCGGGGAGGGAAAGAAATACAAGA | + |
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Preference number: 1 (lower is better) Translates to: SCLEQLSYQATHRRA*KWLPPFSGRERNTR Trigger: TCTTGTATTTCTTTCCCTCCCCGAGAAGGGAGGGAGCCACTTTCAGGCCCTCCGGTGTGTTGCCTGGTAGGATAACTGCTCCAAGCAGCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048162.10 |
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| 3UTR CCA 90 bp | GCATCTGACATAAAAGCCCTGGGAAGGTGTAGGGATATCCCGGCGTaGGTTAGAGGTGAGTCAAGGTGTGGTCTTAAGATTCTGAAGCCC | + |
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Preference number: 1 (lower is better) Translates to: ASDIKALGRCRDIPA*VRGESRCGLKILKP Trigger: GGGCTTCAGAATCTTAAGACCACACCTTGACTCACCTCTAACCCACGCCGGGATATCCCTACACCTTCCCAGGGCTTTTATGTCAGATGC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048162.10 |
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| 3UTR CCA 90 bp | GGGGAGGGAAAGAAATACAAGAGCAGACTCTTGCAGTGGCACAGATaGGCTAAGGACTTGGGTGCATCTGACATAAAAGCCCTGGGAAGG | + |
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Preference number: 1 (lower is better) Translates to: GEGKKYKSRLLQWHR*AKDLGASDIKALGR Trigger: CCTTCCCAGGGCTTTTATGTCAGATGCACCCAAGTCCTTAGCCCATCTGTGCCACTGCAAGAGTCTGCTCTTGTATTTCTTTCCCTCCCC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000048162.10 |
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| 3UTR TCA 90 bp | AGCACACCCCTTCAAGAACAGAGGGCTGAGGAGAAGCTGGCCTGGTaGTGGACTGTGAGTACTCATCTCTGCTCATTACTTCATGTAGCT | + |
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Preference number: 1 (lower is better) Translates to: STPLQEQRAEEKLAW*WTVSTHLCSLLHVA Trigger: AGCTACATGAAGTAATGAGCAGAGATGAGTACTCACAGTCCATCACCAGGCCAGCTTCTCCTCAGCCCTCTGTTCTTGAAGGGGTGTGCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048162.10 |
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| 3UTR CCA 90 bp | TCCCTTCTCGGGGAGGGAAAGAAATACAAGAGCAGACTCTTGCAGTaGCACAGATGGGCTAAGGACTTGGGTGCATCTGACATAAAAGCC | + |
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Preference number: 1 (lower is better) Translates to: SLLGEGKKYKSRLLQ*HRWAKDLGASDIKA Trigger: GGCTTTTATGTCAGATGCACCCAAGTCCTTAGCCCATCTGTGCCACTGCAAGAGTCTGCTCTTGTATTTCTTTCCCTCCCCGAGAAGGGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000048162.10 |
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| 3UTR-3UTR TCA 90 bp | TGGATGCCCCAGCACACAGCATCACCAGGGCAGCATCCGCGCAGCACCAGATCTACACACCGGAGGGCCTaGAAGTGGCTCCCTCCCTTC | + |
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Preference number: 2 (lower is better) Translates to: WMPQHTASPGQHPRSTRSTHRRA*KWLPPF Trigger: GAAGGGAGGGAGCCACTTTCAGGCCCTCCGGTGTGT...AGATCTGGTGCTGCGCGGATGCTGCCCTGGTGATGCTGTGTGCTGGGGCATCCA 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048162.10 |
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| 3UTR-3UTR CCA 90 bp | TTGTCTCAGGGTAAGAGCCCCAGGCTGACTGTCTTCAGGAAGGAGGGCCTCTGCGGGATGTGCCGAGGGTaGGGGAGCTGCTTGCTCTGG | + |
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Preference number: 2 (lower is better) Translates to: LSQGKSPRLTVFRKEGLCGMCRG*GSCLLW Trigger: CCAGAGCAAGCAGCTCCCCCACCCTCGGCACATCCC...GCAGAGGCCCTCCTTCCTGAAGACAGTCAGCCTGGGGCTCTTACCCTGAGACAA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000048162.10 |
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| 3UTR-3UTR GCA 90 bp | CAGCACACAGCATCACCAGGGCAGCATCCGCGCAGCACCAGATCTTCATGCGGCAGGAAGGAGGGCCTCTaGAGGAGACAGGAGTCTCAG | + |
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Preference number: 2 (lower is better) Translates to: QHTASPGQHPRSTRSSCGRKEGL*RRQESQ Trigger: CTGAGACTCCTGTCTCCTGCAGAGGCCCTCCTTCCT...GCCGCATGAAGATCTGGTGCTGCGCGGATGCTGCCCTGGTGATGCTGTGTGCTG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048162.10 |
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| 3UTR-3UTR CCA 90 bp | ATCTTCATGCGGCCCTCATTGTCTCAGGGTAAGAGCCCCAGGCTGACTGTCTTCAGCGAGCGAGGGAGGTaGGATGTGCCGAGGGTGGGG | + |
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Preference number: 2 (lower is better) Translates to: IFMRPSLSQGKSPRLTVFSERGR*DVPRVG Trigger: CCCCACCCTCGGCACATCCCACCTCCCTCGCTCGCT...GAAGACAGTCAGCCTGGGGCTCTTACCCTGAGACAATGAGGGCCGCATGAAGAT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048162.10 |
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| 3UTR CAA 90 bp | ACCAGGGCAGCATCCGCGCAGCACCAGATCTTCATGCGGCCCTCATaGTCTCAGGGTAAGAGCCCCAGGCTGACTGTCTTCAGGAAGGAG | + |
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Preference number: 2 (lower is better) Translates to: TRAASAQHQIFMRPS*SQGKSPRLTVFRKE Trigger: CTCCTTCCTGAAGACAGTCAGCCTGGGGCTCTTACCCTGAGACAATGAGGGCCGCATGAAGATCTGGTGCTGCGCGGATGCTGCCCTGGT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048162.10 |
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| 3UTR-3UTR GCA 90 bp | CAGCACACAGCATCACCAGGGCAGCATCCGCGCAGCACCAGATCTTCATGCGGCGAGTCTCAGGATGCTTaGCCCAGCACACCCCTTCAA | + |
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Preference number: 2 (lower is better) Translates to: QHTASPGQHPRSTRSSCGESQDA*PSTPLQ Trigger: TTGAAGGGGTGTGCTGGGGCAAGCATCCTGAGACTC...GCCGCATGAAGATCTGGTGCTGCGCGGATGCTGCCCTGGTGATGCTGTGTGCTG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048162.10 |
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| 3UTR-3UTR GCA 90 bp | ACCAGTGCTTCGGCTCTTGTCTCTGCAGGAGACAGCTACCCCTCGAGGTCTCCCACAATAGCAGGGAAATaGAGGCTCTCCGGTGATGGG | + |
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Preference number: 2 (lower is better) Translates to: TSASALVSAGDSYPSRSPTIAGK*RLSGDG Trigger: CCCATCACCGGAGAGCCTGCATTTCCCTGCTATTGT...GGGAGACCTCGAGGGGTAGCTGTCTCCTGCAGAGACAAGAGCCGAAGCACTGGT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048162.10 |
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| 3UTR-3UTR TCA 90 bp | CCTTTAAATGAGTCACTGGTGGATGCCCCAGCACACAGCATCACCAGGGCAGCATCAAGAACAGAGGGCTaGGGAGAAGCTGGCCTGGTG | + |
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Preference number: 2 (lower is better) Translates to: PLNESLVDAPAHSITRAASRTEG*GEAGLV Trigger: CACCAGGCCAGCTTCTCCTCAGCCCTCTGTTCTTGA...TGCTGCCCTGGTGATGCTGTGTGCTGGGGCATCCACCAGTGACTCATTTAAAGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048162.10 |
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| 3UTR-3UTR GCA 90 bp | TGCCCCAGCACACAGCATCACCAGGGCAGCATCCGCGCAGCACCAGATCTTCATACAAGAGCAGACTCTTaGAGTGGCACAGATGGGCTA | + |
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Preference number: 2 (lower is better) Translates to: CPSTQHHQGSIRAAPDLHTRADS*SGTDGL Trigger: TAGCCCATCTGTGCCACTGCAAGAGTCTGCTCTTGT...ATGAAGATCTGGTGCTGCGCGGATGCTGCCCTGGTGATGCTGTGTGCTGGGGCA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048162.10 |
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| 3UTR-3UTR CCA 90 bp | TTGTCTCAGGGTAAGAGCCCCAGGCTGACTGTCTTCAGGAAGGAGGGCCTCTGCATATGTACCAAGTTCTaGATGGCGGAGGCCATTGGG | + |
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Preference number: 2 (lower is better) Translates to: LSQGKSPRLTVFRKEGLCICTKF*MAEAIG Trigger: CCCAATGGCCTCCGCCATCCAGAACTTGGTACATAT...GCAGAGGCCCTCCTTCCTGAAGACAGTCAGCCTGGGGCTCTTACCCTGAGACAA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048162.10 |
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| 3UTR-3UTR CCA 90 bp | CCTTTAAATGAGTCACTGGTGGATGCCCCAGCACACAGCATCACCAGGGCAGCACAAGGGCAGGTGGCATaGCCTTTCTTGCTGGCTTAC | + |
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Preference number: 2 (lower is better) Translates to: PLNESLVDAPAHSITRAAQGQVA*PFLLAY Trigger: GTAAGCCAGCAAGAAAGGCCATGCCACCTGCCCTTG...TGCTGCCCTGGTGATGCTGTGTGCTGGGGCATCCACCAGTGACTCATTTAAAGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048162.10 |
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| 3UTR-3UTR TCA 90 bp | GGCTTACTAGCTTATGGGGTAGTACGTGTCGTCTTCAATGAGACCAGTGCTTCGGGCTCTTTCAAGGTGTaGGCAGAGGGCCAGCAGGGA | + |
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Preference number: 2 (lower is better) Translates to: GLLAYGVVRVVFNETSASGSFKV*AEGQQG Trigger: TCCCTGCTGGCCCTCTGCTCACACCTTGAAAGAGCC...CGAAGCACTGGTCTCATTGAAGACGACACGTACTACCCCATAAGCTAGTAAGCC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048162.10 |
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| 3UTR-3UTR TCA 90 bp | TGCCCCAGCACACAGCATCACCAGGGCAGCATCCGCGCAGCACCAGATCTTCATCACATTTCCCAGAGATaGGTGTCTCTTTCTCATTGG | + |
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Preference number: 2 (lower is better) Translates to: CPSTQHHQGSIRAAPDLHHISQR*VSLSHW Trigger: CCAATGAGAAAGAGACACTCATCTCTGGGAAATGTG...ATGAAGATCTGGTGCTGCGCGGATGCTGCCCTGGTGATGCTGTGTGCTGGGGCA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048162.10 |
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| 3UTR CAA 90 bp | GCTCCCTCCCTTCTCGGGGAGGGAAAGAAATACAAGAGCAGACTCTaGCAGTGGCACAGATGGGCTAAGGACTTGGGTGCATCTGACATA | + |
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Preference number: 2 (lower is better) Translates to: APSLLGEGKKYKSRL*QWHRWAKDLGASDI Trigger: TATGTCAGATGCACCCAAGTCCTTAGCCCATCTGTGCCACTGCAAGAGTCTGCTCTTGTATTTCTTTCCCTCCCCGAGAAGGGAGGGAGC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048162.10 |
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| 3UTR-3UTR GCA 90 bp | CTCTTGCAGTGGCACAGATGGGCTAAGGACTTGGGTGCATCTGACATAAAAGCCTTCGGCTCTTGTCTCTaGAGGAGACAGCTACCCCTC | + |
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Preference number: 2 (lower is better) Translates to: LLQWHRWAKDLGASDIKAFGSCL*RRQLPL Trigger: GAGGGGTAGCTGTCTCCTGCAGAGACAAGAGCCGAA...GGCTTTTATGTCAGATGCACCCAAGTCCTTAGCCCATCTGTGCCACTGCAAGAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000048162.10 |
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| 3UTR-3UTR GCA 90 bp | ATCTTCATGCGGCCCTCATTGTCTCAGGGTAAGAGCCCCAGGCTGACTGTCTTCGGTCAGGAACGAAAATaGTGTTCACTGTTCCTGTGT | + |
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Preference number: 2 (lower is better) Translates to: IFMRPSLSQGKSPRLTVFGQERK*CSLFLC Trigger: ACACAGGAACAGTGAACAGCATTTTCGTTCCTGACC...GAAGACAGTCAGCCTGGGGCTCTTACCCTGAGACAATGAGGGCCGCATGAAGAT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000048162.10 |
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| 3UTR CAA 90 bp | AAATACAAGAGCAGACTCTTGCAGTGGCACAGATGGGCTAAGGACTaGGGTGCATCTGACATAAAAGCCCTGGGAAGGTGTAGGGATATC | + |
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Preference number: 2 (lower is better) Translates to: KYKSRLLQWHRWAKD*GASDIKALGRCRDI Trigger: GATATCCCTACACCTTCCCAGGGCTTTTATGTCAGATGCACCCAAGTCCTTAGCCCATCTGTGCCACTGCAAGAGTCTGCTCTTGTATTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048162.10 |
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| 3UTR CAA 90 bp | GAGTGTCTCTTTCTCATTGGGTCAGAGATGAGTGCCTCTTTCTCATaGGGTCAGGAACGAAAATGCTGTTCACTGTTCCTGTGTAGTCAA | + |
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Preference number: 2 (lower is better) Translates to: ECLFLIGSEMSASFS*GQERKCCSLFLCSQ Trigger: TTGACTACACAGGAACAGTGAACAGCATTTTCGTTCCTGACCCAATGAGAAAGAGGCACTCATCTCTGACCCAATGAGAAAGAGACACTC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048162.10 |
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| 3UTR TCA 72 bp | TGCGGCCCTCATTGTCTCAGGGTAAGAGCCCCAGGCTaGCTGTCTTCAGGAAGGAGGGCCTCTGCAGGAGAC | + |
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Preference number: 3 (lower is better) Translates to: CGPHCLRVRAPG*LSSGRRASAGD Trigger: GTCTCCTGCAGAGGCCCTCCTTCCTGAAGACAGTCAGCCTGGGGCTCTTACCCTGAGACAATGAGGGCCGCA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048162.10 |
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| 3UTR GCA 72 bp | GAAGGAGGGCCTCTGCAGGAGACAGGAGTCTCAGGATaGTTGCCCCAGCACACCCCTTCAAGAACAGAGGGC | + |
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Preference number: 3 (lower is better) Translates to: EGGPLQETGVSG*LPQHTPSRTEG Trigger: GCCCTCTGTTCTTGAAGGGGTGTGCTGGGGCAAGCATCCTGAGACTCCTGTCTCCTGCAGAGGCCCTCCTTC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000048162.10 |
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| 3UTR TCA 72 bp | GAGCAGTTATCCTACCAGGCAACACACCGGAGGGCCTaGAAGTGGCTCCCTCCCTTCTCGGGGAGGGAAAGA | + |
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Preference number: 3 (lower is better) Translates to: EQLSYQATHRRA*KWLPPFSGRER Trigger: TCTTTCCCTCCCCGAGAAGGGAGGGAGCCACTTTCAGGCCCTCCGGTGTGTTGCCTGGTAGGATAACTGCTC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048162.10 |
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| 3UTR GCA 72 bp | GGTCTCCCAGTAGGAATCCCTACAATAGCAGGGAAATaGAGGCTCTCCGGTGATGGGGTACGGGGTCCTCCC | + |
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Preference number: 3 (lower is better) Translates to: GLPVGIPTIAGK*RLSGDGVRGPP Trigger: GGGAGGACCCCGTACCCCATCACCGGAGAGCCTGCATTTCCCTGCTATTGTAGGGATTCCTACTGGGAGACC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000048162.10 |
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| 3UTR TCA 72 bp | TGCTTGCCCCAGCACACCCCTTCAAGAACAGAGGGCTaGGGAGAAGCTGGCCTGGTGATGGACTGTGAGTAC | + |
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Preference number: 3 (lower is better) Translates to: CLPQHTPSRTEG*GEAGLVMDCEY Trigger: GTACTCACAGTCCATCACCAGGCCAGCTTCTCCTCAGCCCTCTGTTCTTGAAGGGGTGTGCTGGGGCAAGCA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000048162.10 |
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| 3UTR-3UTR CAA 90 bp | TTGTCTCAGGGTAAGAGCCCCAGGCTGACTGTCTTCAGGAAGGAGGGCCTCTGCTACAAGAGCAGACTCTaGCAGTGGCACAGATGGGCT | + |
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Preference number: 3 (lower is better) Translates to: LSQGKSPRLTVFRKEGLCYKSRL*QWHRWA Trigger: AGCCCATCTGTGCCACTGCAAGAGTCTGCTCTTGTA...GCAGAGGCCCTCCTTCCTGAAGACAGTCAGCCTGGGGCTCTTACCCTGAGACAA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048162.10 |
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| 3UTR GCA 72 bp | TCCTGTGTAGTCAAGGGCAGGTGGCATGGCCTTTCTTaGTGGCTTACTAGCTTATGGGGTAGTACGTGTCGT | + |
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Preference number: 3 (lower is better) Translates to: SCVVKGRWHGLS*WLTSLWGSTCR Trigger: ACGACACGTACTACCCCATAAGCTAGTAAGCCAGCAAGAAAGGCCATGCCACCTGCCCTTGACTACACAGGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048162.10 |
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| 3UTR GCA 72 bp | TTTGTCCACCCTACCCCCTTCACTGAAGGTTTGCAGTaGCTACAATTCACAGCAACCCTGACCAAGCCCCTT | + |
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Preference number: 3 (lower is better) Translates to: FVHPTPFTEGLQ*LQFTATLTKPL Trigger: AAGGGGCTTGGTCAGGGTTGCTGTGAATTGTAGGCACTGCAAACCTTCAGTGAAGGGGGTAGGGTGGACAAA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000048162.10 |
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| 3UTR CCA 72 bp | GAAGCCCGTAGGACCTTCCCAAGAACAGGAAATGGTTaGGATGGAGATTCCAGAGAGGCACATTTCCCAGAG | + |
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Preference number: 3 (lower is better) Translates to: EARRTFPRTGNG*DGDSREAHFPE Trigger: CTCTGGGAAATGTGCCTCTCTGGAATCTCCATCCCAACCATTTCCTGTTCTTGGGAAGGTCCTACGGGCTTC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048162.10 |
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| 3UTR CCA 72 bp | GGGGAGGGAAAGAAATACAAGAGCAGACTCTTGCAGTaGCACAGATGGGCTAAGGACTTGGGTGCATCTGAC | + |
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Preference number: 3 (lower is better) Translates to: GEGKKYKSRLLQ*HRWAKDLGASD Trigger: GTCAGATGCACCCAAGTCCTTAGCCCATCTGTGCCACTGCAAGAGTCTGCTCTTGTATTTCTTTCCCTCCCC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048162.10 |
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| 3UTR-3UTR CAA 90 bp | GCCCCAGCACACCCCTTCAAGAACAGAGGGCTGAGGAGAAGCTGGCCTGGTGATCTTCTGGATCTGTATTaGAAAAGGCTCTTTCAAGGT | + |
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Preference number: 3 (lower is better) Translates to: APAHPFKNRGLRRSWPGDLLDLY*KRLFQG Trigger: ACCTTGAAAGAGCCTTTTCAAATACAGATCCAGAAG...ATCACCAGGCCAGCTTCTCCTCAGCCCTCTGTTCTTGAAGGGGTGTGCTGGGGC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000048162.10 |
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| 3UTR-3UTR CAA 90 bp | CCTTTAAATGAGTCACTGGTGGATGCCCCAGCACACAGCATCACCAGGGCAGCAAAGAACAGGAAATGGTaGGGATGGAGATTCCAGAGA | + |
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Preference number: 3 (lower is better) Translates to: PLNESLVDAPAHSITRAAKNRKW*GWRFQR Trigger: TCTCTGGAATCTCCATCCCAACCATTTCCTGTTCTT...TGCTGCCCTGGTGATGCTGTGTGCTGGGGCATCCACCAGTGACTCATTTAAAGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048162.10 |
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| 3UTR CCA 72 bp | TGTGTAGTCAAGGGCAGGTGGCATGGCCTTTCTTGCTaGCTTACTAGCTTATGGGGTAGTACGTGTCGTCTT | + |
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Preference number: 3 (lower is better) Translates to: CVVKGRWHGLSC*LTSLWGSTCRL Trigger: AAGACGACACGTACTACCCCATAAGCTAGTAAGCCAGCAAGAAAGGCCATGCCACCTGCCCTTGACTACACA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048162.10 |
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| 3UTR TCA 72 bp | GGGATGGAGATTCCAGAGAGGCACATTTCCCAGAGATaGGTGTCTCTTTCTCATTGGGTCAGAGATGAGTGC | + |
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Preference number: 3 (lower is better) Translates to: GMEIPERHISQR*VSLSHWVRDEC Trigger: GCACTCATCTCTGACCCAATGAGAAAGAGACACTCATCTCTGGGAAATGTGCCTCTCTGGAATCTCCATCCC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048162.10 |
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| 3UTR TCA 72 bp | CTTCAAGAACAGAGGGCTGAGGAGAAGCTGGCCTGGTaGTGGACTGTGAGTACTCATCTCTGCTCATTACTT | + |
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Preference number: 3 (lower is better) Translates to: LQEQRAEEKLAW*WTVSTHLCSLL Trigger: AAGTAATGAGCAGAGATGAGTACTCACAGTCCATCACCAGGCCAGCTTCTCCTCAGCCCTCTGTTCTTGAAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048162.10 |
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| 3UTR CCA 72 bp | ATAAAAGCCCTGGGAAGGTGTAGGGATATCCCGGCGTaGGTTAGAGGTGAGTCAAGGTGTGGTCTTAAGATT | + |
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Preference number: 3 (lower is better) Translates to: IKALGRCRDIPA*VRGESRCGLKI Trigger: AATCTTAAGACCACACCTTGACTCACCTCTAACCCACGCCGGGATATCCCTACACCTTCCCAGGGCTTTTAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048162.10 |
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| 3UTR CCA 72 bp | AAGAAATACAAGAGCAGACTCTTGCAGTGGCACAGATaGGCTAAGGACTTGGGTGCATCTGACATAAAAGCC | + |
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Preference number: 3 (lower is better) Translates to: KKYKSRLLQWHR*AKDLGASDIKA Trigger: GGCTTTTATGTCAGATGCACCCAAGTCCTTAGCCCATCTGTGCCACTGCAAGAGTCTGCTCTTGTATTTCTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048162.10 |
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| CDS-3UTR CCA 90 bp | TGGATGCCCCAGCACACAGCATCACCAGGGCAGCATCCGCGCAGCACCAGATCTTGGCTGTGGCTGCTATaGTGCAGGCCGTGTCATGCT | + |
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Preference number: 4 (lower is better) Translates to: WMPQHTASPGQHPRSTRSWLWLL*CRPCHA Trigger: AGCATGACACGGCCTGCACCATAGCAGCCACAGCCA...AGATCTGGTGCTGCGCGGATGCTGCCCTGGTGATGCTGTGTGCTGGGGCATCCA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048162.10 |
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| CDS-3UTR CCA 90 bp | GCCCCAGCACACCCCTTCAAGAACAGAGGGCTGAGGAGAAGCTGGCCTGGTGATCTCTACTCTGGCTGGTaGCCTGGGTTCTGGGCCACT | + |
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Preference number: 4 (lower is better) Translates to: APAHPFKNRGLRRSWPGDLYSGW*PGFWAT Trigger: AGTGGCCCAGAACCCAGGCCACCAGCCAGAGTAGAG...ATCACCAGGCCAGCTTCTCCTCAGCCCTCTGTTCTTGAAGGGGTGTGCTGGGGC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000048162.10 |
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| CDS-3UTR GCA 90 bp | TGCCCCAGCACACAGCATCACCAGGGCAGCATCCGCGCAGCACCAGATCTTCATGGGAGATGCTCTCACTaGTCTCAGATGGGGTGGCCT | + |
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Preference number: 4 (lower is better) Translates to: CPSTQHHQGSIRAAPDLHGRCSH*SQMGWP Trigger: AGGCCACCCCATCTGAGAGCAGTGAGAGCATCTCCC...ATGAAGATCTGGTGCTGCGCGGATGCTGCCCTGGTGATGCTGTGTGCTGGGGCA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000048162.10 |
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| CDS-3UTR CCA 90 bp | TCTCTGCAGGAGACAGCTACCCCTCGAGGTCTCCCAGTAGGAATCCCTACAATATGGTGGCCTGGGTTCTaGGCCACTGGCTCGGCCTGC | + |
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Preference number: 4 (lower is better) Translates to: SLQETATPRGLPVGIPTIWWPGF*ATGSAC Trigger: GCAGGCCGAGCCAGTGGCCCAGAACCCAGGCCACCA...TATTGTAGGGATTCCTACTGGGAGACCTCGAGGGGTAGCTGTCTCCTGCAGAGA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048162.10 |
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| CDS-3UTR CCA 90 bp | CCTTTAAATGAGTCACTGGTGGATGCCCCAGCACACAGCATCACCAGGGCAGCACTCTGGCTGGTGGCCTaGGTTCTGGGCCACTGGCTC | + |
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Preference number: 4 (lower is better) Translates to: PLNESLVDAPAHSITRAALWLVA*VLGHWL Trigger: GAGCCAGTGGCCCAGAACCCAGGCCACCAGCCAGAG...TGCTGCCCTGGTGATGCTGTGTGCTGGGGCATCCACCAGTGACTCATTTAAAGG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048162.10 |
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| 3UTR CAA 72 bp | GCATCCGCGCAGCACCAGATCTTCATGCGGCCCTCATaGTCTCAGGGTAAGAGCCCCAGGCTGACTGTCTTC | + |
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Preference number: 4 (lower is better) Translates to: ASAQHQIFMRPS*SQGKSPRLTVF Trigger: GAAGACAGTCAGCCTGGGGCTCTTACCCTGAGACAATGAGGGCCGCATGAAGATCTGGTGCTGCGCGGATGC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048162.10 |
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| CDS-3UTR CCA 90 bp | TGCCCCAGCACACAGCATCACCAGGGCAGCATCCGCGCAGCACCAGATCTTCATCTGCTGGAACCATCTTaGTGTAGAGGGCTCGGATGG | + |
|
Preference number: 4 (lower is better) Translates to: CPSTQHHQGSIRAAPDLHLLEPS*CRGLGW Trigger: CCATCCGAGCCCTCTACACCAAGATGGTTCCAGCAG...ATGAAGATCTGGTGCTGCGCGGATGCTGCCCTGGTGATGCTGTGTGCTGGGGCA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048162.10 |
||
| CDS-3UTR TCA 90 bp | TGCCCCAGCACACAGCATCACCAGGGCAGCATCCGCGCAGCACCAGATCTTCATCAGGCCGTGTCATGCTaGACCACCTGGGTAAATTCT | + |
|
Preference number: 4 (lower is better) Translates to: CPSTQHHQGSIRAAPDLHQAVSC*TTWVNS Trigger: AGAATTTACCCAGGTGGTTCAGCATGACACGGCCTG...ATGAAGATCTGGTGCTGCGCGGATGCTGCCCTGGTGATGCTGTGTGCTGGGGCA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048162.10 |
||
| CDS-3UTR CCA 90 bp | TGGATGCCCCAGCACACAGCATCACCAGGGCAGCATCCGCGCAGCACCAGATCTGTCGATGGTTTTGTCTaGAGAGGGGGCAAAGGTATC | + |
|
Preference number: 4 (lower is better) Translates to: WMPQHTASPGQHPRSTRSVDGFV*RGGKGI Trigger: GATACCTTTGCCCCCTCTCCAGACAAAACCATCGAC...AGATCTGGTGCTGCGCGGATGCTGCCCTGGTGATGCTGTGTGCTGGGGCATCCA 58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000048162.10 |
||
| CDS-3UTR CCA 90 bp | TGCCCCAGCACACAGCATCACCAGGGCAGCATCCGCGCAGCACCAGATCTTCATACACTCTTAAGTCTGTaGGCACCTCCTCTCTCAGGG | + |
|
Preference number: 4 (lower is better) Translates to: CPSTQHHQGSIRAAPDLHTLLSL*APPLSG Trigger: CCCTGAGAGAGGAGGTGCCCACAGACTTAAGAGTGT...ATGAAGATCTGGTGCTGCGCGGATGCTGCCCTGGTGATGCTGTGTGCTGGGGCA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048162.10 |
||
| CDS-3UTR TCA 90 bp | TTGTCTCAGGGTAAGAGCCCCAGGCTGACTGTCTTCAGGAAGGAGGGCCTCTGCGCCTACAAGGAGCTCTaGGATCTCCCCTTTCTTCTC | + |
|
Preference number: 4 (lower is better) Translates to: LSQGKSPRLTVFRKEGLCAYKEL*DLPFLL Trigger: GAGAAGAAAGGGGAGATCTCAGAGCTCCTTGTAGGC...GCAGAGGCCCTCCTTCCTGAAGACAGTCAGCCTGGGGCTCTTACCCTGAGACAA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000048162.10 |
||
| CDS-3UTR GCA 90 bp | CGAGGTCTCCCAGTAGGAATCCCTACAATAGCAGGGAAATGCAGGCTCTCCGGTCTCGGATGGAGGGGCTaGCTACAAGGAGCTCTGAGA | + |
|
Preference number: 4 (lower is better) Translates to: RGLPVGIPTIAGKCRLSGLGWRG*LQGALR Trigger: TCTCAGAGCTCCTTGTAGGCAGCCCCTCCATCCGAG...ACCGGAGAGCCTGCATTTCCCTGCTATTGTAGGGATTCCTACTGGGAGACCTCG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048162.10 |
||
| CDS-3UTR GCA 90 bp | TACGTGTCGTCTTCAATGAGACCAGTGCTTCGGCTCTTGTCTCTGCAGGAGACAAGATGGGGTGGCCTCTaGAGGGGGCTCCACTGGAGT | + |
|
Preference number: 4 (lower is better) Translates to: YVSSSMRPVLRLLSLQETRWGGL*RGLHWS Trigger: ACTCCAGTGGAGCCCCCTGCAGAGGCCACCCCATCT...TGTCTCCTGCAGAGACAAGAGCCGAAGCACTGGTCTCATTGAAGACGACACGTA 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000048162.10 |
||
| CDS-3UTR CCA 90 bp | CCTTTAAATGAGTCACTGGTGGATGCCCCAGCACACAGCATCACCAGGGCAGCACTTGGTGCCGTCATATaGCTCAGCTGTGCCAGAGGG | + |
|
Preference number: 4 (lower is better) Translates to: PLNESLVDAPAHSITRAALGAVI*LSCARG Trigger: CCCTCTGGCACAGCTGAGCCATATGACGGCACCAAG...TGCTGCCCTGGTGATGCTGTGTGCTGGGGCATCCACCAGTGACTCATTTAAAGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048162.10 |
||
| CDS-3UTR CCA 90 bp | ACCAGTGCTTCGGCTCTTGTCTCTGCAGGAGACAGCTACCCCTCGAGGTCTCCCTGCCAGAATTCCGAATaGGAAACAGCTGCTGGAACC | + |
|
Preference number: 4 (lower is better) Translates to: TSASALVSAGDSYPSRSPCQNSE*ETAAGT Trigger: GGTTCCAGCAGCTGTTTCCCATTCGGAATTCTGGCA...GGGAGACCTCGAGGGGTAGCTGTCTCCTGCAGAGACAAGAGCCGAAGCACTGGT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048162.10 |
||
| CDS-3UTR TCA 90 bp | CGAGGTCTCCCAGTAGGAATCCCTACAATAGCAGGGAAATGCAGGCTCTCCGGTCCGTGGACTTCTCTTTaGCTGCCTGGTAGCTCTGCT | + |
|
Preference number: 4 (lower is better) Translates to: RGLPVGIPTIAGKCRLSGPWTSL*LPGSSA Trigger: AGCAGAGCTACCAGGCAGTCAAAGAGAAGTCCACGG...ACCGGAGAGCCTGCATTTCCCTGCTATTGTAGGGATTCCTACTGGGAGACCTCG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048162.10 |
||
| CDS-3UTR GCA 90 bp | CTCTTGCAGTGGCACAGATGGGCTAAGGACTTGGGTGCATCTGACATAAAAGCCCACACTGGCTGTGGCTaGTATGGTGCAGGCCGTGTC | + |
|
Preference number: 4 (lower is better) Translates to: LLQWHRWAKDLGASDIKAHTGCG*YGAGRV Trigger: GACACGGCCTGCACCATAGCAGCCACAGCCAGTGTG...GGCTTTTATGTCAGATGCACCCAAGTCCTTAGCCCATCTGTGCCACTGCAAGAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048162.10 |
||
| CDS-3UTR CCA 90 bp | TCTCTGCAGGAGACAGCTACCCCTCGAGGTCTCCCAGTAGGAATCCCTACAATATGTAGAGGGCTCGGATaGAGGGGCTGCCTACAAGGA | + |
|
Preference number: 4 (lower is better) Translates to: SLQETATPRGLPVGIPTICRGLG*RGCLQG Trigger: TCCTTGTAGGCAGCCCCTCCATCCGAGCCCTCTACA...TATTGTAGGGATTCCTACTGGGAGACCTCGAGGGGTAGCTGTCTCCTGCAGAGA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000048162.10 |
||
| CDS-3UTR CCA 90 bp | CCTTTAAATGAGTCACTGGTGGATGCCCCAGCACACAGCATCACCAGGGCAGCATCCTCACAAGGGCTTTaGGGGGCAGGCTCATCTTCA | + |
|
Preference number: 4 (lower is better) Translates to: PLNESLVDAPAHSITRAASSQGL*GAGSSS Trigger: TGAAGATGAGCCTGCCCCCCAAAGCCCTTGTGAGGA...TGCTGCCCTGGTGATGCTGTGTGCTGGGGCATCCACCAGTGACTCATTTAAAGG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000048162.10 |
||
| 3UTR CAA 72 bp | TACGTGTCGTCTTCAATGAGACCAGTGCTTCGGCTCTaGTCTCTGCAGGAGACAGCTACCCCTCGAGGTCTC | + |
|
Preference number: 4 (lower is better) Translates to: YVSSSMRPVLRL*SLQETATPRGL Trigger: GAGACCTCGAGGGGTAGCTGTCTCCTGCAGAGACAAGAGCCGAAGCACTGGTCTCATTGAAGACGACACGTA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048162.10 |
||
| CDS-3UTR TCA 90 bp | TTGTCTCAGGGTAAGAGCCCCAGGCTGACTGTCTTCAGGAAGGAGGGCCTCTGCAGACTTCCCACTATCTaGGTTCAGCTCGAACACTCT | + |
|
Preference number: 4 (lower is better) Translates to: LSQGKSPRLTVFRKEGLCRLPTI*VQLEHS Trigger: AGAGTGTTCGAGCTGAACTCAGATAGTGGGAAGTCT...GCAGAGGCCCTCCTTCCTGAAGACAGTCAGCCTGGGGCTCTTACCCTGAGACAA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048162.10 |
||
| CDS-3UTR TCA 90 bp | TACGTGTCGTCTTCAATGAGACCAGTGCTTCGGCTCTTGTCTCTGCAGGAGACATCTCCCAGTCCTCGCTaGTGTCCGTGCTTGAGCCTT | + |
|
Preference number: 4 (lower is better) Translates to: YVSSSMRPVLRLLSLQETSPSPR*CPCLSL Trigger: AAGGCTCAAGCACGGACATCAGCGAGGACTGGGAGA...TGTCTCCTGCAGAGACAAGAGCCGAAGCACTGGTCTCATTGAAGACGACACGTA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048162.10 |
||
| CDS-3UTR GCA 90 bp | CCTTTAAATGAGTCACTGGTGGATGCCCCAGCACACAGCATCACCAGGGCAGCACATATGGCTCAGCTGTaGCAGAGGGTGTACCCATCA | + |
|
Preference number: 4 (lower is better) Translates to: PLNESLVDAPAHSITRAAHMAQL*QRVYPS Trigger: TGATGGGTACACCCTCTGGCACAGCTGAGCCATATG...TGCTGCCCTGGTGATGCTGTGTGCTGGGGCATCCACCAGTGACTCATTTAAAGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048162.10 |
||
| CDS-3UTR CCA 90 bp | TTGTCTCAGGGTAAGAGCCCCAGGCTGACTGTCTTCAGGAAGGAGGGCCTCTGCATGGGAAACAGCTGCTaGAACCATCTTGGTGTAGAG | + |
|
Preference number: 4 (lower is better) Translates to: LSQGKSPRLTVFRKEGLCMGNSC*NHLGVE Trigger: CTCTACACCAAGATGGTTCCAGCAGCTGTTTCCCAT...GCAGAGGCCCTCCTTCCTGAAGACAGTCAGCCTGGGGCTCTTACCCTGAGACAA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048162.10 |
||
| CDS-3UTR GCA 90 bp | TACGTGTCGTCTTCAATGAGACCAGTGCTTCGGCTCTTGTCTCTGCAGGAGACACTGTGGCTGCTATGGTaGAGGCCGTGTCATGCTGAA | + |
|
Preference number: 4 (lower is better) Translates to: YVSSSMRPVLRLLSLQETLWLLW*RPCHAE Trigger: TTCAGCATGACACGGCCTGCACCATAGCAGCCACAG...TGTCTCCTGCAGAGACAAGAGCCGAAGCACTGGTCTCATTGAAGACGACACGTA 53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048162.10 |
||
| CDS-3UTR GCA 90 bp | GCCCCAGCACACCCCTTCAAGAACAGAGGGCTGAGGAGAAGCTGGCCTGGTGATTTGGAGATGGTACAATaGCTTCAAGCTCCTCTTCTT | + |
|
Preference number: 4 (lower is better) Translates to: APAHPFKNRGLRRSWPGDLEMVQ*LQAPLL Trigger: AAGAAGAGGAGCTTGAAGGCATTGTACCATCTCCAA...ATCACCAGGCCAGCTTCTCCTCAGCCCTCTGTTCTTGAAGGGGTGTGCTGGGGC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000048162.10 |
||
| 3UTR CAA 72 bp | AGCAGACTCTTGCAGTGGCACAGATGGGCTAAGGACTaGGGTGCATCTGACATAAAAGCCCTGGGAAGGTGT | + |
|
Preference number: 4 (lower is better) Translates to: SRLLQWHRWAKD*GASDIKALGRC Trigger: ACACCTTCCCAGGGCTTTTATGTCAGATGCACCCAAGTCCTTAGCCCATCTGTGCCACTGCAAGAGTCTGCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048162.10 |
||
| 3UTR CAA 72 bp | CTTCTCGGGGAGGGAAAGAAATACAAGAGCAGACTCTaGCAGTGGCACAGATGGGCTAAGGACTTGGGTGCA | + |
|
Preference number: 4 (lower is better) Translates to: LLGEGKKYKSRL*QWHRWAKDLGA Trigger: TGCACCCAAGTCCTTAGCCCATCTGTGCCACTGCAAGAGTCTGCTCTTGTATTTCTTTCCCTCCCCGAGAAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048162.10 |
||
| CDS-3UTR TCA 90 bp | TACGTGTCGTCTTCAATGAGACCAGTGCTTCGGCTCTTGTCTCTGCAGGAGACATTTTTCTGTTGCTCCTaGGGAGCCTTCAGTGGCCAG | + |
|
Preference number: 4 (lower is better) Translates to: YVSSSMRPVLRLLSLQETFFCCS*GAFSGQ Trigger: CTGGCCACTGAAGGCTCCTCAGGAGCAACAGAAAAA...TGTCTCCTGCAGAGACAAGAGCCGAAGCACTGGTCTCATTGAAGACGACACGTA 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000048162.10 |
||
| CDS-3UTR GCA 90 bp | GGCTTACTAGCTTATGGGGTAGTACGTGTCGTCTTCAATGAGACCAGTGCTTCGAGAGATACTCTGGTCTaGCCGCTGCTTCAGGGCATC | + |
|
Preference number: 4 (lower is better) Translates to: GLLAYGVVRVVFNETSASRDTLV*PLLQGI Trigger: GATGCCCTGAAGCAGCGGGCAGACCAGAGTATCTCT...CGAAGCACTGGTCTCATTGAAGACGACACGTACTACCCCATAAGCTAGTAAGCC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048162.10 |
||
| CDS-3UTR TCA 90 bp | CAAGAACAGGAAATGGTTGGGATGGAGATTCCAGAGAGGCACATTTCCCAGAGATCAGGTCCCGCTTCATaGACTCCAAAGCTTCCGTGG | + |
|
Preference number: 4 (lower is better) Translates to: QEQEMVGMEIPERHISQRSGPAS*TPKLPW Trigger: CCACGGAAGCTTTGGAGTTCATGAAGCGGGACCTGA...TCTCTGGGAAATGTGCCTCTCTGGAATCTCCATCCCAACCATTTCCTGTTCTTG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048162.10 |
||
| CDS-3UTR TCA 90 bp | TACGTGTCGTCTTCAATGAGACCAGTGCTTCGGCTCTTGTCTCTGCAGGAGACAGCTGATGTCCGTGCTTaGGCCTTTCTTGCCATTGTT | + |
|
Preference number: 4 (lower is better) Translates to: YVSSSMRPVLRLLSLQETADVRA*AFLAIV Trigger: AACAATGGCAAGAAAGGCTCAAGCACGGACATCAGC...TGTCTCCTGCAGAGACAAGAGCCGAAGCACTGGTCTCATTGAAGACGACACGTA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048162.10 |
||
| CDS-3UTR GCA 90 bp | GGCTTACTAGCTTATGGGGTAGTACGTGTCGTCTTCAATGAGACCAGTGCTTCGGTGTCACCAGGGAGATaGTCTCACTGCTCTCAGATG | + |
|
Preference number: 4 (lower is better) Translates to: GLLAYGVVRVVFNETSASVSPGR*SHCSQM Trigger: CATCTGAGAGCAGTGAGAGCATCTCCCTGGTGACAC...CGAAGCACTGGTCTCATTGAAGACGACACGTACTACCCCATAAGCTAGTAAGCC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048162.10 |
||
| CDS-3UTR GCA 90 bp | ATCTTCATGCGGCCCTCATTGTCTCAGGGTAAGAGCCCCAGGCTGACTGTCTTCTTGGAAAGGGCCATCTaGACTTCTTCTTCAGTCATG | + |
|
Preference number: 4 (lower is better) Translates to: IFMRPSLSQGKSPRLTVFLERAI*TSSSVM Trigger: CATGACTGAAGAAGAAGTGCAGATGGCCCTTTCCAA...GAAGACAGTCAGCCTGGGGCTCTTACCCTGAGACAATGAGGGCCGCATGAAGAT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048162.10 |
||
| CDS-3UTR CCA 90 bp | CTCTTGCAGTGGCACAGATGGGCTAAGGACTTGGGTGCATCTGACATAAAAGCCCAGAGGCATCCACTTTaGAAAGGGCCATCTGCACTT | + |
|
Preference number: 4 (lower is better) Translates to: LLQWHRWAKDLGASDIKAQRHPL*KGPSAL Trigger: AAGTGCAGATGGCCCTTTCCAAAGTGGATGCCTCTG...GGCTTTTATGTCAGATGCACCCAAGTCCTTAGCCCATCTGTGCCACTGCAAGAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048162.10 |
||
| CDS-3UTR GCA 90 bp | CAAGAACAGGAAATGGTTGGGATGGAGATTCCAGAGAGGCACATTTCCCAGAGAGGACTTCTCTTTGACTaGCTGGTAGCTCTGCTGCAG | + |
|
Preference number: 4 (lower is better) Translates to: QEQEMVGMEIPERHISQRGLLFD*LVALLQ Trigger: CTGCAGCAGAGCTACCAGGCAGTCAAAGAGAAGTCC...TCTCTGGGAAATGTGCCTCTCTGGAATCTCCATCCCAACCATTTCCTGTTCTTG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048162.10 |
||
| CDS-3UTR GCA 90 bp | TACGTGTCGTCTTCAATGAGACCAGTGCTTCGGCTCTTGTCTCTGCAGGAGACACGAATGGGAAACAGCTaGTGGAACCATCTTGGTGTA | + |
|
Preference number: 4 (lower is better) Translates to: YVSSSMRPVLRLLSLQETRMGNS*WNHLGV Trigger: TACACCAAGATGGTTCCAGCAGCTGTTTCCCATTCG...TGTCTCCTGCAGAGACAAGAGCCGAAGCACTGGTCTCATTGAAGACGACACGTA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048162.10 |
||
| CDS-3UTR CCA 90 bp | CTAAGGTTGGCACAAATCAGACTTCTGGATCTGTATTTGAAAAGGCTCTTTCAAGTGCAGCTGCAGGGTTaGCAACCTGTGTCACCAGGG | + |
|
Preference number: 4 (lower is better) Translates to: LRLAQIRLLDLYLKRLFQVQLQG*QPVSPG Trigger: CCCTGGTGACACAGGTTGCCAACCCTGCAGCTGCAC...TTGAAAGAGCCTTTTCAAATACAGATCCAGAAGTCTGATTTGTGCCAACCTTAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048162.10 |
||
| CDS-3UTR CCA 90 bp | CAAGAACAGGAAATGGTTGGGATGGAGATTCCAGAGAGGCACATTTCCCAGAGAGCCTCAAACAGCTTTTaGGACAGGTCTTTAGGTAGC | + |
|
Preference number: 4 (lower is better) Translates to: QEQEMVGMEIPERHISQRASNSF*DRSLGS Trigger: GCTACCTAAAGACCTGTCCCAAAAGCTGTTTGAGGC...TCTCTGGGAAATGTGCCTCTCTGGAATCTCCATCCCAACCATTTCCTGTTCTTG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048162.10 |
||
| CDS-3UTR CCA 90 bp | CTAAGGTTGGCACAAATCAGACTTCTGGATCTGTATTTGAAAAGGCTCTTTCAATCAGGGTCTCTACTCTaGCTGGTGGCCTGGGTTCTG | + |
|
Preference number: 4 (lower is better) Translates to: LRLAQIRLLDLYLKRLFQSGSLL*LVAWVL Trigger: CAGAACCCAGGCCACCAGCCAGAGTAGAGACCCTGA...TTGAAAGAGCCTTTTCAAATACAGATCCAGAAGTCTGATTTGTGCCAACCTTAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048162.10 |
||
| CDS-3UTR GCA 90 bp | CAAGAACAGGAAATGGTTGGGATGGAGATTCCAGAGAGGCACATTTCCCAGAGACTCTTTTGGAATCTTTaGCTCTTTTGGAGATGGTAC | + |
|
Preference number: 4 (lower is better) Translates to: QEQEMVGMEIPERHISQRLFWNL*LFWRWY Trigger: GTACCATCTCCAAAAGAGGCAAAGATTCCAAAAGAG...TCTCTGGGAAATGTGCCTCTCTGGAATCTCCATCCCAACCATTTCCTGTTCTTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000048162.10 |
||
| CDS-3UTR CCA 90 bp | CAAGAACAGGAAATGGTTGGGATGGAGATTCCAGAGAGGCACATTTCCCAGAGAAATCTTTGCCTCTTTTaGAGATGGTACAATGCCTTC | + |
|
Preference number: 4 (lower is better) Translates to: QEQEMVGMEIPERHISQRNLCLF*RWYNAF Trigger: GAAGGCATTGTACCATCTCCAAAAGAGGCAAAGATT...TCTCTGGGAAATGTGCCTCTCTGGAATCTCCATCCCAACCATTTCCTGTTCTTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048162.10 |
||
| CDS GCA 90 bp | TCTTCCTCCCAGCCAGGCTCTTCAGAGATACTCTGGTCTGCCCGCTaGTTCAGGGCATCCCTCCGGGCCTGCTCCTGTTCAAGCTGGTGG | + |
|
Preference number: 5 (lower is better) Translates to: SSSQPGSSEILWSAR*FRASLRACSCSSWW Trigger: CCACCAGCTTGAACAGGAGCAGGCCCGGAGGGATGCCCTGAAGCAGCGGGCAGACCAGAGTATCTCTGAAGAGCCTGGCTGGGAGGAAGA 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048162.10 |
||
| CDS TCA 90 bp | CAATTCCGGGGGCCCATCAGGTTCGTTGCAGTACGTGGCCGGGTCTaGCTGCAGACTGTAGAGGCGAGCCTTGGTGCCGTCATATGGCTC | + |
|
Preference number: 5 (lower is better) Translates to: QFRGPIRFVAVRGRV*LQTVEASLGAVIWL Trigger: GAGCCATATGACGGCACCAAGGCTCGCCTCTACAGTCTGCAGTCAGACCCGGCCACGTACTGCAACGAACCTGATGGGCCCCCGGAATTG 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000048162.10 |
||
| CDS CCA 90 bp | AGCTCCTCTTCTTCTTCCTCCCAGCCAGGCTCTTCAGAGATACTCTaGTCTGCCCGCTGCTTCAGGGCATCCCTCCGGGCCTGCTCCTGT | + |
|
Preference number: 5 (lower is better) Translates to: SSSSSSSQPGSSEIL*SARCFRASLRACSC Trigger: ACAGGAGCAGGCCCGGAGGGATGCCCTGAAGCAGCGGGCAGACCAGAGTATCTCTGAAGAGCCTGGCTGGGAGGAAGAAGAAGAGGAGCT 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048162.10 |
||
| CDS CCA 90 bp | GTTGGCAACCTGTGTCACCAGGGAGATGCTCTCACTGCTCTCAGATaGGGTGGCCTCTGCAGGGGGCTCCACTGGAGTCTCCTCACAAGG | + |
|
Preference number: 5 (lower is better) Translates to: VGNLCHQGDALTALR*GGLCRGLHWSLLTR Trigger: CCTTGTGAGGAGACTCCAGTGGAGCCCCCTGCAGAGGCCACCCCATCTGAGAGCAGTGAGAGCATCTCCCTGGTGACACAGGTTGCCAAC 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000048162.10 |
||
| CDS-3UTR CAA 90 bp | TGCCCCAGCACACAGCATCACCAGGGCAGCATCCGCGCAGCACCAGATCTTCATGTGGCCAGCTTCTCCTaGACCACACTGGCTGTGGCT | + |
|
Preference number: 5 (lower is better) Translates to: CPSTQHHQGSIRAAPDLHVASFS*TTLAVA Trigger: AGCCACAGCCAGTGTGGTCAAGGAGAAGCTGGCCAC...ATGAAGATCTGGTGCTGCGCGGATGCTGCCCTGGTGATGCTGTGTGCTGGGGCA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048162.10 |
||
| CDS CCA 90 bp | AGGCATCAAACAATTCCGGGGGCCCATCAGGTTCGTTGCAGTACGTaGCCGGGTCTGACTGCAGACTGTAGAGGCGAGCCTTGGTGCCGT | + |
|
Preference number: 5 (lower is better) Translates to: RHQTIPGAHQVRCST*PGLTADCRGEPWCR Trigger: ACGGCACCAAGGCTCGCCTCTACAGTCTGCAGTCAGACCCGGCCACGTACTGCAACGAACCTGATGGGCCCCCGGAATTGTTTGATGCCT 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000048162.10 |
||
| CDS-3UTR CAA 90 bp | CCTTTAAATGAGTCACTGGTGGATGCCCCAGCACACAGCATCACCAGGGCAGCAGGTGCAGCTGCAGGGTaGGCAACCTGTGTCACCAGG | + |
|
Preference number: 5 (lower is better) Translates to: PLNESLVDAPAHSITRAAGAAAG*ATCVTR Trigger: CCTGGTGACACAGGTTGCCAACCCTGCAGCTGCACC...TGCTGCCCTGGTGATGCTGTGTGCTGGGGCATCCACCAGTGACTCATTTAAAGG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048162.10 |
||
| CDS GCA 90 bp | GGAGCCTTCAGTGGCCAGCTTCTCCTTGACCACACTGGCTGTGGCTaGTATGGTGCAGGCCGTGTCATGCTGAACCACCTGGGTAAATTC | + |
|
Preference number: 5 (lower is better) Translates to: GAFSGQLLLDHTGCG*YGAGRVMLNHLGKF Trigger: GAATTTACCCAGGTGGTTCAGCATGACACGGCCTGCACCATAGCAGCCACAGCCAGTGTGGTCAAGGAGAAGCTGGCCACTGAAGGCTCC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000048162.10 ENSMUST00000138013.3 |
||
| CDS-3UTR CAA 90 bp | TGCCCCAGCACACAGCATCACCAGGGCAGCATCCGCGCAGCACCAGATCTTCATTCACAGTCGATGGTTTaGTCTGGAGAGGGGGCAAAG | + |
|
Preference number: 5 (lower is better) Translates to: CPSTQHHQGSIRAAPDLHSQSMV*SGEGAK Trigger: CTTTGCCCCCTCTCCAGACAAAACCATCGACTGTGA...ATGAAGATCTGGTGCTGCGCGGATGCTGCCCTGGTGATGCTGTGTGCTGGGGCA 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000048162.10 |
||
| CDS-3UTR CAA 90 bp | ACCAGTGCTTCGGCTCTTGTCTCTGCAGGAGACAGCTACCCCTCGAGGTCTCCCCCTTTCTTGCCATTGTaGGAGGGTGTAGACTTCCCA | + |
|
Preference number: 5 (lower is better) Translates to: TSASALVSAGDSYPSRSPPFLPL*EGVDFP Trigger: TGGGAAGTCTACACCCTCCAACAATGGCAAGAAAGG...GGGAGACCTCGAGGGGTAGCTGTCTCCTGCAGAGACAAGAGCCGAAGCACTGGT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000048162.10 |
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| CDS TCA 90 bp | TTGACCACACTGGCTGTGGCTGCTATGGTGCAGGCCGTGTCATGCTaGACCACCTGGGTAAATTCTGTCAGGTCCCGCTTCATGAACTCC | + |
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Preference number: 5 (lower is better) Translates to: LTTLAVAAMVQAVSC*TTWVNSVRSRFMNS Trigger: GGAGTTCATGAAGCGGGACCTGACAGAATTTACCCAGGTGGTTCAGCATGACACGGCCTGCACCATAGCAGCCACAGCCAGTGTGGTCAA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048162.10 |
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| CDS CCA 90 bp | AATGGGAAACAGCTGCTGGAACCATCTTGGTGTAGAGGGCTCGGATaGAGGGGCTGCCTACAAGGAGCTCTGAGATCTCCCCTTTCTTCT | + |
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Preference number: 5 (lower is better) Translates to: NGKQLLEPSWCRGLG*RGCLQGALRSPLSS Trigger: AGAAGAAAGGGGAGATCTCAGAGCTCCTTGTAGGCAGCCCCTCCATCCGAGCCCTCTACACCAAGATGGTTCCAGCAGCTGTTTCCCATT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000048162.10 |
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| CDS-3UTR CAA 90 bp | CGAGGTCTCCCAGTAGGAATCCCTACAATAGCAGGGAAATGCAGGCTCTCCGGTGAGCCTTTCTTGCCATaGTTGGAGGGTGTAGACTTC | + |
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Preference number: 5 (lower is better) Translates to: RGLPVGIPTIAGKCRLSGEPFLP*LEGVDF Trigger: GAAGTCTACACCCTCCAACAATGGCAAGAAAGGCTC...ACCGGAGAGCCTGCATTTCCCTGCTATTGTAGGGATTCCTACTGGGAGACCTCG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048162.10 |
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| CDS-3UTR CAA 90 bp | ATCTTCATGCGGCCCTCATTGTCTCAGGGTAAGAGCCCCAGGCTGACTGTCTTCGTGCTTGAGCCTTTCTaGCCATTGTTGGAGGGTGTA | + |
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Preference number: 5 (lower is better) Translates to: IFMRPSLSQGKSPRLTVFVLEPF*PLLEGV Trigger: TACACCCTCCAACAATGGCAAGAAAGGCTCAAGCAC...GAAGACAGTCAGCCTGGGGCTCTTACCCTGAGACAATGAGGGCCGCATGAAGAT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048162.10 |
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| CDS-3UTR CAA 90 bp | ACCAGTGCTTCGGCTCTTGTCTCTGCAGGAGACAGCTACCCCTCGAGGTCTCCCTCTCTTTTGGAATCTTaGCCTCTTTTGGAGATGGTA | + |
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Preference number: 5 (lower is better) Translates to: TSASALVSAGDSYPSRSPSLLES*PLLEMV Trigger: TACCATCTCCAAAAGAGGCAAAGATTCCAAAAGAGA...GGGAGACCTCGAGGGGTAGCTGTCTCCTGCAGAGACAAGAGCCGAAGCACTGGT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000048162.10 |
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| CDS-3UTR CAA 90 bp | ACCAGTGCTTCGGCTCTTGTCTCTGCAGGAGACAGCTACCCCTCGAGGTCTCCCGGGGATGTAGTAGTTTaGGTCTCTTTTGGAATCTTT | + |
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Preference number: 5 (lower is better) Translates to: TSASALVSAGDSYPSRSPGDVVV*VSFGIF Trigger: AAAGATTCCAAAAGAGACCAAAACTACTACATCCCC...GGGAGACCTCGAGGGGTAGCTGTCTCCTGCAGAGACAAGAGCCGAAGCACTGGT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000048162.10 |
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| CDS GCA 90 bp | ACATCTTCCAGCTCACCAGAGGCATCCACTTTGGAAAGGGCCATCTaGACTTCTTCTTCAGTCATGTCCAAGTCGAAGTCCTTCTCCCAG | + |
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Preference number: 5 (lower is better) Translates to: TSSSSPEASTLERAI*TSSSVMSKSKSFSQ Trigger: CTGGGAGAAGGACTTCGACTTGGACATGACTGAAGAAGAAGTGCAGATGGCCCTTTCCAAAGTGGATGCCTCTGGTGAGCTGGAAGATGT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048162.10 |
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| CDS TCA 72 bp | GGGCCCATCAGGTTCGTTGCAGTACGTGGCCGGGTCTaGCTGCAGACTGTAGAGGCGAGCCTTGGTGCCGTC | + |
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Preference number: 6 (lower is better) Translates to: GPIRFVAVRGRV*LQTVEASLGAV Trigger: GACGGCACCAAGGCTCGCCTCTACAGTCTGCAGTCAGACCCGGCCACGTACTGCAACGAACCTGATGGGCCC 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048162.10 |
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| CDS GCA 72 bp | CAGCCAGGCTCTTCAGAGATACTCTGGTCTGCCCGCTaGTTCAGGGCATCCCTCCGGGCCTGCTCCTGTTCA | + |
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Preference number: 6 (lower is better) Translates to: QPGSSEILWSAR*FRASLRACSCS Trigger: TGAACAGGAGCAGGCCCGGAGGGATGCCCTGAAGCAGCGGGCAGACCAGAGTATCTCTGAAGAGCCTGGCTG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048162.10 |
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| CDS GCA 72 bp | GGTTGGCAACCTGTGTCACCAGGGAGATGCTCTCACTaGTCTCAGATGGGGTGGCCTCTGCAGGGGGCTCCA | + |
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Preference number: 6 (lower is better) Translates to: GWQPVSPGRCSH*SQMGWPLQGAP Trigger: TGGAGCCCCCTGCAGAGGCCACCCCATCTGAGAGCAGTGAGAGCATCTCCCTGGTGACACAGGTTGCCAACC 62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000048162.10 |
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| CDS CCA 72 bp | ACAATTCCGGGGGCCCATCAGGTTCGTTGCAGTACGTaGCCGGGTCTGACTGCAGACTGTAGAGGCGAGCCT | + |
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Preference number: 6 (lower is better) Translates to: TIPGAHQVRCST*PGLTADCRGEP Trigger: AGGCTCGCCTCTACAGTCTGCAGTCAGACCCGGCCACGTACTGCAACGAACCTGATGGGCCCCCGGAATTGT 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000048162.10 |
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| CDS CAA 72 bp | GTTGCTCCTGAGGAGCCTTCAGTGGCCAGCTTCTCCTaGACCACACTGGCTGTGGCTGCTATGGTGCAGGCC | + |
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Preference number: 6 (lower is better) Translates to: VAPEEPSVASFS*TTLAVAAMVQA Trigger: GGCCTGCACCATAGCAGCCACAGCCAGTGTGGTCAAGGAGAAGCTGGCCACTGAAGGCTCCTCAGGAGCAAC 61% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000048162.10 ENSMUST00000138013.3 |
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| CDS CAA 72 bp | TTAGGTAGCTCTGGCGCCTCCGGTGCAGCTGCAGGGTaGGCAACCTGTGTCACCAGGGAGATGCTCTCACTG | + |
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Preference number: 6 (lower is better) Translates to: LGSSGASGAAAG*ATCVTREMLSL Trigger: CAGTGAGAGCATCTCCCTGGTGACACAGGTTGCCAACCCTGCAGCTGCACCGGAGGCGCCAGAGCTACCTAA 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048162.10 |
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| CDS GCA 72 bp | AGTGGCCAGCTTCTCCTTGACCACACTGGCTGTGGCTaGTATGGTGCAGGCCGTGTCATGCTGAACCACCTG | + |
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Preference number: 6 (lower is better) Translates to: SGQLLLDHTGCG*YGAGRVMLNHL Trigger: CAGGTGGTTCAGCATGACACGGCCTGCACCATAGCAGCCACAGCCAGTGTGGTCAAGGAGAAGCTGGCCACT 60% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000048162.10 ENSMUST00000138013.3 |
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| CDS CCA 72 bp | CTGCAGACTGTAGAGGCGAGCCTTGGTGCCGTCATATaGCTCAGCTGTGCCAGAGGGTGTACCCATCAGGGT | + |
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Preference number: 6 (lower is better) Translates to: LQTVEASLGAVI*LSCARGCTHQG Trigger: ACCCTGATGGGTACACCCTCTGGCACAGCTGAGCCATATGACGGCACCAAGGCTCGCCTCTACAGTCTGCAG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048162.10 |
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| CDS CCA 72 bp | CAGCTGCTGGAACCATCTTGGTGTAGAGGGCTCGGATaGAGGGGCTGCCTACAAGGAGCTCTGAGATCTCCC | + |
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Preference number: 6 (lower is better) Translates to: QLLEPSWCRGLG*RGCLQGALRSP Trigger: GGGAGATCTCAGAGCTCCTTGTAGGCAGCCCCTCCATCCGAGCCCTCTACACCAAGATGGTTCCAGCAGCTG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048162.10 |
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| CDS CAA 90 bp | GACAGGTCTTTAGGTAGCTCTGGCGCCTCCGGTGCAGCTGCAGGGTaGGCAACCTGTGTCACCAGGGAGATGCTCTCACTGCTCTCAGAT | + |
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Preference number: 6 (lower is better) Translates to: DRSLGSSGASGAAAG*ATCVTREMLSLLSD Trigger: ATCTGAGAGCAGTGAGAGCATCTCCCTGGTGACACAGGTTGCCAACCCTGCAGCTGCACCGGAGGCGCCAGAGCTACCTAAAGACCTGTC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048162.10 |
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| CDS GCA 72 bp | CATGAACTCCAAAGCTTCCGTGGACTTCTCTTTGACTaGCTGGTAGCTCTGCTGCAGCCAGCTCCGCCACCA | + |
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Preference number: 6 (lower is better) Translates to: HELQSFRGLLFD*LVALLQPAPPP Trigger: TGGTGGCGGAGCTGGCTGCAGCAGAGCTACCAGGCAGTCAAAGAGAAGTCCACGGAAGCTTTGGAGTTCATG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048162.10 |
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| CDS GCA 72 bp | AGGCATCAAACAATTCCGGGGGCCCATCAGGTTCGTTaGAGTACGTGGCCGGGTCTGACTGCAGACTGTAGA | + |
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Preference number: 6 (lower is better) Translates to: RHQTIPGAHQVR*STWPGLTADCR Trigger: TCTACAGTCTGCAGTCAGACCCGGCCACGTACTGCAACGAACCTGATGGGCCCCCGGAATTGTTTGATGCCT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000048162.10 |
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| CDS GCA 72 bp | GAACCATCTTGGTGTAGAGGGCTCGGATGGAGGGGCTaGCTACAAGGAGCTCTGAGATCTCCCCTTTCTTCT | + |
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Preference number: 6 (lower is better) Translates to: EPSWCRGLGWRG*LQGALRSPLSS Trigger: AGAAGAAAGGGGAGATCTCAGAGCTCCTTGTAGGCAGCCCCTCCATCCGAGCCCTCTACACCAAGATGGTTC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000048162.10 |
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| CDS TCA 72 bp | TCATGTCCAAGTCGAAGTCCTTCTCCCAGTCCTCGCTaGTGTCCGTGCTTGAGCCTTTCTTGCCATTGTTGG | + |
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Preference number: 6 (lower is better) Translates to: SCPSRSPSPSPR*CPCLSLSCHCW Trigger: CCAACAATGGCAAGAAAGGCTCAAGCACGGACATCAGCGAGGACTGGGAGAAGGACTTCGACTTGGACATGA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048162.10 |
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| CDS CAA 90 bp | CCAGAGGGTGTACCCATCAGGGTGATGACATCACAGTCGATGGTTTaGTCTGGAGAGGGGGCAAAGGTATCTGAGATCACCCCTAAGAAG | + |
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Preference number: 6 (lower is better) Translates to: PEGVPIRVMTSQSMV*SGEGAKVSEITPKK Trigger: CTTCTTAGGGGTGATCTCAGATACCTTTGCCCCCTCTCCAGACAAAACCATCGACTGTGATGTCATCACCCTGATGGGTACACCCTCTGG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000048162.10 ENSMUST00000138013.3 |
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| CDS CAA 72 bp | GTACCCATCAGGGTGATGACATCACAGTCGATGGTTTaGTCTGGAGAGGGGGCAAAGGTATCTGAGATCACC | + |
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Preference number: 6 (lower is better) Translates to: VPIRVMTSQSMV*SGEGAKVSEIT Trigger: GGTGATCTCAGATACCTTTGCCCCCTCTCCAGACAAAACCATCGACTGTGATGTCATCACCCTGATGGGTAC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000048162.10 ENSMUST00000138013.3 |
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| CDS CAA 72 bp | TCGCTGATGTCCGTGCTTGAGCCTTTCTTGCCATTGTaGGAGGGTGTAGACTTCCCACTATCTGAGTTCAGC | + |
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Preference number: 6 (lower is better) Translates to: SLMSVLEPFLPL*EGVDFPLSEFS Trigger: GCTGAACTCAGATAGTGGGAAGTCTACACCCTCCAACAATGGCAAGAAAGGCTCAAGCACGGACATCAGCGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048162.10 |
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| CDS CAA 72 bp | CACTCTACATCTTCCAGCTCACCAGAGGCATCCACTTaGGAAAGGGCCATCTGCACTTCTTCTTCAGTCATG | + |
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Preference number: 6 (lower is better) Translates to: HSTSSSSPEAST*ERAICTSSSVM Trigger: CATGACTGAAGAAGAAGTGCAGATGGCCCTTTCCAAAGTGGATGCCTCTGGTGAGCTGGAAGATGTAGAGTG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048162.10 |
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