RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for BRPF3 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000063952

Ensembl transcript IDs: ENSMUST00000004985.11, ENSMUST00000136233.2, ENSMUST00000140587.9, ENSMUST00000140973.9, ENSMUST00000156029.8, ENSMUST00000232705.2, ENSMUST00000232997.2, ENSMUST00000233088.2, ENSMUST00000233561.2, ENSMUST00000233646.2, ENSMUST00000233701.2, ENSMUST00000233709.2

Found 1126 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp GCAGGGGCAGCAATCCCAGAGGGCGGGTGCTGGAGGGCAGTGCCATaGCGCACGCCACCCGCCACCCGCCACCCGCCACCCGCCGCCCGT +
Preference number: 1 (lower is better)
Translates to: AGAAIPEGGCWRAVP*RTPPATRHPPPAAR
Trigger: ACGGGCGGCGGGTGGCGGGTGGCGGGTGGCGGGTGGCGTGCGGCATGGCACTGCCCTCCAGCACCCGCCCTCTGGGATTGCTGCCCCTGC
78% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000004985.11
ENSMUST00000140973.9
ENSMUST00000156029.8
ENSMUST00000232997.2
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233709.2
3UTR TCA 90 bp CACCCGCCACCCGCCGCCCGTGCCGCGGTGATCATGCTGATGCAGTaGGGCTTATGGCTGCTGCAGGAGGGGAGGGCAGCAGCATGCCTG +
Preference number: 1 (lower is better)
Translates to: HPPPAARAAVIMLMQ*GLWLLQEGRAAACL
Trigger: CAGGCATGCTGCTGCCCTCCCCTCCTGCAGCAGCCATAAGCCTCACTGCATCAGCATGATCACCGCGGCACGGGCGGCGGGTGGCGGGTG
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000004985.11
ENSMUST00000140973.9
ENSMUST00000156029.8
ENSMUST00000232997.2
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233709.2
3UTR GCA 90 bp TTCGGGCAAGTGGGTGCCCCTCTCAGGATCATAGCCGATGTTCTCTaGCTGCCGCCGGGCGTGCCGCAGGATGGCCCCTCCCAGGTCCCG +
Preference number: 1 (lower is better)
Translates to: FGQVGAPLRIIADVL*LPPGVPQDGPSQVP
Trigger: CGGGACCTGGGAGGGGCCATCCTGCGGCACGCCCGGCGGCAGGCAGAGAACATCGGCTATGATCCTGAGAGGGGCACCCACTTGCCCGAA
69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000232705.2
ENSMUST00000232997.2
3UTR TCA 90 bp GGAGCTGTGGTGGCGGTGGCTGTGCTAGCTTTTGCCGAAGGGCATTaGTCTCCCTGCGCAGCATGCGGACACGACGGGTGCGGGCCCCGC +
Preference number: 1 (lower is better)
Translates to: GAVVAVAVLAFAEGH*SPCAACGHDGCGPR
Trigger: GCGGGGCCCGCACCCGTCGTGTCCGCATGCTGCGCAGGGAGATCAATGCCCTTCGGCAAAAGCTAGCACAGCCACCGCCACCACAGCTCC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000232705.2
ENSMUST00000232997.2
3UTR CCA 90 bp GATCATAGCCGATGTTCTCTGCCTGCCGCCGGGCGTGCCGCAGGATaGCCCCTCCCAGGTCCCGGAGGCGGACAGCTGCTCGGTGGAAAA +
Preference number: 1 (lower is better)
Translates to: DHSRCSLPAAGRAAG*PLPGPGGGQLLGGK
Trigger: TTTTCCACCGAGCAGCTGTCCGCCTCCGGGACCTGGGAGGGGCCATCCTGCGGCACGCCCGGCGGCAGGCAGAGAACATCGGCTATGATC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000232705.2
ENSMUST00000232997.2
3UTR CCA 90 bp TGCGCAGCATGCGGACACGACGGGTGCGGGCCCCGCTGGACCGCATaGTGCTCACCAGATCCAGTTTCTCCAGCAGTTCCTTCAGCTGTG +
Preference number: 1 (lower is better)
Translates to: CAACGHDGCGPRWTA*CSPDPVSPAVPSAV
Trigger: CACAGCTGAAGGAACTGCTGGAGAAACTGGATCTGGTGAGCACCATGCGGTCCAGCGGGGCCCGCACCCGTCGTGTCCGCATGCTGCGCA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000232705.2
ENSMUST00000232997.2
3UTR GCA 90 bp CCTTGGAAGCCACTGCCTAGAATGCAAGCAGAGCTGAGGTGCAGCTaGAGAAGGCCCTACGGGGGCCTCTGGACCCAGCTCCAGGTCAGG +
Preference number: 1 (lower is better)
Translates to: PWKPLPRMQAELRCS*RRPYGGLWTQLQVR
Trigger: CCTGACCTGGAGCTGGGTCCAGAGGCCCCCGTAGGGCCTTCTGCAGCTGCACCTCAGCTCTGCTTGCATTCTAGGCAGTGGCTTCCAAGG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000156029.8
3UTR GCA 90 bp CCCTCGGAGACCCAGTCCAGTCAGGGCCTGCCATTAGAAAGAAGCTaGCGGCCATACACGTGGCAGGGGCAGCAGAGGTTCTCATGCCTC +
Preference number: 1 (lower is better)
Translates to: PSETQSSQGLPLERS*RPYTWQGQQRFSCL
Trigger: GAGGCATGAGAACCTCTGCTGCCCCTGCCACGTGTATGGCCGGCAGCTTCTTTCTAATGGCAGGCCCTGACTGGACTGGGTCTCCGAGGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 11 transcripts:
ENSMUST00000004985.11
ENSMUST00000140587.9
ENSMUST00000140973.9
ENSMUST00000156029.8
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
3UTR GCA 90 bp AGCTCCGGCTCCTTGGCCGCTTCCGGGAATAGTGTTCATCCTCTGTaGTGGCTGGAGAAGCAGGATCGTCCTCTGGGCCATGGTCCTCGC +
Preference number: 1 (lower is better)
Translates to: SSGSLAASGNSVHPL*WLEKQDRPLGHGPR
Trigger: GCGAGGACCATGGCCCAGAGGACGATCCTGCTTCTCCAGCCAGCACAGAGGATGAACACTATTCCCGGAAGCGGCCAAGGAGCCGGAGCT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000232705.2
ENSMUST00000232997.2
3UTR CCA 90 bp TGCCCTGAGGTATGGTTAGGTGGGAGAGACATGGAGAGAGCCGGCTaGCCCCAGAAAAGCAGCCTAGGCCCTCTTGCCTTGTGGGCCAGG +
Preference number: 1 (lower is better)
Translates to: CPEVWLGGRDMERAG*PQKSSLGPLALWAR
Trigger: CCTGGCCCACAAGGCAAGAGGGCCTAGGCTGCTTTTCTGGGGCCAGCCGGCTCTCTCCATGTCTCTCCCACCTAACCATACCTCAGGGCA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 10 transcripts:
ENSMUST00000004985.11
ENSMUST00000140973.9
ENSMUST00000156029.8
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
3UTR CCA 90 bp AGGACGGAGGTTCGGCGGCCCACGGTGCCGAGAGGGGTGTCAGGATaGCTGTCGGGGTTTGTGAGGGACAGTCTGTCAATGCCATTGTCA +
Preference number: 1 (lower is better)
Translates to: RTEVRRPTVPRGVSG*LSGFVRDSLSMPLS
Trigger: TGACAATGGCATTGACAGACTGTCCCTCACAAACCCCGACAGCCATCCTGACACCCCTCTCGGCACCGTGGGCCGCCGAACCTCCGTCCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000232705.2
ENSMUST00000232997.2
3UTR GCA 90 bp TTTGTCCCTTGGAAGCCACTGCCTAGAATGCAAGCAGAGCTGAGGTaGAGCTGCAGAAGGCCCTACGGGGGCCTCTGGACCCAGCTCCAG +
Preference number: 1 (lower is better)
Translates to: FVPWKPLPRMQAELR*SCRRPYGGLWTQLQ
Trigger: CTGGAGCTGGGTCCAGAGGCCCCCGTAGGGCCTTCTGCAGCTGCACCTCAGCTCTGCTTGCATTCTAGGCAGTGGCTTCCAAGGGACAAA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000156029.8
3UTR CCA 90 bp TCCGGCTCCTTGGCCGCTTCCGGGAATAGTGTTCATCCTCTGTGCTaGCTGGAGAAGCAGGATCGTCCTCTGGGCCATGGTCCTCGCCAT +
Preference number: 1 (lower is better)
Translates to: SGSLAASGNSVHPLC*LEKQDRPLGHGPRH
Trigger: ATGGCGAGGACCATGGCCCAGAGGACGATCCTGCTTCTCCAGCCAGCACAGAGGATGAACACTATTCCCGGAAGCGGCCAAGGAGCCGGA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000232705.2
ENSMUST00000232997.2
3UTR CCA 90 bp CTGAGGGGACCTCTCCCCTTCACTGTCACTACAGCTCCGGCTCCTTaGCCGCTTCCGGGAATAGTGTTCATCCTCTGTGCTGGCTGGAGA +
Preference number: 1 (lower is better)
Translates to: LRGPLPFTVTTAPAP*PLPGIVFILCAGWR
Trigger: TCTCCAGCCAGCACAGAGGATGAACACTATTCCCGGAAGCGGCCAAGGAGCCGGAGCTGTAGTGACAGTGAAGGGGAGAGGTCCCCTCAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000232705.2
ENSMUST00000232997.2
3UTR CCA 90 bp CTTGTCCACAGTGTCCTCCACACCCAGGGGCAGGACTTTGTCCCTTaGAAGCCACTGCCTGCCAGCTTCAAACGCCAGTCCTCCACTGAG +
Preference number: 1 (lower is better)
Translates to: LVHSVLHTQGQDFVP*KPLPASFKRQSSTE
Trigger: CTCAGTGGAGGACTGGCGTTTGAAGCTGGCAGGCAGTGGCTTCCAAGGGACAAAGTCCTGCCCCTGGGTGTGGAGGACACTGTGGACAAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000232997.2
3UTR TCA 90 bp GACTTCTCCCTGGGCCCAGGCTGTAGCCCTCATCCTGTAGCTTTCTaGGCAAAGTCTCCTGAAAAGCCCCCTAAGGAGGCCCACTCCACC +
Preference number: 1 (lower is better)
Translates to: DFSLGPGCSPHPVAF*AKSPEKPPKEAHST
Trigger: GGTGGAGTGGGCCTCCTTAGGGGGCTTTTCAGGAGACTTTGCTCAGAAAGCTACAGGATGAGGGCTACAGCCTGGGCCCAGGGAGAAGTC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000156029.8
3UTR CCA 90 bp CTTGTCCACAGTGTCCTCCACACCCAGGGGCAGGACTTTGTCCCTTaGAAGCCACTGCCTAGAATGCAAGCAGAGCTGAGGTGCAGCTGC +
Preference number: 1 (lower is better)
Translates to: LVHSVLHTQGQDFVP*KPLPRMQAELRCSC
Trigger: GCAGCTGCACCTCAGCTCTGCTTGCATTCTAGGCAGTGGCTTCCAAGGGACAAAGTCCTGCCCCTGGGTGTGGAGGACACTGTGGACAAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000156029.8
3UTR CCA 90 bp ATAGTGTTCATCCTCTGTGCTGGCTGGAGAAGCAGGATCGTCCTCTaGGCCATGGTCCTCGCCATTCTCAAGGGTCCCATCGGGACCCCT +
Preference number: 1 (lower is better)
Translates to: IVFILCAGWRSRIVL*AMVLAILKGPIGTP
Trigger: AGGGGTCCCGATGGGACCCTTGAGAATGGCGAGGACCATGGCCCAGAGGACGATCCTGCTTCTCCAGCCAGCACAGAGGATGAACACTAT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000232705.2
ENSMUST00000232997.2
3UTR GCA 90 bp GGCGTGCCGCAGGATGGCCCCTCCCAGGTCCCGGAGGCGGACAGCTaGTCGGTGGAAAATTGTGTCTTTAGCATTATACTTCATGCAGTT +
Preference number: 1 (lower is better)
Translates to: GVPQDGPSQVPEADS*SVENCVFSIILHAV
Trigger: AACTGCATGAAGTATAATGCTAAAGACACAATTTTCCACCGAGCAGCTGTCCGCCTCCGGGACCTGGGAGGGGCCATCCTGCGGCACGCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000232705.2
ENSMUST00000232997.2
3UTR CCA 90 bp TGGCACACAGCAGCCCTCCAGGGGAACCACATGATTGGTCAATATTaGGTCTTGCCCTCGGAGACCCAGTCCAGTCAGGGCCTGCCATTA +
Preference number: 1 (lower is better)
Translates to: WHTAALQGNHMIGQY*VLPSETQSSQGLPL
Trigger: TAATGGCAGGCCCTGACTGGACTGGGTCTCCGAGGGCAAGACCCAATATTGACCAATCATGTGGTTCCCCTGGAGGGCTGCTGTGTGCCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 10 transcripts:
ENSMUST00000004985.11
ENSMUST00000140973.9
ENSMUST00000156029.8
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
3UTR CCA 90 bp GGGAAGGGAAGCTCTGAGGGTTCCCGAGGGACCCTGGCACATCTCTaGGATCAATGTCAGAACCTTGCCTGCCCTGAGGTATGGTTAGGT +
Preference number: 1 (lower is better)
Translates to: GKGSSEGSRGTLAHL*DQCQNLACPEVWLG
Trigger: ACCTAACCATACCTCAGGGCAGGCAAGGTTCTGACATTGATCCCAGAGATGTGCCAGGGTCCCTCGGGAACCCTCAGAGCTTCCCTTCCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 10 transcripts:
ENSMUST00000004985.11
ENSMUST00000140973.9
ENSMUST00000156029.8
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
3UTR TCA 90 bp CACCCACCATCAGCCTCTAGCGGCCTCATACAGCACACAGTGACTTaGACAATGACTTCTCTGCAACCTGCGGCAACCTGGCAGGACCCT +
Preference number: 1 (lower is better)
Translates to: HPPSASSGLIQHTVT*TMTSLQPAATWQDP
Trigger: AGGGTCCTGCCAGGTTGCCGCAGGTTGCAGAGAAGTCATTGTTCAAGTCACTGTGTGCTGTATGAGGCCGCTAGAGGCTGATGGTGGGTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000004985.11
3UTR TCA 90 bp CCACCTTCCGGGACTTTAGGAACCGGCTTGAAGGTTTGCTGTCGCTaGTGGGTTTCAGGGTTGGGGGATCTGGAGGGGATTCCTGTTCTG +
Preference number: 1 (lower is better)
Translates to: PPSGTLGTGLKVCCR*WVSGLGDLEGIPVL
Trigger: CAGAACAGGAATCCCCTCCAGATCCCCCAACCCTGAAACCCATCAGCGACAGCAAACCTTCAAGCCGGTTCCTAAAGTCCCGGAAGGTGG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000232705.2
ENSMUST00000232997.2
3UTR TCA 90 bp CCCTTGGAAGCCACTGCCTGCCAGCTTCAAACGCCAGTCCTCCACTaGGACCCAAACTACATTCCGAGTCAGACCCGCTTTCCGTGTGTT +
Preference number: 1 (lower is better)
Translates to: PLEATACQLQTPVLH*DPNYIPSQTRFPCV
Trigger: AACACACGGAAAGCGGGTCTGACTCGGAATGTAGTTTGGGTCTCAGTGGAGGACTGGCGTTTGAAGCTGGCAGGCAGTGGCTTCCAAGGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000232997.2
3UTR CCA 90 bp GCACATCTCTGGGATCAATGTCAGAACCTTGCCTGCCCTGAGGTATaGTTAGGTGGGAGAGACATGGAGAGAGCCGGCTGGCCCCAGAAA +
Preference number: 1 (lower is better)
Translates to: AHLWDQCQNLACPEV*LGGRDMERAGWPQK
Trigger: TTTCTGGGGCCAGCCGGCTCTCTCCATGTCTCTCCCACCTAACCATACCTCAGGGCAGGCAAGGTTCTGACATTGATCCCAGAGATGTGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 10 transcripts:
ENSMUST00000004985.11
ENSMUST00000140973.9
ENSMUST00000156029.8
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
3UTR CCA 90 bp TCCAGTTTCTCCAGCAGTTCCTTCAGCTGTGCCTCTGGGGACAGATaGGCCCGGTTCTCTGGGATAAGGATGTTGTCCACATCCTCCCAG +
Preference number: 1 (lower is better)
Translates to: SSFSSSSFSCASGDR*ARFSGIRMLSTSSQ
Trigger: CTGGGAGGATGTGGACAACATCCTTATCCCAGAGAACCGGGCCCATCTGTCCCCAGAGGCACAGCTGAAGGAACTGCTGGAGAAACTGGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000232705.2
ENSMUST00000232997.2
3UTR CCA 90 bp GCTCACCAGATCCAGTTTCTCCAGCAGTTCCTTCAGCTGTGCCTCTaGGGACAGATGGGCCCGGTTCTCTGGGATAAGGATGTTGTCCAC +
Preference number: 1 (lower is better)
Translates to: AHQIQFLQQFLQLCL*GQMGPVLWDKDVVH
Trigger: GTGGACAACATCCTTATCCCAGAGAACCGGGCCCATCTGTCCCCAGAGGCACAGCTGAAGGAACTGCTGGAGAAACTGGATCTGGTGAGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000232705.2
ENSMUST00000232997.2
3UTR TCA 90 bp GTCCACATCCTCCCAGGAGAATCGGTAAAAGTCTTCCAATCTGGGTaGTTCGGGCAAGTGGGTGCCCCTCTCAGGATCATAGCCGATGTT +
Preference number: 1 (lower is better)
Translates to: VHILPGESVKVFQSG*FGQVGAPLRIIADV
Trigger: AACATCGGCTATGATCCTGAGAGGGGCACCCACTTGCCCGAATCACCCAGATTGGAAGACTTTTACCGATTCTCCTGGGAGGATGTGGAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000232705.2
ENSMUST00000232997.2
3UTR CCA 90 bp CAGCCTAGGCCCTCTTGCCTTGTGGGCCAGGTCTATCTCCCTGGCTaGCTAAGACTCTCAGCTGTTTCTACTTCTAAGTGGTTCTTCAGT +
Preference number: 1 (lower is better)
Translates to: QPRPSCLVGQVYLPG*LRLSAVSTSKWFFS
Trigger: ACTGAAGAACCACTTAGAAGTAGAAACAGCTGAGAGTCTTAGCCAGCCAGGGAGATAGACCTGGCCCACAAGGCAAGAGGGCCTAGGCTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 10 transcripts:
ENSMUST00000004985.11
ENSMUST00000140973.9
ENSMUST00000156029.8
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
3UTR CCA 90 bp TGTTGTCCACATCCTCCCAGGAGAATCGGTAAAAGTCTTCCAATCTaGGTGATTCGGGCAAGTGGGTGCCCCTCTCAGGATCATAGCCGA +
Preference number: 1 (lower is better)
Translates to: CCPHPPRRIGKSLPI*VIRASGCPSQDHSR
Trigger: TCGGCTATGATCCTGAGAGGGGCACCCACTTGCCCGAATCACCCAGATTGGAAGACTTTTACCGATTCTCCTGGGAGGATGTGGACAACA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000232705.2
ENSMUST00000232997.2
3UTR TCA 90 bp ATAGTGTTGGGGGAAGGAGACAGAAAGGGAGAAGCCCCAAGATCTTaGCACAGGTTTAGACAAGGGTCACAGAGTCCACAGCTGACCAGC +
Preference number: 1 (lower is better)
Translates to: IVLGEGDRKGEAPRS*HRFRQGSQSPQLTS
Trigger: GCTGGTCAGCTGTGGACTCTGTGACCCTTGTCTAAACCTGTGTCAAGATCTTGGGGCTTCTCCCTTTCTGTCTCCTTCCCCCAACACTAT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 8 transcripts:
ENSMUST00000004985.11
ENSMUST00000140973.9
ENSMUST00000156029.8
ENSMUST00000232997.2
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233709.2
3UTR TCA 90 bp GATGGCCTTGTCAGGCATCATTGGGAGAAGAGGTCTTTGATCCAATaGAGGCTGGACAGATGCTCCAGTGTAGGGGAATCAAGGGTGGGA +
Preference number: 1 (lower is better)
Translates to: DGLVRHHWEKRSLIQ*RLDRCSSVGESRVG
Trigger: TCCCACCCTTGATTCCCCTACACTGGAGCATCTGTCCAGCCTTCATTGGATCAAAGACCTCTTCTCCCAATGATGCCTGACAAGGCCATC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000004985.11
3UTR GCA 90 bp AGCTCCCAGGGACTAAGCCACCAACTGAGTACACATGGCTCCAGGTaGATATATAGCAGAGGATGGCCTTGTCAGGCATCATTGGGAGAA +
Preference number: 1 (lower is better)
Translates to: SSQGLSHQLSTHGSR*IYSRGWPCQASLGE
Trigger: TTCTCCCAATGATGCCTGACAAGGCCATCCTCTGCTATATATGCACCTGGAGCCATGTGTACTCAGTTGGTGGCTTAGTCCCTGGGAGCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000004985.11
3UTR GCA 90 bp ATGCCATTGTCACTAAGCAAGCATTGCAAGGGCTCGCTCCCCAGTTaGAGGGCTGATTTTTCTAAGAGCTCCTCATCTTCCACCTTCCGG +
Preference number: 1 (lower is better)
Translates to: MPLSLSKHCKGSLPS*RADFSKSSSSSTFR
Trigger: CCGGAAGGTGGAAGATGAGGAGCTCTTAGAAAAATCAGCCCTGCAACTGGGGAGCGAGCCCTTGCAATGCTTGCTTAGTGACAATGGCAT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000232705.2
ENSMUST00000232997.2
3UTR CCA 90 bp ACATATCTTCTTTCCAAACCTTTCTCCAGGCCAGGCCCCTCACAATaGCCTCAGGCGTCAGCAATGTCTTACATGCCAAGGTGTCTGCAC +
Preference number: 1 (lower is better)
Translates to: TYLLSKPFSRPGPSQ*PQASAMSYMPRCLH
Trigger: GTGCAGACACCTTGGCATGTAAGACATTGCTGACGCCTGAGGCCATTGTGAGGGGCCTGGCCTGGAGAAAGGTTTGGAAAGAAGATATGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000004985.11
3UTR GCA 90 bp TCCAGGTTTTTCCGCCTCTACAATCAAGCTCTCCCAATAAACATGTaGAGAAGGATCCTGTTGCAGCGTCGTTCTTCCTGGCCAGTCGAG +
Preference number: 1 (lower is better)
Translates to: SRFFRLYNQALPINM*RRILLQRRSSWPVE
Trigger: CTCGACTGGCCAGGAAGAACGACGCTGCAACAGGATCCTTCTGCACATGTTTATTGGGAGAGCTTGATTGTAGAGGCGGAAAAACCTGGA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000004985.11
3UTR GCA 90 bp TTTGTGAGGGACAGTCTGTCAATGCCATTGTCACTAAGCAAGCATTaGAAGGGCTCGCTCCCCAGTTGCAGGGCTGATTTTTCTAAGAGC +
Preference number: 1 (lower is better)
Translates to: FVRDSLSMPLSLSKH*KGSLPSCRADFSKS
Trigger: GCTCTTAGAAAAATCAGCCCTGCAACTGGGGAGCGAGCCCTTGCAATGCTTGCTTAGTGACAATGGCATTGACAGACTGTCCCTCACAAA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000232705.2
ENSMUST00000232997.2
3UTR GCA 90 bp TGTTGCAGCGTCGTTCTTCCTGGCCAGTCGAGCGTGCGCAAGAACTaGCCAGCTCATAATTATGGATTTCTAAACCTGTTTTCAAGGCTT +
Preference number: 1 (lower is better)
Translates to: CCSVVLPGQSSVRKN*PAHNYGFLNLFSRL
Trigger: AAGCCTTGAAAACAGGTTTAGAAATCCATAATTATGAGCTGGGCAGTTCTTGCGCACGCTCGACTGGCCAGGAAGAACGACGCTGCAACA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000004985.11
3UTR CCA 90 bp CACCAACTGAGTACACATGGCTCCAGGTGCATATATAGCAGAGGATaGCCTTGTCAGGCATCATTGGGAGAAGAGGTCTTTGATCCAATG +
Preference number: 1 (lower is better)
Translates to: HQLSTHGSRCIYSRG*PCQASLGEEVFDPM
Trigger: CATTGGATCAAAGACCTCTTCTCCCAATGATGCCTGACAAGGCCATCCTCTGCTATATATGCACCTGGAGCCATGTGTACTCAGTTGGTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000004985.11
3UTR TCA 90 bp CCCACAGGCTCTTTGCACAGACATGCTATTCCTGAGAATGCCTCTTaGGTCTATGCTTCAAGATGCCCCTTTCTGAAAGGGTTTGTAACA +
Preference number: 1 (lower is better)
Translates to: PTGSLHRHAIPENAS*VYASRCPFLKGFVT
Trigger: TGTTACAAACCCTTTCAGAAAGGGGCATCTTGAAGCATAGACTCAAGAGGCATTCTCAGGAATAGCATGTCTGTGCAAAGAGCCTGTGGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000004985.11
3UTR-3UTR CCA 90 bp GGCGGGTGCTGGAGGGCAGTGCCATGCCGCACGCCACCCGCCACCCGCCACCCGGGCCCTCTTGCCTTGTaGGCCAGGTCTATCTCCCTG +
Preference number: 2 (lower is better)
Translates to: GGCWRAVPCRTPPATRHPGPLAL*ARSISL
Trigger: CAGGGAGATAGACCTGGCCCACAAGGCAAGAGGGCC...CGGGTGGCGGGTGGCGGGTGGCGTGCGGCATGGCACTGCCCTCCAGCACCCGCC
72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000004985.11
ENSMUST00000140973.9
ENSMUST00000156029.8
ENSMUST00000232997.2
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233709.2
3UTR-3UTR CCA 90 bp CACCCGCCACCCGCCACCCGCCGCCCGTGCCGCGGTGATCATGCTGATGCAGTGCAAGCACGGGCGGTGTaGGGGAAGGGAAGCTCTGAG +
Preference number: 2 (lower is better)
Translates to: HPPPATRRPCRGDHADAVQARAV*GKGSSE
Trigger: CTCAGAGCTTCCCTTCCCCCACACCGCCCGTGCTTG...CACTGCATCAGCATGATCACCGCGGCACGGGCGGCGGGTGGCGGGTGGCGGGTG
70% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000004985.11
ENSMUST00000140973.9
ENSMUST00000156029.8
ENSMUST00000232997.2
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233709.2
3UTR-3UTR TCA 90 bp GGGCGGGTGCTGGAGGGCAGTGCCATGCCGCACGCCACCCGCCACCCGCCACCCATCATGCTGATGCAGTaGGGCTTATGGCTGCTGCAG +
Preference number: 2 (lower is better)
Translates to: GRVLEGSAMPHATRHPPPIMLMQ*GLWLLQ
Trigger: CTGCAGCAGCCATAAGCCTCACTGCATCAGCATGAT...GGGTGGCGGGTGGCGGGTGGCGTGCGGCATGGCACTGCCCTCCAGCACCCGCCC
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000004985.11
ENSMUST00000140973.9
ENSMUST00000156029.8
ENSMUST00000232997.2
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233709.2
3UTR-3UTR CCA 90 bp CACCCGCCACCCGCCACCCGCCGCCCGTGCCGCGGTGATCATGCTGATGCAGTGCTGGAGGGCTGTGAGTaGGGGAGGGTCCTTACAGGT +
Preference number: 2 (lower is better)
Translates to: HPPPATRRPCRGDHADAVLEGCE*GRVLTG
Trigger: ACCTGTAAGGACCCTCCCCCACTCACAGCCCTCCAG...CACTGCATCAGCATGATCACCGCGGCACGGGCGGCGGGTGGCGGGTGGCGGGTG
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000004985.11
ENSMUST00000140973.9
ENSMUST00000156029.8
ENSMUST00000232997.2
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233709.2
3UTR-3UTR GCA 90 bp CGTCCTCTGGGCCATGGTCCTCGCCATTCTCAAGGGTCCCATCGGGACCCCTCTCCGATGTTCTCTGCCTaGCGCCGGGCGTGCCGCAGG +
Preference number: 2 (lower is better)
Translates to: RPLGHGPRHSQGSHRDPSPMFSA*RRACRR
Trigger: CCTGCGGCACGCCCGGCGGCAGGCAGAGAACATCGG...AGAGGGGTCCCGATGGGACCCTTGAGAATGGCGAGGACCATGGCCCAGAGGACG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000232705.2
ENSMUST00000232997.2
3UTR-3UTR GCA 90 bp TTCTTGAAGAGGACGGAGGTTCGGCGGCCCACGGTGCCGAGAGGGGTGTCAGGACCGATGTTCTCTGCCTaGCGCCGGGCGTGCCGCAGG +
Preference number: 2 (lower is better)
Translates to: FLKRTEVRRPTVPRGVSGPMFSA*RRACRR
Trigger: CCTGCGGCACGCCCGGCGGCAGGCAGAGAACATCGG...TCCTGACACCCCTCTCGGCACCGTGGGCCGCCGAACCTCCGTCCTCTTCAAGAA
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000232705.2
ENSMUST00000232997.2
3UTR CAA 90 bp AGGAGCTGTGGTGGCGGTGGCTGTGCTAGCTTTTGCCGAAGGGCATaGATCTCCCTGCGCAGCATGCGGACACGACGGGTGCGGGCCCCG +
Preference number: 2 (lower is better)
Translates to: RSCGGGGCASFCRRA*ISLRSMRTRRVRAP
Trigger: CGGGGCCCGCACCCGTCGTGTCCGCATGCTGCGCAGGGAGATCAATGCCCTTCGGCAAAAGCTAGCACAGCCACCGCCACCACAGCTCCT
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000232705.2
ENSMUST00000232997.2
3UTR-3UTR CCA 90 bp CTGCTGGAGGGCTGTGAGTGGGGGAGGGTCCTTACAGGTGGGGTAGCTTCTACCCCAGAGGGCGGGTGCTaGAGGGCAGTGCCATGCCGC +
Preference number: 2 (lower is better)
Translates to: LLEGCEWGRVLTGGVASTPEGGC*RAVPCR
Trigger: GCGGCATGGCACTGCCCTCCAGCACCCGCCCTCTGG...GGTAGAAGCTACCCCACCTGTAAGGACCCTCCCCCACTCACAGCCCTCCAGCAG
67% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 8 transcripts:
ENSMUST00000004985.11
ENSMUST00000140973.9
ENSMUST00000156029.8
ENSMUST00000232997.2
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233709.2
3UTR-3UTR GCA 90 bp CGAGGGACCCTGGCACATCTCTGGGATCAATGTCAGAACCTTGCCTGCCCTGAGTGCGGACACGACGGGTaGGGGCCCCGCTGGACCGCA +
Preference number: 2 (lower is better)
Translates to: RGTLAHLWDQCQNLACPECGHDG*GPRWTA
Trigger: TGCGGTCCAGCGGGGCCCGCACCCGTCGTGTCCGCA...CTCAGGGCAGGCAAGGTTCTGACATTGATCCCAGAGATGTGCCAGGGTCCCTCG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000232705.2
ENSMUST00000232997.2
3UTR-3UTR GCA 90 bp AGGGTCCTTACAGGTGGGGTAGCTTCTACCTGGGACTCAAGCGCCTGGCAGACATGCGGACACGACGGGTaGGGGCCCCGCTGGACCGCA +
Preference number: 2 (lower is better)
Translates to: RVLTGGVASTWDSSAWQTCGHDG*GPRWTA
Trigger: TGCGGTCCAGCGGGGCCCGCACCCGTCGTGTCCGCA...TGTCTGCCAGGCGCTTGAGTCCCAGGTAGAAGCTACCCCACCTGTAAGGACCCT
66% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000232705.2
ENSMUST00000232997.2
3UTR-3UTR GCA 90 bp GGGAGGGTCCTTACAGGTGGGGTAGCTTCTACCTGGGACTCAAGCGCCTGGCAGTCTCCCTGCGCAGCATaGGGACACGACGGGTGCGGG +
Preference number: 2 (lower is better)
Translates to: GRVLTGGVASTWDSSAWQSPCAA*GHDGCG
Trigger: CCCGCACCCGTCGTGTCCGCATGCTGCGCAGGGAGA...CTGCCAGGCGCTTGAGTCCCAGGTAGAAGCTACCCCACCTGTAAGGACCCTCCC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000232705.2
ENSMUST00000232997.2
3UTR-3UTR TCA 90 bp TGGGGGAAGGGAAGCTCTGAGGGTTCCCGAGGGACCCTGGCACATCTCTGGGATCCTGCTGGAGGGCTGTaGGTGGGGGAGGGTCCTTAC +
Preference number: 2 (lower is better)
Translates to: WGKGSSEGSRGTLAHLWDPAGGL*VGEGPY
Trigger: GTAAGGACCCTCCCCCACTCACAGCCCTCCAGCAGG...ATCCCAGAGATGTGCCAGGGTCCCTCGGGAACCCTCAGAGCTTCCCTTCCCCCA
64% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 8 transcripts:
ENSMUST00000004985.11
ENSMUST00000140973.9
ENSMUST00000156029.8
ENSMUST00000232997.2
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233709.2
3UTR-3UTR TCA 90 bp CACCCGCCACCCGCCACCCGCCGCCCGTGCCGCGGTGATCATGCTGATGCAGTGGAAGCCCCAAGATCTTaGCACAGGTTTAGACAAGGG +
Preference number: 2 (lower is better)
Translates to: HPPPATRRPCRGDHADAVEAPRS*HRFRQG
Trigger: CCCTTGTCTAAACCTGTGTCAAGATCTTGGGGCTTC...CACTGCATCAGCATGATCACCGCGGCACGGGCGGCGGGTGGCGGGTGGCGGGTG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000004985.11
ENSMUST00000140973.9
ENSMUST00000156029.8
ENSMUST00000232997.2
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233709.2
3UTR-3UTR TCA 90 bp TGCGCAGCATGCGGACACGACGGGTGCGGGCCCCGCTGGACCGCATGGTGCTCAGGCCTTCTAGCATCTTaGGCTTGTCCACAGTGTCCT +
Preference number: 2 (lower is better)
Translates to: CAACGHDGCGPRWTAWCSGLLAS*ACPQCP
Trigger: AGGACACTGTGGACAAGCTCAAGATGCTAGAAGGCC...TGAGCACCATGCGGTCCAGCGGGGCCCGCACCCGTCGTGTCCGCATGCTGCGCA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000232705.2
ENSMUST00000232997.2
3UTR-3UTR GCA 90 bp GGACAGAGGAGAGGCAAAGAAGGCAGACACAGGCCCAGCTCGGCTCTCACAGGTATGGGGACACCGTTGTaGAGGAGGCCCTCCCGGGGC +
Preference number: 2 (lower is better)
Translates to: GQRRGKEGRHRPSSALTGMGTPL*RRPSRG
Trigger: GCCCCGGGAGGGCCTCCTGCACAACGGTGTCCCCAT...ACCTGTGAGAGCCGAGCTGGGCCTGTGTCTGCCTTCTTTGCCTCTCCTCTGTCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000140973.9
ENSMUST00000232705.2
ENSMUST00000233709.2
3UTR-3UTR GCA 90 bp GGCAGCAATCCCAGAGGGCGGGTGCTGGAGGGCAGTGCCATGCCGCACGCCACCGTACTGACTTCCGGATaGTGGTCTTGCGGCCTTCTA +
Preference number: 2 (lower is better)
Translates to: GSNPRGRVLEGSAMPHATVLTSG*WSCGLL
Trigger: TAGAAGGCCGCAAGACCAGCATCCGGAAGTCAGTAC...GGTGGCGTGCGGCATGGCACTGCCCTCCAGCACCCGCCCTCTGGGATTGCTGCC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000140973.9
ENSMUST00000156029.8
ENSMUST00000232997.2
ENSMUST00000233709.2
3UTR-3UTR CCA 90 bp GGAAGGGAAGCTCTGAGGGTTCCCGAGGGACCCTGGCACATCTCTGGGATCAATCCAGAGGGCGGGTGCTaGAGGGCAGTGCCATGCCGC +
Preference number: 2 (lower is better)
Translates to: GREALRVPEGPWHISGINPEGGC*RAVPCR
Trigger: GCGGCATGGCACTGCCCTCCAGCACCCGCCCTCTGG...ATTGATCCCAGAGATGTGCCAGGGTCCCTCGGGAACCCTCAGAGCTTCCCTTCC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000004985.11
ENSMUST00000140973.9
ENSMUST00000156029.8
ENSMUST00000232997.2
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233709.2
3UTR-3UTR CCA 90 bp ACGGGTGCGGGCCCCGCTGGACCGCATGGTGCTCACCAGATCCAGTTTCTCCAGGTGGAGGGACAGGGATaGGGACACCGTTGTGCAGGA +
Preference number: 2 (lower is better)
Translates to: TGAGPAGPHGAHQIQFLQVEGQG*GHRCAG
Trigger: TCCTGCACAACGGTGTCCCCATCCCTGTCCCTCCAC...CTGGAGAAACTGGATCTGGTGAGCACCATGCGGTCCAGCGGGGCCCGCACCCGT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000232705.2
3UTR-3UTR TCA 90 bp AGTCAGGGCCTGCCATTAGAAAGAAGCTGCCGGCCATACACGTGGCAGGGGCAGCCTGCTGGAGGGCTGTaGGTGGGGGAGGGTCCTTAC +
Preference number: 2 (lower is better)
Translates to: SQGLPLERSCRPYTWQGQPAGGL*VGEGPY
Trigger: GTAAGGACCCTCCCCCACTCACAGCCCTCCAGCAGG...CTGCCCCTGCCACGTGTATGGCCGGCAGCTTCTTTCTAATGGCAGGCCCTGACT
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 8 transcripts:
ENSMUST00000004985.11
ENSMUST00000140973.9
ENSMUST00000156029.8
ENSMUST00000232997.2
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233709.2
3UTR-3UTR TCA 90 bp CACCCGCCACCCGCCACCCGCCGCCCGTGCCGCGGTGATCATGCTGATGCAGTGTGGTGGAGAAGAGGTTaGAGGCAGGAGATGAAAGAA +
Preference number: 2 (lower is better)
Translates to: HPPPATRRPCRGDHADAVWWRRG*RQEMKE
Trigger: TTCTTTCATCTCCTGCCTTCAACCTCTTCTCCACCA...CACTGCATCAGCATGATCACCGCGGCACGGGCGGCGGGTGGCGGGTGGCGGGTG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000004985.11
ENSMUST00000140973.9
ENSMUST00000156029.8
ENSMUST00000232997.2
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233709.2
3UTR-3UTR TCA 90 bp GCCCCTCTCAGGATCATAGCCGATGTTCTCTGCCTGCCGCCGGGCGTGCCGCAGAAGGTGTGGTACAGGTaGGATTCCAGCTTCCGCCTC +
Preference number: 2 (lower is better)
Translates to: APLRIIADVLCLPPGVPQKVWYR*DSSFRL
Trigger: GAGGCGGAAGCTGGAATCTCACCTGTACCACACCTT...CTGCGGCACGCCCGGCGGCAGGCAGAGAACATCGGCTATGATCCTGAGAGGGGC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000232705.2
ENSMUST00000232997.2
3UTR-3UTR CCA 90 bp GGGGGAAGGGAAGCTCTGAGGGTTCCCGAGGGACCCTGGCACATCTCTGGGATCCCCCGCTGGACCGCATaGTGCTCACCAGATCCAGTT +
Preference number: 2 (lower is better)
Translates to: GGREALRVPEGPWHISGIPRWTA*CSPDPV
Trigger: AACTGGATCTGGTGAGCACCATGCGGTCCAGCGGGG...GATCCCAGAGATGTGCCAGGGTCCCTCGGGAACCCTCAGAGCTTCCCTTCCCCC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000232705.2
ENSMUST00000232997.2
3UTR CAA 90 bp GTCCCATCGGGACCCCTCTGTAGCTTAACTCCATTCTTGGCCTTCTaGAAGAGGACGGAGGTTCGGCGGCCCACGGTGCCGAGAGGGGTG +
Preference number: 2 (lower is better)
Translates to: VPSGPLCSLTPFLAF*KRTEVRRPTVPRGV
Trigger: CACCCCTCTCGGCACCGTGGGCCGCCGAACCTCCGTCCTCTTCAAGAAGGCCAAGAATGGAGTTAAGCTACAGAGGGGTCCCGATGGGAC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000232705.2
ENSMUST00000232997.2
3UTR-3UTR TCA 90 bp GGAAGGGAAGCTCTGAGGGTTCCCGAGGGACCCTGGCACATCTCTGGGATCAATCCTGCTGGAGGGCTGTaGGTGGGGGAGGGTCCTTAC +
Preference number: 2 (lower is better)
Translates to: GREALRVPEGPWHISGINPAGGL*VGEGPY
Trigger: GTAAGGACCCTCCCCCACTCACAGCCCTCCAGCAGG...ATTGATCCCAGAGATGTGCCAGGGTCCCTCGGGAACCCTCAGAGCTTCCCTTCC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 8 transcripts:
ENSMUST00000004985.11
ENSMUST00000140973.9
ENSMUST00000156029.8
ENSMUST00000232997.2
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233709.2
3UTR-3UTR TCA 90 bp AAGGTAGAAGTCAACATGGCAATTGGCGGTCTGCAAACCCGCCTGCGGCTTTGGCCACCTCCCGTGGGCTaGCCCTGCACCTTGGCCAGG +
Preference number: 2 (lower is better)
Translates to: KVEVNMAIGGLQTRLRLWPPPVG*PCTLAR
Trigger: CCTGGCCAAGGTGCAGGGTCAGCCCACGGGAGGTGG...CCAAAGCCGCAGGCGGGTTTGCAGACCGCCAATTGCCATGTTGACTTCTACCTT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000156029.8
3UTR-3UTR GCA 90 bp CCTTCTAGCATCTTGAGCTTGTCCACAGTGTCCTCCACACCCAGGGGCAGGACTATGGGGACACCGTTGTaGAGGAGGCCCTCCCGGGGC +
Preference number: 2 (lower is better)
Translates to: PSSILSLSTVSSTPRGRTMGTPL*RRPSRG
Trigger: GCCCCGGGAGGGCCTCCTGCACAACGGTGTCCCCAT...AGTCCTGCCCCTGGGTGTGGAGGACACTGTGGACAAGCTCAAGATGCTAGAAGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000140973.9
ENSMUST00000232705.2
ENSMUST00000233709.2
3UTR-3UTR CCA 90 bp GGGAGGGTCCTTACAGGTGGGGTAGCTTCTACCTGGGACTCAAGCGCCTGGCAGGGCCCTCTTGCCTTGTaGGCCAGGTCTATCTCCCTG +
Preference number: 2 (lower is better)
Translates to: GRVLTGGVASTWDSSAWQGPLAL*ARSISL
Trigger: CAGGGAGATAGACCTGGCCCACAAGGCAAGAGGGCC...CTGCCAGGCGCTTGAGTCCCAGGTAGAAGCTACCCCACCTGTAAGGACCCTCCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 10 transcripts:
ENSMUST00000004985.11
ENSMUST00000140973.9
ENSMUST00000156029.8
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
3UTR-3UTR CCA 90 bp GGCCTGCCATTAGAAAGAAGCTGCCGGCCATACACGTGGCAGGGGCAGCAGAGGGGCCCTCTTGCCTTGTaGGCCAGGTCTATCTCCCTG +
Preference number: 2 (lower is better)
Translates to: GLPLERSCRPYTWQGQQRGPLAL*ARSISL
Trigger: CAGGGAGATAGACCTGGCCCACAAGGCAAGAGGGCC...CCTCTGCTGCCCCTGCCACGTGTATGGCCGGCAGCTTCTTTCTAATGGCAGGCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 10 transcripts:
ENSMUST00000004985.11
ENSMUST00000140973.9
ENSMUST00000156029.8
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
3UTR-3UTR CCA 90 bp AGGGTCACAGAGTCCACAGCTGACCAGCTACCTGGGGATAGGGGGACGTGTCGGGGGGTAGCTTCTACCTaGGACTCAAGCGCCTGGCAG +
Preference number: 2 (lower is better)
Translates to: RVTESTADQLPGDRGTCRGVAST*DSSAWQ
Trigger: CTGCCAGGCGCTTGAGTCCCAGGTAGAAGCTACCCC...CCGACACGTCCCCCTATCCCCAGGTAGCTGGTCAGCTGTGGACTCTGTGACCCT
62% GC, longest homopolymer 6 nt, total homopolymer stretches 15 nt.
Matches the following 8 transcripts:
ENSMUST00000004985.11
ENSMUST00000140973.9
ENSMUST00000156029.8
ENSMUST00000232997.2
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233709.2
3UTR-3UTR CCA 90 bp GCCACCCGCCGCCCGTGCCGCGGTGATCATGCTGATGCAGTGAGGCTTATGGCTGAGGGTCCTTACAGGTaGGGTAGCTTCTACCTGGGA +
Preference number: 2 (lower is better)
Translates to: ATRRPCRGDHADAVRLMAEGPYR*GSFYLG
Trigger: TCCCAGGTAGAAGCTACCCCACCTGTAAGGACCCTC...AGCCATAAGCCTCACTGCATCAGCATGATCACCGCGGCACGGGCGGCGGGTGGC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000004985.11
ENSMUST00000140973.9
ENSMUST00000156029.8
ENSMUST00000232997.2
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233709.2
3UTR-3UTR CCA 90 bp CTGCTGGAGGGCTGTGAGTGGGGGAGGGTCCTTACAGGTGGGGTAGCTTCTACCCTGGAGGGCTGTGAGTaGGGGAGGGTCCTTACAGGT +
Preference number: 2 (lower is better)
Translates to: LLEGCEWGRVLTGGVASTLEGCE*GRVLTG
Trigger: ACCTGTAAGGACCCTCCCCCACTCACAGCCCTCCAG...GGTAGAAGCTACCCCACCTGTAAGGACCCTCCCCCACTCACAGCCCTCCAGCAG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 8 transcripts:
ENSMUST00000004985.11
ENSMUST00000140973.9
ENSMUST00000156029.8
ENSMUST00000232997.2
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233709.2
3UTR-3UTR CCA 90 bp TGGGGGAAGGGAAGCTCTGAGGGTTCCCGAGGGACCCTGGCACATCTCTGGGATCTGGAGGGCTGTGAGTaGGGGAGGGTCCTTACAGGT +
Preference number: 2 (lower is better)
Translates to: WGKGSSEGSRGTLAHLWDLEGCE*GRVLTG
Trigger: ACCTGTAAGGACCCTCCCCCACTCACAGCCCTCCAG...ATCCCAGAGATGTGCCAGGGTCCCTCGGGAACCCTCAGAGCTTCCCTTCCCCCA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 8 transcripts:
ENSMUST00000004985.11
ENSMUST00000140973.9
ENSMUST00000156029.8
ENSMUST00000232997.2
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233709.2
3UTR-3UTR CCA 90 bp GTCAACATGGCAATTGGCGGTCTGCAAACCCGCCTGCGGCTTTGGTGCTTAAAGCCAGAGGGCGGGTGCTaGAGGGCAGTGCCATGCCGC +
Preference number: 2 (lower is better)
Translates to: VNMAIGGLQTRLRLWCLKPEGGC*RAVPCR
Trigger: GCGGCATGGCACTGCCCTCCAGCACCCGCCCTCTGG...CTTTAAGCACCAAAGCCGCAGGCGGGTTTGCAGACCGCCAATTGCCATGTTGAC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000004985.11
ENSMUST00000140973.9
ENSMUST00000156029.8
ENSMUST00000232997.2
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233709.2
3UTR CAA 90 bp GCTGAGGGGACCTCTCCCCTTCACTGTCACTACAGCTCCGGCTCCTaGGCCGCTTCCGGGAATAGTGTTCATCCTCTGTGCTGGCTGGAG +
Preference number: 2 (lower is better)
Translates to: AEGTSPLHCHYSSGS*AASGNSVHPLCWLE
Trigger: CTCCAGCCAGCACAGAGGATGAACACTATTCCCGGAAGCGGCCAAGGAGCCGGAGCTGTAGTGACAGTGAAGGGGAGAGGTCCCCTCAGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000232705.2
ENSMUST00000232997.2
3UTR-3UTR TCA 90 bp TGGGGGAAGGGAAGCTCTGAGGGTTCCCGAGGGACCCTGGCACATCTCTGGGATCACAGTCTTGTTCAGTaGCAGGAGCTGTGGTGGCGG +
Preference number: 2 (lower is better)
Translates to: WGKGSSEGSRGTLAHLWDHSLVQ*QELWWR
Trigger: CCGCCACCACAGCTCCTGTCACTGAACAAGACTGTG...ATCCCAGAGATGTGCCAGGGTCCCTCGGGAACCCTCAGAGCTTCCCTTCCCCCA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000232705.2
ENSMUST00000232997.2
3UTR-3UTR GCA 90 bp TGCCGCGGTGATCATGCTGATGCAGTGAGGCTTATGGCTGCTGCAGGAGGGGAGAGTGAGGCTTATGGCTaGTGCAGGAGGGGAGGGCAG +
Preference number: 2 (lower is better)
Translates to: CRGDHADAVRLMAAAGGESEAYG*CRRGGQ
Trigger: CTGCCCTCCCCTCCTGCAGCAGCCATAAGCCTCACT...CTCCCCTCCTGCAGCAGCCATAAGCCTCACTGCATCAGCATGATCACCGCGGCA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 8 transcripts:
ENSMUST00000004985.11
ENSMUST00000140973.9
ENSMUST00000156029.8
ENSMUST00000232997.2
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233709.2
3UTR-3UTR GCA 90 bp AGTCAGGGCCTGCCATTAGAAAGAAGCTGCCGGCCATACACGTGGCAGGGGCAGAGTGAGGCTTATGGCTaGTGCAGGAGGGGAGGGCAG +
Preference number: 2 (lower is better)
Translates to: SQGLPLERSCRPYTWQGQSEAYG*CRRGGQ
Trigger: CTGCCCTCCCCTCCTGCAGCAGCCATAAGCCTCACT...CTGCCCCTGCCACGTGTATGGCCGGCAGCTTCTTTCTAATGGCAGGCCCTGACT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 8 transcripts:
ENSMUST00000004985.11
ENSMUST00000140973.9
ENSMUST00000156029.8
ENSMUST00000232997.2
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233709.2
3UTR-3UTR GCA 90 bp GGGGGAAGGGAAGCTCTGAGGGTTCCCGAGGGACCCTGGCACATCTCTGGGATCCGCTGGACCGCATGGTaGTCACCAGATCCAGTTTCT +
Preference number: 2 (lower is better)
Translates to: GGREALRVPEGPWHISGIRWTAW*SPDPVS
Trigger: AGAAACTGGATCTGGTGAGCACCATGCGGTCCAGCG...GATCCCAGAGATGTGCCAGGGTCCCTCGGGAACCCTCAGAGCTTCCCTTCCCCC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000232705.2
ENSMUST00000232997.2
3UTR-3UTR CCA 90 bp AGTCAGGGCCTGCCATTAGAAAGAAGCTGCCGGCCATACACGTGGCAGGGGCAGCTGGAGGGCTGTGAGTaGGGGAGGGTCCTTACAGGT +
Preference number: 2 (lower is better)
Translates to: SQGLPLERSCRPYTWQGQLEGCE*GRVLTG
Trigger: ACCTGTAAGGACCCTCCCCCACTCACAGCCCTCCAG...CTGCCCCTGCCACGTGTATGGCCGGCAGCTTCTTTCTAATGGCAGGCCCTGACT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 8 transcripts:
ENSMUST00000004985.11
ENSMUST00000140973.9
ENSMUST00000156029.8
ENSMUST00000232997.2
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233709.2
3UTR-3UTR CCA 90 bp GGGAACCACATGATTGGTCAATATTGGGTCTTGCCCTCGGAGACCCAGTCCAGTCCAGAGGGCGGGTGCTaGAGGGCAGTGCCATGCCGC +
Preference number: 2 (lower is better)
Translates to: GNHMIGQYWVLPSETQSSPEGGC*RAVPCR
Trigger: GCGGCATGGCACTGCCCTCCAGCACCCGCCCTCTGG...ACTGGACTGGGTCTCCGAGGGCAAGACCCAATATTGACCAATCATGTGGTTCCC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000004985.11
ENSMUST00000140973.9
ENSMUST00000156029.8
ENSMUST00000232997.2
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233709.2
3UTR CAA 90 bp CCACAGCTGACCAGCTACCTGGGGATAGGGGGACGTGTCGGCTCCTaGATTAGGCTGTGCAGCATGGATGCACAAGGGAGGGTTCCGGTA +
Preference number: 2 (lower is better)
Translates to: PQLTSYLGIGGRVGS*IRLCSMDAQGRVPV
Trigger: TACCGGAACCCTCCCTTGTGCATCCATGCTGCACAGCCTAATCAAGGAGCCGACACGTCCCCCTATCCCCAGGTAGCTGGTCAGCTGTGG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 8 transcripts:
ENSMUST00000004985.11
ENSMUST00000140973.9
ENSMUST00000156029.8
ENSMUST00000232997.2
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233709.2
3UTR CAA 90 bp TTCTCAAGGGTCCCATCGGGACCCCTCTGTAGCTTAACTCCATTCTaGGCCTTCTTGAAGAGGACGGAGGTTCGGCGGCCCACGGTGCCG +
Preference number: 2 (lower is better)
Translates to: FSRVPSGPLCSLTPF*AFLKRTEVRRPTVP
Trigger: CGGCACCGTGGGCCGCCGAACCTCCGTCCTCTTCAAGAAGGCCAAGAATGGAGTTAAGCTACAGAGGGGTCCCGATGGGACCCTTGAGAA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000232705.2
ENSMUST00000232997.2
3UTR-3UTR TCA 90 bp CCCGAGATCCTGCTGGCAGCTCCCCGTTGGGCACAGTCTTGTTCAGTGACAGGAGAACCTTGCCTGCCCTaGGGTATGGTTAGGTGGGAG +
Preference number: 2 (lower is better)
Translates to: PEILLAAPRWAQSCSVTGEPCLP*GMVRWE
Trigger: CTCCCACCTAACCATACCTCAGGGCAGGCAAGGTTC...TCCTGTCACTGAACAAGACTGTGCCCAACGGGGAGCTGCCAGCAGGATCTCGGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000232705.2
ENSMUST00000232997.2
3UTR-3UTR TCA 90 bp CAGAGGAGAGGCAAAGAAGGCAGACACAGGCCCAGCTCGGCTCTCACAGGTAGCGAACCTTGCCTGCCCTaGGGTATGGTTAGGTGGGAG +
Preference number: 2 (lower is better)
Translates to: QRRGKEGRHRPSSALTGSEPCLP*GMVRWE
Trigger: CTCCCACCTAACCATACCTCAGGGCAGGCAAGGTTC...GCTACCTGTGAGAGCCGAGCTGGGCCTGTGTCTGCCTTCTTTGCCTCTCCTCTG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000140973.9
ENSMUST00000156029.8
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233701.2
ENSMUST00000233709.2
3UTR-3UTR TCA 90 bp CACCCGCCACCCGCCACCCGCCGCCCGTGCCGCGGTGATCATGCTGATGCAGTGAAAAGATCAATTTGGTaGTGTTGCTGTCAGTTTGGC +
Preference number: 2 (lower is better)
Translates to: HPPPATRRPCRGDHADAVKRSIW*CCCQFG
Trigger: GCCAAACTGACAGCAACATCACCAAATTGATCTTTT...CACTGCATCAGCATGATCACCGCGGCACGGGCGGCGGGTGGCGGGTGGCGGGTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000004985.11
ENSMUST00000140973.9
ENSMUST00000156029.8
ENSMUST00000232997.2
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233709.2
3UTR-3UTR TCA 90 bp TCACAGAGTCCACAGCTGACCAGCTACCTGGGGATAGGGGGACGTGTCGGCTCCACAGGTAGCTGGAAGTaGCAAAGGCATGGGAGCCAC +
Preference number: 2 (lower is better)
Translates to: SQSPQLTSYLGIGGRVGSTGSWK*QRHGSH
Trigger: GTGGCTCCCATGCCTTTGTCACTTCCAGCTACCTGT...GGAGCCGACACGTCCCCCTATCCCCAGGTAGCTGGTCAGCTGTGGACTCTGTGA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000140973.9
ENSMUST00000156029.8
ENSMUST00000232997.2
ENSMUST00000233709.2
3UTR-3UTR TCA 90 bp GGGAGGGTCCTTACAGGTGGGGTAGCTTCTACCTGGGACTCAAGCGCCTGGCAGAAGGTTTGCTGTCGCTaGTGGGTTTCAGGGTTGGGG +
Preference number: 2 (lower is better)
Translates to: GRVLTGGVASTWDSSAWQKVCCR*WVSGLG
Trigger: CCCCAACCCTGAAACCCATCAGCGACAGCAAACCTT...CTGCCAGGCGCTTGAGTCCCAGGTAGAAGCTACCCCACCTGTAAGGACCCTCCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000232705.2
ENSMUST00000232997.2
3UTR-3UTR GCA 90 bp AGGGTCCTTACAGGTGGGGTAGCTTCTACCTGGGACTCAAGCGCCTGGCAGACAAGTGAGGCTTATGGCTaGTGCAGGAGGGGAGGGCAG +
Preference number: 2 (lower is better)
Translates to: RVLTGGVASTWDSSAWQTSEAYG*CRRGGQ
Trigger: CTGCCCTCCCCTCCTGCAGCAGCCATAAGCCTCACT...TGTCTGCCAGGCGCTTGAGTCCCAGGTAGAAGCTACCCCACCTGTAAGGACCCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 8 transcripts:
ENSMUST00000004985.11
ENSMUST00000140973.9
ENSMUST00000156029.8
ENSMUST00000232997.2
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233709.2
3UTR-3UTR CCA 90 bp TGGGGGAGGGTCCTTACAGGTGGGGTAGCTTCTACCTGGGACTCAAGCGCCTGGGTTCCCGAGGGACCCTaGCACATCTCTGGGATCAAT +
Preference number: 2 (lower is better)
Translates to: WGRVLTGGVASTWDSSAWVPEGP*HISGIN
Trigger: ATTGATCCCAGAGATGTGCCAGGGTCCCTCGGGAAC...CCAGGCGCTTGAGTCCCAGGTAGAAGCTACCCCACCTGTAAGGACCCTCCCCCA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 10 transcripts:
ENSMUST00000004985.11
ENSMUST00000140973.9
ENSMUST00000156029.8
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
3UTR-3UTR CCA 90 bp CTGCTGGAGGGCTGTGAGTGGGGGAGGGTCCTTACAGGTGGGGTAGCTTCTACCGTTCCCGAGGGACCCTaGCACATCTCTGGGATCAAT +
Preference number: 2 (lower is better)
Translates to: LLEGCEWGRVLTGGVASTVPEGP*HISGIN
Trigger: ATTGATCCCAGAGATGTGCCAGGGTCCCTCGGGAAC...GGTAGAAGCTACCCCACCTGTAAGGACCCTCCCCCACTCACAGCCCTCCAGCAG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 8 transcripts:
ENSMUST00000004985.11
ENSMUST00000140973.9
ENSMUST00000156029.8
ENSMUST00000232997.2
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233709.2
3UTR-3UTR CCA 90 bp GGGACTCAAGCGCCTGGCAGACATCCATCTAATGTAGCAGCTGGCCAGGAAGGACAAGCACGGGCGGTGTaGGGGAAGGGAAGCTCTGAG +
Preference number: 2 (lower is better)
Translates to: GTQAPGRHPSNVAAGQEGQARAV*GKGSSE
Trigger: CTCAGAGCTTCCCTTCCCCCACACCGCCCGTGCTTG...TCCTTCCTGGCCAGCTGCTACATTAGATGGATGTCTGCCAGGCGCTTGAGTCCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 10 transcripts:
ENSMUST00000004985.11
ENSMUST00000140973.9
ENSMUST00000156029.8
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
3UTR-3UTR CCA 90 bp TCACAGAGTCCACAGCTGACCAGCTACCTGGGGATAGGGGGACGTGTCGGCTCCAGGGAGAACCTGGGTTaGGTGTGGGAGATGAGACAG +
Preference number: 2 (lower is better)
Translates to: SQSPQLTSYLGIGGRVGSRENLG*VWEMRQ
Trigger: CTGTCTCATCTCCCACACCCAACCCAGGTTCTCCCT...GGAGCCGACACGTCCCCCTATCCCCAGGTAGCTGGTCAGCTGTGGACTCTGTGA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 8 transcripts:
ENSMUST00000004985.11
ENSMUST00000140973.9
ENSMUST00000156029.8
ENSMUST00000232997.2
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233709.2
3UTR-3UTR CCA 90 bp TGGGGGAGGGTCCTTACAGGTGGGGTAGCTTCTACCTGGGACTCAAGCGCCTGGAGGGAGAACCTGGGTTaGGTGTGGGAGATGAGACAG +
Preference number: 2 (lower is better)
Translates to: WGRVLTGGVASTWDSSAWRENLG*VWEMRQ
Trigger: CTGTCTCATCTCCCACACCCAACCCAGGTTCTCCCT...CCAGGCGCTTGAGTCCCAGGTAGAAGCTACCCCACCTGTAAGGACCCTCCCCCA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 10 transcripts:
ENSMUST00000004985.11
ENSMUST00000140973.9
ENSMUST00000156029.8
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
3UTR-3UTR CCA 90 bp AGGGTCACAGAGTCCACAGCTGACCAGCTACCTGGGGATAGGGGGACGTGTCGGAGGGAGAACCTGGGTTaGGTGTGGGAGATGAGACAG +
Preference number: 2 (lower is better)
Translates to: RVTESTADQLPGDRGTCRRENLG*VWEMRQ
Trigger: CTGTCTCATCTCCCACACCCAACCCAGGTTCTCCCT...CCGACACGTCCCCCTATCCCCAGGTAGCTGGTCAGCTGTGGACTCTGTGACCCT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 8 transcripts:
ENSMUST00000004985.11
ENSMUST00000140973.9
ENSMUST00000156029.8
ENSMUST00000232997.2
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233709.2
3UTR-3UTR CCA 90 bp TGGGGGAGGGTCCTTACAGGTGGGGTAGCTTCTACCTGGGACTCAAGCGCCTGGGAGGGTCCTTACAGGTaGGGTAGCTTCTACCTGGGA +
Preference number: 2 (lower is better)
Translates to: WGRVLTGGVASTWDSSAWEGPYR*GSFYLG
Trigger: TCCCAGGTAGAAGCTACCCCACCTGTAAGGACCCTC...CCAGGCGCTTGAGTCCCAGGTAGAAGCTACCCCACCTGTAAGGACCCTCCCCCA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 10 transcripts:
ENSMUST00000004985.11
ENSMUST00000140973.9
ENSMUST00000156029.8
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
3UTR-3UTR CCA 90 bp ATGTCAAGAGCAGAAGCCTCTGAGAGCTGCGTTGGCTTGTCAGTCAGCTTTCCTCCAGAGGGCGGGTGCTaGAGGGCAGTGCCATGCCGC +
Preference number: 2 (lower is better)
Translates to: MSRAEASESCVGLSVSFPPEGGC*RAVPCR
Trigger: GCGGCATGGCACTGCCCTCCAGCACCCGCCCTCTGG...AGGAAAGCTGACTGACAAGCCAACGCAGCTCTCAGAGGCTTCTGCTCTTGACAT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000004985.11
ENSMUST00000140973.9
ENSMUST00000156029.8
ENSMUST00000232997.2
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233709.2
3UTR-3UTR CCA 90 bp CAGAGGAGAGGCAAAGAAGGCAGACACAGGCCCAGCTCGGCTCTCACAGGTAGCGGCTCAGGTGGATCATaGCGCGGTCATAGGCCACTT +
Preference number: 2 (lower is better)
Translates to: QRRGKEGRHRPSSALTGSGSGGS*RGHRPL
Trigger: AAGTGGCCTATGACCGCGCCATGATCCACCTGAGCC...GCTACCTGTGAGAGCCGAGCTGGGCCTGTGTCTGCCTTCTTTGCCTCTCCTCTG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000140973.9
ENSMUST00000156029.8
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233701.2
ENSMUST00000233709.2
3UTR-3UTR CCA 90 bp GGGCGGTGTGGGGGAAGGGAAGCTCTGAGGGTTCCCGAGGGACCCTGGCACATCCGGACAGCTGCTCGGTaGAAAATTGTGTCTTTAGCA +
Preference number: 2 (lower is better)
Translates to: GRCGGREALRVPEGPWHIRTAAR*KIVSLA
Trigger: TGCTAAAGACACAATTTTCCACCGAGCAGCTGTCCG...GATGTGCCAGGGTCCCTCGGGAACCCTCAGAGCTTCCCTTCCCCCACACCGCCC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000232705.2
ENSMUST00000232997.2
3UTR-3UTR CCA 90 bp AGGATCGTCCTCTGGGCCATGGTCCTCGCCATTCTCAAGGGTCCCATCGGGACCGATGGGTTTCAGGGTTaGGGGATCTGGAGGGGATTC +
Preference number: 2 (lower is better)
Translates to: RIVLWAMVLAILKGPIGTDGFQG*GIWRGF
Trigger: GAATCCCCTCCAGATCCCCCAACCCTGAAACCCATC...GGTCCCGATGGGACCCTTGAGAATGGCGAGGACCATGGCCCAGAGGACGATCCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000232705.2
ENSMUST00000232997.2
3UTR-3UTR TCA 90 bp CGAGGGACCCTGGCACATCTCTGGGATCAATGTCAGAACCTTGCCTGCCCTGAGGAACCTTGCCTGCCCTaGGGTATGGTTAGGTGGGAG +
Preference number: 2 (lower is better)
Translates to: RGTLAHLWDQCQNLACPEEPCLP*GMVRWE
Trigger: CTCCCACCTAACCATACCTCAGGGCAGGCAAGGTTC...CTCAGGGCAGGCAAGGTTCTGACATTGATCCCAGAGATGTGCCAGGGTCCCTCG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 10 transcripts:
ENSMUST00000004985.11
ENSMUST00000140973.9
ENSMUST00000156029.8
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
3UTR-3UTR TCA 90 bp GCCCTGTGCCACAGCAGATCCGAGCCGCATCCTGTCCTAAAAGAGCAGTTTTTACCTGCTGGAGGGCTGTaGGTGGGGGAGGGTCCTTAC +
Preference number: 2 (lower is better)
Translates to: ALCHSRSEPHPVLKEQFLPAGGL*VGEGPY
Trigger: GTAAGGACCCTCCCCCACTCACAGCCCTCCAGCAGG...TAAAAACTGCTCTTTTAGGACAGGATGCGGCTCGGATCTGCTGTGGCACAGGGC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 8 transcripts:
ENSMUST00000004985.11
ENSMUST00000140973.9
ENSMUST00000156029.8
ENSMUST00000232997.2
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233709.2
3UTR-3UTR TCA 90 bp CTGACCAGCTACCTGGGGATAGGGGGACGTGTCGGCTCCTTGATTAGGCTGTGCACAGGTAGCTGGAAGTaGCAAAGGCATGGGAGCCAC +
Preference number: 2 (lower is better)
Translates to: LTSYLGIGGRVGSLIRLCTGSWK*QRHGSH
Trigger: GTGGCTCCCATGCCTTTGTCACTTCCAGCTACCTGT...GCACAGCCTAATCAAGGAGCCGACACGTCCCCCTATCCCCAGGTAGCTGGTCAG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000140973.9
ENSMUST00000156029.8
ENSMUST00000232997.2
ENSMUST00000233709.2
3UTR-3UTR GCA 90 bp CAAGCGCCTGGCAGACATCCATCTAATGTAGCAGCTGGCCAGGAAGGAAATGGGGAGGCTTATGGCTGCTaGAGGAGGGGAGGGCAGCAG +
Preference number: 2 (lower is better)
Translates to: QAPGRHPSNVAAGQEGNGEAYGC*RRGGQQ
Trigger: CTGCTGCCCTCCCCTCCTGCAGCAGCCATAAGCCTC...CCCATTTCCTTCCTGGCCAGCTGCTACATTAGATGGATGTCTGCCAGGCGCTTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 8 transcripts:
ENSMUST00000004985.11
ENSMUST00000140973.9
ENSMUST00000156029.8
ENSMUST00000232997.2
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233709.2
3UTR-3UTR GCA 90 bp GGGAACCACATGATTGGTCAATATTGGGTCTTGCCCTCGGAGACCCAGTCCAGTATCCCAGAGGGCGGGTaGTGGAGGGCAGTGCCATGC +
Preference number: 2 (lower is better)
Translates to: GNHMIGQYWVLPSETQSSIPEGG*WRAVPC
Trigger: GCATGGCACTGCCCTCCAGCACCCGCCCTCTGGGAT...ACTGGACTGGGTCTCCGAGGGCAAGACCCAATATTGACCAATCATGTGGTTCCC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000004985.11
ENSMUST00000140973.9
ENSMUST00000156029.8
ENSMUST00000232997.2
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233709.2
3UTR-3UTR GCA 90 bp AACCTTGCCTGCCCTGAGGTATGGTTAGGTGGGAGAGACATGGAGAGAGCCGGCCCGGAGGCGGACAGCTaGTCGGTGGAAAATTGTGTC +
Preference number: 2 (lower is better)
Translates to: NLACPEVWLGGRDMERAGPEADS*SVENCV
Trigger: GACACAATTTTCCACCGAGCAGCTGTCCGCCTCCGG...GCCGGCTCTCTCCATGTCTCTCCCACCTAACCATACCTCAGGGCAGGCAAGGTT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000232705.2
ENSMUST00000232997.2
3UTR-3UTR CCA 90 bp GCCACCCGCCGCCCGTGCCGCGGTGATCATGCTGATGCAGTGAGGCTTATGGCTGGGGAACCACATGATTaGTCAATATTGGGTCTTGCC +
Preference number: 2 (lower is better)
Translates to: ATRRPCRGDHADAVRLMAGEPHD*SILGLA
Trigger: GGCAAGACCCAATATTGACCAATCATGTGGTTCCCC...AGCCATAAGCCTCACTGCATCAGCATGATCACCGCGGCACGGGCGGCGGGTGGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000004985.11
ENSMUST00000140973.9
ENSMUST00000156029.8
ENSMUST00000232997.2
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233709.2
3UTR-3UTR CCA 90 bp GGGGGAAGGGAAGCTCTGAGGGTTCCCGAGGGACCCTGGCACATCTCTGGGATCGTCTATCTCCCTGGCTaGCTAAGACTCTCAGCTGTT +
Preference number: 2 (lower is better)
Translates to: GGREALRVPEGPWHISGIVYLPG*LRLSAV
Trigger: AACAGCTGAGAGTCTTAGCCAGCCAGGGAGATAGAC...GATCCCAGAGATGTGCCAGGGTCCCTCGGGAACCCTCAGAGCTTCCCTTCCCCC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 10 transcripts:
ENSMUST00000004985.11
ENSMUST00000140973.9
ENSMUST00000156029.8
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
3UTR-3UTR CCA 90 bp AAGGGAAGCTCTGAGGGTTCCCGAGGGACCCTGGCACATCTCTGGGATCAATGTGGCCCTCTTGCCTTGTaGGCCAGGTCTATCTCCCTG +
Preference number: 2 (lower is better)
Translates to: KGSSEGSRGTLAHLWDQCGPLAL*ARSISL
Trigger: CAGGGAGATAGACCTGGCCCACAAGGCAAGAGGGCC...ACATTGATCCCAGAGATGTGCCAGGGTCCCTCGGGAACCCTCAGAGCTTCCCTT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 10 transcripts:
ENSMUST00000004985.11
ENSMUST00000140973.9
ENSMUST00000156029.8
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
3UTR-3UTR CCA 90 bp TACAGTTATGTACACCACGCCCTGTCCCGCGTGGCTGTGCTGTTTGCTGGACAGGGCCCTCTTGCCTTGTaGGCCAGGTCTATCTCCCTG +
Preference number: 2 (lower is better)
Translates to: YSYVHHALSRVAVLFAGQGPLAL*ARSISL
Trigger: CAGGGAGATAGACCTGGCCCACAAGGCAAGAGGGCC...CTGTCCAGCAAACAGCACAGCCACGCGGGACAGGGCGTGGTGTACATAACTGTA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000004985.11
ENSMUST00000140973.9
ENSMUST00000156029.8
ENSMUST00000232997.2
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233709.2
3UTR-3UTR CCA 90 bp GAGGGTCCTTACAGGTGGGGTAGCTTCTACCTGGGACTCAAGCGCCTGGCAGACGTTCCCGAGGGACCCTaGCACATCTCTGGGATCAAT +
Preference number: 2 (lower is better)
Translates to: EGPYRWGSFYLGLKRLADVPEGP*HISGIN
Trigger: ATTGATCCCAGAGATGTGCCAGGGTCCCTCGGGAAC...GTCTGCCAGGCGCTTGAGTCCCAGGTAGAAGCTACCCCACCTGTAAGGACCCTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 10 transcripts:
ENSMUST00000004985.11
ENSMUST00000140973.9
ENSMUST00000156029.8
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
3UTR-3UTR CCA 90 bp CAAGCGCCTGGCAGACATCCATCTAATGTAGCAGCTGGCCAGGAAGGAAATGGGCAAGCACGGGCGGTGTaGGGGAAGGGAAGCTCTGAG +
Preference number: 2 (lower is better)
Translates to: QAPGRHPSNVAAGQEGNGQARAV*GKGSSE
Trigger: CTCAGAGCTTCCCTTCCCCCACACCGCCCGTGCTTG...CCCATTTCCTTCCTGGCCAGCTGCTACATTAGATGGATGTCTGCCAGGCGCTTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 10 transcripts:
ENSMUST00000004985.11
ENSMUST00000140973.9
ENSMUST00000156029.8
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
3UTR-3UTR CCA 90 bp GGACCCTGGCACATCTCTGGGATCAATGTCAGAACCTTGCCTGCCCTGAGGTATCAAGCACGGGCGGTGTaGGGGAAGGGAAGCTCTGAG +
Preference number: 2 (lower is better)
Translates to: GPWHISGINVRTLPALRYQARAV*GKGSSE
Trigger: CTCAGAGCTTCCCTTCCCCCACACCGCCCGTGCTTG...ATACCTCAGGGCAGGCAAGGTTCTGACATTGATCCCAGAGATGTGCCAGGGTCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 10 transcripts:
ENSMUST00000004985.11
ENSMUST00000140973.9
ENSMUST00000156029.8
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
3UTR-3UTR CCA 90 bp GGGACCCTGGCACATCTCTGGGATCAATGTCAGAACCTTGCCTGCCCTGAGGTACTGGAGGGCTGTGAGTaGGGGAGGGTCCTTACAGGT +
Preference number: 2 (lower is better)
Translates to: GTLAHLWDQCQNLACPEVLEGCE*GRVLTG
Trigger: ACCTGTAAGGACCCTCCCCCACTCACAGCCCTCCAG...TACCTCAGGGCAGGCAAGGTTCTGACATTGATCCCAGAGATGTGCCAGGGTCCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000004985.11
ENSMUST00000140973.9
ENSMUST00000156029.8
ENSMUST00000232997.2
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233709.2
3UTR-3UTR CCA 90 bp AGGGTCACAGAGTCCACAGCTGACCAGCTACCTGGGGATAGGGGGACGTGTCGGAGTCAACATGGCAATTaGCGGTCTGCAAACCCGCCT +
Preference number: 2 (lower is better)
Translates to: RVTESTADQLPGDRGTCRSQHGN*RSANPP
Trigger: AGGCGGGTTTGCAGACCGCCAATTGCCATGTTGACT...CCGACACGTCCCCCTATCCCCAGGTAGCTGGTCAGCTGTGGACTCTGTGACCCT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 8 transcripts:
ENSMUST00000004985.11
ENSMUST00000140973.9
ENSMUST00000156029.8
ENSMUST00000232997.2
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233709.2
3UTR-3UTR CCA 90 bp GGCCTGCCATTAGAAAGAAGCTGCCGGCCATACACGTGGCAGGGGCAGCAGAGGAGTCAACATGGCAATTaGCGGTCTGCAAACCCGCCT +
Preference number: 2 (lower is better)
Translates to: GLPLERSCRPYTWQGQQRSQHGN*RSANPP
Trigger: AGGCGGGTTTGCAGACCGCCAATTGCCATGTTGACT...CCTCTGCTGCCCCTGCCACGTGTATGGCCGGCAGCTTCTTTCTAATGGCAGGCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000004985.11
ENSMUST00000140973.9
ENSMUST00000156029.8
ENSMUST00000232997.2
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233709.2
3UTR-3UTR CCA 90 bp TACAGTTATGTACACCACGCCCTGTCCCGCGTGGCTGTGCTGTTTGCTGGACAGGCCTCTGGGGACAGATaGGCCCGGTTCTCTGGGATA +
Preference number: 2 (lower is better)
Translates to: YSYVHHALSRVAVLFAGQASGDR*ARFSGI
Trigger: TATCCCAGAGAACCGGGCCCATCTGTCCCCAGAGGC...CTGTCCAGCAAACAGCACAGCCACGCGGGACAGGGCGTGGTGTACATAACTGTA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000232997.2
3UTR CAA 90 bp TTGGCACACAGCAGCCCTCCAGGGGAACCACATGATTGGTCAATATaGGGTCTTGCCCTCGGAGACCCAGTCCAGTCAGGGCCTGCCATT +
Preference number: 2 (lower is better)
Translates to: LAHSSPPGEPHDWSI*GLALGDPVQSGPAI
Trigger: AATGGCAGGCCCTGACTGGACTGGGTCTCCGAGGGCAAGACCCAATATTGACCAATCATGTGGTTCCCCTGGAGGGCTGCTGTGTGCCAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 10 transcripts:
ENSMUST00000004985.11
ENSMUST00000140973.9
ENSMUST00000156029.8
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
3UTR-3UTR TCA 90 bp GGGACCCTGGCACATCTCTGGGATCAATGTCAGAACCTTGCCTGCCCTGAGGTAGAACCTTGCCTGCCCTaGGGTATGGTTAGGTGGGAG +
Preference number: 2 (lower is better)
Translates to: GTLAHLWDQCQNLACPEVEPCLP*GMVRWE
Trigger: CTCCCACCTAACCATACCTCAGGGCAGGCAAGGTTC...TACCTCAGGGCAGGCAAGGTTCTGACATTGATCCCAGAGATGTGCCAGGGTCCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 10 transcripts:
ENSMUST00000004985.11
ENSMUST00000140973.9
ENSMUST00000156029.8
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
3UTR-3UTR TCA 90 bp CTGCTGGAGGGCTGTGAGTGGGGGAGGGTCCTTACAGGTGGGGTAGCTTCTACCATAGGCCACTTGTACTaGCTTCCGGATGCTGGTCTT +
Preference number: 2 (lower is better)
Translates to: LLEGCEWGRVLTGGVASTIGHLY*LPDAGL
Trigger: AAGACCAGCATCCGGAAGTCAGTACAAGTGGCCTAT...GGTAGAAGCTACCCCACCTGTAAGGACCCTCCCCCACTCACAGCCCTCCAGCAG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000140973.9
ENSMUST00000156029.8
ENSMUST00000232997.2
ENSMUST00000233709.2
3UTR-3UTR TCA 90 bp GCAAAGAAGGCAGACACAGGCCCAGCTCGGCTCTCACAGGTAGCTGGAAGTGACAAGGTGTGGTACAGGTaGGATTCCAGCTTCCGCCTC +
Preference number: 2 (lower is better)
Translates to: AKKADTGPARLSQVAGSDKVWYR*DSSFRL
Trigger: GAGGCGGAAGCTGGAATCTCACCTGTACCACACCTT...GTCACTTCCAGCTACCTGTGAGAGCCGAGCTGGGCCTGTGTCTGCCTTCTTTGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000232705.2
ENSMUST00000232997.2
3UTR-3UTR GCA 90 bp CAGTCCAGTCAGGGCCTGCCATTAGAAAGAAGCTGCCGGCCATACACGTGGCAGCAGCAGAGGTTCTCATaGCTCAGGGACAGAGGAGAG +
Preference number: 2 (lower is better)
Translates to: QSSQGLPLERSCRPYTWQQQRFS*LRDRGE
Trigger: CTCTCCTCTGTCCCTGAGGCATGAGAACCTCTGCTG...CTGCCACGTGTATGGCCGGCAGCTTCTTTCTAATGGCAGGCCCTGACTGGACTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 11 transcripts:
ENSMUST00000004985.11
ENSMUST00000140587.9
ENSMUST00000140973.9
ENSMUST00000156029.8
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
3UTR-3UTR GCA 90 bp CTGACCAGCTACCTGGGGATAGGGGGACGTGTCGGCTCCTTGATTAGGCTGTGCCCATTAGAAAGAAGCTaGCGGCCATACACGTGGCAG +
Preference number: 2 (lower is better)
Translates to: LTSYLGIGGRVGSLIRLCPLERS*RPYTWQ
Trigger: CTGCCACGTGTATGGCCGGCAGCTTCTTTCTAATGG...GCACAGCCTAATCAAGGAGCCGACACGTCCCCCTATCCCCAGGTAGCTGGTCAG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 8 transcripts:
ENSMUST00000004985.11
ENSMUST00000140973.9
ENSMUST00000156029.8
ENSMUST00000232997.2
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233709.2
3UTR-3UTR GCA 90 bp ATGTCAAGAGCAGAAGCCTCTGAGAGCTGCGTTGGCTTGTCAGTCAGCTTTCCTATCCCAGAGGGCGGGTaGTGGAGGGCAGTGCCATGC +
Preference number: 2 (lower is better)
Translates to: MSRAEASESCVGLSVSFPIPEGG*WRAVPC
Trigger: GCATGGCACTGCCCTCCAGCACCCGCCCTCTGGGAT...AGGAAAGCTGACTGACAAGCCAACGCAGCTCTCAGAGGCTTCTGCTCTTGACAT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000004985.11
ENSMUST00000140973.9
ENSMUST00000156029.8
ENSMUST00000232997.2
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233709.2
3UTR-3UTR GCA 90 bp AAGGTAGAAGTCAACATGGCAATTGGCGGTCTGCAAACCCGCCTGCGGCTTTGGTCTCCAGCCTCTGCCTaGTTCTGCTCGCCCAGCTTC +
Preference number: 2 (lower is better)
Translates to: KVEVNMAIGGLQTRLRLWSPASA*FCSPSF
Trigger: GAAGCTGGGCGAGCAGAAGCAGGCAGAGGCTGGAGA...CCAAAGCCGCAGGCGGGTTTGCAGACCGCCAATTGCCATGTTGACTTCTACCTT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000140973.9
ENSMUST00000233709.2
3UTR-3UTR GCA 90 bp GGACCCTGGCACATCTCTGGGATCAATGTCAGAACCTTGCCTGCCCTGAGGTATTCTCCAGCCTCTGCCTaGTTCTGCTCGCCCAGCTTC +
Preference number: 2 (lower is better)
Translates to: GPWHISGINVRTLPALRYSPASA*FCSPSF
Trigger: GAAGCTGGGCGAGCAGAAGCAGGCAGAGGCTGGAGA...ATACCTCAGGGCAGGCAAGGTTCTGACATTGATCCCAGAGATGTGCCAGGGTCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000140973.9
ENSMUST00000232705.2
ENSMUST00000233709.2
3UTR-3UTR CCA 90 bp TCCCGAGGGACCCTGGCACATCTCTGGGATCAATGTCAGAACCTTGCCTGCCCTGTTCCCGAGGGACCCTaGCACATCTCTGGGATCAAT +
Preference number: 2 (lower is better)
Translates to: SRGTLAHLWDQCQNLACPVPEGP*HISGIN
Trigger: ATTGATCCCAGAGATGTGCCAGGGTCCCTCGGGAAC...AGGGCAGGCAAGGTTCTGACATTGATCCCAGAGATGTGCCAGGGTCCCTCGGGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 10 transcripts:
ENSMUST00000004985.11
ENSMUST00000140973.9
ENSMUST00000156029.8
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
3UTR-3UTR CCA 90 bp TCCCGAGGGACCCTGGCACATCTCTGGGATCAATGTCAGAACCTTGCCTGCCCTAGGGAGAACCTGGGTTaGGTGTGGGAGATGAGACAG +
Preference number: 2 (lower is better)
Translates to: SRGTLAHLWDQCQNLACPRENLG*VWEMRQ
Trigger: CTGTCTCATCTCCCACACCCAACCCAGGTTCTCCCT...AGGGCAGGCAAGGTTCTGACATTGATCCCAGAGATGTGCCAGGGTCCCTCGGGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 10 transcripts:
ENSMUST00000004985.11
ENSMUST00000140973.9
ENSMUST00000156029.8
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
3UTR-3UTR CCA 90 bp ATGATTGGTCAATATTGGGTCTTGCCCTCGGAGACCCAGTCCAGTCAGGGCCTGGGGGTAGCTTCTACCTaGGACTCAAGCGCCTGGCAG +
Preference number: 2 (lower is better)
Translates to: MIGQYWVLPSETQSSQGLGVAST*DSSAWQ
Trigger: CTGCCAGGCGCTTGAGTCCCAGGTAGAAGCTACCCC...CAGGCCCTGACTGGACTGGGTCTCCGAGGGCAAGACCCAATATTGACCAATCAT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 10 transcripts:
ENSMUST00000004985.11
ENSMUST00000140973.9
ENSMUST00000156029.8
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
3UTR-3UTR CCA 90 bp GCGCCTGGCAGACATCCATCTAATGTAGCAGCTGGCCAGGAAGGAAATGGGACAGGGGTAGCTTCTACCTaGGACTCAAGCGCCTGGCAG +
Preference number: 2 (lower is better)
Translates to: APGRHPSNVAAGQEGNGTGVAST*DSSAWQ
Trigger: CTGCCAGGCGCTTGAGTCCCAGGTAGAAGCTACCCC...TGTCCCATTTCCTTCCTGGCCAGCTGCTACATTAGATGGATGTCTGCCAGGCGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 10 transcripts:
ENSMUST00000004985.11
ENSMUST00000140973.9
ENSMUST00000156029.8
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
3UTR-3UTR CCA 90 bp AAGGTAGAAGTCAACATGGCAATTGGCGGTCTGCAAACCCGCCTGCGGCTTTGGCTGGAGGGCTGTGAGTaGGGGAGGGTCCTTACAGGT +
Preference number: 2 (lower is better)
Translates to: KVEVNMAIGGLQTRLRLWLEGCE*GRVLTG
Trigger: ACCTGTAAGGACCCTCCCCCACTCACAGCCCTCCAG...CCAAAGCCGCAGGCGGGTTTGCAGACCGCCAATTGCCATGTTGACTTCTACCTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000004985.11
ENSMUST00000140973.9
ENSMUST00000156029.8
ENSMUST00000232997.2
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233709.2
3UTR-3UTR TCA 90 bp AAGGTAGAAGTCAACATGGCAATTGGCGGTCTGCAAACCCGCCTGCGGCTTTGGGAACCTTGCCTGCCCTaGGGTATGGTTAGGTGGGAG +
Preference number: 2 (lower is better)
Translates to: KVEVNMAIGGLQTRLRLWEPCLP*GMVRWE
Trigger: CTCCCACCTAACCATACCTCAGGGCAGGCAAGGTTC...CCAAAGCCGCAGGCGGGTTTGCAGACCGCCAATTGCCATGTTGACTTCTACCTT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000004985.11
ENSMUST00000140973.9
ENSMUST00000156029.8
ENSMUST00000232997.2
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233709.2
3UTR-3UTR TCA 90 bp TGCCACAGCAGATCCGAGCCGCATCCTGTCCTAAAAGAGCAGTTTTTAAAGTGGCCTGCTGGAGGGCTGTaGGTGGGGGAGGGTCCTTAC +
Preference number: 2 (lower is better)
Translates to: CHSRSEPHPVLKEQFLKWPAGGL*VGEGPY
Trigger: GTAAGGACCCTCCCCCACTCACAGCCCTCCAGCAGG...CCACTTTAAAAACTGCTCTTTTAGGACAGGATGCGGCTCGGATCTGCTGTGGCA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 8 transcripts:
ENSMUST00000004985.11
ENSMUST00000140973.9
ENSMUST00000156029.8
ENSMUST00000232997.2
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233709.2
3UTR-3UTR TCA 90 bp CTGCTGGAGGGCTGTGAGTGGGGGAGGGTCCTTACAGGTGGGGTAGCTTCTACCTGGTGGAGAAGAGGTTaGAGGCAGGAGATGAAAGAA +
Preference number: 2 (lower is better)
Translates to: LLEGCEWGRVLTGGVASTWWRRG*RQEMKE
Trigger: TTCTTTCATCTCCTGCCTTCAACCTCTTCTCCACCA...GGTAGAAGCTACCCCACCTGTAAGGACCCTCCCCCACTCACAGCCCTCCAGCAG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 8 transcripts:
ENSMUST00000004985.11
ENSMUST00000140973.9
ENSMUST00000156029.8
ENSMUST00000232997.2
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233709.2
3UTR-3UTR TCA 90 bp CGAGGGACCCTGGCACATCTCTGGGATCAATGTCAGAACCTTGCCTGCCCTGAGGGCCTTCTAGCATCTTaGGCTTGTCCACAGTGTCCT +
Preference number: 2 (lower is better)
Translates to: RGTLAHLWDQCQNLACPEGLLAS*ACPQCP
Trigger: AGGACACTGTGGACAAGCTCAAGATGCTAGAAGGCC...CTCAGGGCAGGCAAGGTTCTGACATTGATCCCAGAGATGTGCCAGGGTCCCTCG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000140973.9
ENSMUST00000156029.8
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233701.2
ENSMUST00000233709.2
3UTR-3UTR TCA 90 bp GTCAACATGGCAATTGGCGGTCTGCAAACCCGCCTGCGGCTTTGGTGCTTAAAGAAAGTGTGCTGTGCTTaGCTTCTCCCTGGGCCCAGG +
Preference number: 2 (lower is better)
Translates to: VNMAIGGLQTRLRLWCLKKVCCA*LLPGPR
Trigger: CCTGGGCCCAGGGAGAAGTCAAGCACAGCACACTTT...CTTTAAGCACCAAAGCCGCAGGCGGGTTTGCAGACCGCCAATTGCCATGTTGAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000156029.8
3UTR-3UTR TCA 90 bp GTGATGTTGCTGTCAGTTTGGCACAAGGGAGAGCAGAGAGCAATGAGGGAAGGGAGGGGATTCCTGTTCTaGCAAGGAAGGCGCAGGCCC +
Preference number: 2 (lower is better)
Translates to: VMLLSVWHKGEQRAMREGRGFLF*QGRRRP
Trigger: GGGCCTGCGCCTTCCTTGTCAGAACAGGAATCCCCT...CCCTTCCCTCATTGCTCTCTGCTCTCCCTTGTGCCAAACTGACAGCAACATCAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000232705.2
ENSMUST00000232997.2
3UTR-3UTR TCA 90 bp AGGGCTCGCTCCCCAGTTGCAGGGCTGATTTTTCTAAGAGCTCCTCATCTTCCAAGGGGATTCCTGTTCTaGCAAGGAAGGCGCAGGCCC +
Preference number: 2 (lower is better)
Translates to: RARSPVAGLIFLRAPHLPRGFLF*QGRRRP
Trigger: GGGCCTGCGCCTTCCTTGTCAGAACAGGAATCCCCT...TGGAAGATGAGGAGCTCTTAGAAAAATCAGCCCTGCAACTGGGGAGCGAGCCCT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000232705.2
ENSMUST00000232997.2
3UTR-3UTR GCA 90 bp GAGGTATGGTTAGGTGGGAGAGACATGGAGAGAGCCGGCTGGCCCCAGAAAAGCCCATTAGAAAGAAGCTaGCGGCCATACACGTGGCAG +
Preference number: 2 (lower is better)
Translates to: EVWLGGRDMERAGWPQKSPLERS*RPYTWQ
Trigger: CTGCCACGTGTATGGCCGGCAGCTTCTTTCTAATGG...GCTTTTCTGGGGCCAGCCGGCTCTCTCCATGTCTCTCCCACCTAACCATACCTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 10 transcripts:
ENSMUST00000004985.11
ENSMUST00000140973.9
ENSMUST00000156029.8
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
3UTR-3UTR GCA 90 bp GGAAGGGAAGCTCTGAGGGTTCCCGAGGGACCCTGGCACATCTCTGGGATCAATCCATTAGAAAGAAGCTaGCGGCCATACACGTGGCAG +
Preference number: 2 (lower is better)
Translates to: GREALRVPEGPWHISGINPLERS*RPYTWQ
Trigger: CTGCCACGTGTATGGCCGGCAGCTTCTTTCTAATGG...ATTGATCCCAGAGATGTGCCAGGGTCCCTCGGGAACCCTCAGAGCTTCCCTTCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 10 transcripts:
ENSMUST00000004985.11
ENSMUST00000140973.9
ENSMUST00000156029.8
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
3UTR-3UTR GCA 90 bp TTTTGGCACACAGCAGCCCTCCAGGGGAACCACATGATTGGTCAATATTGGGTCCCTCTCTCCAGCCTCTaGCTGCTTCTGCTCGCCCAG +
Preference number: 2 (lower is better)
Translates to: FWHTAALQGNHMIGQYWVPLSSL*LLLLAQ
Trigger: CTGGGCGAGCAGAAGCAGGCAGAGGCTGGAGAGAGG...GACCCAATATTGACCAATCATGTGGTTCCCCTGGAGGGCTGCTGTGTGCCAAAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000140973.9
ENSMUST00000232705.2
ENSMUST00000233709.2
3UTR-3UTR GCA 90 bp GGAAGGGAAGCTCTGAGGGTTCCCGAGGGACCCTGGCACATCTCTGGGATCAATGTACTGACTTCCGGATaGTGGTCTTGCGGCCTTCTA +
Preference number: 2 (lower is better)
Translates to: GREALRVPEGPWHISGINVLTSG*WSCGLL
Trigger: TAGAAGGCCGCAAGACCAGCATCCGGAAGTCAGTAC...ATTGATCCCAGAGATGTGCCAGGGTCCCTCGGGAACCCTCAGAGCTTCCCTTCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000140973.9
ENSMUST00000156029.8
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233701.2
ENSMUST00000233709.2
3UTR-3UTR GCA 90 bp GGGACCCTGGCACATCTCTGGGATCAATGTCAGAACCTTGCCTGCCCTGAGGTACGCTGGACCGCATGGTaGTCACCAGATCCAGTTTCT +
Preference number: 2 (lower is better)
Translates to: GTLAHLWDQCQNLACPEVRWTAW*SPDPVS
Trigger: AGAAACTGGATCTGGTGAGCACCATGCGGTCCAGCG...TACCTCAGGGCAGGCAAGGTTCTGACATTGATCCCAGAGATGTGCCAGGGTCCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000232705.2
ENSMUST00000232997.2
3UTR-3UTR CCA 90 bp TCACAGAGTCCACAGCTGACCAGCTACCTGGGGATAGGGGGACGTGTCGGCTCCGGGGAACCACATGATTaGTCAATATTGGGTCTTGCC +
Preference number: 2 (lower is better)
Translates to: SQSPQLTSYLGIGGRVGSGEPHD*SILGLA
Trigger: GGCAAGACCCAATATTGACCAATCATGTGGTTCCCC...GGAGCCGACACGTCCCCCTATCCCCAGGTAGCTGGTCAGCTGTGGACTCTGTGA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 8 transcripts:
ENSMUST00000004985.11
ENSMUST00000140973.9
ENSMUST00000156029.8
ENSMUST00000232997.2
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233709.2
3UTR-3UTR CCA 90 bp GGGACCCTGGCACATCTCTGGGATCAATGTCAGAACCTTGCCTGCCCTGAGGTAGTTCCCGAGGGACCCTaGCACATCTCTGGGATCAAT +
Preference number: 2 (lower is better)
Translates to: GTLAHLWDQCQNLACPEVVPEGP*HISGIN
Trigger: ATTGATCCCAGAGATGTGCCAGGGTCCCTCGGGAAC...TACCTCAGGGCAGGCAAGGTTCTGACATTGATCCCAGAGATGTGCCAGGGTCCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 10 transcripts:
ENSMUST00000004985.11
ENSMUST00000140973.9
ENSMUST00000156029.8
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
3UTR-3UTR CCA 90 bp CTGGCACATCTCTGGGATCAATGTCAGAACCTTGCCTGCCCTGAGGTATGGTTACAAGCACGGGCGGTGTaGGGGAAGGGAAGCTCTGAG +
Preference number: 2 (lower is better)
Translates to: LAHLWDQCQNLACPEVWLQARAV*GKGSSE
Trigger: CTCAGAGCTTCCCTTCCCCCACACCGCCCGTGCTTG...TAACCATACCTCAGGGCAGGCAAGGTTCTGACATTGATCCCAGAGATGTGCCAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 10 transcripts:
ENSMUST00000004985.11
ENSMUST00000140973.9
ENSMUST00000156029.8
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
3UTR-3UTR CCA 90 bp GTGATGTTGCTGTCAGTTTGGCACAAGGGAGAGCAGAGAGCAATGAGGGAAGGGGGGGTAGCTTCTACCTaGGACTCAAGCGCCTGGCAG +
Preference number: 2 (lower is better)
Translates to: VMLLSVWHKGEQRAMREGGVAST*DSSAWQ
Trigger: CTGCCAGGCGCTTGAGTCCCAGGTAGAAGCTACCCC...CCCTTCCCTCATTGCTCTCTGCTCTCCCTTGTGCCAAACTGACAGCAACATCAC
57% GC, longest homopolymer 7 nt, total homopolymer stretches 7 nt.
Matches the following 10 transcripts:
ENSMUST00000004985.11
ENSMUST00000140973.9
ENSMUST00000156029.8
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
3UTR-3UTR CCA 90 bp TACAGTTATGTACACCACGCCCTGTCCCGCGTGGCTGTGCTGTTTGCTGGACAGGAGGGTCCTTACAGGTaGGGTAGCTTCTACCTGGGA +
Preference number: 2 (lower is better)
Translates to: YSYVHHALSRVAVLFAGQEGPYR*GSFYLG
Trigger: TCCCAGGTAGAAGCTACCCCACCTGTAAGGACCCTC...CTGTCCAGCAAACAGCACAGCCACGCGGGACAGGGCGTGGTGTACATAACTGTA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000004985.11
ENSMUST00000140973.9
ENSMUST00000156029.8
ENSMUST00000232997.2
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233709.2
3UTR-3UTR CCA 90 bp GGGAACCACATGATTGGTCAATATTGGGTCTTGCCCTCGGAGACCCAGTCCAGTGTGGAGGGACAGGGATaGGGACACCGTTGTGCAGGA +
Preference number: 2 (lower is better)
Translates to: GNHMIGQYWVLPSETQSSVEGQG*GHRCAG
Trigger: TCCTGCACAACGGTGTCCCCATCCCTGTCCCTCCAC...ACTGGACTGGGTCTCCGAGGGCAAGACCCAATATTGACCAATCATGTGGTTCCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000140973.9
ENSMUST00000232705.2
ENSMUST00000233709.2
3UTR CAA 90 bp TCCTCATCTTCCACCTTCCGGGACTTTAGGAACCGGCTTGAAGGTTaGCTGTCGCTGATGGGTTTCAGGGTTGGGGGATCTGGAGGGGAT +
Preference number: 2 (lower is better)
Translates to: SSSSTFRDFRNRLEG*LSLMGFRVGGSGGD
Trigger: ATCCCCTCCAGATCCCCCAACCCTGAAACCCATCAGCGACAGCAAACCTTCAAGCCGGTTCCTAAAGTCCCGGAAGGTGGAAGATGAGGA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000232705.2
ENSMUST00000232997.2
3UTR-3UTR TCA 90 bp AGTCAGGGCCTGCCATTAGAAAGAAGCTGCCGGCCATACACGTGGCAGGGGCAGTCCAGGGGAACCACATaGTTGGTCAATATTGGGTCT +
Preference number: 2 (lower is better)
Translates to: SQGLPLERSCRPYTWQGQSRGTT*LVNIGS
Trigger: AGACCCAATATTGACCAATCATGTGGTTCCCCTGGA...CTGCCCCTGCCACGTGTATGGCCGGCAGCTTCTTTCTAATGGCAGGCCCTGACT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 10 transcripts:
ENSMUST00000004985.11
ENSMUST00000140973.9
ENSMUST00000156029.8
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
3UTR-3UTR TCA 90 bp GGAGAGGCAAAGAAGGCAGACACAGGCCCAGCTCGGCTCTCACAGGTAGCTGGATCCAGGGGAACCACATaGTTGGTCAATATTGGGTCT +
Preference number: 2 (lower is better)
Translates to: GEAKKADTGPARLSQVAGSRGTT*LVNIGS
Trigger: AGACCCAATATTGACCAATCATGTGGTTCCCCTGGA...TCCAGCTACCTGTGAGAGCCGAGCTGGGCCTGTGTCTGCCTTCTTTGCCTCTCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000140973.9
ENSMUST00000156029.8
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233701.2
ENSMUST00000233709.2
3UTR-3UTR TCA 90 bp GGGAACCACATGATTGGTCAATATTGGGTCTTGCCCTCGGAGACCCAGTCCAGTGAACCTTGCCTGCCCTaGGGTATGGTTAGGTGGGAG +
Preference number: 2 (lower is better)
Translates to: GNHMIGQYWVLPSETQSSEPCLP*GMVRWE
Trigger: CTCCCACCTAACCATACCTCAGGGCAGGCAAGGTTC...ACTGGACTGGGTCTCCGAGGGCAAGACCCAATATTGACCAATCATGTGGTTCCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 10 transcripts:
ENSMUST00000004985.11
ENSMUST00000140973.9
ENSMUST00000156029.8
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
3UTR-3UTR TCA 90 bp CATCTCTGGGATCAATGTCAGAACCTTGCCTGCCCTGAGGTATGGTTAGGTGGGGAACCTTGCCTGCCCTaGGGTATGGTTAGGTGGGAG +
Preference number: 2 (lower is better)
Translates to: HLWDQCQNLACPEVWLGGEPCLP*GMVRWE
Trigger: CTCCCACCTAACCATACCTCAGGGCAGGCAAGGTTC...CCCACCTAACCATACCTCAGGGCAGGCAAGGTTCTGACATTGATCCCAGAGATG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 10 transcripts:
ENSMUST00000004985.11
ENSMUST00000140973.9
ENSMUST00000156029.8
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
3UTR-3UTR TCA 90 bp TATAAAAGCAGCACCAGTTCTGGGCTCCAGGTTTTTCCGCCTCTACAATCAAGCCCTGCTGGAGGGCTGTaGGTGGGGGAGGGTCCTTAC +
Preference number: 2 (lower is better)
Translates to: YKSSTSSGLQVFPPLQSSPAGGL*VGEGPY
Trigger: GTAAGGACCCTCCCCCACTCACAGCCCTCCAGCAGG...GCTTGATTGTAGAGGCGGAAAAACCTGGAGCCCAGAACTGGTGCTGCTTTTATA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000004985.11
3UTR-3UTR TCA 90 bp AAGGGAAGCTCTGAGGGTTCCCGAGGGACCCTGGCACATCTCTGGGATCAATGTGGCCTTCTAGCATCTTaGGCTTGTCCACAGTGTCCT +
Preference number: 2 (lower is better)
Translates to: KGSSEGSRGTLAHLWDQCGLLAS*ACPQCP
Trigger: AGGACACTGTGGACAAGCTCAAGATGCTAGAAGGCC...ACATTGATCCCAGAGATGTGCCAGGGTCCCTCGGGAACCCTCAGAGCTTCCCTT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000140973.9
ENSMUST00000156029.8
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233701.2
ENSMUST00000233709.2
3UTR-3UTR TCA 90 bp GTGATGTTGCTGTCAGTTTGGCACAAGGGAGAGCAGAGAGCAATGAGGGAAGGGGAATGCAAGCAGAGCTaGGGTGCAGCTGCAGAAGGC +
Preference number: 2 (lower is better)
Translates to: VMLLSVWHKGEQRAMREGECKQS*GAAAEG
Trigger: GCCTTCTGCAGCTGCACCTCAGCTCTGCTTGCATTC...CCCTTCCCTCATTGCTCTCTGCTCTCCCTTGTGCCAAACTGACAGCAACATCAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000156029.8
3UTR-3UTR TCA 90 bp GGTGATGTTGCTGTCAGTTTGGCACAAGGGAGAGCAGAGAGCAATGAGGGAAGGTTTGCCGAAGGGCATTaGTCTCCCTGCGCAGCATGC +
Preference number: 2 (lower is better)
Translates to: GDVAVSLAQGRAESNEGRFAEGH*SPCAAC
Trigger: GCATGCTGCGCAGGGAGATCAATGCCCTTCGGCAAA...CCTTCCCTCATTGCTCTCTGCTCTCCCTTGTGCCAAACTGACAGCAACATCACC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000232705.2
ENSMUST00000232997.2
3UTR-3UTR GCA 90 bp TCCATCAGTGAGCTCTGCTTCTGTAAGGAGAGCACCCACCATCAGCCTCTAGCGCAGCAGAGGTTCTCATaGCTCAGGGACAGAGGAGAG +
Preference number: 2 (lower is better)
Translates to: SISELCFCKESTHHQPLAQQRFS*LRDRGE
Trigger: CTCTCCTCTGTCCCTGAGGCATGAGAACCTCTGCTG...CGCTAGAGGCTGATGGTGGGTGCTCTCCTTACAGAAGCAGAGCTCACTGATGGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000004985.11
3UTR-3UTR GCA 90 bp CATGATTGGTCAATATTGGGTCTTGCCCTCGGAGACCCAGTCCAGTCAGGGCCTCAGCAGAGGTTCTCATaGCTCAGGGACAGAGGAGAG +
Preference number: 2 (lower is better)
Translates to: HDWSILGLALGDPVQSGPQQRFS*LRDRGE
Trigger: CTCTCCTCTGTCCCTGAGGCATGAGAACCTCTGCTG...AGGCCCTGACTGGACTGGGTCTCCGAGGGCAAGACCCAATATTGACCAATCATG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 10 transcripts:
ENSMUST00000004985.11
ENSMUST00000140973.9
ENSMUST00000156029.8
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
3UTR-3UTR GCA 90 bp AAGGTAGAAGTCAACATGGCAATTGGCGGTCTGCAAACCCGCCTGCGGCTTTGGCAGCAGAGGTTCTCATaGCTCAGGGACAGAGGAGAG +
Preference number: 2 (lower is better)
Translates to: KVEVNMAIGGLQTRLRLWQQRFS*LRDRGE
Trigger: CTCTCCTCTGTCCCTGAGGCATGAGAACCTCTGCTG...CCAAAGCCGCAGGCGGGTTTGCAGACCGCCAATTGCCATGTTGACTTCTACCTT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000004985.11
ENSMUST00000140973.9
ENSMUST00000156029.8
ENSMUST00000232997.2
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233709.2
3UTR-3UTR GCA 90 bp GCTGTTTCTACTTCTAAGTGGTTCTTCAGTGGAATATCCCCAGGGACCTCGGGTGAGGCTTATGGCTGCTaGAGGAGGGGAGGGCAGCAG +
Preference number: 2 (lower is better)
Translates to: AVSTSKWFFSGISPGTSGEAYGC*RRGGQQ
Trigger: CTGCTGCCCTCCCCTCCTGCAGCAGCCATAAGCCTC...ACCCGAGGTCCCTGGGGATATTCCACTGAAGAACCACTTAGAAGTAGAAACAGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 8 transcripts:
ENSMUST00000004985.11
ENSMUST00000140973.9
ENSMUST00000156029.8
ENSMUST00000232997.2
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233709.2
3UTR-3UTR GCA 90 bp GGCAGACATCCATCTAATGTAGCAGCTGGCCAGGAAGGAAATGGGACATCAAAGGAGGCTTATGGCTGCTaGAGGAGGGGAGGGCAGCAG +
Preference number: 2 (lower is better)
Translates to: GRHPSNVAAGQEGNGTSKEAYGC*RRGGQQ
Trigger: CTGCTGCCCTCCCCTCCTGCAGCAGCCATAAGCCTC...CTTTGATGTCCCATTTCCTTCCTGGCCAGCTGCTACATTAGATGGATGTCTGCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000004985.11
ENSMUST00000140973.9
ENSMUST00000156029.8
ENSMUST00000232997.2
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233709.2
3UTR-3UTR GCA 90 bp CTGGCACATCTCTGGGATCAATGTCAGAACCTTGCCTGCCCTGAGGTATGGTTAAGTGAGGCTTATGGCTaGTGCAGGAGGGGAGGGCAG +
Preference number: 2 (lower is better)
Translates to: LAHLWDQCQNLACPEVWLSEAYG*CRRGGQ
Trigger: CTGCCCTCCCCTCCTGCAGCAGCCATAAGCCTCACT...TAACCATACCTCAGGGCAGGCAAGGTTCTGACATTGATCCCAGAGATGTGCCAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000004985.11
ENSMUST00000140973.9
ENSMUST00000156029.8
ENSMUST00000232997.2
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233709.2
3UTR-3UTR GCA 90 bp CCTGGCAGACATCCATCTAATGTAGCAGCTGGCCAGGAAGGAAATGGGACATCAAGTGAGGCTTATGGCTaGTGCAGGAGGGGAGGGCAG +
Preference number: 2 (lower is better)
Translates to: PGRHPSNVAAGQEGNGTSSEAYG*CRRGGQ
Trigger: CTGCCCTCCCCTCCTGCAGCAGCCATAAGCCTCACT...TGATGTCCCATTTCCTTCCTGGCCAGCTGCTACATTAGATGGATGTCTGCCAGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000004985.11
ENSMUST00000140973.9
ENSMUST00000156029.8
ENSMUST00000232997.2
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233709.2
3UTR-3UTR GCA 90 bp GGCTGTGCTGTTTGCTGGACAGAACCTGGCCCTCTTGGTGAGTTTTGTTGGTTCTGTCCCGCGTGGCTGTaGTGTTTGCTGGACAGAACC +
Preference number: 2 (lower is better)
Translates to: GCAVCWTEPGPLGEFCWFCPAWL*CLLDRT
Trigger: GGTTCTGTCCAGCAAACAGCACAGCCACGCGGGACA...GAACCAACAAAACTCACCAAGAGGGCCAGGTTCTGTCCAGCAAACAGCACAGCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000004985.11
ENSMUST00000140973.9
ENSMUST00000156029.8
ENSMUST00000232997.2
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233709.2
3UTR-3UTR GCA 90 bp GCTGTTTCTACTTCTAAGTGGTTCTTCAGTGGAATATCCCCAGGGACCTCGGGTGCCTCTGCCTGCTTCTaGTCGCCCAGCTTCAGCACG +
Preference number: 2 (lower is better)
Translates to: AVSTSKWFFSGISPGTSGASACF*SPSFST
Trigger: CGTGCTGAAGCTGGGCGAGCAGAAGCAGGCAGAGGC...ACCCGAGGTCCCTGGGGATATTCCACTGAAGAACCACTTAGAAGTAGAAACAGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000140973.9
ENSMUST00000232705.2
ENSMUST00000233709.2
3UTR-3UTR GCA 90 bp CTGTTTCTACTTCTAAGTGGTTCTTCAGTGGAATATCCCCAGGGACCTCGGGTGCCTCTCTCCAGCCTCTaGCTGCTTCTGCTCGCCCAG +
Preference number: 2 (lower is better)
Translates to: LFLLLSGSSVEYPQGPRVPLSSL*LLLLAQ
Trigger: CTGGGCGAGCAGAAGCAGGCAGAGGCTGGAGAGAGG...CACCCGAGGTCCCTGGGGATATTCCACTGAAGAACCACTTAGAAGTAGAAACAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000140973.9
ENSMUST00000232705.2
ENSMUST00000233709.2
3UTR-3UTR GCA 90 bp TACAGTTATGTACACCACGCCCTGTCCCGCGTGGCTGTGCTGTTTGCTGGACAGGTACTGACTTCCGGATaGTGGTCTTGCGGCCTTCTA +
Preference number: 2 (lower is better)
Translates to: YSYVHHALSRVAVLFAGQVLTSG*WSCGLL
Trigger: TAGAAGGCCGCAAGACCAGCATCCGGAAGTCAGTAC...CTGTCCAGCAAACAGCACAGCCACGCGGGACAGGGCGTGGTGTACATAACTGTA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000140973.9
ENSMUST00000156029.8
ENSMUST00000232997.2
ENSMUST00000233709.2
3UTR-3UTR GCA 90 bp GTGATGTTGCTGTCAGTTTGGCACAAGGGAGAGCAGAGAGCAATGAGGGAAGGGCCGGAGGCGGACAGCTaGTCGGTGGAAAATTGTGTC +
Preference number: 2 (lower is better)
Translates to: VMLLSVWHKGEQRAMREGPEADS*SVENCV
Trigger: GACACAATTTTCCACCGAGCAGCTGTCCGCCTCCGG...CCCTTCCCTCATTGCTCTCTGCTCTCCCTTGTGCCAAACTGACAGCAACATCAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000232705.2
ENSMUST00000232997.2
3UTR-3UTR CCA 90 bp GGAAGGGAAGCTCTGAGGGTTCCCGAGGGACCCTGGCACATCTCTGGGATCAATGTCTATCTCCCTGGCTaGCTAAGACTCTCAGCTGTT +
Preference number: 2 (lower is better)
Translates to: GREALRVPEGPWHISGINVYLPG*LRLSAV
Trigger: AACAGCTGAGAGTCTTAGCCAGCCAGGGAGATAGAC...ATTGATCCCAGAGATGTGCCAGGGTCCCTCGGGAACCCTCAGAGCTTCCCTTCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 10 transcripts:
ENSMUST00000004985.11
ENSMUST00000140973.9
ENSMUST00000156029.8
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
3UTR-3UTR CCA 90 bp GAGGGACCCTGGCACATCTCTGGGATCAATGTCAGAACCTTGCCTGCCCTGAGGGTCTATCTCCCTGGCTaGCTAAGACTCTCAGCTGTT +
Preference number: 2 (lower is better)
Translates to: EGPWHISGINVRTLPALRVYLPG*LRLSAV
Trigger: AACAGCTGAGAGTCTTAGCCAGCCAGGGAGATAGAC...CCTCAGGGCAGGCAAGGTTCTGACATTGATCCCAGAGATGTGCCAGGGTCCCTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 10 transcripts:
ENSMUST00000004985.11
ENSMUST00000140973.9
ENSMUST00000156029.8
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
3UTR-3UTR CCA 90 bp CAGAGGAGAGGCAAAGAAGGCAGACACAGGCCCAGCTCGGCTCTCACAGGTAGCACCCTGGCACATCTCTaGGATCAATGTCAGAACCTT +
Preference number: 2 (lower is better)
Translates to: QRRGKEGRHRPSSALTGSTLAHL*DQCQNL
Trigger: AAGGTTCTGACATTGATCCCAGAGATGTGCCAGGGT...GCTACCTGTGAGAGCCGAGCTGGGCCTGTGTCTGCCTTCTTTGCCTCTCCTCTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000140973.9
ENSMUST00000156029.8
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233701.2
ENSMUST00000233709.2
3UTR-3UTR CCA 90 bp AAGAAATGTCAAGAGCAGAAGCCTCTGAGAGCTGCGTTGGCTTGTCAGTCAGCTCAAGCACGGGCGGTGTaGGGGAAGGGAAGCTCTGAG +
Preference number: 2 (lower is better)
Translates to: KKCQEQKPLRAALACQSAQARAV*GKGSSE
Trigger: CTCAGAGCTTCCCTTCCCCCACACCGCCCGTGCTTG...AGCTGACTGACAAGCCAACGCAGCTCTCAGAGGCTTCTGCTCTTGACATTTCTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000004985.11
ENSMUST00000140973.9
ENSMUST00000156029.8
ENSMUST00000232997.2
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233709.2
3UTR-3UTR CCA 90 bp GTCAACATGGCAATTGGCGGTCTGCAAACCCGCCTGCGGCTTTGGTGCTTAAAGAGGGAGAACCTGGGTTaGGTGTGGGAGATGAGACAG +
Preference number: 2 (lower is better)
Translates to: VNMAIGGLQTRLRLWCLKRENLG*VWEMRQ
Trigger: CTGTCTCATCTCCCACACCCAACCCAGGTTCTCCCT...CTTTAAGCACCAAAGCCGCAGGCGGGTTTGCAGACCGCCAATTGCCATGTTGAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000004985.11
ENSMUST00000140973.9
ENSMUST00000156029.8
ENSMUST00000232997.2
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233709.2
3UTR-3UTR CCA 90 bp AGCCCTCCAGGGGAACCACATGATTGGTCAATATTGGGTCTTGCCCTCGGAGACGGCTGTGCTGTTTGCTaGACAGAACCTGGCCCTCTT +
Preference number: 2 (lower is better)
Translates to: SPPGEPHDWSILGLALGDGCAVC*TEPGPL
Trigger: AAGAGGGCCAGGTTCTGTCCAGCAAACAGCACAGCC...GTCTCCGAGGGCAAGACCCAATATTGACCAATCATGTGGTTCCCCTGGAGGGCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000004985.11
ENSMUST00000140973.9
ENSMUST00000156029.8
ENSMUST00000232997.2
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233709.2
3UTR-3UTR CCA 90 bp CCTGGCAGACATCCATCTAATGTAGCAGCTGGCCAGGAAGGAAATGGGACATCAGTGGAGGGACAGGGATaGGGACACCGTTGTGCAGGA +
Preference number: 2 (lower is better)
Translates to: PGRHPSNVAAGQEGNGTSVEGQG*GHRCAG
Trigger: TCCTGCACAACGGTGTCCCCATCCCTGTCCCTCCAC...TGATGTCCCATTTCCTTCCTGGCCAGCTGCTACATTAGATGGATGTCTGCCAGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000140973.9
ENSMUST00000232705.2
ENSMUST00000233709.2
3UTR-3UTR CCA 90 bp CTCCAGGGGAACCACATGATTGGTCAATATTGGGTCTTGCCCTCGGAGACCCAGCTGACTTCCGGATGCTaGTCTTGCGGCCTTCTAGCA +
Preference number: 2 (lower is better)
Translates to: LQGNHMIGQYWVLPSETQLTSGC*SCGLLA
Trigger: TGCTAGAAGGCCGCAAGACCAGCATCCGGAAGTCAG...CTGGGTCTCCGAGGGCAAGACCCAATATTGACCAATCATGTGGTTCCCCTGGAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000140973.9
ENSMUST00000156029.8
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233701.2
ENSMUST00000233709.2
3UTR-3UTR CCA 90 bp GGGAACCACATGATTGGTCAATATTGGGTCTTGCCCTCGGAGACCCAGTCCAGTGGCTCAGGTGGATCATaGCGCGGTCATAGGCCACTT +
Preference number: 2 (lower is better)
Translates to: GNHMIGQYWVLPSETQSSGSGGS*RGHRPL
Trigger: AAGTGGCCTATGACCGCGCCATGATCCACCTGAGCC...ACTGGACTGGGTCTCCGAGGGCAAGACCCAATATTGACCAATCATGTGGTTCCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000140973.9
ENSMUST00000156029.8
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233701.2
ENSMUST00000233709.2
3UTR-3UTR CCA 90 bp GGCAGACATCCATCTAATGTAGCAGCTGGCCAGGAAGGAAATGGGACATCAAAGGCTGACCCTGCACCTTaGCCAGGCTCCTACAGCAGC +
Preference number: 2 (lower is better)
Translates to: GRHPSNVAAGQEGNGTSKADPAP*PGSYSS
Trigger: GCTGCTGTAGGAGCCTGGCCAAGGTGCAGGGTCAGC...CTTTGATGTCCCATTTCCTTCCTGGCCAGCTGCTACATTAGATGGATGTCTGCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000156029.8
3UTR-3UTR CCA 90 bp TCCCGAGGGACCCTGGCACATCTCTGGGATCAATGTCAGAACCTTGCCTGCCCTCAGGACTTTGTCCCTTaGAAGCCACTGCCTAGAATG +
Preference number: 2 (lower is better)
Translates to: SRGTLAHLWDQCQNLACPQDFVP*KPLPRM
Trigger: CATTCTAGGCAGTGGCTTCCAAGGGACAAAGTCCTG...AGGGCAGGCAAGGTTCTGACATTGATCCCAGAGATGTGCCAGGGTCCCTCGGGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000156029.8
3UTR-3UTR CCA 90 bp TACAGTTATGTACACCACGCCCTGTCCCGCGTGGCTGTGCTGTTTGCTGGACAGATGGGCCCGGTTCTCTaGGATAAGGATGTTGTCCAC +
Preference number: 2 (lower is better)
Translates to: YSYVHHALSRVAVLFAGQMGPVL*DKDVVH
Trigger: GTGGACAACATCCTTATCCCAGAGAACCGGGCCCAT...CTGTCCAGCAAACAGCACAGCCACGCGGGACAGGGCGTGGTGTACATAACTGTA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000232997.2
3UTR-3UTR TCA 90 bp CTGGCACATCTCTGGGATCAATGTCAGAACCTTGCCTGCCCTGAGGTATGGTTAGAACCTTGCCTGCCCTaGGGTATGGTTAGGTGGGAG +
Preference number: 2 (lower is better)
Translates to: LAHLWDQCQNLACPEVWLEPCLP*GMVRWE
Trigger: CTCCCACCTAACCATACCTCAGGGCAGGCAAGGTTC...TAACCATACCTCAGGGCAGGCAAGGTTCTGACATTGATCCCAGAGATGTGCCAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 10 transcripts:
ENSMUST00000004985.11
ENSMUST00000140973.9
ENSMUST00000156029.8
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
3UTR-3UTR TCA 90 bp TACAGTTATGTACACCACGCCCTGTCCCGCGTGGCTGTGCTGTTTGCTGGACAGTTTGAGGGTAGGGATTaGGGAGGTGATGGTGGAGAA +
Preference number: 2 (lower is better)
Translates to: YSYVHHALSRVAVLFAGQFEGRD*GGDGGE
Trigger: TTCTCCACCATCACCTCCTCAATCCCTACCCTCAAA...CTGTCCAGCAAACAGCACAGCCACGCGGGACAGGGCGTGGTGTACATAACTGTA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000004985.11
ENSMUST00000140973.9
ENSMUST00000156029.8
ENSMUST00000232997.2
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233709.2
3UTR-3UTR GCA 90 bp GTCAACATGGCAATTGGCGGTCTGCAAACCCGCCTGCGGCTTTGGTGCTTAAAGCCATTAGAAAGAAGCTaGCGGCCATACACGTGGCAG +
Preference number: 2 (lower is better)
Translates to: VNMAIGGLQTRLRLWCLKPLERS*RPYTWQ
Trigger: CTGCCACGTGTATGGCCGGCAGCTTCTTTCTAATGG...CTTTAAGCACCAAAGCCGCAGGCGGGTTTGCAGACCGCCAATTGCCATGTTGAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000004985.11
ENSMUST00000140973.9
ENSMUST00000156029.8
ENSMUST00000232997.2
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233709.2
3UTR-3UTR GCA 90 bp AGCAGCCCTCCAGGGGAACCACATGATTGGTCAATATTGGGTCTTGCCCTCGGACCATTAGAAAGAAGCTaGCGGCCATACACGTGGCAG +
Preference number: 2 (lower is better)
Translates to: SSPPGEPHDWSILGLALGPLERS*RPYTWQ
Trigger: CTGCCACGTGTATGGCCGGCAGCTTCTTTCTAATGG...TCCGAGGGCAAGACCCAATATTGACCAATCATGTGGTTCCCCTGGAGGGCTGCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 10 transcripts:
ENSMUST00000004985.11
ENSMUST00000140973.9
ENSMUST00000156029.8
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
3UTR-3UTR GCA 90 bp GCTGTTTCTACTTCTAAGTGGTTCTTCAGTGGAATATCCCCAGGGACCTCGGGTAGTGAGGCTTATGGCTaGTGCAGGAGGGGAGGGCAG +
Preference number: 2 (lower is better)
Translates to: AVSTSKWFFSGISPGTSGSEAYG*CRRGGQ
Trigger: CTGCCCTCCCCTCCTGCAGCAGCCATAAGCCTCACT...ACCCGAGGTCCCTGGGGATATTCCACTGAAGAACCACTTAGAAGTAGAAACAGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 8 transcripts:
ENSMUST00000004985.11
ENSMUST00000140973.9
ENSMUST00000156029.8
ENSMUST00000232997.2
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233709.2
3UTR-3UTR GCA 90 bp GGCAGACATCCATCTAATGTAGCAGCTGGCCAGGAAGGAAATGGGACATCAAAGAGTGAGGCTTATGGCTaGTGCAGGAGGGGAGGGCAG +
Preference number: 2 (lower is better)
Translates to: GRHPSNVAAGQEGNGTSKSEAYG*CRRGGQ
Trigger: CTGCCCTCCCCTCCTGCAGCAGCCATAAGCCTCACT...CTTTGATGTCCCATTTCCTTCCTGGCCAGCTGCTACATTAGATGGATGTCTGCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000004985.11
ENSMUST00000140973.9
ENSMUST00000156029.8
ENSMUST00000232997.2
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233709.2
3UTR-3UTR GCA 90 bp TCACAGAGTCCACAGCTGACCAGCTACCTGGGGATAGGGGGACGTGTCGGCTCCTGGAGAGTGTGTGCCTaGTATCTTACAGTTATGTAC +
Preference number: 2 (lower is better)
Translates to: SQSPQLTSYLGIGGRVGSWRVCA*YLTVMY
Trigger: GTACATAACTGTAAGATAGCAGGCACACACTCTCCA...GGAGCCGACACGTCCCCCTATCCCCAGGTAGCTGGTCAGCTGTGGACTCTGTGA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 8 transcripts:
ENSMUST00000004985.11
ENSMUST00000140973.9
ENSMUST00000156029.8
ENSMUST00000232997.2
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233709.2
3UTR-3UTR GCA 90 bp CCTGGCAGACATCCATCTAATGTAGCAGCTGGCCAGGAAGGAAATGGGACATCACAGTTCCTTCAGCTGTaGCTCTGGGGACAGATGGGC +
Preference number: 2 (lower is better)
Translates to: PGRHPSNVAAGQEGNGTSQFLQL*LWGQMG
Trigger: GCCCATCTGTCCCCAGAGGCACAGCTGAAGGAACTG...TGATGTCCCATTTCCTTCCTGGCCAGCTGCTACATTAGATGGATGTCTGCCAGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000232705.2
ENSMUST00000232997.2
3UTR-3UTR GCA 90 bp AGCCCTCCAGGGGAACCACATGATTGGTCAATATTGGGTCTTGCCCTCGGAGACGGCTGTGCTAGCTTTTaGCGAAGGGCATTGATCTCC +
Preference number: 2 (lower is better)
Translates to: SPPGEPHDWSILGLALGDGCASF*RRALIS
Trigger: GGAGATCAATGCCCTTCGGCAAAAGCTAGCACAGCC...GTCTCCGAGGGCAAGACCCAATATTGACCAATCATGTGGTTCCCCTGGAGGGCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000232705.2
ENSMUST00000232997.2
3UTR-3UTR CCA 90 bp GAGGGACCCTGGCACATCTCTGGGATCAATGTCAGAACCTTGCCTGCCCTGAGGGGGGAACCACATGATTaGTCAATATTGGGTCTTGCC +
Preference number: 2 (lower is better)
Translates to: EGPWHISGINVRTLPALRGEPHD*SILGLA
Trigger: GGCAAGACCCAATATTGACCAATCATGTGGTTCCCC...CCTCAGGGCAGGCAAGGTTCTGACATTGATCCCAGAGATGTGCCAGGGTCCCTC
54% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 10 transcripts:
ENSMUST00000004985.11
ENSMUST00000140973.9
ENSMUST00000156029.8
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
3UTR-3UTR CCA 90 bp CGAGGGACCCTGGCACATCTCTGGGATCAATGTCAGAACCTTGCCTGCCCTGAGACCCTGGCACATCTCTaGGATCAATGTCAGAACCTT +
Preference number: 2 (lower is better)
Translates to: RGTLAHLWDQCQNLACPETLAHL*DQCQNL
Trigger: AAGGTTCTGACATTGATCCCAGAGATGTGCCAGGGT...CTCAGGGCAGGCAAGGTTCTGACATTGATCCCAGAGATGTGCCAGGGTCCCTCG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 10 transcripts:
ENSMUST00000004985.11
ENSMUST00000140973.9
ENSMUST00000156029.8
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
3UTR-3UTR CCA 90 bp TCCCGAGGGACCCTGGCACATCTCTGGGATCAATGTCAGAACCTTGCCTGCCCTACCCTGGCACATCTCTaGGATCAATGTCAGAACCTT +
Preference number: 2 (lower is better)
Translates to: SRGTLAHLWDQCQNLACPTLAHL*DQCQNL
Trigger: AAGGTTCTGACATTGATCCCAGAGATGTGCCAGGGT...AGGGCAGGCAAGGTTCTGACATTGATCCCAGAGATGTGCCAGGGTCCCTCGGGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 10 transcripts:
ENSMUST00000004985.11
ENSMUST00000140973.9
ENSMUST00000156029.8
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
3UTR-3UTR CCA 90 bp CAATTTGGTGATGTTGCTGTCAGTTTGGCACAAGGGAGAGCAGAGAGCAATGAGCAAGCACGGGCGGTGTaGGGGAAGGGAAGCTCTGAG +
Preference number: 2 (lower is better)
Translates to: QFGDVAVSLAQGRAESNEQARAV*GKGSSE
Trigger: CTCAGAGCTTCCCTTCCCCCACACCGCCCGTGCTTG...CTCATTGCTCTCTGCTCTCCCTTGTGCCAAACTGACAGCAACATCACCAAATTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 10 transcripts:
ENSMUST00000004985.11
ENSMUST00000140973.9
ENSMUST00000156029.8
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
3UTR-3UTR CCA 90 bp GGGACTCGGAGAGAGGGAAGGATTCCGAGACTGAAAAATAGAGACAGAGGAGATGGGGTAGCTTCTACCTaGGACTCAAGCGCCTGGCAG +
Preference number: 2 (lower is better)
Translates to: GTRREGRIPRLKNRDRGDGVAST*DSSAWQ
Trigger: CTGCCAGGCGCTTGAGTCCCAGGTAGAAGCTACCCC...ATCTCCTCTGTCTCTATTTTTCAGTCTCGGAATCCTTCCCTCTCTCCGAGTCCC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 8 transcripts:
ENSMUST00000004985.11
ENSMUST00000140973.9
ENSMUST00000156029.8
ENSMUST00000232997.2
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233709.2
3UTR-3UTR CCA 90 bp GGGAACCACATGATTGGTCAATATTGGGTCTTGCCCTCGGAGACCCAGTCCAGTGAGGGTCCTTACAGGTaGGGTAGCTTCTACCTGGGA +
Preference number: 2 (lower is better)
Translates to: GNHMIGQYWVLPSETQSSEGPYR*GSFYLG
Trigger: TCCCAGGTAGAAGCTACCCCACCTGTAAGGACCCTC...ACTGGACTGGGTCTCCGAGGGCAAGACCCAATATTGACCAATCATGTGGTTCCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 10 transcripts:
ENSMUST00000004985.11
ENSMUST00000140973.9
ENSMUST00000156029.8
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
3UTR-3UTR CCA 90 bp CAACATGGCAATTGGCGGTCTGCAAACCCGCCTGCGGCTTTGGTGCTTAAAGAAGAGGGTCCTTACAGGTaGGGTAGCTTCTACCTGGGA +
Preference number: 2 (lower is better)
Translates to: QHGNWRSANPPAALVLKEEGPYR*GSFYLG
Trigger: TCCCAGGTAGAAGCTACCCCACCTGTAAGGACCCTC...TTCTTTAAGCACCAAAGCCGCAGGCGGGTTTGCAGACCGCCAATTGCCATGTTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000004985.11
ENSMUST00000140973.9
ENSMUST00000156029.8
ENSMUST00000232997.2
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233709.2
3UTR-3UTR CCA 90 bp GGCTGTGCTGTTTGCTGGACAGAACCTGGCCCTCTTGGTGAGTTTTGTTGGTTCGAGGGTCCTTACAGGTaGGGTAGCTTCTACCTGGGA +
Preference number: 2 (lower is better)
Translates to: GCAVCWTEPGPLGEFCWFEGPYR*GSFYLG
Trigger: TCCCAGGTAGAAGCTACCCCACCTGTAAGGACCCTC...GAACCAACAAAACTCACCAAGAGGGCCAGGTTCTGTCCAGCAAACAGCACAGCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000004985.11
ENSMUST00000140973.9
ENSMUST00000156029.8
ENSMUST00000232997.2
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233709.2
3UTR-3UTR CCA 90 bp TTTGTTGGTTCCCTTTTAAACTCTGGCTCGAGTCCCAAAAGTGTAAGAAGTTGGCCAGAGGGCGGGTGCTaGAGGGCAGTGCCATGCCGC +
Preference number: 2 (lower is better)
Translates to: FVGSLLNSGSSPKSVRSWPEGGC*RAVPCR
Trigger: GCGGCATGGCACTGCCCTCCAGCACCCGCCCTCTGG...CCAACTTCTTACACTTTTGGGACTCGAGCCAGAGTTTAAAAGGGAACCAACAAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 8 transcripts:
ENSMUST00000004985.11
ENSMUST00000140973.9
ENSMUST00000156029.8
ENSMUST00000232997.2
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233709.2
3UTR-3UTR CCA 90 bp GGCTGTGCTGTTTGCTGGACAGAACCTGGCCCTCTTGGTGAGTTTTGTTGGTTCGGCTGTGCTGTTTGCTaGACAGAACCTGGCCCTCTT +
Preference number: 2 (lower is better)
Translates to: GCAVCWTEPGPLGEFCWFGCAVC*TEPGPL
Trigger: AAGAGGGCCAGGTTCTGTCCAGCAAACAGCACAGCC...GAACCAACAAAACTCACCAAGAGGGCCAGGTTCTGTCCAGCAAACAGCACAGCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000004985.11
ENSMUST00000140973.9
ENSMUST00000156029.8
ENSMUST00000232997.2
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233709.2
3UTR-3UTR CCA 90 bp CAAGGTAGAAGTCAACATGGCAATTGGCGGTCTGCAAACCCGCCTGCGGCTTTGTTAGGCTGTGCAGCATaGATGCACAAGGGAGGGTTC +
Preference number: 2 (lower is better)
Translates to: QGRSQHGNWRSANPPAALLGCAA*MHKGGF
Trigger: GAACCCTCCCTTGTGCATCCATGCTGCACAGCCTAA...CAAAGCCGCAGGCGGGTTTGCAGACCGCCAATTGCCATGTTGACTTCTACCTTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000004985.11
ENSMUST00000140973.9
ENSMUST00000156029.8
ENSMUST00000232997.2
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233709.2
3UTR-3UTR CCA 90 bp GCAAAGAAGGCAGACACAGGCCCAGCTCGGCTCTCACAGGTAGCTGGAAGTGACAAAAGTCTTCCAATCTaGGTGATTCGGGCAAGTGGG +
Preference number: 2 (lower is better)
Translates to: AKKADTGPARLSQVAGSDKSLPI*VIRASG
Trigger: CCCACTTGCCCGAATCACCCAGATTGGAAGACTTTT...GTCACTTCCAGCTACCTGTGAGAGCCGAGCTGGGCCTGTGTCTGCCTTCTTTGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000232705.2
ENSMUST00000232997.2
3UTR-3UTR TCA 90 bp GGCCTGCCATTAGAAAGAAGCTGCCGGCCATACACGTGGCAGGGGCAGCAGAGGAAAAGATCAATTTGGTaGTGTTGCTGTCAGTTTGGC +
Preference number: 2 (lower is better)
Translates to: GLPLERSCRPYTWQGQQRKRSIW*CCCQFG
Trigger: GCCAAACTGACAGCAACATCACCAAATTGATCTTTT...CCTCTGCTGCCCCTGCCACGTGTATGGCCGGCAGCTTCTTTCTAATGGCAGGCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 10 transcripts:
ENSMUST00000004985.11
ENSMUST00000140973.9
ENSMUST00000156029.8
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
3UTR-3UTR TCA 90 bp TGGGGGAAGGGAAGCTCTGAGGGTTCCCGAGGGACCCTGGCACATCTCTGGGATAAAAGATCAATTTGGTaGTGTTGCTGTCAGTTTGGC +
Preference number: 2 (lower is better)
Translates to: WGKGSSEGSRGTLAHLWDKRSIW*CCCQFG
Trigger: GCCAAACTGACAGCAACATCACCAAATTGATCTTTT...ATCCCAGAGATGTGCCAGGGTCCCTCGGGAACCCTCAGAGCTTCCCTTCCCCCA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 10 transcripts:
ENSMUST00000004985.11
ENSMUST00000140973.9
ENSMUST00000156029.8
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
3UTR-3UTR TCA 90 bp GGGACTCAAGCGCCTGGCAGACATCCATCTAATGTAGCAGCTGGCCAGGAAGGATGGTGGAGAAGAGGTTaGAGGCAGGAGATGAAAGAA +
Preference number: 2 (lower is better)
Translates to: GTQAPGRHPSNVAAGQEGWWRRG*RQEMKE
Trigger: TTCTTTCATCTCCTGCCTTCAACCTCTTCTCCACCA...TCCTTCCTGGCCAGCTGCTACATTAGATGGATGTCTGCCAGGCGCTTGAGTCCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000004985.11
ENSMUST00000140973.9
ENSMUST00000156029.8
ENSMUST00000232997.2
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233709.2
3UTR-3UTR TCA 90 bp CTCCAGGGGAACCACATGATTGGTCAATATTGGGTCTTGCCCTCGGAGACCCAGTTTGAGGGTAGGGATTaGGGAGGTGATGGTGGAGAA +
Preference number: 2 (lower is better)
Translates to: LQGNHMIGQYWVLPSETQFEGRD*GGDGGE
Trigger: TTCTCCACCATCACCTCCTCAATCCCTACCCTCAAA...CTGGGTCTCCGAGGGCAAGACCCAATATTGACCAATCATGTGGTTCCCCTGGAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000004985.11
ENSMUST00000140973.9
ENSMUST00000156029.8
ENSMUST00000232997.2
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233709.2
3UTR-3UTR TCA 90 bp GGGACTCGGAGAGAGGGAAGGATTCCGAGACTGAAAAATAGAGACAGAGGAGATTTTGCCGAAGGGCATTaGTCTCCCTGCGCAGCATGC +
Preference number: 2 (lower is better)
Translates to: GTRREGRIPRLKNRDRGDFAEGH*SPCAAC
Trigger: GCATGCTGCGCAGGGAGATCAATGCCCTTCGGCAAA...ATCTCCTCTGTCTCTATTTTTCAGTCTCGGAATCCTTCCCTCTCTCCGAGTCCC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000232997.2
3UTR-3UTR GCA 90 bp CCTGGCAGACATCCATCTAATGTAGCAGCTGGCCAGGAAGGAAATGGGACATCACAGCAGAGGTTCTCATaGCTCAGGGACAGAGGAGAG +
Preference number: 2 (lower is better)
Translates to: PGRHPSNVAAGQEGNGTSQQRFS*LRDRGE
Trigger: CTCTCCTCTGTCCCTGAGGCATGAGAACCTCTGCTG...TGATGTCCCATTTCCTTCCTGGCCAGCTGCTACATTAGATGGATGTCTGCCAGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 10 transcripts:
ENSMUST00000004985.11
ENSMUST00000140973.9
ENSMUST00000156029.8
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
3UTR-3UTR GCA 90 bp GGCTGTGCTGTTTGCTGGACAGAACCTGGCCCTCTTGGTGAGTTTTGTTGGTTCCCATTAGAAAGAAGCTaGCGGCCATACACGTGGCAG +
Preference number: 2 (lower is better)
Translates to: GCAVCWTEPGPLGEFCWFPLERS*RPYTWQ
Trigger: CTGCCACGTGTATGGCCGGCAGCTTCTTTCTAATGG...GAACCAACAAAACTCACCAAGAGGGCCAGGTTCTGTCCAGCAAACAGCACAGCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000004985.11
ENSMUST00000140973.9
ENSMUST00000156029.8
ENSMUST00000232997.2
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233709.2
3UTR-3UTR GCA 90 bp GCCCTGTGCCACAGCAGATCCGAGCCGCATCCTGTCCTAAAAGAGCAGTTTTTACCATTAGAAAGAAGCTaGCGGCCATACACGTGGCAG +
Preference number: 2 (lower is better)
Translates to: ALCHSRSEPHPVLKEQFLPLERS*RPYTWQ
Trigger: CTGCCACGTGTATGGCCGGCAGCTTCTTTCTAATGG...TAAAAACTGCTCTTTTAGGACAGGATGCGGCTCGGATCTGCTGTGGCACAGGGC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 8 transcripts:
ENSMUST00000004985.11
ENSMUST00000140973.9
ENSMUST00000156029.8
ENSMUST00000232997.2
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233709.2
3UTR-3UTR GCA 90 bp CTGACCAGCTACCTGGGGATAGGGGGACGTGTCGGCTCCTTGATTAGGCTGTGCTGGAGAGTGTGTGCCTaGTATCTTACAGTTATGTAC +
Preference number: 2 (lower is better)
Translates to: LTSYLGIGGRVGSLIRLCWRVCA*YLTVMY
Trigger: GTACATAACTGTAAGATAGCAGGCACACACTCTCCA...GCACAGCCTAATCAAGGAGCCGACACGTCCCCCTATCCCCAGGTAGCTGGTCAG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 8 transcripts:
ENSMUST00000004985.11
ENSMUST00000140973.9
ENSMUST00000156029.8
ENSMUST00000232997.2
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233709.2
3UTR-3UTR CCA 90 bp GCGCCTGGCAGACATCCATCTAATGTAGCAGCTGGCCAGGAAGGAAATGGGACAGTCTATCTCCCTGGCTaGCTAAGACTCTCAGCTGTT +
Preference number: 2 (lower is better)
Translates to: APGRHPSNVAAGQEGNGTVYLPG*LRLSAV
Trigger: AACAGCTGAGAGTCTTAGCCAGCCAGGGAGATAGAC...TGTCCCATTTCCTTCCTGGCCAGCTGCTACATTAGATGGATGTCTGCCAGGCGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 10 transcripts:
ENSMUST00000004985.11
ENSMUST00000140973.9
ENSMUST00000156029.8
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
3UTR-3UTR CCA 90 bp GGGACTCAAGCGCCTGGCAGACATCCATCTAATGTAGCAGCTGGCCAGGAAGGAACCCTGGCACATCTCTaGGATCAATGTCAGAACCTT +
Preference number: 2 (lower is better)
Translates to: GTQAPGRHPSNVAAGQEGTLAHL*DQCQNL
Trigger: AAGGTTCTGACATTGATCCCAGAGATGTGCCAGGGT...TCCTTCCTGGCCAGCTGCTACATTAGATGGATGTCTGCCAGGCGCTTGAGTCCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 10 transcripts:
ENSMUST00000004985.11
ENSMUST00000140973.9
ENSMUST00000156029.8
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
3UTR-3UTR CCA 90 bp CCTGGCAGACATCCATCTAATGTAGCAGCTGGCCAGGAAGGAAATGGGACATCAAGGGAGAACCTGGGTTaGGTGTGGGAGATGAGACAG +
Preference number: 2 (lower is better)
Translates to: PGRHPSNVAAGQEGNGTSRENLG*VWEMRQ
Trigger: CTGTCTCATCTCCCACACCCAACCCAGGTTCTCCCT...TGATGTCCCATTTCCTTCCTGGCCAGCTGCTACATTAGATGGATGTCTGCCAGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 10 transcripts:
ENSMUST00000004985.11
ENSMUST00000140973.9
ENSMUST00000156029.8
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
3UTR-3UTR CCA 90 bp AAGGAGACAGAAAGGGAGAAGCCCCAAGATCTTGACACAGGTTTAGACAAGGGTCTGGAGGGCTGTGAGTaGGGGAGGGTCCTTACAGGT +
Preference number: 2 (lower is better)
Translates to: KETEREKPQDLDTGLDKGLEGCE*GRVLTG
Trigger: ACCTGTAAGGACCCTCCCCCACTCACAGCCCTCCAG...ACCCTTGTCTAAACCTGTGTCAAGATCTTGGGGCTTCTCCCTTTCTGTCTCCTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 8 transcripts:
ENSMUST00000004985.11
ENSMUST00000140973.9
ENSMUST00000156029.8
ENSMUST00000232997.2
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233709.2
3UTR-3UTR CCA 90 bp CAGAGGAGAGGCAAAGAAGGCAGACACAGGCCCAGCTCGGCTCTCACAGGTAGCTTCCCTTTTAAACTCTaGCTCGAGTCCCAAAAGTGT +
Preference number: 2 (lower is better)
Translates to: QRRGKEGRHRPSSALTGSFPFKL*LESQKC
Trigger: ACACTTTTGGGACTCGAGCCAGAGTTTAAAAGGGAA...GCTACCTGTGAGAGCCGAGCTGGGCCTGTGTCTGCCTTCTTTGCCTCTCCTCTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000140973.9
ENSMUST00000156029.8
ENSMUST00000232997.2
ENSMUST00000233709.2
3UTR-3UTR CCA 90 bp GGCCTGCCATTAGAAAGAAGCTGCCGGCCATACACGTGGCAGGGGCAGCAGAGGCTTGGTGAGTTTTGTTaGTTCCCTTTTAAACTCTGG +
Preference number: 2 (lower is better)
Translates to: GLPLERSCRPYTWQGQQRLGEFC*FPFKLW
Trigger: CCAGAGTTTAAAAGGGAACCAACAAAACTCACCAAG...CCTCTGCTGCCCCTGCCACGTGTATGGCCGGCAGCTTCTTTCTAATGGCAGGCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 8 transcripts:
ENSMUST00000004985.11
ENSMUST00000140973.9
ENSMUST00000156029.8
ENSMUST00000232997.2
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233709.2
3UTR-3UTR TCA 90 bp GAGGGTCCTTACAGGTGGGGTAGCTTCTACCTGGGACTCAAGCGCCTGGCAGACAAAAGATCAATTTGGTaGTGTTGCTGTCAGTTTGGC +
Preference number: 2 (lower is better)
Translates to: EGPYRWGSFYLGLKRLADKRSIW*CCCQFG
Trigger: GCCAAACTGACAGCAACATCACCAAATTGATCTTTT...GTCTGCCAGGCGCTTGAGTCCCAGGTAGAAGCTACCCCACCTGTAAGGACCCTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 10 transcripts:
ENSMUST00000004985.11
ENSMUST00000140973.9
ENSMUST00000156029.8
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
3UTR-3UTR TCA 90 bp CCTGGCAGACATCCATCTAATGTAGCAGCTGGCCAGGAAGGAAATGGGACATCAATCATGCTGATGCAGTaGGGCTTATGGCTGCTGCAG +
Preference number: 2 (lower is better)
Translates to: PGRHPSNVAAGQEGNGTSIMLMQ*GLWLLQ
Trigger: CTGCAGCAGCCATAAGCCTCACTGCATCAGCATGAT...TGATGTCCCATTTCCTTCCTGGCCAGCTGCTACATTAGATGGATGTCTGCCAGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000004985.11
ENSMUST00000140973.9
ENSMUST00000156029.8
ENSMUST00000232997.2
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233709.2
3UTR-3UTR TCA 90 bp GGGAACCACATGATTGGTCAATATTGGGTCTTGCCCTCGGAGACCCAGTCCAGTTTTGAGGGTAGGGATTaGGGAGGTGATGGTGGAGAA +
Preference number: 2 (lower is better)
Translates to: GNHMIGQYWVLPSETQSSFEGRD*GGDGGE
Trigger: TTCTCCACCATCACCTCCTCAATCCCTACCCTCAAA...ACTGGACTGGGTCTCCGAGGGCAAGACCCAATATTGACCAATCATGTGGTTCCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000004985.11
ENSMUST00000140973.9
ENSMUST00000156029.8
ENSMUST00000232997.2
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233709.2
3UTR-3UTR TCA 90 bp GCCCTGTGCCACAGCAGATCCGAGCCGCATCCTGTCCTAAAAGAGCAGTTTTTAGAAGCCCCAAGATCTTaGCACAGGTTTAGACAAGGG +
Preference number: 2 (lower is better)
Translates to: ALCHSRSEPHPVLKEQFLEAPRS*HRFRQG
Trigger: CCCTTGTCTAAACCTGTGTCAAGATCTTGGGGCTTC...TAAAAACTGCTCTTTTAGGACAGGATGCGGCTCGGATCTGCTGTGGCACAGGGC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 8 transcripts:
ENSMUST00000004985.11
ENSMUST00000140973.9
ENSMUST00000156029.8
ENSMUST00000232997.2
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233709.2
3UTR-3UTR TCA 90 bp TTTTGGCACACAGCAGCCCTCCAGGGGAACCACATGATTGGTCAATATTGGGTCGGCCTTCTAGCATCTTaGGCTTGTCCACAGTGTCCT +
Preference number: 2 (lower is better)
Translates to: FWHTAALQGNHMIGQYWVGLLAS*ACPQCP
Trigger: AGGACACTGTGGACAAGCTCAAGATGCTAGAAGGCC...GACCCAATATTGACCAATCATGTGGTTCCCCTGGAGGGCTGCTGTGTGCCAAAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000140973.9
ENSMUST00000156029.8
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233701.2
ENSMUST00000233709.2
3UTR-3UTR TCA 90 bp GGGAACCACATGATTGGTCAATATTGGGTCTTGCCCTCGGAGACCCAGTCCAGTATAGGCCACTTGTACTaGCTTCCGGATGCTGGTCTT +
Preference number: 2 (lower is better)
Translates to: GNHMIGQYWVLPSETQSSIGHLY*LPDAGL
Trigger: AAGACCAGCATCCGGAAGTCAGTACAAGTGGCCTAT...ACTGGACTGGGTCTCCGAGGGCAAGACCCAATATTGACCAATCATGTGGTTCCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000140973.9
ENSMUST00000156029.8
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233701.2
ENSMUST00000233709.2
3UTR-3UTR GCA 90 bp GAGGGAAGGATTCCGAGACTGAAAAATAGAGACAGAGGAGATAGTGTTGGGGGATGTCCCGCGTGGCTGTaGTGTTTGCTGGACAGAACC +
Preference number: 2 (lower is better)
Translates to: EGRIPRLKNRDRGDSVGGCPAWL*CLLDRT
Trigger: GGTTCTGTCCAGCAAACAGCACAGCCACGCGGGACA...TCCCCCAACACTATCTCCTCTGTCTCTATTTTTCAGTCTCGGAATCCTTCCCTC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 8 transcripts:
ENSMUST00000004985.11
ENSMUST00000140973.9
ENSMUST00000156029.8
ENSMUST00000232997.2
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233709.2
3UTR-3UTR GCA 90 bp ATTGCAAGGGCTCGCTCCCCAGTTGCAGGGCTGATTTTTCTAAGAGCTCCTCATGGCTGTGCTAGCTTTTaGCGAAGGGCATTGATCTCC +
Preference number: 2 (lower is better)
Translates to: IARARSPVAGLIFLRAPHGCASF*RRALIS
Trigger: GGAGATCAATGCCCTTCGGCAAAAGCTAGCACAGCC...ATGAGGAGCTCTTAGAAAAATCAGCCCTGCAACTGGGGAGCGAGCCCTTGCAAT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000232705.2
ENSMUST00000232997.2
3UTR-3UTR CCA 90 bp GTCAACATGGCAATTGGCGGTCTGCAAACCCGCCTGCGGCTTTGGTGCTTAAAGGGGGAACCACATGATTaGTCAATATTGGGTCTTGCC +
Preference number: 2 (lower is better)
Translates to: VNMAIGGLQTRLRLWCLKGEPHD*SILGLA
Trigger: GGCAAGACCCAATATTGACCAATCATGTGGTTCCCC...CTTTAAGCACCAAAGCCGCAGGCGGGTTTGCAGACCGCCAATTGCCATGTTGAC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 8 transcripts:
ENSMUST00000004985.11
ENSMUST00000140973.9
ENSMUST00000156029.8
ENSMUST00000232997.2
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233709.2
3UTR-3UTR CCA 90 bp CAACATGGCAATTGGCGGTCTGCAAACCCGCCTGCGGCTTTGGTGCTTAAAGAAGTCTATCTCCCTGGCTaGCTAAGACTCTCAGCTGTT +
Preference number: 2 (lower is better)
Translates to: QHGNWRSANPPAALVLKEVYLPG*LRLSAV
Trigger: AACAGCTGAGAGTCTTAGCCAGCCAGGGAGATAGAC...TTCTTTAAGCACCAAAGCCGCAGGCGGGTTTGCAGACCGCCAATTGCCATGTTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000004985.11
ENSMUST00000140973.9
ENSMUST00000156029.8
ENSMUST00000232997.2
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233709.2
3UTR-3UTR CCA 90 bp CAAGGTAGAAGTCAACATGGCAATTGGCGGTCTGCAAACCCGCCTGCGGCTTTGACCCTGGCACATCTCTaGGATCAATGTCAGAACCTT +
Preference number: 2 (lower is better)
Translates to: QGRSQHGNWRSANPPAALTLAHL*DQCQNL
Trigger: AAGGTTCTGACATTGATCCCAGAGATGTGCCAGGGT...CAAAGCCGCAGGCGGGTTTGCAGACCGCCAATTGCCATGTTGACTTCTACCTTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000004985.11
ENSMUST00000140973.9
ENSMUST00000156029.8
ENSMUST00000232997.2
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233709.2
3UTR-3UTR CCA 90 bp GAGACAGAAAGGGAGAAGCCCCAAGATCTTGACACAGGTTTAGACAAGGGTCACGTTCCCGAGGGACCCTaGCACATCTCTGGGATCAAT +
Preference number: 2 (lower is better)
Translates to: ETEREKPQDLDTGLDKGHVPEGP*HISGIN
Trigger: ATTGATCCCAGAGATGTGCCAGGGTCCCTCGGGAAC...GTGACCCTTGTCTAAACCTGTGTCAAGATCTTGGGGCTTCTCCCTTTCTGTCTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000004985.11
ENSMUST00000140973.9
ENSMUST00000156029.8
ENSMUST00000232997.2
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233709.2
3UTR-3UTR CCA 90 bp TGCCACAGCAGATCCGAGCCGCATCCTGTCCTAAAAGAGCAGTTTTTAAAGTGGAGGGAGAACCTGGGTTaGGTGTGGGAGATGAGACAG +
Preference number: 2 (lower is better)
Translates to: CHSRSEPHPVLKEQFLKWRENLG*VWEMRQ
Trigger: CTGTCTCATCTCCCACACCCAACCCAGGTTCTCCCT...CCACTTTAAAAACTGCTCTTTTAGGACAGGATGCGGCTCGGATCTGCTGTGGCA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 8 transcripts:
ENSMUST00000004985.11
ENSMUST00000140973.9
ENSMUST00000156029.8
ENSMUST00000232997.2
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233709.2
3UTR-3UTR CCA 90 bp CTGACCAGCTACCTGGGGATAGGGGGACGTGTCGGCTCCTTGATTAGGCTGTGCCTTGGTGAGTTTTGTTaGTTCCCTTTTAAACTCTGG +
Preference number: 2 (lower is better)
Translates to: LTSYLGIGGRVGSLIRLCLGEFC*FPFKLW
Trigger: CCAGAGTTTAAAAGGGAACCAACAAAACTCACCAAG...GCACAGCCTAATCAAGGAGCCGACACGTCCCCCTATCCCCAGGTAGCTGGTCAG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 8 transcripts:
ENSMUST00000004985.11
ENSMUST00000140973.9
ENSMUST00000156029.8
ENSMUST00000232997.2
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233709.2
3UTR-3UTR CCA 90 bp GAGGGAAGGATTCCGAGACTGAAAAATAGAGACAGAGGAGATAGTGTTGGGGGAGGCTCAGGTGGATCATaGCGCGGTCATAGGCCACTT +
Preference number: 2 (lower is better)
Translates to: EGRIPRLKNRDRGDSVGGGSGGS*RGHRPL
Trigger: AAGTGGCCTATGACCGCGCCATGATCCACCTGAGCC...TCCCCCAACACTATCTCCTCTGTCTCTATTTTTCAGTCTCGGAATCCTTCCCTC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENSMUST00000140973.9
ENSMUST00000156029.8
ENSMUST00000232997.2
ENSMUST00000233709.2
3UTR-3UTR CCA 90 bp CGTCCTCTGGGCCATGGTCCTCGCCATTCTCAAGGGTCCCATCGGGACCCCTCTAGTAGAAAAATCCATTaGCTTGGATATGAATTCCAG +
Preference number: 2 (lower is better)
Translates to: RPLGHGPRHSQGSHRDPSSRKIH*LGYEFQ
Trigger: CTGGAATTCATATCCAAGCCAATGGATTTTTCTACT...AGAGGGGTCCCGATGGGACCCTTGAGAATGGCGAGGACCATGGCCCAGAGGACG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000232705.2
ENSMUST00000232997.2
3UTR CAA 90 bp GGCTCCAGGTGCATATATAGCAGAGGATGGCCTTGTCAGGCATCATaGGGAGAAGAGGTCTTTGATCCAATGAAGGCTGGACAGATGCTC +
Preference number: 2 (lower is better)
Translates to: GSRCIYSRGWPCQAS*GEEVFDPMKAGQML
Trigger: GAGCATCTGTCCAGCCTTCATTGGATCAAAGACCTCTTCTCCCAATGATGCCTGACAAGGCCATCCTCTGCTATATATGCACCTGGAGCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000004985.11
3UTR-3UTR TCA 90 bp GCCCTGTGCCACAGCAGATCCGAGCCGCATCCTGTCCTAAAAGAGCAGTTTTTATCCAGGGGAACCACATaGTTGGTCAATATTGGGTCT +
Preference number: 2 (lower is better)
Translates to: ALCHSRSEPHPVLKEQFLSRGTT*LVNIGS
Trigger: AGACCCAATATTGACCAATCATGTGGTTCCCCTGGA...TAAAAACTGCTCTTTTAGGACAGGATGCGGCTCGGATCTGCTGTGGCACAGGGC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 8 transcripts:
ENSMUST00000004985.11
ENSMUST00000140973.9
ENSMUST00000156029.8
ENSMUST00000232997.2
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233709.2
3UTR-3UTR TCA 90 bp ATGATTGGTCAATATTGGGTCTTGCCCTCGGAGACCCAGTCCAGTCAGGGCCTGGAAGGATTCCGAGACTaGAAAATAGAGACAGAGGAG +
Preference number: 2 (lower is better)
Translates to: MIGQYWVLPSETQSSQGLEGFRD*KIETEE
Trigger: CTCCTCTGTCTCTATTTTTCAGTCTCGGAATCCTTC...CAGGCCCTGACTGGACTGGGTCTCCGAGGGCAAGACCCAATATTGACCAATCAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000004985.11
ENSMUST00000140973.9
ENSMUST00000156029.8
ENSMUST00000232997.2
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233709.2
3UTR-3UTR TCA 90 bp CTGGCACATCTCTGGGATCAATGTCAGAACCTTGCCTGCCCTGAGGTATGGTTAATAGGCCACTTGTACTaGCTTCCGGATGCTGGTCTT +
Preference number: 2 (lower is better)
Translates to: LAHLWDQCQNLACPEVWLIGHLY*LPDAGL
Trigger: AAGACCAGCATCCGGAAGTCAGTACAAGTGGCCTAT...TAACCATACCTCAGGGCAGGCAAGGTTCTGACATTGATCCCAGAGATGTGCCAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000140973.9
ENSMUST00000156029.8
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233701.2
ENSMUST00000233709.2
3UTR-3UTR TCA 90 bp ATTGCAAGGGCTCGCTCCCCAGTTGCAGGGCTGATTTTTCTAAGAGCTCCTCATATAGGCCACTTGTACTaGCTTCCGGATGCTGGTCTT +
Preference number: 2 (lower is better)
Translates to: IARARSPVAGLIFLRAPHIGHLY*LPDAGL
Trigger: AAGACCAGCATCCGGAAGTCAGTACAAGTGGCCTAT...ATGAGGAGCTCTTAGAAAAATCAGCCCTGCAACTGGGGAGCGAGCCCTTGCAAT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000232705.2
ENSMUST00000232997.2
3UTR-3UTR GCA 90 bp GTTGGTTCCCTTTTAAACTCTGGCTCGAGTCCCAAAAGTGTAAGAAGTTGGTGGTGTCCCGCGTGGCTGTaGTGTTTGCTGGACAGAACC +
Preference number: 2 (lower is better)
Translates to: VGSLLNSGSSPKSVRSWWCPAWL*CLLDRT
Trigger: GGTTCTGTCCAGCAAACAGCACAGCCACGCGGGACA...CCACCAACTTCTTACACTTTTGGGACTCGAGCCAGAGTTTAAAAGGGAACCAAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 8 transcripts:
ENSMUST00000004985.11
ENSMUST00000140973.9
ENSMUST00000156029.8
ENSMUST00000232997.2
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233709.2
3UTR-3UTR CCA 90 bp GAGGGAAGGATTCCGAGACTGAAAAATAGAGACAGAGGAGATAGTGTTGGGGGAGTTCCCGAGGGACCCTaGCACATCTCTGGGATCAAT +
Preference number: 2 (lower is better)
Translates to: EGRIPRLKNRDRGDSVGGVPEGP*HISGIN
Trigger: ATTGATCCCAGAGATGTGCCAGGGTCCCTCGGGAAC...TCCCCCAACACTATCTCCTCTGTCTCTATTTTTCAGTCTCGGAATCCTTCCCTC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 8 transcripts:
ENSMUST00000004985.11
ENSMUST00000140973.9
ENSMUST00000156029.8
ENSMUST00000232997.2
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233709.2
3UTR-3UTR CCA 90 bp GCATCCTGTCCTAAAAGAGCAGTTTTTAAAGTGGGACTCGGAGAGAGGGAAGGAGTTCCCGAGGGACCCTaGCACATCTCTGGGATCAAT +
Preference number: 2 (lower is better)
Translates to: ASCPKRAVFKVGLGEREGVPEGP*HISGIN
Trigger: ATTGATCCCAGAGATGTGCCAGGGTCCCTCGGGAAC...TCCTTCCCTCTCTCCGAGTCCCACTTTAAAAACTGCTCTTTTAGGACAGGATGC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 8 transcripts:
ENSMUST00000004985.11
ENSMUST00000140973.9
ENSMUST00000156029.8
ENSMUST00000232997.2
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233709.2
3UTR-3UTR CCA 90 bp TTTGTTGGTTCCCTTTTAAACTCTGGCTCGAGTCCCAAAAGTGTAAGAAGTTGGCAAGCACGGGCGGTGTaGGGGAAGGGAAGCTCTGAG +
Preference number: 2 (lower is better)
Translates to: FVGSLLNSGSSPKSVRSWQARAV*GKGSSE
Trigger: CTCAGAGCTTCCCTTCCCCCACACCGCCCGTGCTTG...CCAACTTCTTACACTTTTGGGACTCGAGCCAGAGTTTAAAAGGGAACCAACAAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 8 transcripts:
ENSMUST00000004985.11
ENSMUST00000140973.9
ENSMUST00000156029.8
ENSMUST00000232997.2
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233709.2
3UTR-3UTR CCA 90 bp AAGAAATGTCAAGAGCAGAAGCCTCTGAGAGCTGCGTTGGCTTGTCAGTCAGCTAGTCAACATGGCAATTaGCGGTCTGCAAACCCGCCT +
Preference number: 2 (lower is better)
Translates to: KKCQEQKPLRAALACQSASQHGN*RSANPP
Trigger: AGGCGGGTTTGCAGACCGCCAATTGCCATGTTGACT...AGCTGACTGACAAGCCAACGCAGCTCTCAGAGGCTTCTGCTCTTGACATTTCTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000004985.11
ENSMUST00000140973.9
ENSMUST00000156029.8
ENSMUST00000232997.2
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233709.2
3UTR-3UTR CCA 90 bp GAGACAGAAAGGGAGAAGCCCCAAGATCTTGACACAGGTTTAGACAAGGGTCACTTAGGCTGTGCAGCATaGATGCACAAGGGAGGGTTC +
Preference number: 2 (lower is better)
Translates to: ETEREKPQDLDTGLDKGHLGCAA*MHKGGF
Trigger: GAACCCTCCCTTGTGCATCCATGCTGCACAGCCTAA...GTGACCCTTGTCTAAACCTGTGTCAAGATCTTGGGGCTTCTCCCTTTCTGTCTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000004985.11
ENSMUST00000140973.9
ENSMUST00000156029.8
ENSMUST00000232997.2
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233709.2
3UTR-3UTR CCA 90 bp GAGGGAAGGATTCCGAGACTGAAAAATAGAGACAGAGGAGATAGTGTTGGGGGACTGACTTCCGGATGCTaGTCTTGCGGCCTTCTAGCA +
Preference number: 2 (lower is better)
Translates to: EGRIPRLKNRDRGDSVGGLTSGC*SCGLLA
Trigger: TGCTAGAAGGCCGCAAGACCAGCATCCGGAAGTCAG...TCCCCCAACACTATCTCCTCTGTCTCTATTTTTCAGTCTCGGAATCCTTCCCTC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENSMUST00000140973.9
ENSMUST00000156029.8
ENSMUST00000232997.2
ENSMUST00000233709.2
3UTR-3UTR CCA 90 bp GTTGGTTCCCTTTTAAACTCTGGCTCGAGTCCCAAAAGTGTAAGAAGTTGGTGGGGTGATTCGGGCAAGTaGGTGCCCCTCTCAGGATCA +
Preference number: 2 (lower is better)
Translates to: VGSLLNSGSSPKSVRSWWGDSGK*VPLSGS
Trigger: TGATCCTGAGAGGGGCACCCACTTGCCCGAATCACC...CCACCAACTTCTTACACTTTTGGGACTCGAGCCAGAGTTTAAAAGGGAACCAAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENSMUST00000232997.2
3UTR-3UTR CCA 90 bp GTTGGTTCCCTTTTAAACTCTGGCTCGAGTCCCAAAAGTGTAAGAAGTTGGTGGTCGTCCTCTGGGCCATaGTCCTCGCCATTCTCAAGG +
Preference number: 2 (lower is better)
Translates to: VGSLLNSGSSPKSVRSWWSSSGP*SSPFSR
Trigger: CCTTGAGAATGGCGAGGACCATGGCCCAGAGGACGA...CCACCAACTTCTTACACTTTTGGGACTCGAGCCAGAGTTTAAAAGGGAACCAAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000232997.2
3UTR-3UTR TCA 90 bp ATGTCAAGAGCAGAAGCCTCTGAGAGCTGCGTTGGCTTGTCAGTCAGCTTTCCTTCCAGGGGAACCACATaGTTGGTCAATATTGGGTCT +
Preference number: 2 (lower is better)
Translates to: MSRAEASESCVGLSVSFPSRGTT*LVNIGS
Trigger: AGACCCAATATTGACCAATCATGTGGTTCCCCTGGA...AGGAAAGCTGACTGACAAGCCAACGCAGCTCTCAGAGGCTTCTGCTCTTGACAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000004985.11
ENSMUST00000140973.9
ENSMUST00000156029.8
ENSMUST00000232997.2
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233709.2
3UTR-3UTR TCA 90 bp AGATCCGAGCCGCATCCTGTCCTAAAAGAGCAGTTTTTAAAGTGGGACTCGGAGTTTGAGGGTAGGGATTaGGGAGGTGATGGTGGAGAA +
Preference number: 2 (lower is better)
Translates to: RSEPHPVLKEQFLKWDSEFEGRD*GGDGGE
Trigger: TTCTCCACCATCACCTCCTCAATCCCTACCCTCAAA...CTCCGAGTCCCACTTTAAAAACTGCTCTTTTAGGACAGGATGCGGCTCGGATCT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 8 transcripts:
ENSMUST00000004985.11
ENSMUST00000140973.9
ENSMUST00000156029.8
ENSMUST00000232997.2
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233709.2
3UTR-3UTR TCA 90 bp GGCAGACATCCATCTAATGTAGCAGCTGGCCAGGAAGGAAATGGGACATCAAAGATAGGCCACTTGTACTaGCTTCCGGATGCTGGTCTT +
Preference number: 2 (lower is better)
Translates to: GRHPSNVAAGQEGNGTSKIGHLY*LPDAGL
Trigger: AAGACCAGCATCCGGAAGTCAGTACAAGTGGCCTAT...CTTTGATGTCCCATTTCCTTCCTGGCCAGCTGCTACATTAGATGGATGTCTGCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000140973.9
ENSMUST00000156029.8
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233701.2
ENSMUST00000233709.2
3UTR-3UTR TCA 90 bp GTTGGTTCCCTTTTAAACTCTGGCTCGAGTCCCAAAAGTGTAAGAAGTTGGTGGACAGGTAGCTGGAAGTaGCAAAGGCATGGGAGCCAC +
Preference number: 2 (lower is better)
Translates to: VGSLLNSGSSPKSVRSWWTGSWK*QRHGSH
Trigger: GTGGCTCCCATGCCTTTGTCACTTCCAGCTACCTGT...CCACCAACTTCTTACACTTTTGGGACTCGAGCCAGAGTTTAAAAGGGAACCAAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000140973.9
ENSMUST00000156029.8
ENSMUST00000232997.2
ENSMUST00000233709.2
3UTR-3UTR TCA 90 bp GTTGGTTCCCTTTTAAACTCTGGCTCGAGTCCCAAAAGTGTAAGAAGTTGGTGGCATTCTTGGCCTTCTTaGAGAGGACGGAGGTTCGGC +
Preference number: 2 (lower is better)
Translates to: VGSLLNSGSSPKSVRSWWHSWPS*RGRRFG
Trigger: GCCGAACCTCCGTCCTCTTCAAGAAGGCCAAGAATG...CCACCAACTTCTTACACTTTTGGGACTCGAGCCAGAGTTTAAAAGGGAACCAAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000232997.2
3UTR-3UTR CCA 90 bp GGGACTCGGAGAGAGGGAAGGATTCCGAGACTGAAAAATAGAGACAGAGGAGATGTCTATCTCCCTGGCTaGCTAAGACTCTCAGCTGTT +
Preference number: 2 (lower is better)
Translates to: GTRREGRIPRLKNRDRGDVYLPG*LRLSAV
Trigger: AACAGCTGAGAGTCTTAGCCAGCCAGGGAGATAGAC...ATCTCCTCTGTCTCTATTTTTCAGTCTCGGAATCCTTCCCTCTCTCCGAGTCCC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 8 transcripts:
ENSMUST00000004985.11
ENSMUST00000140973.9
ENSMUST00000156029.8
ENSMUST00000232997.2
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233709.2
3UTR-3UTR TCA 90 bp GGGACTCGGAGAGAGGGAAGGATTCCGAGACTGAAAAATAGAGACAGAGGAGATTCCAGGGGAACCACATaGTTGGTCAATATTGGGTCT +
Preference number: 2 (lower is better)
Translates to: GTRREGRIPRLKNRDRGDSRGTT*LVNIGS
Trigger: AGACCCAATATTGACCAATCATGTGGTTCCCCTGGA...ATCTCCTCTGTCTCTATTTTTCAGTCTCGGAATCCTTCCCTCTCTCCGAGTCCC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 8 transcripts:
ENSMUST00000004985.11
ENSMUST00000140973.9
ENSMUST00000156029.8
ENSMUST00000232997.2
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233709.2
3UTR-3UTR TCA 90 bp ATAAAGTCACTTTCTACAATAAATAGAGCATCATGTGCTTCACAGCAGACCAGACCTGCTGGAGGGCTGTaGGTGGGGGAGGGTCCTTAC +
Preference number: 2 (lower is better)
Translates to: IKSLSTINRASCASQQTRPAGGL*VGEGPY
Trigger: GTAAGGACCCTCCCCCACTCACAGCCCTCCAGCAGG...TCTGGTCTGCTGTGAAGCACATGATGCTCTATTTATTGTAGAAAGTGACTTTAT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000004985.11
ENSMUST00000140973.9
ENSMUST00000156029.8
ENSMUST00000232997.2
ENSMUST00000233088.2
3UTR-3UTR TCA 90 bp AAGAAATGTCAAGAGCAGAAGCCTCTGAGAGCTGCGTTGGCTTGTCAGTCAGCTGTTGAAGGCAGGAGATaGAAGAAAAGAGCCCTGTTC +
Preference number: 2 (lower is better)
Translates to: KKCQEQKPLRAALACQSAVEGRR*KKRALF
Trigger: GAACAGGGCTCTTTTCTTTCATCTCCTGCCTTCAAC...AGCTGACTGACAAGCCAACGCAGCTCTCAGAGGCTTCTGCTCTTGACATTTCTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000004985.11
ENSMUST00000140973.9
ENSMUST00000156029.8
ENSMUST00000232997.2
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233709.2
3UTR-3UTR TCA 90 bp GCTGTTTCTACTTCTAAGTGGTTCTTCAGTGGAATATCCCCAGGGACCTCGGGTTGGTGGAGAAGAGGTTaGAGGCAGGAGATGAAAGAA +
Preference number: 2 (lower is better)
Translates to: AVSTSKWFFSGISPGTSGWWRRG*RQEMKE
Trigger: TTCTTTCATCTCCTGCCTTCAACCTCTTCTCCACCA...ACCCGAGGTCCCTGGGGATATTCCACTGAAGAACCACTTAGAAGTAGAAACAGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000004985.11
ENSMUST00000140973.9
ENSMUST00000156029.8
ENSMUST00000232997.2
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233709.2
3UTR-3UTR TCA 90 bp AAGAAATGTCAAGAGCAGAAGCCTCTGAGAGCTGCGTTGGCTTGTCAGTCAGCTTGGTGGAGAAGAGGTTaGAGGCAGGAGATGAAAGAA +
Preference number: 2 (lower is better)
Translates to: KKCQEQKPLRAALACQSAWWRRG*RQEMKE
Trigger: TTCTTTCATCTCCTGCCTTCAACCTCTTCTCCACCA...AGCTGACTGACAAGCCAACGCAGCTCTCAGAGGCTTCTGCTCTTGACATTTCTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000004985.11
ENSMUST00000140973.9
ENSMUST00000156029.8
ENSMUST00000232997.2
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233709.2
3UTR-3UTR TCA 90 bp GAGACAGAAAGGGAGAAGCCCCAAGATCTTGACACAGGTTTAGACAAGGGTCACTGGTGGAGAAGAGGTTaGAGGCAGGAGATGAAAGAA +
Preference number: 2 (lower is better)
Translates to: ETEREKPQDLDTGLDKGHWWRRG*RQEMKE
Trigger: TTCTTTCATCTCCTGCCTTCAACCTCTTCTCCACCA...GTGACCCTTGTCTAAACCTGTGTCAAGATCTTGGGGCTTCTCCCTTTCTGTCTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000004985.11
ENSMUST00000140973.9
ENSMUST00000156029.8
ENSMUST00000232997.2
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233709.2
3UTR-3UTR CCA 90 bp TACAGTTATGTACACCACGCCCTGTCCCGCGTGGCTGTGCTGTTTGCTGGACAGAGTGTAAGAAGTTGGTaGTTGGTTGGTTGTATTTCT +
Preference number: 2 (lower is better)
Translates to: YSYVHHALSRVAVLFAGQSVRSW*LVGCIS
Trigger: AGAAATACAACCAACCAACCACCAACTTCTTACACT...CTGTCCAGCAAACAGCACAGCCACGCGGGACAGGGCGTGGTGTACATAACTGTA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000004985.11
ENSMUST00000140973.9
ENSMUST00000156029.8
ENSMUST00000232997.2
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233709.2
3UTR-3UTR CCA 90 bp CAAGCGCCTGGCAGACATCCATCTAATGTAGCAGCTGGCCAGGAAGGAAATGGGCTTGGTGAGTTTTGTTaGTTCCCTTTTAAACTCTGG +
Preference number: 2 (lower is better)
Translates to: QAPGRHPSNVAAGQEGNGLGEFC*FPFKLW
Trigger: CCAGAGTTTAAAAGGGAACCAACAAAACTCACCAAG...CCCATTTCCTTCCTGGCCAGCTGCTACATTAGATGGATGTCTGCCAGGCGCTTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 8 transcripts:
ENSMUST00000004985.11
ENSMUST00000140973.9
ENSMUST00000156029.8
ENSMUST00000232997.2
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233709.2
3UTR-3UTR CCA 90 bp GTTGGTTCCCTTTTAAACTCTGGCTCGAGTCCCAAAAGTGTAAGAAGTTGGTGGTTAGGCTGTGCAGCATaGATGCACAAGGGAGGGTTC +
Preference number: 2 (lower is better)
Translates to: VGSLLNSGSSPKSVRSWWLGCAA*MHKGGF
Trigger: GAACCCTCCCTTGTGCATCCATGCTGCACAGCCTAA...CCACCAACTTCTTACACTTTTGGGACTCGAGCCAGAGTTTAAAAGGGAACCAAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 8 transcripts:
ENSMUST00000004985.11
ENSMUST00000140973.9
ENSMUST00000156029.8
ENSMUST00000232997.2
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233709.2
3UTR-3UTR TCA 90 bp GGGAACCACATGATTGGTCAATATTGGGTCTTGCCCTCGGAGACCCAGTCCAGTAAAAGATCAATTTGGTaGTGTTGCTGTCAGTTTGGC +
Preference number: 2 (lower is better)
Translates to: GNHMIGQYWVLPSETQSSKRSIW*CCCQFG
Trigger: GCCAAACTGACAGCAACATCACCAAATTGATCTTTT...ACTGGACTGGGTCTCCGAGGGCAAGACCCAATATTGACCAATCATGTGGTTCCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 10 transcripts:
ENSMUST00000004985.11
ENSMUST00000140973.9
ENSMUST00000156029.8
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
3UTR-3UTR TCA 90 bp CAAGGTAGAAGTCAACATGGCAATTGGCGGTCTGCAAACCCGCCTGCGGCTTTGTGGTGCTTAAAGAAGTaGAAAGAAATGTCAAGAGCA +
Preference number: 2 (lower is better)
Translates to: QGRSQHGNWRSANPPAALWCLKK*KEMSRA
Trigger: TGCTCTTGACATTTCTTTTCACTTCTTTAAGCACCA...CAAAGCCGCAGGCGGGTTTGCAGACCGCCAATTGCCATGTTGACTTCTACCTTG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000004985.11
ENSMUST00000140973.9
ENSMUST00000156029.8
ENSMUST00000232997.2
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233709.2
3UTR-3UTR TCA 90 bp TGCCACAGCAGATCCGAGCCGCATCCTGTCCTAAAAGAGCAGTTTTTAAAGTGGGAAGGATTCCGAGACTaGAAAATAGAGACAGAGGAG +
Preference number: 2 (lower is better)
Translates to: CHSRSEPHPVLKEQFLKWEGFRD*KIETEE
Trigger: CTCCTCTGTCTCTATTTTTCAGTCTCGGAATCCTTC...CCACTTTAAAAACTGCTCTTTTAGGACAGGATGCGGCTCGGATCTGCTGTGGCA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 8 transcripts:
ENSMUST00000004985.11
ENSMUST00000140973.9
ENSMUST00000156029.8
ENSMUST00000232997.2
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233709.2
3UTR-3UTR TCA 90 bp GAGACAGAAAGGGAGAAGCCCCAAGATCTTGACACAGGTTTAGACAAGGGTCACGAAGGATTCCGAGACTaGAAAATAGAGACAGAGGAG +
Preference number: 2 (lower is better)
Translates to: ETEREKPQDLDTGLDKGHEGFRD*KIETEE
Trigger: CTCCTCTGTCTCTATTTTTCAGTCTCGGAATCCTTC...GTGACCCTTGTCTAAACCTGTGTCAAGATCTTGGGGCTTCTCCCTTTCTGTCTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 8 transcripts:
ENSMUST00000004985.11
ENSMUST00000140973.9
ENSMUST00000156029.8
ENSMUST00000232997.2
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233709.2
3UTR-3UTR TCA 90 bp AAGAAATGTCAAGAGCAGAAGCCTCTGAGAGCTGCGTTGGCTTGTCAGTCAGCTGAAGGATTCCGAGACTaGAAAATAGAGACAGAGGAG +
Preference number: 2 (lower is better)
Translates to: KKCQEQKPLRAALACQSAEGFRD*KIETEE
Trigger: CTCCTCTGTCTCTATTTTTCAGTCTCGGAATCCTTC...AGCTGACTGACAAGCCAACGCAGCTCTCAGAGGCTTCTGCTCTTGACATTTCTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000004985.11
ENSMUST00000140973.9
ENSMUST00000156029.8
ENSMUST00000232997.2
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233709.2
3UTR-3UTR CCA 90 bp GCATCCTGTCCTAAAAGAGCAGTTTTTAAAGTGGGACTCGGAGAGAGGGAAGGAGGGGAACCACATGATTaGTCAATATTGGGTCTTGCC +
Preference number: 2 (lower is better)
Translates to: ASCPKRAVFKVGLGEREGGEPHD*SILGLA
Trigger: GGCAAGACCCAATATTGACCAATCATGTGGTTCCCC...TCCTTCCCTCTCTCCGAGTCCCACTTTAAAAACTGCTCTTTTAGGACAGGATGC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 8 transcripts:
ENSMUST00000004985.11
ENSMUST00000140973.9
ENSMUST00000156029.8
ENSMUST00000232997.2
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233709.2
3UTR-3UTR CCA 90 bp ATCAATTTGGTGATGTTGCTGTCAGTTTGGCACAAGGGAGAGCAGAGAGCAATGGTCTATCTCCCTGGCTaGCTAAGACTCTCAGCTGTT +
Preference number: 2 (lower is better)
Translates to: INLVMLLSVWHKGEQRAMVYLPG*LRLSAV
Trigger: AACAGCTGAGAGTCTTAGCCAGCCAGGGAGATAGAC...CATTGCTCTCTGCTCTCCCTTGTGCCAAACTGACAGCAACATCACCAAATTGAT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 10 transcripts:
ENSMUST00000004985.11
ENSMUST00000140973.9
ENSMUST00000156029.8
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
3UTR-3UTR CCA 90 bp AAGGAGACAGAAAGGGAGAAGCCCCAAGATCTTGACACAGGTTTAGACAAGGGTACCCTGGCACATCTCTaGGATCAATGTCAGAACCTT +
Preference number: 2 (lower is better)
Translates to: KETEREKPQDLDTGLDKGTLAHL*DQCQNL
Trigger: AAGGTTCTGACATTGATCCCAGAGATGTGCCAGGGT...ACCCTTGTCTAAACCTGTGTCAAGATCTTGGGGCTTCTCCCTTTCTGTCTCCTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000004985.11
ENSMUST00000140973.9
ENSMUST00000156029.8
ENSMUST00000232997.2
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233709.2
3UTR-3UTR CCA 90 bp ATGATTGGTCAATATTGGGTCTTGCCCTCGGAGACCCAGTCCAGTCAGGGCCTGTCCTCATTCACAGTTTaGTTTTCCTTCCTTTTTGAG +
Preference number: 2 (lower is better)
Translates to: MIGQYWVLPSETQSSQGLSSFTV*FSFLFE
Trigger: CTCAAAAAGGAAGGAAAACCAAACTGTGAATGAGGA...CAGGCCCTGACTGGACTGGGTCTCCGAGGGCAAGACCCAATATTGACCAATCAT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 8 transcripts:
ENSMUST00000004985.11
ENSMUST00000140973.9
ENSMUST00000156029.8
ENSMUST00000232997.2
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233709.2
3UTR-3UTR CCA 90 bp GTCAACATGGCAATTGGCGGTCTGCAAACCCGCCTGCGGCTTTGGTGCTTAAAGTCCTCATTCACAGTTTaGTTTTCCTTCCTTTTTGAG +
Preference number: 2 (lower is better)
Translates to: VNMAIGGLQTRLRLWCLKSSFTV*FSFLFE
Trigger: CTCAAAAAGGAAGGAAAACCAAACTGTGAATGAGGA...CTTTAAGCACCAAAGCCGCAGGCGGGTTTGCAGACCGCCAATTGCCATGTTGAC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 8 transcripts:
ENSMUST00000004985.11
ENSMUST00000140973.9
ENSMUST00000156029.8
ENSMUST00000232997.2
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233709.2
3UTR-3UTR CCA 90 bp CTCCAGGGGAACCACATGATTGGTCAATATTGGGTCTTGCCCTCGGAGACCCAGAGTGTAAGAAGTTGGTaGTTGGTTGGTTGTATTTCT +
Preference number: 2 (lower is better)
Translates to: LQGNHMIGQYWVLPSETQSVRSW*LVGCIS
Trigger: AGAAATACAACCAACCAACCACCAACTTCTTACACT...CTGGGTCTCCGAGGGCAAGACCCAATATTGACCAATCATGTGGTTCCCCTGGAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000004985.11
ENSMUST00000140973.9
ENSMUST00000156029.8
ENSMUST00000232997.2
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233709.2
3UTR-3UTR CCA 90 bp ATAAAGTCACTTTCTACAATAAATAGAGCATCATGTGCTTCACAGCAGACCAGAGGCCCTCTTGCCTTGTaGGCCAGGTCTATCTCCCTG +
Preference number: 2 (lower is better)
Translates to: IKSLSTINRASCASQQTRGPLAL*ARSISL
Trigger: CAGGGAGATAGACCTGGCCCACAAGGCAAGAGGGCC...TCTGGTCTGCTGTGAAGCACATGATGCTCTATTTATTGTAGAAAGTGACTTTAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000004985.11
ENSMUST00000140973.9
ENSMUST00000156029.8
ENSMUST00000232997.2
ENSMUST00000233088.2
3UTR-3UTR CCA 90 bp GGCTGTGCTGTTTGCTGGACAGAACCTGGCCCTCTTGGTGAGTTTTGTTGGTTCTCCTCATTCACAGTTTaGTTTTCCTTCCTTTTTGAG +
Preference number: 2 (lower is better)
Translates to: GCAVCWTEPGPLGEFCWFSSFTV*FSFLFE
Trigger: CTCAAAAAGGAAGGAAAACCAAACTGTGAATGAGGA...GAACCAACAAAACTCACCAAGAGGGCCAGGTTCTGTCCAGCAAACAGCACAGCC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 8 transcripts:
ENSMUST00000004985.11
ENSMUST00000140973.9
ENSMUST00000156029.8
ENSMUST00000232997.2
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233709.2
3UTR-3UTR CCA 90 bp TTTGTTGGTTCCCTTTTAAACTCTGGCTCGAGTCCCAAAAGTGTAAGAAGTTGGAGTCAACATGGCAATTaGCGGTCTGCAAACCCGCCT +
Preference number: 2 (lower is better)
Translates to: FVGSLLNSGSSPKSVRSWSQHGN*RSANPP
Trigger: AGGCGGGTTTGCAGACCGCCAATTGCCATGTTGACT...CCAACTTCTTACACTTTTGGGACTCGAGCCAGAGTTTAAAAGGGAACCAACAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 8 transcripts:
ENSMUST00000004985.11
ENSMUST00000140973.9
ENSMUST00000156029.8
ENSMUST00000232997.2
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233709.2
3UTR-3UTR CCA 90 bp CTCCAGGGGAACCACATGATTGGTCAATATTGGGTCTTGCCCTCGGAGACCCAGAGTAGAAAAATCCATTaGCTTGGATATGAATTCCAG +
Preference number: 2 (lower is better)
Translates to: LQGNHMIGQYWVLPSETQSRKIH*LGYEFQ
Trigger: CTGGAATTCATATCCAAGCCAATGGATTTTTCTACT...CTGGGTCTCCGAGGGCAAGACCCAATATTGACCAATCATGTGGTTCCCCTGGAG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000232705.2
ENSMUST00000232997.2
3UTR-3UTR GCA 90 bp ATAAAGTCACTTTCTACAATAAATAGAGCATCATGTGCTTCACAGCAGACCAGATGTCCCGCGTGGCTGTaGTGTTTGCTGGACAGAACC +
Preference number: 2 (lower is better)
Translates to: IKSLSTINRASCASQQTRCPAWL*CLLDRT
Trigger: GGTTCTGTCCAGCAAACAGCACAGCCACGCGGGACA...TCTGGTCTGCTGTGAAGCACATGATGCTCTATTTATTGTAGAAAGTGACTTTAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000004985.11
ENSMUST00000140973.9
ENSMUST00000156029.8
ENSMUST00000232997.2
ENSMUST00000233088.2
3UTR-3UTR GCA 90 bp GCCCTCTTGGTGAGTTTTGTTGGTTCCCTTTTAAACTCTGGCTCGAGTCCCAAATGGAGAGTGTGTGCCTaGTATCTTACAGTTATGTAC +
Preference number: 2 (lower is better)
Translates to: ALLVSFVGSLLNSGSSPKWRVCA*YLTVMY
Trigger: GTACATAACTGTAAGATAGCAGGCACACACTCTCCA...TTTGGGACTCGAGCCAGAGTTTAAAAGGGAACCAACAAAACTCACCAAGAGGGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 8 transcripts:
ENSMUST00000004985.11
ENSMUST00000140973.9
ENSMUST00000156029.8
ENSMUST00000232997.2
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233709.2
3UTR-3UTR TCA 90 bp AGATCCGAGCCGCATCCTGTCCTAAAAGAGCAGTTTTTAAAGTGGGACTCGGAGTGGTGCTTAAAGAAGTaGAAAGAAATGTCAAGAGCA +
Preference number: 2 (lower is better)
Translates to: RSEPHPVLKEQFLKWDSEWCLKK*KEMSRA
Trigger: TGCTCTTGACATTTCTTTTCACTTCTTTAAGCACCA...CTCCGAGTCCCACTTTAAAAACTGCTCTTTTAGGACAGGATGCGGCTCGGATCT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 8 transcripts:
ENSMUST00000004985.11
ENSMUST00000140973.9
ENSMUST00000156029.8
ENSMUST00000232997.2
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233709.2
3UTR-3UTR GCA 90 bp GTTGGTTCCCTTTTAAACTCTGGCTCGAGTCCCAAAAGTGTAAGAAGTTGGTGGTGGAGAGTGTGTGCCTaGTATCTTACAGTTATGTAC +
Preference number: 2 (lower is better)
Translates to: VGSLLNSGSSPKSVRSWWWRVCA*YLTVMY
Trigger: GTACATAACTGTAAGATAGCAGGCACACACTCTCCA...CCACCAACTTCTTACACTTTTGGGACTCGAGCCAGAGTTTAAAAGGGAACCAAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 8 transcripts:
ENSMUST00000004985.11
ENSMUST00000140973.9
ENSMUST00000156029.8
ENSMUST00000232997.2
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233709.2
3UTR CAA 90 bp TGTCTTACATGCCAAGGTGTCTGCACTGTTTATGCAGCACAAGGGTaGTCTGCATGCTGGACGCACTTTATTATGTTATATGAATTAGGC +
Preference number: 2 (lower is better)
Translates to: CLTCQGVCTVYAAQG*SACWTHFIMLYELG
Trigger: GCCTAATTCATATAACATAATAAAGTGCGTCCAGCATGCAGACAACCCTTGTGCTGCATAAACAGTGCAGACACCTTGGCATGTAAGACA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000004985.11
3UTR-3UTR TCA 90 bp GTTGGTTCCCTTTTAAACTCTGGCTCGAGTCCCAAAAGTGTAAGAAGTTGGTGGAAAAGATCAATTTGGTaGTGTTGCTGTCAGTTTGGC +
Preference number: 2 (lower is better)
Translates to: VGSLLNSGSSPKSVRSWWKRSIW*CCCQFG
Trigger: GCCAAACTGACAGCAACATCACCAAATTGATCTTTT...CCACCAACTTCTTACACTTTTGGGACTCGAGCCAGAGTTTAAAAGGGAACCAAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 8 transcripts:
ENSMUST00000004985.11
ENSMUST00000140973.9
ENSMUST00000156029.8
ENSMUST00000232997.2
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233709.2
3UTR-3UTR TCA 90 bp GTTGGTTCCCTTTTAAACTCTGGCTCGAGTCCCAAAAGTGTAAGAAGTTGGTGGTGGTGCTTAAAGAAGTaGAAAGAAATGTCAAGAGCA +
Preference number: 2 (lower is better)
Translates to: VGSLLNSGSSPKSVRSWWWCLKK*KEMSRA
Trigger: TGCTCTTGACATTTCTTTTCACTTCTTTAAGCACCA...CCACCAACTTCTTACACTTTTGGGACTCGAGCCAGAGTTTAAAAGGGAACCAAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 8 transcripts:
ENSMUST00000004985.11
ENSMUST00000140973.9
ENSMUST00000156029.8
ENSMUST00000232997.2
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233709.2
3UTR-3UTR TCA 90 bp CCGCACACCACAGCCCATAGAACATTTATTTCTCGGAGAGAAAATAAGACATCAAAAAGATCAATTTGGTaGTGTTGCTGTCAGTTTGGC +
Preference number: 2 (lower is better)
Translates to: PHTTAHRTFISRRENKTSKRSIW*CCCQFG
Trigger: GCCAAACTGACAGCAACATCACCAAATTGATCTTTT...TGATGTCTTATTTTCTCTCCGAGAAATAAATGTTCTATGGGCTGTGGTGTGCGG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000004985.11
3UTR GCA 72 bp GCAATCCCAGAGGGCGGGTGCTGGAGGGCAGTGCCATaGCGCACGCCACCCGCCACCCGCCACCCGCCACCC +
Preference number: 3 (lower is better)
Translates to: AIPEGGCWRAVP*RTPPATRHPPP
Trigger: GGGTGGCGGGTGGCGGGTGGCGGGTGGCGTGCGGCATGGCACTGCCCTCCAGCACCCGCCCTCTGGGATTGC
76% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000004985.11
ENSMUST00000140973.9
ENSMUST00000156029.8
ENSMUST00000232997.2
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233709.2
3UTR CCA 72 bp CGATGTTCTCTGCCTGCCGCCGGGCGTGCCGCAGGATaGCCCCTCCCAGGTCCCGGAGGCGGACAGCTGCTC +
Preference number: 3 (lower is better)
Translates to: RCSLPAAGRAAG*PLPGPGGGQLL
Trigger: GAGCAGCTGTCCGCCTCCGGGACCTGGGAGGGGCCATCCTGCGGCACGCCCGGCGGCAGGCAGAGAACATCG
74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000232705.2
ENSMUST00000232997.2
3UTR-3UTR CAA 90 bp GCCACCCGCCGCCCGTGCCGCGGTGATCATGCTGATGCAGTGAGGCTTATGGCTGGGATGGGGACACCGTaGTGCAGGAGGCCCTCCCGG +
Preference number: 3 (lower is better)
Translates to: ATRRPCRGDHADAVRLMAGMGTP*CRRPSR
Trigger: CCGGGAGGGCCTCCTGCACAACGGTGTCCCCATCCC...AGCCATAAGCCTCACTGCATCAGCATGATCACCGCGGCACGGGCGGCGGGTGGC
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000140973.9
ENSMUST00000233709.2
3UTR-3UTR CAA 90 bp CGTCCTCTGGGCCATGGTCCTCGCCATTCTCAAGGGTCCCATCGGGACCCCTCTGGGATGGGGACACCGTaGTGCAGGAGGCCCTCCCGG +
Preference number: 3 (lower is better)
Translates to: RPLGHGPRHSQGSHRDPSGMGTP*CRRPSR
Trigger: CCGGGAGGGCCTCCTGCACAACGGTGTCCCCATCCC...AGAGGGGTCCCGATGGGACCCTTGAGAATGGCGAGGACCATGGCCCAGAGGACG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000232705.2
3UTR TCA 72 bp CCCGCCGCCCGTGCCGCGGTGATCATGCTGATGCAGTaGGGCTTATGGCTGCTGCAGGAGGGGAGGGCAGCA +
Preference number: 3 (lower is better)
Translates to: PAARAAVIMLMQ*GLWLLQEGRAA
Trigger: TGCTGCCCTCCCCTCCTGCAGCAGCCATAAGCCTCACTGCATCAGCATGATCACCGCGGCACGGGCGGCGGG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000004985.11
ENSMUST00000140973.9
ENSMUST00000156029.8
ENSMUST00000232997.2
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233709.2
3UTR-3UTR CAA 90 bp GGCCTGCCATTAGAAAGAAGCTGCCGGCCATACACGTGGCAGGGGCAGCAGAGGGGGATGGGGACACCGTaGTGCAGGAGGCCCTCCCGG +
Preference number: 3 (lower is better)
Translates to: GLPLERSCRPYTWQGQQRGMGTP*CRRPSR
Trigger: CCGGGAGGGCCTCCTGCACAACGGTGTCCCCATCCC...CCTCTGCTGCCCCTGCCACGTGTATGGCCGGCAGCTTCTTTCTAATGGCAGGCC
67% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000140973.9
ENSMUST00000232705.2
ENSMUST00000233709.2
3UTR CCA 72 bp TGCGCAGCATGCGGACACGACGGGTGCGGGCCCCGCTaGACCGCATGGTGCTCACCAGATCCAGTTTCTCCA +
Preference number: 3 (lower is better)
Translates to: CAACGHDGCGPR*TAWCSPDPVSP
Trigger: TGGAGAAACTGGATCTGGTGAGCACCATGCGGTCCAGCGGGGCCCGCACCCGTCGTGTCCGCATGCTGCGCA
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000232705.2
ENSMUST00000232997.2
3UTR CCA 72 bp TGCGGACACGACGGGTGCGGGCCCCGCTGGACCGCATaGTGCTCACCAGATCCAGTTTCTCCAGCAGTTCCT +
Preference number: 3 (lower is better)
Translates to: CGHDGCGPRWTA*CSPDPVSPAVP
Trigger: AGGAACTGCTGGAGAAACTGGATCTGGTGAGCACCATGCGGTCCAGCGGGGCCCGCACCCGTCGTGTCCGCA
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000232705.2
ENSMUST00000232997.2
3UTR-3UTR CAA 90 bp GGGCGGTGTGGGGGAAGGGAAGCTCTGAGGGTTCCCGAGGGACCCTGGCACATCTCGGGTGGGAGTTTTTaGGCACACAGCAGCCCTCCA +
Preference number: 3 (lower is better)
Translates to: GRCGGREALRVPEGPWHISGGSF*AHSSPP
Trigger: TGGAGGGCTGCTGTGTGCCAAAAAACTCCCACCCGA...GATGTGCCAGGGTCCCTCGGGAACCCTCAGAGCTTCCCTTCCCCCACACCGCCC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 10 transcripts:
ENSMUST00000004985.11
ENSMUST00000140973.9
ENSMUST00000156029.8
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
3UTR TCA 72 bp GTGGCGGTGGCTGTGCTAGCTTTTGCCGAAGGGCATTaGTCTCCCTGCGCAGCATGCGGACACGACGGGTGC +
Preference number: 3 (lower is better)
Translates to: VAVAVLAFAEGH*SPCAACGHDGC
Trigger: GCACCCGTCGTGTCCGCATGCTGCGCAGGGAGATCAATGCCCTTCGGCAAAAGCTAGCACAGCCACCGCCAC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000232705.2
ENSMUST00000232997.2
3UTR-3UTR CAA 90 bp AGGGTCACAGAGTCCACAGCTGACCAGCTACCTGGGGATAGGGGGACGTGTCGGGCGTGGCTGTGCTGTTaGCTGGACAGAACCTGGCCC +
Preference number: 3 (lower is better)
Translates to: RVTESTADQLPGDRGTCRAWLCC*LDRTWP
Trigger: GGGCCAGGTTCTGTCCAGCAAACAGCACAGCCACGC...CCGACACGTCCCCCTATCCCCAGGTAGCTGGTCAGCTGTGGACTCTGTGACCCT
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 8 transcripts:
ENSMUST00000004985.11
ENSMUST00000140973.9
ENSMUST00000156029.8
ENSMUST00000232997.2
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233709.2
3UTR-3UTR CAA 90 bp TGGGGGAAGGGAAGCTCTGAGGGTTCCCGAGGGACCCTGGCACATCTCTGGGATCCCTCCCGGGGCATCTaGGGATCGATGATCAAGGCA +
Preference number: 3 (lower is better)
Translates to: WGKGSSEGSRGTLAHLWDPSRGI*GSMIKA
Trigger: TGCCTTGATCATCGATCCCAAGATGCCCCGGGAGGG...ATCCCAGAGATGTGCCAGGGTCCCTCGGGAACCCTCAGAGCTTCCCTTCCCCCA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000140973.9
ENSMUST00000233709.2
3UTR-3UTR CAA 90 bp GAGGGTCCTTACAGGTGGGGTAGCTTCTACCTGGGACTCAAGCGCCTGGCAGACCTAGGCCCTCTTGCCTaGTGGGCCAGGTCTATCTCC +
Preference number: 3 (lower is better)
Translates to: EGPYRWGSFYLGLKRLADLGPLA*WARSIS
Trigger: GGAGATAGACCTGGCCCACAAGGCAAGAGGGCCTAG...GTCTGCCAGGCGCTTGAGTCCCAGGTAGAAGCTACCCCACCTGTAAGGACCCTC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 10 transcripts:
ENSMUST00000004985.11
ENSMUST00000140973.9
ENSMUST00000156029.8
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
3UTR TCA 72 bp TTTCAGGGTTGGGGGATCTGGAGGGGATTCCTGTTCTaGCAAGGAAGGCGCAGGCCCGGTAGGCTCCAGGGT +
Preference number: 3 (lower is better)
Translates to: FQGWGIWRGFLF*QGRRRPGRLQG
Trigger: ACCCTGGAGCCTACCGGGCCTGCGCCTTCCTTGTCAGAACAGGAATCCCCTCCAGATCCCCCAACCCTGAAA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000232705.2
ENSMUST00000232997.2
3UTR GCA 72 bp ACCCAGTCCAGTCAGGGCCTGCCATTAGAAAGAAGCTaGCGGCCATACACGTGGCAGGGGCAGCAGAGGTTC +
Preference number: 3 (lower is better)
Translates to: TQSSQGLPLERS*RPYTWQGQQRF
Trigger: GAACCTCTGCTGCCCCTGCCACGTGTATGGCCGGCAGCTTCTTTCTAATGGCAGGCCCTGACTGGACTGGGT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 11 transcripts:
ENSMUST00000004985.11
ENSMUST00000140587.9
ENSMUST00000140973.9
ENSMUST00000156029.8
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
3UTR CCA 72 bp AGTGTCCTCCACACCCAGGGGCAGGACTTTGTCCCTTaGAAGCCACTGCCTGCCAGCTTCAAACGCCAGTCC +
Preference number: 3 (lower is better)
Translates to: SVLHTQGQDFVP*KPLPASFKRQS
Trigger: GGACTGGCGTTTGAAGCTGGCAGGCAGTGGCTTCCAAGGGACAAAGTCCTGCCCCTGGGTGTGGAGGACACT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000232997.2
3UTR-3UTR CAA 90 bp AACCTTGCCTGCCCTGAGGTATGGTTAGGTGGGAGAGACATGGAGAGAGCCGGCCTAGGCCCTCTTGCCTaGTGGGCCAGGTCTATCTCC +
Preference number: 3 (lower is better)
Translates to: NLACPEVWLGGRDMERAGLGPLA*WARSIS
Trigger: GGAGATAGACCTGGCCCACAAGGCAAGAGGGCCTAG...GCCGGCTCTCTCCATGTCTCTCCCACCTAACCATACCTCAGGGCAGGCAAGGTT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 10 transcripts:
ENSMUST00000004985.11
ENSMUST00000140973.9
ENSMUST00000156029.8
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
3UTR-3UTR CAA 90 bp AGGGTCCTTACAGGTGGGGTAGCTTCTACCTGGGACTCAAGCGCCTGGCAGACACTAGGCCCTCTTGCCTaGTGGGCCAGGTCTATCTCC +
Preference number: 3 (lower is better)
Translates to: RVLTGGVASTWDSSAWQTLGPLA*WARSIS
Trigger: GGAGATAGACCTGGCCCACAAGGCAAGAGGGCCTAG...TGTCTGCCAGGCGCTTGAGTCCCAGGTAGAAGCTACCCCACCTGTAAGGACCCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 10 transcripts:
ENSMUST00000004985.11
ENSMUST00000140973.9
ENSMUST00000156029.8
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
3UTR-3UTR CAA 90 bp GCCACCCGCCGCCCGTGCCGCGGTGATCATGCTGATGCAGTGAGGCTTATGGCTAACCCGCCTGCGGCTTaGGTGCTTAAAGAAGTGAAA +
Preference number: 3 (lower is better)
Translates to: ATRRPCRGDHADAVRLMANPPAA*VLKEVK
Trigger: TTTCACTTCTTTAAGCACCAAAGCCGCAGGCGGGTT...AGCCATAAGCCTCACTGCATCAGCATGATCACCGCGGCACGGGCGGCGGGTGGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000004985.11
ENSMUST00000140973.9
ENSMUST00000156029.8
ENSMUST00000232997.2
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233709.2
3UTR-3UTR CAA 90 bp GGCCTGCCATTAGAAAGAAGCTGCCGGCCATACACGTGGCAGGGGCAGCAGAGGAAGTCAACATGGCAATaGGCGGTCTGCAAACCCGCC +
Preference number: 3 (lower is better)
Translates to: GLPLERSCRPYTWQGQQRKSTWQ*AVCKPA
Trigger: GGCGGGTTTGCAGACCGCCAATTGCCATGTTGACTT...CCTCTGCTGCCCCTGCCACGTGTATGGCCGGCAGCTTCTTTCTAATGGCAGGCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000004985.11
ENSMUST00000140973.9
ENSMUST00000156029.8
ENSMUST00000232997.2
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233709.2
3UTR-3UTR CAA 90 bp AGGGTCACAGAGTCCACAGCTGACCAGCTACCTGGGGATAGGGGGACGTGTCGGTTCCGGATGCTGGTCTaGCGGCCTTCTAGCATCTTG +
Preference number: 3 (lower is better)
Translates to: RVTESTADQLPGDRGTCRFRMLV*RPSSIL
Trigger: CAAGATGCTAGAAGGCCGCAAGACCAGCATCCGGAA...CCGACACGTCCCCCTATCCCCAGGTAGCTGGTCAGCTGTGGACTCTGTGACCCT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000140973.9
ENSMUST00000156029.8
ENSMUST00000232997.2
ENSMUST00000233709.2
3UTR-3UTR CAA 90 bp TGGGGGAAGGGAAGCTCTGAGGGTTCCCGAGGGACCCTGGCACATCTCTGGGATTTCCGGATGCTGGTCTaGCGGCCTTCTAGCATCTTG +
Preference number: 3 (lower is better)
Translates to: WGKGSSEGSRGTLAHLWDFRMLV*RPSSIL
Trigger: CAAGATGCTAGAAGGCCGCAAGACCAGCATCCGGAA...ATCCCAGAGATGTGCCAGGGTCCCTCGGGAACCCTCAGAGCTTCCCTTCCCCCA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 6 transcripts:
ENSMUST00000140973.9
ENSMUST00000156029.8
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233701.2
ENSMUST00000233709.2
3UTR-3UTR CAA 90 bp TGGGGGAAGGGAAGCTCTGAGGGTTCCCGAGGGACCCTGGCACATCTCTGGGATTTTTGCCGAAGGGCATaGATCTCCCTGCGCAGCATG +
Preference number: 3 (lower is better)
Translates to: WGKGSSEGSRGTLAHLWDFCRRA*ISLRSM
Trigger: CATGCTGCGCAGGGAGATCAATGCCCTTCGGCAAAA...ATCCCAGAGATGTGCCAGGGTCCCTCGGGAACCCTCAGAGCTTCCCTTCCCCCA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000232705.2
ENSMUST00000232997.2
3UTR-3UTR CAA 90 bp CCCTTCACTGTCACTACAGCTCCGGCTCCTTGGCCGCTTCCGGGAATAGTGTTCGCTGGCAGCTCCCCGTaGGGCACAGTCTTGTTCAGT +
Preference number: 3 (lower is better)
Translates to: PFTVTTAPAPWPLPGIVFAGSSP*GTVLFS
Trigger: ACTGAACAAGACTGTGCCCAACGGGGAGCTGCCAGC...GAACACTATTCCCGGAAGCGGCCAAGGAGCCGGAGCTGTAGTGACAGTGAAGGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000232705.2
ENSMUST00000232997.2
3UTR GCA 72 bp CAGAGGAACACTGAGGCCCACACTCAAAGTGTGCTGTaGTTGACTTCTCCCTGGGCCCAGGCTGTAGCCCTC +
Preference number: 3 (lower is better)
Translates to: QRNTEAHTQSVL*LTSPWAQAVAL
Trigger: GAGGGCTACAGCCTGGGCCCAGGGAGAAGTCAAGCACAGCACACTTTGAGTGTGGGCCTCAGTGTTCCTCTG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000156029.8
3UTR CCA 72 bp GCAGCCCTCCAGGGGAACCACATGATTGGTCAATATTaGGTCTTGCCCTCGGAGACCCAGTCCAGTCAGGGC +
Preference number: 3 (lower is better)
Translates to: AALQGNHMIGQY*VLPSETQSSQG
Trigger: GCCCTGACTGGACTGGGTCTCCGAGGGCAAGACCCAATATTGACCAATCATGTGGTTCCCCTGGAGGGCTGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 10 transcripts:
ENSMUST00000004985.11
ENSMUST00000140973.9
ENSMUST00000156029.8
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
3UTR CCA 72 bp GTATGGTTAGGTGGGAGAGACATGGAGAGAGCCGGCTaGCCCCAGAAAAGCAGCCTAGGCCCTCTTGCCTTG +
Preference number: 3 (lower is better)
Translates to: VWLGGRDMERAG*PQKSSLGPLAL
Trigger: CAAGGCAAGAGGGCCTAGGCTGCTTTTCTGGGGCCAGCCGGCTCTCTCCATGTCTCTCCCACCTAACCATAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 10 transcripts:
ENSMUST00000004985.11
ENSMUST00000140973.9
ENSMUST00000156029.8
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
3UTR CCA 72 bp GGGGGAAGGGAAGCTCTGAGGGTTCCCGAGGGACCCTaGCACATCTCTGGGATCAATGTCAGAACCTTGCCT +
Preference number: 3 (lower is better)
Translates to: GGREALRVPEGP*HISGINVRTLP
Trigger: AGGCAAGGTTCTGACATTGATCCCAGAGATGTGCCAGGGTCCCTCGGGAACCCTCAGAGCTTCCCTTCCCCC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 10 transcripts:
ENSMUST00000004985.11
ENSMUST00000140973.9
ENSMUST00000156029.8
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
3UTR CCA 72 bp ACACCACGCCCTGTCCCGCGTGGCTGTGCTGTTTGCTaGACAGAACCTGGCCCTCTTGGTGAGTTTTGTTGG +
Preference number: 3 (lower is better)
Translates to: TPRPVPRGCAVC*TEPGPLGEFCW
Trigger: CCAACAAAACTCACCAAGAGGGCCAGGTTCTGTCCAGCAAACAGCACAGCCACGCGGGACAGGGCGTGGTGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000004985.11
ENSMUST00000140973.9
ENSMUST00000156029.8
ENSMUST00000232997.2
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233709.2
3UTR CCA 72 bp ATCCTCTGTGCTGGCTGGAGAAGCAGGATCGTCCTCTaGGCCATGGTCCTCGCCATTCTCAAGGGTCCCATC +
Preference number: 3 (lower is better)
Translates to: ILCAGWRSRIVL*AMVLAILKGPI
Trigger: GATGGGACCCTTGAGAATGGCGAGGACCATGGCCCAGAGGACGATCCTGCTTCTCCAGCCAGCACAGAGGAT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000232705.2
ENSMUST00000232997.2
3UTR-3UTR CAA 90 bp GGGGGAAGGGAAGCTCTGAGGGTTCCCGAGGGACCCTGGCACATCTCTGGGATCCATGATTGGTCAATATaGGGTCTTGCCCTCGGAGAC +
Preference number: 3 (lower is better)
Translates to: GGREALRVPEGPWHISGIHDWSI*GLALGD
Trigger: GTCTCCGAGGGCAAGACCCAATATTGACCAATCATG...GATCCCAGAGATGTGCCAGGGTCCCTCGGGAACCCTCAGAGCTTCCCTTCCCCC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 10 transcripts:
ENSMUST00000004985.11
ENSMUST00000140973.9
ENSMUST00000156029.8
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
3UTR-3UTR CAA 90 bp AAGGGAAGCTCTGAGGGTTCCCGAGGGACCCTGGCACATCTCTGGGATCAATGTCTAGGCCCTCTTGCCTaGTGGGCCAGGTCTATCTCC +
Preference number: 3 (lower is better)
Translates to: KGSSEGSRGTLAHLWDQCLGPLA*WARSIS
Trigger: GGAGATAGACCTGGCCCACAAGGCAAGAGGGCCTAG...ACATTGATCCCAGAGATGTGCCAGGGTCCCTCGGGAACCCTCAGAGCTTCCCTT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 10 transcripts:
ENSMUST00000004985.11
ENSMUST00000140973.9
ENSMUST00000156029.8
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
3UTR-3UTR CAA 90 bp GAGGGTCCTTACAGGTGGGGTAGCTTCTACCTGGGACTCAAGCGCCTGGCAGACCCTCTGAGAGCTGCGTaGGCTTGTCAGTCAGCTTTC +
Preference number: 3 (lower is better)
Translates to: EGPYRWGSFYLGLKRLADPLRAA*ACQSAF
Trigger: GAAAGCTGACTGACAAGCCAACGCAGCTCTCAGAGG...GTCTGCCAGGCGCTTGAGTCCCAGGTAGAAGCTACCCCACCTGTAAGGACCCTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000004985.11
ENSMUST00000140973.9
ENSMUST00000156029.8
ENSMUST00000232997.2
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233709.2
3UTR-3UTR CAA 90 bp CTGACCAGCTACCTGGGGATAGGGGGACGTGTCGGCTCCTTGATTAGGCTGTGCAAGTCAACATGGCAATaGGCGGTCTGCAAACCCGCC +
Preference number: 3 (lower is better)
Translates to: LTSYLGIGGRVGSLIRLCKSTWQ*AVCKPA
Trigger: GGCGGGTTTGCAGACCGCCAATTGCCATGTTGACTT...GCACAGCCTAATCAAGGAGCCGACACGTCCCCCTATCCCCAGGTAGCTGGTCAG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 8 transcripts:
ENSMUST00000004985.11
ENSMUST00000140973.9
ENSMUST00000156029.8
ENSMUST00000232997.2
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233709.2
3UTR-3UTR CAA 90 bp CACCCGCCACCCGCCACCCGCCGCCCGTGCCGCGGTGATCATGCTGATGCAGTGGTAAGAAGTTGGTGGTaGGTTGGTTGTATTTCTTTA +
Preference number: 3 (lower is better)
Translates to: HPPPATRRPCRGDHADAVVRSWW*VGCISL
Trigger: TAAAGAAATACAACCAACCAACCACCAACTTCTTAC...CACTGCATCAGCATGATCACCGCGGCACGGGCGGCGGGTGGCGGGTGGCGGGTG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000004985.11
ENSMUST00000140973.9
ENSMUST00000156029.8
ENSMUST00000232997.2
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233709.2
3UTR-3UTR CAA 90 bp AGGGTCACAGAGTCCACAGCTGACCAGCTACCTGGGGATAGGGGGACGTGTCGGATCAATGTCAGAACCTaGCCTGCCCTGAGGTATGGT +
Preference number: 3 (lower is better)
Translates to: RVTESTADQLPGDRGTCRINVRT*PALRYG
Trigger: ACCATACCTCAGGGCAGGCAAGGTTCTGACATTGAT...CCGACACGTCCCCCTATCCCCAGGTAGCTGGTCAGCTGTGGACTCTGTGACCCT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 8 transcripts:
ENSMUST00000004985.11
ENSMUST00000140973.9
ENSMUST00000156029.8
ENSMUST00000232997.2
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233709.2
3UTR-3UTR CAA 90 bp GTCTTGCCCTCGGAGACCCAGTCCAGTCAGGGCCTGCCATTAGAAAGAAGCTGCTTCCGGATGCTGGTCTaGCGGCCTTCTAGCATCTTG +
Preference number: 3 (lower is better)
Translates to: VLPSETQSSQGLPLERSCFRMLV*RPSSIL
Trigger: CAAGATGCTAGAAGGCCGCAAGACCAGCATCCGGAA...GCAGCTTCTTTCTAATGGCAGGCCCTGACTGGACTGGGTCTCCGAGGGCAAGAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000140973.9
ENSMUST00000156029.8
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233701.2
ENSMUST00000233709.2
3UTR TCA 72 bp CTGGGCCCAGGCTGTAGCCCTCATCCTGTAGCTTTCTaGGCAAAGTCTCCTGAAAAGCCCCCTAAGGAGGCC +
Preference number: 3 (lower is better)
Translates to: LGPGCSPHPVAF*AKSPEKPPKEA
Trigger: GGCCTCCTTAGGGGGCTTTTCAGGAGACTTTGCTCAGAAAGCTACAGGATGAGGGCTACAGCCTGGGCCCAG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000156029.8
3UTR GCA 72 bp TCCTTGGCCGCTTCCGGGAATAGTGTTCATCCTCTGTaGTGGCTGGAGAAGCAGGATCGTCCTCTGGGCCAT +
Preference number: 3 (lower is better)
Translates to: SLAASGNSVHPL*WLEKQDRPLGH
Trigger: ATGGCCCAGAGGACGATCCTGCTTCTCCAGCCAGCACAGAGGATGAACACTATTCCCGGAAGCGGCCAAGGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000232705.2
ENSMUST00000232997.2
3UTR CCA 72 bp AGCTCTGAGGGTTCCCGAGGGACCCTGGCACATCTCTaGGATCAATGTCAGAACCTTGCCTGCCCTGAGGTA +
Preference number: 3 (lower is better)
Translates to: SSEGSRGTLAHL*DQCQNLACPEV
Trigger: TACCTCAGGGCAGGCAAGGTTCTGACATTGATCCCAGAGATGTGCCAGGGTCCCTCGGGAACCCTCAGAGCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 10 transcripts:
ENSMUST00000004985.11
ENSMUST00000140973.9
ENSMUST00000156029.8
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
3UTR CCA 72 bp GCTGTAACCTCAGCACGGGAAGAGAAGATGGCTGGCTaGCCAGACAGGAGCTCCATCAGTGAGCTCTGCTTC +
Preference number: 3 (lower is better)
Translates to: AVTSAREEKMAG*PDRSSISELCF
Trigger: GAAGCAGAGCTCACTGATGGAGCTCCTGTCTGGCCAGCCAGCCATCTTCTCTTCCCGTGCTGAGGTTACAGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000004985.11
3UTR CCA 72 bp ATGTGCAGAAGGATCCTGTTGCAGCGTCGTTCTTCCTaGCCAGTCGAGCGTGCGCAAGAACTGCCCAGCTCA +
Preference number: 3 (lower is better)
Translates to: MCRRILLQRRSS*PVERAQELPSS
Trigger: TGAGCTGGGCAGTTCTTGCGCACGCTCGACTGGCCAGGAAGAACGACGCTGCAACAGGATCCTTCTGCACAT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000004985.11
3UTR CCA 72 bp AGTGTCCTCCACACCCAGGGGCAGGACTTTGTCCCTTaGAAGCCACTGCCTAGAATGCAAGCAGAGCTGAGG +
Preference number: 3 (lower is better)
Translates to: SVLHTQGQDFVP*KPLPRMQAELR
Trigger: CCTCAGCTCTGCTTGCATTCTAGGCAGTGGCTTCCAAGGGACAAAGTCCTGCCCCTGGGTGTGGAGGACACT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000156029.8
3UTR CCA 72 bp TTGGCCGCTTCCGGGAATAGTGTTCATCCTCTGTGCTaGCTGGAGAAGCAGGATCGTCCTCTGGGCCATGGT +
Preference number: 3 (lower is better)
Translates to: LAASGNSVHPLC*LEKQDRPLGHG
Trigger: ACCATGGCCCAGAGGACGATCCTGCTTCTCCAGCCAGCACAGAGGATGAACACTATTCCCGGAAGCGGCCAA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000232705.2
ENSMUST00000232997.2
3UTR CCA 72 bp CCTCTCCCCTTCACTGTCACTACAGCTCCGGCTCCTTaGCCGCTTCCGGGAATAGTGTTCATCCTCTGTGCT +
Preference number: 3 (lower is better)
Translates to: PLPFTVTTAPAP*PLPGIVFILCA
Trigger: AGCACAGAGGATGAACACTATTCCCGGAAGCGGCCAAGGAGCCGGAGCTGTAGTGACAGTGAAGGGGAGAGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000232705.2
ENSMUST00000232997.2
3UTR-3UTR CAA 90 bp AGTCAGGGCCTGCCATTAGAAAGAAGCTGCCGGCCATACACGTGGCAGGGGCAGATCAATGTCAGAACCTaGCCTGCCCTGAGGTATGGT +
Preference number: 3 (lower is better)
Translates to: SQGLPLERSCRPYTWQGQINVRT*PALRYG
Trigger: ACCATACCTCAGGGCAGGCAAGGTTCTGACATTGAT...CTGCCCCTGCCACGTGTATGGCCGGCAGCTTCTTTCTAATGGCAGGCCCTGACT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 10 transcripts:
ENSMUST00000004985.11
ENSMUST00000140973.9
ENSMUST00000156029.8
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
3UTR-3UTR CAA 90 bp GGAAGGGAAGCTCTGAGGGTTCCCGAGGGACCCTGGCACATCTCTGGGATCAATGAGAGCTGCGTTGGCTaGTCAGTCAGCTTTCCTCAT +
Preference number: 3 (lower is better)
Translates to: GREALRVPEGPWHISGINESCVG*SVSFPH
Trigger: ATGAGGAAAGCTGACTGACAAGCCAACGCAGCTCTC...ATTGATCCCAGAGATGTGCCAGGGTCCCTCGGGAACCCTCAGAGCTTCCCTTCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000004985.11
ENSMUST00000140973.9
ENSMUST00000156029.8
ENSMUST00000232997.2
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233709.2
3UTR-3UTR CAA 90 bp TGCCGCGGTGATCATGCTGATGCAGTGAGGCTTATGGCTGCTGCAGGAGGGGAGAACCCGCCTGCGGCTTaGGTGCTTAAAGAAGTGAAA +
Preference number: 3 (lower is better)
Translates to: CRGDHADAVRLMAAAGGENPPAA*VLKEVK
Trigger: TTTCACTTCTTTAAGCACCAAAGCCGCAGGCGGGTT...CTCCCCTCCTGCAGCAGCCATAAGCCTCACTGCATCAGCATGATCACCGCGGCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000004985.11
ENSMUST00000140973.9
ENSMUST00000156029.8
ENSMUST00000232997.2
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233709.2
3UTR-3UTR CAA 90 bp GGGACCCTGGCACATCTCTGGGATCAATGTCAGAACCTTGCCTGCCCTGAGGTATTCCGGATGCTGGTCTaGCGGCCTTCTAGCATCTTG +
Preference number: 3 (lower is better)
Translates to: GTLAHLWDQCQNLACPEVFRMLV*RPSSIL
Trigger: CAAGATGCTAGAAGGCCGCAAGACCAGCATCCGGAA...TACCTCAGGGCAGGCAAGGTTCTGACATTGATCCCAGAGATGTGCCAGGGTCCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000140973.9
ENSMUST00000156029.8
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233701.2
ENSMUST00000233709.2
3UTR TCA 72 bp GCCACTGCCTGCCAGCTTCAAACGCCAGTCCTCCACTaGGACCCAAACTACATTCCGAGTCAGACCCGCTTT +
Preference number: 3 (lower is better)
Translates to: ATACQLQTPVLH*DPNYIPSQTRF
Trigger: AAAGCGGGTCTGACTCGGAATGTAGTTTGGGTCTCAGTGGAGGACTGGCGTTTGAAGCTGGCAGGCAGTGGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000232997.2
3UTR GCA 72 bp GCACACAGTGACTTGAACAATGACTTCTCTGCAACCTaGGGCAACCTGGCAGGACCCTCCTCAGGCCATCCA +
Preference number: 3 (lower is better)
Translates to: AHSDLNNDFSAT*GNLAGPSSGHP
Trigger: TGGATGGCCTGAGGAGGGTCCTGCCAGGTTGCCGCAGGTTGCAGAGAAGTCATTGTTCAAGTCACTGTGTGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000004985.11
3UTR CCA 72 bp TTGGCACACAGCAGCCCTCCAGGGGAACCACATGATTaGTCAATATTGGGTCTTGCCCTCGGAGACCCAGTC +
Preference number: 3 (lower is better)
Translates to: LAHSSPPGEPHD*SILGLALGDPV
Trigger: GACTGGGTCTCCGAGGGCAAGACCCAATATTGACCAATCATGTGGTTCCCCTGGAGGGCTGCTGTGTGCCAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 10 transcripts:
ENSMUST00000004985.11
ENSMUST00000140973.9
ENSMUST00000156029.8
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
3UTR-3UTR CAA 90 bp GTGGGCCAGGTCTATCTCCCTGGCTGGCTAAGACTCTCAGCTGTTTCTACTTCTTCGGGTGGGAGTTTTTaGGCACACAGCAGCCCTCCA +
Preference number: 3 (lower is better)
Translates to: VGQVYLPGWLRLSAVSTSSGGSF*AHSSPP
Trigger: TGGAGGGCTGCTGTGTGCCAAAAAACTCCCACCCGA...AGAAGTAGAAACAGCTGAGAGTCTTAGCCAGCCAGGGAGATAGACCTGGCCCAC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 10 transcripts:
ENSMUST00000004985.11
ENSMUST00000140973.9
ENSMUST00000156029.8
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
3UTR-3UTR CAA 90 bp CAACATGGCAATTGGCGGTCTGCAAACCCGCCTGCGGCTTTGGTGCTTAAAGAATCGGGTGGGAGTTTTTaGGCACACAGCAGCCCTCCA +
Preference number: 3 (lower is better)
Translates to: QHGNWRSANPPAALVLKESGGSF*AHSSPP
Trigger: TGGAGGGCTGCTGTGTGCCAAAAAACTCCCACCCGA...TTCTTTAAGCACCAAAGCCGCAGGCGGGTTTGCAGACCGCCAATTGCCATGTTG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 8 transcripts:
ENSMUST00000004985.11
ENSMUST00000140973.9
ENSMUST00000156029.8
ENSMUST00000232997.2
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233709.2
3UTR-3UTR CAA 90 bp CCTGGCAGACATCCATCTAATGTAGCAGCTGGCCAGGAAGGAAATGGGACATCACTAGGCCCTCTTGCCTaGTGGGCCAGGTCTATCTCC +
Preference number: 3 (lower is better)
Translates to: PGRHPSNVAAGQEGNGTSLGPLA*WARSIS
Trigger: GGAGATAGACCTGGCCCACAAGGCAAGAGGGCCTAG...TGATGTCCCATTTCCTTCCTGGCCAGCTGCTACATTAGATGGATGTCTGCCAGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 10 transcripts:
ENSMUST00000004985.11
ENSMUST00000140973.9
ENSMUST00000156029.8
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
3UTR-3UTR CAA 90 bp TGCCGCGGTGATCATGCTGATGCAGTGAGGCTTATGGCTGCTGCAGGAGGGGAGGGTTTTCCTTCCTTTTaGAGGGTAGGGATTGAGGAG +
Preference number: 3 (lower is better)
Translates to: CRGDHADAVRLMAAAGGEGFPSF*RVGIEE
Trigger: CTCCTCAATCCCTACCCTCAAAAAGGAAGGAAAACC...CTCCCCTCCTGCAGCAGCCATAAGCCTCACTGCATCAGCATGATCACCGCGGCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 8 transcripts:
ENSMUST00000004985.11
ENSMUST00000140973.9
ENSMUST00000156029.8
ENSMUST00000232997.2
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233709.2
3UTR-3UTR CAA 90 bp CTGACCAGCTACCTGGGGATAGGGGGACGTGTCGGCTCCTTGATTAGGCTGTGCGGTTTTCCTTCCTTTTaGAGGGTAGGGATTGAGGAG +
Preference number: 3 (lower is better)
Translates to: LTSYLGIGGRVGSLIRLCGFPSF*RVGIEE
Trigger: CTCCTCAATCCCTACCCTCAAAAAGGAAGGAAAACC...GCACAGCCTAATCAAGGAGCCGACACGTCCCCCTATCCCCAGGTAGCTGGTCAG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 8 transcripts:
ENSMUST00000004985.11
ENSMUST00000140973.9
ENSMUST00000156029.8
ENSMUST00000232997.2
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233709.2
3UTR-3UTR CAA 90 bp ATGATTGGTCAATATTGGGTCTTGCCCTCGGAGACCCAGTCCAGTCAGGGCCTGAAGTCAACATGGCAATaGGCGGTCTGCAAACCCGCC +
Preference number: 3 (lower is better)
Translates to: MIGQYWVLPSETQSSQGLKSTWQ*AVCKPA
Trigger: GGCGGGTTTGCAGACCGCCAATTGCCATGTTGACTT...CAGGCCCTGACTGGACTGGGTCTCCGAGGGCAAGACCCAATATTGACCAATCAT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000004985.11
ENSMUST00000140973.9
ENSMUST00000156029.8
ENSMUST00000232997.2
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233709.2
3UTR GCA 72 bp CAGGATGGCCCCTCCCAGGTCCCGGAGGCGGACAGCTaGTCGGTGGAAAATTGTGTCTTTAGCATTATACTT +
Preference number: 3 (lower is better)
Translates to: QDGPSQVPEADS*SVENCVFSIIL
Trigger: AAGTATAATGCTAAAGACACAATTTTCCACCGAGCAGCTGTCCGCCTCCGGGACCTGGGAGGGGCCATCCTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000232705.2
ENSMUST00000232997.2
3UTR CCA 72 bp TATCTTACAGTTATGTACACCACGCCCTGTCCCGCGTaGCTGTGCTGTTTGCTGGACAGAACCTGGCCCTCT +
Preference number: 3 (lower is better)
Translates to: YLTVMYTTPCPA*LCCLLDRTWPS
Trigger: AGAGGGCCAGGTTCTGTCCAGCAAACAGCACAGCCACGCGGGACAGGGCGTGGTGTACATAACTGTAAGATA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000004985.11
ENSMUST00000140973.9
ENSMUST00000156029.8
ENSMUST00000232997.2
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233709.2
3UTR CCA 72 bp CTTTCCAAACCTTTCTCCAGGCCAGGCCCCTCACAATaGCCTCAGGCGTCAGCAATGTCTTACATGCCAAGG +
Preference number: 3 (lower is better)
Translates to: LSKPFSRPGPSQ*PQASAMSYMPR
Trigger: CCTTGGCATGTAAGACATTGCTGACGCCTGAGGCCATTGTGAGGGGCCTGGCCTGGAGAAAGGTTTGGAAAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000004985.11
3UTR CCA 72 bp AGTGTCCTCCACACCCAGGGGCAGGACTTTGTCCCTTaGAAGCCACTGCCAGGTCCTCTTGTTGTCAAAGAA +
Preference number: 3 (lower is better)
Translates to: SVLHTQGQDFVP*KPLPGPLVVKE
Trigger: TTCTTTGACAACAAGAGGACCTGGCAGTGGCTTCCAAGGGACAAAGTCCTGCCCCTGGGTGTGGAGGACACT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000140973.9
ENSMUST00000232705.2
ENSMUST00000233709.2
3UTR-3UTR CAA 90 bp TACAGTTATGTACACCACGCCCTGTCCCGCGTGGCTGTGCTGTTTGCTGGACAGATCAATGTCAGAACCTaGCCTGCCCTGAGGTATGGT +
Preference number: 3 (lower is better)
Translates to: YSYVHHALSRVAVLFAGQINVRT*PALRYG
Trigger: ACCATACCTCAGGGCAGGCAAGGTTCTGACATTGAT...CTGTCCAGCAAACAGCACAGCCACGCGGGACAGGGCGTGGTGTACATAACTGTA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000004985.11
ENSMUST00000140973.9
ENSMUST00000156029.8
ENSMUST00000232997.2
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233709.2
3UTR-3UTR CAA 90 bp CAAGGTAGAAGTCAACATGGCAATTGGCGGTCTGCAAACCCGCCTGCGGCTTTGGAGAGCTGCGTTGGCTaGTCAGTCAGCTTTCCTCAT +
Preference number: 3 (lower is better)
Translates to: QGRSQHGNWRSANPPAALESCVG*SVSFPH
Trigger: ATGAGGAAAGCTGACTGACAAGCCAACGCAGCTCTC...CAAAGCCGCAGGCGGGTTTGCAGACCGCCAATTGCCATGTTGACTTCTACCTTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000004985.11
ENSMUST00000140973.9
ENSMUST00000156029.8
ENSMUST00000232997.2
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233709.2
3UTR-3UTR CAA 90 bp CAAGCGCCTGGCAGACATCCATCTAATGTAGCAGCTGGCCAGGAAGGAAATGGGCAGAACCTGGCCCTCTaGGTGAGTTTTGTTGGTTCC +
Preference number: 3 (lower is better)
Translates to: QAPGRHPSNVAAGQEGNGQNLAL*VSFVGS
Trigger: GGAACCAACAAAACTCACCAAGAGGGCCAGGTTCTG...CCCATTTCCTTCCTGGCCAGCTGCTACATTAGATGGATGTCTGCCAGGCGCTTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000004985.11
ENSMUST00000140973.9
ENSMUST00000156029.8
ENSMUST00000232997.2
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233709.2
3UTR-3UTR CAA 90 bp AAGGTAGAAGTCAACATGGCAATTGGCGGTCTGCAAACCCGCCTGCGGCTTTGGCAGAACCTGGCCCTCTaGGTGAGTTTTGTTGGTTCC +
Preference number: 3 (lower is better)
Translates to: KVEVNMAIGGLQTRLRLWQNLAL*VSFVGS
Trigger: GGAACCAACAAAACTCACCAAGAGGGCCAGGTTCTG...CCAAAGCCGCAGGCGGGTTTGCAGACCGCCAATTGCCATGTTGACTTCTACCTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000004985.11
ENSMUST00000140973.9
ENSMUST00000156029.8
ENSMUST00000232997.2
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233709.2
3UTR-3UTR CAA 90 bp AGCTCCGGCTCCTTGGCCGCTTCCGGGAATAGTGTTCATCCTCTGTGCTGGCTGAGTCTGTCAATGCCATaGTCACTAAGCAAGCATTGC +
Preference number: 3 (lower is better)
Translates to: SSGSLAASGNSVHPLCWLSLSMP*SLSKHC
Trigger: GCAATGCTTGCTTAGTGACAATGGCATTGACAGACT...CAGCCAGCACAGAGGATGAACACTATTCCCGGAAGCGGCCAAGGAGCCGGAGCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000232705.2
ENSMUST00000232997.2
3UTR TCA 72 bp AACCAAGAGCTGTGCCTTCTACCATATCAGAGGGCCTaGGTAGGGAGGACAGTAGCAAACTCCCACAGGCTC +
Preference number: 3 (lower is better)
Translates to: NQELCLLPYQRA*VGRTVANSHRL
Trigger: GAGCCTGTGGGAGTTTGCTACTGTCCTCCCTACTCAGGCCCTCTGATATGGTAGAAGGCACAGCTCTTGGTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000004985.11
3UTR CCA 72 bp CCCTCTTGCCTTGTGGGCCAGGTCTATCTCCCTGGCTaGCTAAGACTCTCAGCTGTTTCTACTTCTAAGTGG +
Preference number: 3 (lower is better)
Translates to: PSCLVGQVYLPG*LRLSAVSTSKW
Trigger: CCACTTAGAAGTAGAAACAGCTGAGAGTCTTAGCCAGCCAGGGAGATAGACCTGGCCCACAAGGCAAGAGGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 10 transcripts:
ENSMUST00000004985.11
ENSMUST00000140973.9
ENSMUST00000156029.8
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
3UTR CCA 72 bp CATCCTCCCAGGAGAATCGGTAAAAGTCTTCCAATCTaGGTGATTCGGGCAAGTGGGTGCCCCTCTCAGGAT +
Preference number: 3 (lower is better)
Translates to: HPPRRIGKSLPI*VIRASGCPSQD
Trigger: ATCCTGAGAGGGGCACCCACTTGCCCGAATCACCCAGATTGGAAGACTTTTACCGATTCTCCTGGGAGGATG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000232705.2
ENSMUST00000232997.2
3UTR-3UTR CAA 90 bp CAAGGTAGAAGTCAACATGGCAATTGGCGGTCTGCAAACCCGCCTGCGGCTTTGCATGATTGGTCAATATaGGGTCTTGCCCTCGGAGAC +
Preference number: 3 (lower is better)
Translates to: QGRSQHGNWRSANPPAALHDWSI*GLALGD
Trigger: GTCTCCGAGGGCAAGACCCAATATTGACCAATCATG...CAAAGCCGCAGGCGGGTTTGCAGACCGCCAATTGCCATGTTGACTTCTACCTTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000004985.11
ENSMUST00000140973.9
ENSMUST00000156029.8
ENSMUST00000232997.2
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233709.2
3UTR-3UTR CAA 90 bp CAATTTGGTGATGTTGCTGTCAGTTTGGCACAAGGGAGAGCAGAGAGCAATGAGCTAGGCCCTCTTGCCTaGTGGGCCAGGTCTATCTCC +
Preference number: 3 (lower is better)
Translates to: QFGDVAVSLAQGRAESNELGPLA*WARSIS
Trigger: GGAGATAGACCTGGCCCACAAGGCAAGAGGGCCTAG...CTCATTGCTCTCTGCTCTCCCTTGTGCCAAACTGACAGCAACATCACCAAATTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 10 transcripts:
ENSMUST00000004985.11
ENSMUST00000140973.9
ENSMUST00000156029.8
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
3UTR-3UTR CAA 90 bp GAGGGAAGGATTCCGAGACTGAAAAATAGAGACAGAGGAGATAGTGTTGGGGGACTAGGCCCTCTTGCCTaGTGGGCCAGGTCTATCTCC +
Preference number: 3 (lower is better)
Translates to: EGRIPRLKNRDRGDSVGGLGPLA*WARSIS
Trigger: GGAGATAGACCTGGCCCACAAGGCAAGAGGGCCTAG...TCCCCCAACACTATCTCCTCTGTCTCTATTTTTCAGTCTCGGAATCCTTCCCTC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 8 transcripts:
ENSMUST00000004985.11
ENSMUST00000140973.9
ENSMUST00000156029.8
ENSMUST00000232997.2
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233709.2
3UTR-3UTR CAA 90 bp GCGCCTGGCAGACATCCATCTAATGTAGCAGCTGGCCAGGAAGGAAATGGGACAATCAATGTCAGAACCTaGCCTGCCCTGAGGTATGGT +
Preference number: 3 (lower is better)
Translates to: APGRHPSNVAAGQEGNGTINVRT*PALRYG
Trigger: ACCATACCTCAGGGCAGGCAAGGTTCTGACATTGAT...TGTCCCATTTCCTTCCTGGCCAGCTGCTACATTAGATGGATGTCTGCCAGGCGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 10 transcripts:
ENSMUST00000004985.11
ENSMUST00000140973.9
ENSMUST00000156029.8
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
3UTR-3UTR CAA 90 bp AGCCCTCCAGGGGAACCACATGATTGGTCAATATTGGGTCTTGCCCTCGGAGACAACCCGCCTGCGGCTTaGGTGCTTAAAGAAGTGAAA +
Preference number: 3 (lower is better)
Translates to: SPPGEPHDWSILGLALGDNPPAA*VLKEVK
Trigger: TTTCACTTCTTTAAGCACCAAAGCCGCAGGCGGGTT...GTCTCCGAGGGCAAGACCCAATATTGACCAATCATGTGGTTCCCCTGGAGGGCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000004985.11
ENSMUST00000140973.9
ENSMUST00000156029.8
ENSMUST00000232997.2
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233709.2
3UTR-3UTR CAA 90 bp GTCAACATGGCAATTGGCGGTCTGCAAACCCGCCTGCGGCTTTGGTGCTTAAAGAACCCGCCTGCGGCTTaGGTGCTTAAAGAAGTGAAA +
Preference number: 3 (lower is better)
Translates to: VNMAIGGLQTRLRLWCLKNPPAA*VLKEVK
Trigger: TTTCACTTCTTTAAGCACCAAAGCCGCAGGCGGGTT...CTTTAAGCACCAAAGCCGCAGGCGGGTTTGCAGACCGCCAATTGCCATGTTGAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000004985.11
ENSMUST00000140973.9
ENSMUST00000156029.8
ENSMUST00000232997.2
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233709.2
3UTR-3UTR CAA 90 bp CTGGCACATCTCTGGGATCAATGTCAGAACCTTGCCTGCCCTGAGGTATGGTTACGGCCTTCTAGCATCTaGAGCTTGTCCACAGTGTCC +
Preference number: 3 (lower is better)
Translates to: LAHLWDQCQNLACPEVWLRPSSI*SLSTVS
Trigger: GGACACTGTGGACAAGCTCAAGATGCTAGAAGGCCG...TAACCATACCTCAGGGCAGGCAAGGTTCTGACATTGATCCCAGAGATGTGCCAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000140973.9
ENSMUST00000156029.8
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233701.2
ENSMUST00000233709.2
3UTR-3UTR CAA 90 bp CCTGGCAGACATCCATCTAATGTAGCAGCTGGCCAGGAAGGAAATGGGACATCACGGCCTTCTAGCATCTaGAGCTTGTCCACAGTGTCC +
Preference number: 3 (lower is better)
Translates to: PGRHPSNVAAGQEGNGTSRPSSI*SLSTVS
Trigger: GGACACTGTGGACAAGCTCAAGATGCTAGAAGGCCG...TGATGTCCCATTTCCTTCCTGGCCAGCTGCTACATTAGATGGATGTCTGCCAGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000140973.9
ENSMUST00000156029.8
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233701.2
ENSMUST00000233709.2
3UTR-3UTR CAA 90 bp TTTTGGCACACAGCAGCCCTCCAGGGGAACCACATGATTGGTCAATATTGGGTCCGGCCTTCTAGCATCTaGAGCTTGTCCACAGTGTCC +
Preference number: 3 (lower is better)
Translates to: FWHTAALQGNHMIGQYWVRPSSI*SLSTVS
Trigger: GGACACTGTGGACAAGCTCAAGATGCTAGAAGGCCG...GACCCAATATTGACCAATCATGTGGTTCCCCTGGAGGGCTGCTGTGTGCCAAAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000140973.9
ENSMUST00000156029.8
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233701.2
ENSMUST00000233709.2
3UTR-3UTR CAA 90 bp TTTTGGCACACAGCAGCCCTCCAGGGGAACCACATGATTGGTCAATATTGGGTCTTTTGCCGAAGGGCATaGATCTCCCTGCGCAGCATG +
Preference number: 3 (lower is better)
Translates to: FWHTAALQGNHMIGQYWVFCRRA*ISLRSM
Trigger: CATGCTGCGCAGGGAGATCAATGCCCTTCGGCAAAA...GACCCAATATTGACCAATCATGTGGTTCCCCTGGAGGGCTGCTGTGTGCCAAAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000232705.2
ENSMUST00000232997.2
3UTR TCA 72 bp CTCCCAGGAGAATCGGTAAAAGTCTTCCAATCTGGGTaGTTCGGGCAAGTGGGTGCCCCTCTCAGGATCATA +
Preference number: 3 (lower is better)
Translates to: LPGESVKVFQSG*FGQVGAPLRII
Trigger: TATGATCCTGAGAGGGGCACCCACTTGCCCGAATCACCCAGATTGGAAGACTTTTACCGATTCTCCTGGGAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000232705.2
ENSMUST00000232997.2
3UTR GCA 72 bp AAAAGTCTTCCAATCTGGGTGATTCGGGCAAGTGGGTaGCCCTCTCAGGATCATAGCCGATGTTCTCTGCCT +
Preference number: 3 (lower is better)
Translates to: KSLPIWVIRASG*PSQDHSRCSLP
Trigger: AGGCAGAGAACATCGGCTATGATCCTGAGAGGGGCACCCACTTGCCCGAATCACCCAGATTGGAAGACTTTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000232705.2
ENSMUST00000232997.2
3UTR-3UTR CAA 90 bp CATCTCTGGGATCAATGTCAGAACCTTGCCTGCCCTGAGGTATGGTTAGGTGGGCATGATTGGTCAATATaGGGTCTTGCCCTCGGAGAC +
Preference number: 3 (lower is better)
Translates to: HLWDQCQNLACPEVWLGGHDWSI*GLALGD
Trigger: GTCTCCGAGGGCAAGACCCAATATTGACCAATCATG...CCCACCTAACCATACCTCAGGGCAGGCAAGGTTCTGACATTGATCCCAGAGATG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 10 transcripts:
ENSMUST00000004985.11
ENSMUST00000140973.9
ENSMUST00000156029.8
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
3UTR-3UTR CAA 90 bp CTGACCAGCTACCTGGGGATAGGGGGACGTGTCGGCTCCTTGATTAGGCTGTGCCAAAAGTGTAAGAAGTaGGTGGTTGGTTGGTTGTAT +
Preference number: 3 (lower is better)
Translates to: LTSYLGIGGRVGSLIRLCQKCKK*VVGWLY
Trigger: ATACAACCAACCAACCACCAACTTCTTACACTTTTG...GCACAGCCTAATCAAGGAGCCGACACGTCCCCCTATCCCCAGGTAGCTGGTCAG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 8 transcripts:
ENSMUST00000004985.11
ENSMUST00000140973.9
ENSMUST00000156029.8
ENSMUST00000232997.2
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233709.2
3UTR-3UTR CAA 90 bp GAGGGTCCTTACAGGTGGGGTAGCTTCTACCTGGGACTCAAGCGCCTGGCAGACCAAAAGTGTAAGAAGTaGGTGGTTGGTTGGTTGTAT +
Preference number: 3 (lower is better)
Translates to: EGPYRWGSFYLGLKRLADQKCKK*VVGWLY
Trigger: ATACAACCAACCAACCACCAACTTCTTACACTTTTG...GTCTGCCAGGCGCTTGAGTCCCAGGTAGAAGCTACCCCACCTGTAAGGACCCTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 8 transcripts:
ENSMUST00000004985.11
ENSMUST00000140973.9
ENSMUST00000156029.8
ENSMUST00000232997.2
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233709.2
3UTR-3UTR CAA 90 bp CCTGGCAGACATCCATCTAATGTAGCAGCTGGCCAGGAAGGAAATGGGACATCACATGATTGGTCAATATaGGGTCTTGCCCTCGGAGAC +
Preference number: 3 (lower is better)
Translates to: PGRHPSNVAAGQEGNGTSHDWSI*GLALGD
Trigger: GTCTCCGAGGGCAAGACCCAATATTGACCAATCATG...TGATGTCCCATTTCCTTCCTGGCCAGCTGCTACATTAGATGGATGTCTGCCAGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 10 transcripts:
ENSMUST00000004985.11
ENSMUST00000140973.9
ENSMUST00000156029.8
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
3UTR-3UTR CAA 90 bp TACAGTTATGTACACCACGCCCTGTCCCGCGTGGCTGTGCTGTTTGCTGGACAGATCAATTTGGTGATGTaGCTGTCAGTTTGGCACAAG +
Preference number: 3 (lower is better)
Translates to: YSYVHHALSRVAVLFAGQINLVM*LSVWHK
Trigger: CTTGTGCCAAACTGACAGCAACATCACCAAATTGAT...CTGTCCAGCAAACAGCACAGCCACGCGGGACAGGGCGTGGTGTACATAACTGTA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000004985.11
ENSMUST00000140973.9
ENSMUST00000156029.8
ENSMUST00000232997.2
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233709.2
3UTR-3UTR CAA 90 bp GAGACAGAAAGGGAGAAGCCCCAAGATCTTGACACAGGTTTAGACAAGGGTCACGAGAGCTGCGTTGGCTaGTCAGTCAGCTTTCCTCAT +
Preference number: 3 (lower is better)
Translates to: ETEREKPQDLDTGLDKGHESCVG*SVSFPH
Trigger: ATGAGGAAAGCTGACTGACAAGCCAACGCAGCTCTC...GTGACCCTTGTCTAAACCTGTGTCAAGATCTTGGGGCTTCTCCCTTTCTGTCTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000004985.11
ENSMUST00000140973.9
ENSMUST00000156029.8
ENSMUST00000232997.2
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233709.2
3UTR-3UTR CAA 90 bp AAGGAGACAGAAAGGGAGAAGCCCCAAGATCTTGACACAGGTTTAGACAAGGGTCCTCTGAGAGCTGCGTaGGCTTGTCAGTCAGCTTTC +
Preference number: 3 (lower is better)
Translates to: KETEREKPQDLDTGLDKGPLRAA*ACQSAF
Trigger: GAAAGCTGACTGACAAGCCAACGCAGCTCTCAGAGG...ACCCTTGTCTAAACCTGTGTCAAGATCTTGGGGCTTCTCCCTTTCTGTCTCCTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000004985.11
ENSMUST00000140973.9
ENSMUST00000156029.8
ENSMUST00000232997.2
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233709.2
3UTR-3UTR CAA 90 bp GCATCCTGTCCTAAAAGAGCAGTTTTTAAAGTGGGACTCGGAGAGAGGGAAGGAAAGTCAACATGGCAATaGGCGGTCTGCAAACCCGCC +
Preference number: 3 (lower is better)
Translates to: ASCPKRAVFKVGLGEREGKSTWQ*AVCKPA
Trigger: GGCGGGTTTGCAGACCGCCAATTGCCATGTTGACTT...TCCTTCCCTCTCTCCGAGTCCCACTTTAAAAACTGCTCTTTTAGGACAGGATGC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 8 transcripts:
ENSMUST00000004985.11
ENSMUST00000140973.9
ENSMUST00000156029.8
ENSMUST00000232997.2
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233709.2
3UTR-3UTR CAA 90 bp GCATCCTGTCCTAAAAGAGCAGTTTTTAAAGTGGGACTCGGAGAGAGGGAAGGATTCCGGATGCTGGTCTaGCGGCCTTCTAGCATCTTG +
Preference number: 3 (lower is better)
Translates to: ASCPKRAVFKVGLGEREGFRMLV*RPSSIL
Trigger: CAAGATGCTAGAAGGCCGCAAGACCAGCATCCGGAA...TCCTTCCCTCTCTCCGAGTCCCACTTTAAAAACTGCTCTTTTAGGACAGGATGC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000140973.9
ENSMUST00000156029.8
ENSMUST00000232997.2
ENSMUST00000233709.2
3UTR-3UTR CAA 90 bp GCTGTTTCTACTTCTAAGTGGTTCTTCAGTGGAATATCCCCAGGGACCTCGGGTAACCGGCTTGAAGGTTaGCTGTCGCTGATGGGTTTC +
Preference number: 3 (lower is better)
Translates to: AVSTSKWFFSGISPGTSGNRLEG*LSLMGF
Trigger: GAAACCCATCAGCGACAGCAAACCTTCAAGCCGGTT...ACCCGAGGTCCCTGGGGATATTCCACTGAAGAACCACTTAGAAGTAGAAACAGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000232705.2
ENSMUST00000232997.2
3UTR GCA 72 bp GGACTAAGCCACCAACTGAGTACACATGGCTCCAGGTaGATATATAGCAGAGGATGGCCTTGTCAGGCATCA +
Preference number: 3 (lower is better)
Translates to: GLSHQLSTHGSR*IYSRGWPCQAS
Trigger: TGATGCCTGACAAGGCCATCCTCTGCTATATATGCACCTGGAGCCATGTGTACTCAGTTGGTGGCTTAGTCC
51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000004985.11
3UTR GCA 72 bp TCACTAAGCAAGCATTGCAAGGGCTCGCTCCCCAGTTaGAGGGCTGATTTTTCTAAGAGCTCCTCATCTTCC +
Preference number: 3 (lower is better)
Translates to: SLSKHCKGSLPS*RADFSKSSSSS
Trigger: GGAAGATGAGGAGCTCTTAGAAAAATCAGCCCTGCAACTGGGGAGCGAGCCCTTGCAATGCTTGCTTAGTGA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000232705.2
ENSMUST00000232997.2
3UTR GCA 72 bp GACAGTCTGTCAATGCCATTGTCACTAAGCAAGCATTaGAAGGGCTCGCTCCCCAGTTGCAGGGCTGATTTT +
Preference number: 3 (lower is better)
Translates to: DSLSMPLSLSKH*KGSLPSCRADF
Trigger: AAAATCAGCCCTGCAACTGGGGAGCGAGCCCTTGCAATGCTTGCTTAGTGACAATGGCATTGACAGACTGTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000232705.2
ENSMUST00000232997.2
3UTR-3UTR CAA 90 bp AGATCCGAGCCGCATCCTGTCCTAAAAGAGCAGTTTTTAAAGTGGGACTCGGAGCATGATTGGTCAATATaGGGTCTTGCCCTCGGAGAC +
Preference number: 3 (lower is better)
Translates to: RSEPHPVLKEQFLKWDSEHDWSI*GLALGD
Trigger: GTCTCCGAGGGCAAGACCCAATATTGACCAATCATG...CTCCGAGTCCCACTTTAAAAACTGCTCTTTTAGGACAGGATGCGGCTCGGATCT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 8 transcripts:
ENSMUST00000004985.11
ENSMUST00000140973.9
ENSMUST00000156029.8
ENSMUST00000232997.2
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233709.2
3UTR-3UTR CAA 90 bp AAAAATAACATCAAGGTAGAAGTCAACATGGCAATTGGCGGTCTGCAAACCCGCTCGGGTGGGAGTTTTTaGGCACACAGCAGCCCTCCA +
Preference number: 3 (lower is better)
Translates to: KNNIKVEVNMAIGGLQTRSGGSF*AHSSPP
Trigger: TGGAGGGCTGCTGTGTGCCAAAAAACTCCCACCCGA...GCGGGTTTGCAGACCGCCAATTGCCATGTTGACTTCTACCTTGATGTTATTTTT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 8 transcripts:
ENSMUST00000004985.11
ENSMUST00000140973.9
ENSMUST00000156029.8
ENSMUST00000232997.2
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233709.2
3UTR-3UTR CAA 90 bp TTTGTTGGTTCCCTTTTAAACTCTGGCTCGAGTCCCAAAAGTGTAAGAAGTTGGCTAGGCCCTCTTGCCTaGTGGGCCAGGTCTATCTCC +
Preference number: 3 (lower is better)
Translates to: FVGSLLNSGSSPKSVRSWLGPLA*WARSIS
Trigger: GGAGATAGACCTGGCCCACAAGGCAAGAGGGCCTAG...CCAACTTCTTACACTTTTGGGACTCGAGCCAGAGTTTAAAAGGGAACCAACAAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 8 transcripts:
ENSMUST00000004985.11
ENSMUST00000140973.9
ENSMUST00000156029.8
ENSMUST00000232997.2
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233709.2
3UTR-3UTR CAA 90 bp AGCCCTCCAGGGGAACCACATGATTGGTCAATATTGGGTCTTGCCCTCGGAGACATCAATTTGGTGATGTaGCTGTCAGTTTGGCACAAG +
Preference number: 3 (lower is better)
Translates to: SPPGEPHDWSILGLALGDINLVM*LSVWHK
Trigger: CTTGTGCCAAACTGACAGCAACATCACCAAATTGAT...GTCTCCGAGGGCAAGACCCAATATTGACCAATCATGTGGTTCCCCTGGAGGGCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 10 transcripts:
ENSMUST00000004985.11
ENSMUST00000140973.9
ENSMUST00000156029.8
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
3UTR-3UTR CAA 90 bp GCCCTCTTGGTGAGTTTTGTTGGTTCCCTTTTAAACTCTGGCTCGAGTCCCAAACAGAACCTGGCCCTCTaGGTGAGTTTTGTTGGTTCC +
Preference number: 3 (lower is better)
Translates to: ALLVSFVGSLLNSGSSPKQNLAL*VSFVGS
Trigger: GGAACCAACAAAACTCACCAAGAGGGCCAGGTTCTG...TTTGGGACTCGAGCCAGAGTTTAAAAGGGAACCAACAAAACTCACCAAGAGGGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 8 transcripts:
ENSMUST00000004985.11
ENSMUST00000140973.9
ENSMUST00000156029.8
ENSMUST00000232997.2
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233709.2
3UTR TCA 72 bp GTCAGGCATCATTGGGAGAAGAGGTCTTTGATCCAATaGAGGCTGGACAGATGCTCCAGTGTAGGGGAATCA +
Preference number: 3 (lower is better)
Translates to: VRHHWEKRSLIQ*RLDRCSSVGES
Trigger: TGATTCCCCTACACTGGAGCATCTGTCCAGCCTTCATTGGATCAAAGACCTCTTCTCCCAATGATGCCTGAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000004985.11
3UTR GCA 72 bp AGTAGGGAGGACAGTAGCAAACTCCCACAGGCTCTTTaGACAGACATGCTATTCCTGAGAATGCCTCTTGAG +
Preference number: 3 (lower is better)
Translates to: SREDSSKLPQAL*TDMLFLRMPLE
Trigger: CTCAAGAGGCATTCTCAGGAATAGCATGTCTGTGCAAAGAGCCTGTGGGAGTTTGCTACTGTCCTCCCTACT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000004985.11
3UTR GCA 72 bp TTCCGCCTCTACAATCAAGCTCTCCCAATAAACATGTaGAGAAGGATCCTGTTGCAGCGTCGTTCTTCCTGG +
Preference number: 3 (lower is better)
Translates to: FRLYNQALPINM*RRILLQRRSSW
Trigger: CCAGGAAGAACGACGCTGCAACAGGATCCTTCTGCACATGTTTATTGGGAGAGCTTGATTGTAGAGGCGGAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000004985.11
3UTR CCA 72 bp GAGCCGCATCCTGTCCTAAAAGAGCAGTTTTTAAAGTaGGACTCGGAGAGAGGGAAGGATTCCGAGACTGAA +
Preference number: 3 (lower is better)
Translates to: EPHPVLKEQFLK*DSERGKDSETE
Trigger: TTCAGTCTCGGAATCCTTCCCTCTCTCCGAGTCCCACTTTAAAAACTGCTCTTTTAGGACAGGATGCGGCTC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 8 transcripts:
ENSMUST00000004985.11
ENSMUST00000140973.9
ENSMUST00000156029.8
ENSMUST00000232997.2
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233709.2
3UTR-3UTR CAA 90 bp GCATCCTGTCCTAAAAGAGCAGTTTTTAAAGTGGGACTCGGAGAGAGGGAAGGAATCAATGTCAGAACCTaGCCTGCCCTGAGGTATGGT +
Preference number: 3 (lower is better)
Translates to: ASCPKRAVFKVGLGEREGINVRT*PALRYG
Trigger: ACCATACCTCAGGGCAGGCAAGGTTCTGACATTGAT...TCCTTCCCTCTCTCCGAGTCCCACTTTAAAAACTGCTCTTTTAGGACAGGATGC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 8 transcripts:
ENSMUST00000004985.11
ENSMUST00000140973.9
ENSMUST00000156029.8
ENSMUST00000232997.2
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233709.2
3UTR-3UTR CAA 90 bp GGGACTCGGAGAGAGGGAAGGATTCCGAGACTGAAAAATAGAGACAGAGGAGATGGTTTTCCTTCCTTTTaGAGGGTAGGGATTGAGGAG +
Preference number: 3 (lower is better)
Translates to: GTRREGRIPRLKNRDRGDGFPSF*RVGIEE
Trigger: CTCCTCAATCCCTACCCTCAAAAAGGAAGGAAAACC...ATCTCCTCTGTCTCTATTTTTCAGTCTCGGAATCCTTCCCTCTCTCCGAGTCCC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 8 transcripts:
ENSMUST00000004985.11
ENSMUST00000140973.9
ENSMUST00000156029.8
ENSMUST00000232997.2
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233709.2
3UTR-3UTR CAA 90 bp GCTGTTTCTACTTCTAAGTGGTTCTTCAGTGGAATATCCCCAGGGACCTCGGGTGGTTTTCCTTCCTTTTaGAGGGTAGGGATTGAGGAG +
Preference number: 3 (lower is better)
Translates to: AVSTSKWFFSGISPGTSGGFPSF*RVGIEE
Trigger: CTCCTCAATCCCTACCCTCAAAAAGGAAGGAAAACC...ACCCGAGGTCCCTGGGGATATTCCACTGAAGAACCACTTAGAAGTAGAAACAGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 8 transcripts:
ENSMUST00000004985.11
ENSMUST00000140973.9
ENSMUST00000156029.8
ENSMUST00000232997.2
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233709.2
3UTR-3UTR CAA 90 bp GCATCCTGTCCTAAAAGAGCAGTTTTTAAAGTGGGACTCGGAGAGAGGGAAGGAAACCCGCCTGCGGCTTaGGTGCTTAAAGAAGTGAAA +
Preference number: 3 (lower is better)
Translates to: ASCPKRAVFKVGLGEREGNPPAA*VLKEVK
Trigger: TTTCACTTCTTTAAGCACCAAAGCCGCAGGCGGGTT...TCCTTCCCTCTCTCCGAGTCCCACTTTAAAAACTGCTCTTTTAGGACAGGATGC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 8 transcripts:
ENSMUST00000004985.11
ENSMUST00000140973.9
ENSMUST00000156029.8
ENSMUST00000232997.2
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233709.2
3UTR-3UTR CAA 90 bp TACAGTTATGTACACCACGCCCTGTCCCGCGTGGCTGTGCTGTTTGCTGGACAGGTAAGAAGTTGGTGGTaGGTTGGTTGTATTTCTTTA +
Preference number: 3 (lower is better)
Translates to: YSYVHHALSRVAVLFAGQVRSWW*VGCISL
Trigger: TAAAGAAATACAACCAACCAACCACCAACTTCTTAC...CTGTCCAGCAAACAGCACAGCCACGCGGGACAGGGCGTGGTGTACATAACTGTA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000004985.11
ENSMUST00000140973.9
ENSMUST00000156029.8
ENSMUST00000232997.2
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233709.2
3UTR GCA 72 bp GTCGTTCTTCCTGGCCAGTCGAGCGTGCGCAAGAACTaGCCAGCTCATAATTATGGATTTCTAAACCTGTTT +
Preference number: 3 (lower is better)
Translates to: VVLPGQSSVRKN*PAHNYGFLNLF
Trigger: AAACAGGTTTAGAAATCCATAATTATGAGCTGGGCAGTTCTTGCGCACGCTCGACTGGCCAGGAAGAACGAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000004985.11
3UTR CCA 72 bp AGTACACATGGCTCCAGGTGCATATATAGCAGAGGATaGCCTTGTCAGGCATCATTGGGAGAAGAGGTCTTT +
Preference number: 3 (lower is better)
Translates to: STHGSRCIYSRG*PCQASLGEEVF
Trigger: AAAGACCTCTTCTCCCAATGATGCCTGACAAGGCCATCCTCTGCTATATATGCACCTGGAGCCATGTGTACT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000004985.11
3UTR-3UTR CAA 90 bp GTTGGTTCCCTTTTAAACTCTGGCTCGAGTCCCAAAAGTGTAAGAAGTTGGTGGATCAATGTCAGAACCTaGCCTGCCCTGAGGTATGGT +
Preference number: 3 (lower is better)
Translates to: VGSLLNSGSSPKSVRSWWINVRT*PALRYG
Trigger: ACCATACCTCAGGGCAGGCAAGGTTCTGACATTGAT...CCACCAACTTCTTACACTTTTGGGACTCGAGCCAGAGTTTAAAAGGGAACCAAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 8 transcripts:
ENSMUST00000004985.11
ENSMUST00000140973.9
ENSMUST00000156029.8
ENSMUST00000232997.2
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233709.2
3UTR-3UTR CAA 90 bp GCCCTGTGCCACAGCAGATCCGAGCCGCATCCTGTCCTAAAAGAGCAGTTTTTACAAAAGTGTAAGAAGTaGGTGGTTGGTTGGTTGTAT +
Preference number: 3 (lower is better)
Translates to: ALCHSRSEPHPVLKEQFLQKCKK*VVGWLY
Trigger: ATACAACCAACCAACCACCAACTTCTTACACTTTTG...TAAAAACTGCTCTTTTAGGACAGGATGCGGCTCGGATCTGCTGTGGCACAGGGC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 8 transcripts:
ENSMUST00000004985.11
ENSMUST00000140973.9
ENSMUST00000156029.8
ENSMUST00000232997.2
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233709.2
3UTR-3UTR CAA 90 bp GGCTGTGCTGTTTGCTGGACAGAACCTGGCCCTCTTGGTGAGTTTTGTTGGTTCCAAAAGTGTAAGAAGTaGGTGGTTGGTTGGTTGTAT +
Preference number: 3 (lower is better)
Translates to: GCAVCWTEPGPLGEFCWFQKCKK*VVGWLY
Trigger: ATACAACCAACCAACCACCAACTTCTTACACTTTTG...GAACCAACAAAACTCACCAAGAGGGCCAGGTTCTGTCCAGCAAACAGCACAGCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 8 transcripts:
ENSMUST00000004985.11
ENSMUST00000140973.9
ENSMUST00000156029.8
ENSMUST00000232997.2
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233709.2
3UTR-3UTR CAA 90 bp GAGACAGAAAGGGAGAAGCCCCAAGATCTTGACACAGGTTTAGACAAGGGTCACATCAATTTGGTGATGTaGCTGTCAGTTTGGCACAAG +
Preference number: 3 (lower is better)
Translates to: ETEREKPQDLDTGLDKGHINLVM*LSVWHK
Trigger: CTTGTGCCAAACTGACAGCAACATCACCAAATTGAT...GTGACCCTTGTCTAAACCTGTGTCAAGATCTTGGGGCTTCTCCCTTTCTGTCTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000004985.11
ENSMUST00000140973.9
ENSMUST00000156029.8
ENSMUST00000232997.2
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233709.2
3UTR-3UTR CAA 90 bp AAAAATAACATCAAGGTAGAAGTCAACATGGCAATTGGCGGTCTGCAAACCCGCGTGGGGCAGGCAATTTaGAATCATCTCTGTCCCCTT +
Preference number: 3 (lower is better)
Translates to: KNNIKVEVNMAIGGLQTRVGQAI*NHLCPL
Trigger: AAGGGGACAGAGATGATTCAAAATTGCCTGCCCCAC...GCGGGTTTGCAGACCGCCAATTGCCATGTTGACTTCTACCTTGATGTTATTTTT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000232997.2
3UTR-3UTR CAA 90 bp ATAAAGTCACTTTCTACAATAAATAGAGCATCATGTGCTTCACAGCAGACCAGATCGGGTGGGAGTTTTTaGGCACACAGCAGCCCTCCA +
Preference number: 3 (lower is better)
Translates to: IKSLSTINRASCASQQTRSGGSF*AHSSPP
Trigger: TGGAGGGCTGCTGTGTGCCAAAAAACTCCCACCCGA...TCTGGTCTGCTGTGAAGCACATGATGCTCTATTTATTGTAGAAAGTGACTTTAT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000004985.11
ENSMUST00000140973.9
ENSMUST00000156029.8
ENSMUST00000232997.2
ENSMUST00000233088.2
3UTR-3UTR CAA 90 bp GGGACTCGGAGAGAGGGAAGGATTCCGAGACTGAAAAATAGAGACAGAGGAGATCAAAAGTGTAAGAAGTaGGTGGTTGGTTGGTTGTAT +
Preference number: 3 (lower is better)
Translates to: GTRREGRIPRLKNRDRGDQKCKK*VVGWLY
Trigger: ATACAACCAACCAACCACCAACTTCTTACACTTTTG...ATCTCCTCTGTCTCTATTTTTCAGTCTCGGAATCCTTCCCTCTCTCCGAGTCCC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 8 transcripts:
ENSMUST00000004985.11
ENSMUST00000140973.9
ENSMUST00000156029.8
ENSMUST00000232997.2
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233709.2
3UTR TCA 72 bp TCTTTGCACAGACATGCTATTCCTGAGAATGCCTCTTaGGTCTATGCTTCAAGATGCCCCTTTCTGAAAGGG +
Preference number: 3 (lower is better)
Translates to: SLHRHAIPENAS*VYASRCPFLKG
Trigger: CCCTTTCAGAAAGGGGCATCTTGAAGCATAGACTCAAGAGGCATTCTCAGGAATAGCATGTCTGTGCAAAGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000004985.11
3UTR-3UTR CAA 90 bp TATAAAAGCAGCACCAGTTCTGGGCTCCAGGTTTTTCCGCCTCTACAATCAAGCCAAAAGTGTAAGAAGTaGGTGGTTGGTTGGTTGTAT +
Preference number: 3 (lower is better)
Translates to: YKSSTSSGLQVFPPLQSSQKCKK*VVGWLY
Trigger: ATACAACCAACCAACCACCAACTTCTTACACTTTTG...GCTTGATTGTAGAGGCGGAAAAACCTGGAGCCCAGAACTGGTGCTGCTTTTATA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000004985.11
3UTR TCA 72 bp GTTGTCTGCATGCTGGACGCACTTTATTATGTTATATaGATTAGGCCCTGTGAAGGTAACCAAGAGCTGTGC +
Preference number: 3 (lower is better)
Translates to: VVCMLDALYYVI*IRPCEGNQELC
Trigger: GCACAGCTCTTGGTTACCTTCACAGGGCCTAATTCATATAACATAATAAAGTGCGTCCAGCATGCAGACAAC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000004985.11
3UTR-3UTR CAA 90 bp GCCCTCTTGGTGAGTTTTGTTGGTTCCCTTTTAAACTCTGGCTCGAGTCCCAAAGTAAGAAGTTGGTGGTaGGTTGGTTGTATTTCTTTA +
Preference number: 3 (lower is better)
Translates to: ALLVSFVGSLLNSGSSPKVRSWW*VGCISL
Trigger: TAAAGAAATACAACCAACCAACCACCAACTTCTTAC...TTTGGGACTCGAGCCAGAGTTTAAAAGGGAACCAACAAAACTCACCAAGAGGGC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 8 transcripts:
ENSMUST00000004985.11
ENSMUST00000140973.9
ENSMUST00000156029.8
ENSMUST00000232997.2
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233709.2
3UTR-3UTR CAA 90 bp GAGGGAAGGATTCCGAGACTGAAAAATAGAGACAGAGGAGATAGTGTTGGGGGAGTAAGAAGTTGGTGGTaGGTTGGTTGTATTTCTTTA +
Preference number: 3 (lower is better)
Translates to: EGRIPRLKNRDRGDSVGGVRSWW*VGCISL
Trigger: TAAAGAAATACAACCAACCAACCACCAACTTCTTAC...TCCCCCAACACTATCTCCTCTGTCTCTATTTTTCAGTCTCGGAATCCTTCCCTC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 8 transcripts:
ENSMUST00000004985.11
ENSMUST00000140973.9
ENSMUST00000156029.8
ENSMUST00000232997.2
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233709.2
3UTR GCA 72 bp GTCTGCACTGTTTATGCAGCACAAGGGTTGTCTGCATaGTGGACGCACTTTATTATGTTATATGAATTAGGC +
Preference number: 3 (lower is better)
Translates to: VCTVYAAQGLSA*WTHFIMLYELG
Trigger: GCCTAATTCATATAACATAATAAAGTGCGTCCAGCATGCAGACAACCCTTGTGCTGCATAAACAGTGCAGAC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000004985.11
3UTR CCA 72 bp TGCACTGTTTATGCAGCACAAGGGTTGTCTGCATGCTaGACGCACTTTATTATGTTATATGAATTAGGCCCT +
Preference number: 3 (lower is better)
Translates to: CTVYAAQGLSAC*THFIMLYELGP
Trigger: AGGGCCTAATTCATATAACATAATAAAGTGCGTCCAGCATGCAGACAACCCTTGTGCTGCATAAACAGTGCA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000004985.11
CDS-3UTR GCA 90 bp GGCGGGTGCTGGAGGGCAGTGCCATGCCGCACGCCACCCGCCACCCGCCACCCGATGGGGACACCGTTGTaGAGGAGGCCCTCCCGGGGC +
Preference number: 4 (lower is better)
Translates to: GGCWRAVPCRTPPATRHPMGTPL*RRPSRG
Trigger: GCCCCGGGAGGGCCTCCTGCACAACGGTGTCCCCAT...CGGGTGGCGGGTGGCGGGTGGCGTGCGGCATGGCACTGCCCTCCAGCACCCGCC
76% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000004985.11
ENSMUST00000156029.8
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
CDS-3UTR CCA 90 bp GGCGGGTGCTGGAGGGCAGTGCCATGCCGCACGCCACCCGCCACCCGCCACCCGTCGATTAGGGACTGCTaGGCCCCACTGCTGCGGCTC +
Preference number: 4 (lower is better)
Translates to: GGCWRAVPCRTPPATRHPSIRDC*APLLRL
Trigger: GAGCCGCAGCAGTGGGGCCCAGCAGTCCCTAATCGA...CGGGTGGCGGGTGGCGGGTGGCGTGCGGCATGGCACTGCCCTCCAGCACCCGCC
73% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000004985.11
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233709.2
CDS-3UTR CCA 90 bp GGGCGGGTGCTGGAGGGCAGTGCCATGCCGCACGCCACCCGCCACCCGCCACCCCACACGAGACAGGGCTaGCTTCCCACGGCTGCGTTT +
Preference number: 4 (lower is better)
Translates to: GRVLEGSAMPHATRHPPPHTRQG*LPTAAF
Trigger: AAACGCAGCCGTGGGAAGCCAGCCCTGTCTCGTGTG...GGGTGGCGGGTGGCGGGTGGCGTGCGGCATGGCACTGCCCTCCAGCACCCGCCC
72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000004985.11
ENSMUST00000156029.8
ENSMUST00000233646.2
ENSMUST00000233709.2
CDS-3UTR GCA 90 bp CACCCGCCACCCGCCACCCGCCGCCCGTGCCGCGGTGATCATGCTGATGCAGTGACTGCTGGGCCCCACTaGTGCGGCTCTCCAGGTAGG +
Preference number: 4 (lower is better)
Translates to: HPPPATRRPCRGDHADAVTAGPH*CGSPGR
Trigger: CCTACCTGGAGAGCCGCAGCAGTGGGGCCCAGCAGT...CACTGCATCAGCATGATCACCGCGGCACGGGCGGCGGGTGGCGGGTGGCGGGTG
71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000004985.11
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233709.2
CDS-3UTR CCA 90 bp GGGCGGGTGCTGGAGGGCAGTGCCATGCCGCACGCCACCCGCCACCCGCCACCCGGCTCCAGGTCTCCGTaGTCTTCAAAGGGCATCAGG +
Preference number: 4 (lower is better)
Translates to: GRVLEGSAMPHATRHPPPGSRSP*SSKGIR
Trigger: CCTGATGCCCTTTGAAGACCACGGAGACCTGGAGCC...GGGTGGCGGGTGGCGGGTGGCGTGCGGCATGGCACTGCCCTCCAGCACCCGCCC
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000004985.11
ENSMUST00000156029.8
ENSMUST00000233561.2
ENSMUST00000233646.2
CDS-3UTR TCA 90 bp GGGCGGGTGCTGGAGGGCAGTGCCATGCCGCACGCCACCCGCCACCCGCCACCCAAGGTGTGGTACAGGTaGGATTCCAGCTTCCGCCTC +
Preference number: 4 (lower is better)
Translates to: GRVLEGSAMPHATRHPPPKVWYR*DSSFRL
Trigger: GAGGCGGAAGCTGGAATCTCACCTGTACCACACCTT...GGGTGGCGGGTGGCGGGTGGCGTGCGGCATGGCACTGCCCTCCAGCACCCGCCC
70% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000004985.11
ENSMUST00000156029.8
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233709.2
CDS-3UTR GCA 90 bp CACCCGCCACCCGCCACCCGCCGCCCGTGCCGCGGTGATCATGCTGATGCAGTGTCGTCGATTAGGGACTaGTGGGCCCCACTGCTGCGG +
Preference number: 4 (lower is better)
Translates to: HPPPATRRPCRGDHADAVSSIRD*WAPLLR
Trigger: CCGCAGCAGTGGGGCCCAGCAGTCCCTAATCGACGA...CACTGCATCAGCATGATCACCGCGGCACGGGCGGCGGGTGGCGGGTGGCGGGTG
70% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000004985.11
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233709.2
CDS-3UTR GCA 90 bp GGCGGGTGCTGGAGGGCAGTGCCATGCCGCACGCCACCCGCCACCCGCCACCCGAGCTCCATGGCAGCCTaGTGTACTTTGACCTGCTCC +
Preference number: 4 (lower is better)
Translates to: GGCWRAVPCRTPPATRHPSSMAA*CTLTCS
Trigger: GGAGCAGGTCAAAGTACAGCAGGCTGCCATGGAGCT...CGGGTGGCGGGTGGCGGGTGGCGTGCGGCATGGCACTGCCCTCCAGCACCCGCC
70% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000004985.11
ENSMUST00000156029.8
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233709.2
CDS-3UTR CCA 90 bp GGGCGGGTGCTGGAGGGCAGTGCCATGCCGCACGCCACCCGCCACCCGCCACCCCTTTATGGCACTGAATaGCCGCGCCCAGCCCTTTCT +
Preference number: 4 (lower is better)
Translates to: GRVLEGSAMPHATRHPPPLYGTE*PRPALS
Trigger: AGAAAGGGCTGGGCGCGGCCATTCAGTGCCATAAAG...GGGTGGCGGGTGGCGGGTGGCGTGCGGCATGGCACTGCCCTCCAGCACCCGCCC
70% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000004985.11
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233709.2
CDS-3UTR TCA 90 bp CACCCGCCACCCGCCACCCGCCGCCCGTGCCGCGGTGATCATGCTGATGCAGTGAGGGGATTCCTGTTCTaGCAAGGAAGGCGCAGGCCC +
Preference number: 4 (lower is better)
Translates to: HPPPATRRPCRGDHADAVRGFLF*QGRRRP
Trigger: GGGCCTGCGCCTTCCTTGTCAGAACAGGAATCCCCT...CACTGCATCAGCATGATCACCGCGGCACGGGCGGCGGGTGGCGGGTGGCGGGTG
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000004985.11
ENSMUST00000156029.8
CDS-3UTR CCA 90 bp GGGCGGGTGCTGGAGGGCAGTGCCATGCCGCACGCCACCCGCCACCCGCCACCCGTAAGAGGGTATCTGTaGGACAGTGACCATGGGGAG +
Preference number: 4 (lower is better)
Translates to: GRVLEGSAMPHATRHPPPVRGYL*DSDHGE
Trigger: CTCCCCATGGTCACTGTCCCACAGATACCCTCTTAC...GGGTGGCGGGTGGCGGGTGGCGTGCGGCATGGCACTGCCCTCCAGCACCCGCCC
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000004985.11
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233709.2
CDS-3UTR GCA 90 bp GCCCCTCTCAGGATCATAGCCGATGTTCTCTGCCTGCCGCCGGGCGTGCCGCAGCGGCCCTCGGCATTCTaGCGTGACTTTCGGCGAGGC +
Preference number: 4 (lower is better)
Translates to: APLRIIADVLCLPPGVPQRPSAF*RDFRRG
Trigger: GCCTCGCCGAAAGTCACGGCAGAATGCCGAGGGCCG...CTGCGGCACGCCCGGCGGCAGGCAGAGAACATCGGCTATGATCCTGAGAGGGGC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000232705.2
CDS-3UTR CCA 90 bp CACCCGCCACCCGCCACCCGCCGCCCGTGCCGCGGTGATCATGCTGATGCAGTGACACGAAAGCTGGGCTaGGGGAGGTGGAAGGAGGTA +
Preference number: 4 (lower is better)
Translates to: HPPPATRRPCRGDHADAVTRKLG*GRWKEV
Trigger: TACCTCCTTCCACCTCCCCCAGCCCAGCTTTCGTGT...CACTGCATCAGCATGATCACCGCGGCACGGGCGGCGGGTGGCGGGTGGCGGGTG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000004985.11
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233709.2
CDS-3UTR GCA 90 bp TGCGCAGCATGCGGACACGACGGGTGCGGGCCCCGCTGGACCGCATGGTGCTCATCGTCCTGCTCCCGCTaGTCAGCATTTCTCTGGGAC +
Preference number: 4 (lower is better)
Translates to: CAACGHDGCGPRWTAWCSSSCSR*SAFLWD
Trigger: GTCCCAGAGAAATGCTGAGCAGCGGGAGCAGGACGA...TGAGCACCATGCGGTCCAGCGGGGCCCGCACCCGTCGTGTCCGCATGCTGCGCA
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000232705.2
ENSMUST00000232997.2
CDS-3UTR GCA 90 bp GGCGGGTGCTGGAGGGCAGTGCCATGCCGCACGCCACCCGCCACCCGCCACCCGTCATGGCGAAGTTTCTaGCAGTATTTGAGCTCCTCC +
Preference number: 4 (lower is better)
Translates to: GGCWRAVPCRTPPATRHPSWRSF*QYLSSS
Trigger: GGAGGAGCTCAAATACTGGCAGAAACTTCGCCATGA...CGGGTGGCGGGTGGCGGGTGGCGTGCGGCATGGCACTGCCCTCCAGCACCCGCC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000004985.11
ENSMUST00000156029.8
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233709.2
CDS-3UTR GCA 90 bp GGCAGCAATCCCAGAGGGCGGGTGCTGGAGGGCAGTGCCATGCCGCACGCCACCGCATCAGGAGGCTTCTaGCTGAGCCACTGTGGTCAG +
Preference number: 4 (lower is better)
Translates to: GSNPRGRVLEGSAMPHATASGGF*LSHCGQ
Trigger: CTGACCACAGTGGCTCAGGCAGAAGCCTCCTGATGC...GGTGGCGTGCGGCATGGCACTGCCCTCCAGCACCCGCCCTCTGGGATTGCTGCC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000004985.11
ENSMUST00000156029.8
ENSMUST00000233646.2
CDS-3UTR CCA 90 bp CACCCGCCACCCGCCACCCGCCGCCCGTGCCGCGGTGATCATGCTGATGCAGTGTTCACTGAGGCTCCTTaGGGAGTCGCCCTTTCTCCT +
Preference number: 4 (lower is better)
Translates to: HPPPATRRPCRGDHADAVFTEAP*GVALSP
Trigger: AGGAGAAAGGGCGACTCCCCAAGGAGCCTCAGTGAA...CACTGCATCAGCATGATCACCGCGGCACGGGCGGCGGGTGGCGGGTGGCGGGTG
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000004985.11
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233709.2
CDS-3UTR TCA 90 bp GGGCGGTGTGGGGGAAGGGAAGCTCTGAGGGTTCCCGAGGGACCCTGGCACATCAGGGGATTCCTGTTCTaGCAAGGAAGGCGCAGGCCC +
Preference number: 4 (lower is better)
Translates to: GRCGGREALRVPEGPWHIRGFLF*QGRRRP
Trigger: GGGCCTGCGCCTTCCTTGTCAGAACAGGAATCCCCT...GATGTGCCAGGGTCCCTCGGGAACCCTCAGAGCTTCCCTTCCCCCACACCGCCC
66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000004985.11
ENSMUST00000156029.8
ENSMUST00000233701.2
CDS-3UTR GCA 90 bp GCCACCCGCCGCCCGTGCCGCGGTGATCATGCTGATGCAGTGAGGCTTATGGCTGCTGGGCCCCACTGCTaGGGCTCTCCAGGTAGGATT +
Preference number: 4 (lower is better)
Translates to: ATRRPCRGDHADAVRLMAAGPHC*GSPGRI
Trigger: AATCCTACCTGGAGAGCCGCAGCAGTGGGGCCCAGC...AGCCATAAGCCTCACTGCATCAGCATGATCACCGCGGCACGGGCGGCGGGTGGC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000004985.11
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233709.2
CDS-3UTR GCA 90 bp CAGGGCCTGCCATTAGAAAGAAGCTGCCGGCCATACACGTGGCAGGGGCAGCAGATGGGGACACCGTTGTaGAGGAGGCCCTCCCGGGGC +
Preference number: 4 (lower is better)
Translates to: QGLPLERSCRPYTWQGQQMGTPL*RRPSRG
Trigger: GCCCCGGGAGGGCCTCCTGCACAACGGTGTCCCCAT...CTGCTGCCCCTGCCACGTGTATGGCCGGCAGCTTCTTTCTAATGGCAGGCCCTG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 7 transcripts:
ENSMUST00000004985.11
ENSMUST00000140587.9
ENSMUST00000156029.8
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
CDS-3UTR TCA 90 bp TGCGCAGCATGCGGACACGACGGGTGCGGGCCCCGCTGGACCGCATGGTGCTCATGTGAAGCCGCTGCATaGACTGGGTCTTCCTCTGAA +
Preference number: 4 (lower is better)
Translates to: CAACGHDGCGPRWTAWCSCEAAA*TGSSSE
Trigger: TTCAGAGGAAGACCCAGTTCATGCAGCGGCTTCACA...TGAGCACCATGCGGTCCAGCGGGGCCCGCACCCGTCGTGTCCGCATGCTGCGCA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000232705.2
ENSMUST00000232997.2
CDS-3UTR TCA 90 bp CACCCGCCACCCGCCACCCGCCGCCCGTGCCGCGGTGATCATGCTGATGCAGTGGTTTCTGCCAGTATTTaGGCTCCTCCTTCACTGCAC +
Preference number: 4 (lower is better)
Translates to: HPPPATRRPCRGDHADAVVSASI*APPSLH
Trigger: GTGCAGTGAAGGAGGAGCTCAAATACTGGCAGAAAC...CACTGCATCAGCATGATCACCGCGGCACGGGCGGCGGGTGGCGGGTGGCGGGTG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000004985.11
ENSMUST00000156029.8
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233709.2
CDS-3UTR GCA 90 bp GGGCGGTGTGGGGGAAGGGAAGCTCTGAGGGTTCCCGAGGGACCCTGGCACATCTCGTCCTGCTCCCGCTaGTCAGCATTTCTCTGGGAC +
Preference number: 4 (lower is better)
Translates to: GRCGGREALRVPEGPWHISSCSR*SAFLWD
Trigger: GTCCCAGAGAAATGCTGAGCAGCGGGAGCAGGACGA...GATGTGCCAGGGTCCCTCGGGAACCCTCAGAGCTTCCCTTCCCCCACACCGCCC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 8 transcripts:
ENSMUST00000004985.11
ENSMUST00000156029.8
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR GCA 90 bp GAGGTATGGTTAGGTGGGAGAGACATGGAGAGAGCCGGCTGGCCCCAGAAAAGCCCGATGTTCTCTGCCTaGCGCCGGGCGTGCCGCAGG +
Preference number: 4 (lower is better)
Translates to: EVWLGGRDMERAGWPQKSPMFSA*RRACRR
Trigger: CCTGCGGCACGCCCGGCGGCAGGCAGAGAACATCGG...GCTTTTCTGGGGCCAGCCGGCTCTCTCCATGTCTCTCCCACCTAACCATACCTC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000004985.11
ENSMUST00000156029.8
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR GCA 90 bp GGGACTCAAGCGCCTGGCAGACATCCATCTAATGTAGCAGCTGGCCAGGAAGGATGCGGACACGACGGGTaGGGGCCCCGCTGGACCGCA +
Preference number: 4 (lower is better)
Translates to: GTQAPGRHPSNVAAGQEGCGHDG*GPRWTA
Trigger: TGCGGTCCAGCGGGGCCCGCACCCGTCGTGTCCGCA...TCCTTCCTGGCCAGCTGCTACATTAGATGGATGTCTGCCAGGCGCTTGAGTCCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000004985.11
ENSMUST00000156029.8
ENSMUST00000233701.2
CDS-3UTR GCA 90 bp CTGCTGGAGGGCTGTGAGTGGGGGAGGGTCCTTACAGGTGGGGTAGCTTCTACCCTGGCTTCCCACGGCTaGGTTTGGGAGGCGTCAGGC +
Preference number: 4 (lower is better)
Translates to: LLEGCEWGRVLTGGVASTLASHG*VWEASG
Trigger: GCCTGACGCCTCCCAAACGCAGCCGTGGGAAGCCAG...GGTAGAAGCTACCCCACCTGTAAGGACCCTCCCCCACTCACAGCCCTCCAGCAG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000004985.11
ENSMUST00000156029.8
ENSMUST00000233646.2
ENSMUST00000233709.2
CDS-3UTR GCA 90 bp CTTGCCCTCGGAGACCCAGTCCAGTCAGGGCCTGCCATTAGAAAGAAGCTGCCGATGGGGACACCGTTGTaGAGGAGGCCCTCCCGGGGC +
Preference number: 4 (lower is better)
Translates to: LALGDPVQSGPAIRKKLPMGTPL*RRPSRG
Trigger: GCCCCGGGAGGGCCTCCTGCACAACGGTGTCCCCAT...CGGCAGCTTCTTTCTAATGGCAGGCCCTGACTGGACTGGGTCTCCGAGGGCAAG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000004985.11
ENSMUST00000140587.9
ENSMUST00000156029.8
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
CDS-3UTR GCA 90 bp TCAGGGCCTGCCATTAGAAAGAAGCTGCCGGCCATACACGTGGCAGGGGCAGCAATGGGGACACCGTTGTaGAGGAGGCCCTCCCGGGGC +
Preference number: 4 (lower is better)
Translates to: SGPAIRKKLPAIHVAGAAMGTPL*RRPSRG
Trigger: GCCCCGGGAGGGCCTCCTGCACAACGGTGTCCCCAT...TGCTGCCCCTGCCACGTGTATGGCCGGCAGCTTCTTTCTAATGGCAGGCCCTGA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 7 transcripts:
ENSMUST00000004985.11
ENSMUST00000140587.9
ENSMUST00000156029.8
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
CDS-3UTR CCA 90 bp GAAGCTGCCGGCCATACACGTGGCAGGGGCAGCAGAGGTTCTCATGCCTCAGGGCCTCAGGGATCCAGATaGCGCAGACTACGTGGGCCC +
Preference number: 4 (lower is better)
Translates to: EAAGHTRGRGSRGSHASGPQGSR*RRLRGP
Trigger: GGGCCCACGTAGTCTGCGCCATCTGGATCCCTGAGG...CCCTGAGGCATGAGAACCTCTGCTGCCCCTGCCACGTGTATGGCCGGCAGCTTC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000004985.11
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR CCA 90 bp AACCTTGCCTGCCCTGAGGTATGGTTAGGTGGGAGAGACATGGAGAGAGCCGGCGGGTGCGGGCCCCGCTaGACCGCATGGTGCTCACCA +
Preference number: 4 (lower is better)
Translates to: NLACPEVWLGGRDMERAGGCGPR*TAWCSP
Trigger: TGGTGAGCACCATGCGGTCCAGCGGGGCCCGCACCC...GCCGGCTCTCTCCATGTCTCTCCCACCTAACCATACCTCAGGGCAGGCAAGGTT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000004985.11
ENSMUST00000156029.8
ENSMUST00000233701.2
CDS-3UTR CCA 90 bp GGGCGGTGTGGGGGAAGGGAAGCTCTGAGGGTTCCCGAGGGACCCTGGCACATCAGAGGGGTGTCAGGATaGCTGTCGGGGTTTGTGAGG +
Preference number: 4 (lower is better)
Translates to: GRCGGREALRVPEGPWHIRGVSG*LSGFVR
Trigger: CCTCACAAACCCCGACAGCCATCCTGACACCCCTCT...GATGTGCCAGGGTCCCTCGGGAACCCTCAGAGCTTCCCTTCCCCCACACCGCCC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000004985.11
ENSMUST00000156029.8
ENSMUST00000233701.2
3UTR CAA 72 bp GGTGGCGGTGGCTGTGCTAGCTTTTGCCGAAGGGCATaGATCTCCCTGCGCAGCATGCGGACACGACGGGTG +
Preference number: 4 (lower is better)
Translates to: GGGGCASFCRRA*ISLRSMRTRRV
Trigger: CACCCGTCGTGTCCGCATGCTGCGCAGGGAGATCAATGCCCTTCGGCAAAAGCTAGCACAGCCACCGCCACC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000232705.2
ENSMUST00000232997.2
CDS-3UTR TCA 90 bp AGGGTCACAGAGTCCACAGCTGACCAGCTACCTGGGGATAGGGGGACGTGTCGGCATCCCCGACTTCACTaGGGCTCCTTGGGGAGTCGC +
Preference number: 4 (lower is better)
Translates to: RVTESTADQLPGDRGTCRHPRLH*GSLGSR
Trigger: GCGACTCCCCAAGGAGCCTCAGTGAAGTCGGGGATG...CCGACACGTCCCCCTATCCCCAGGTAGCTGGTCAGCTGTGGACTCTGTGACCCT
63% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 5 transcripts:
ENSMUST00000004985.11
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233709.2
CDS-3UTR TCA 90 bp TCACAGAGTCCACAGCTGACCAGCTACCTGGGGATAGGGGGACGTGTCGGCTCCCATCCCCGACTTCACTaGGGCTCCTTGGGGAGTCGC +
Preference number: 4 (lower is better)
Translates to: SQSPQLTSYLGIGGRVGSHPRLH*GSLGSR
Trigger: GCGACTCCCCAAGGAGCCTCAGTGAAGTCGGGGATG...GGAGCCGACACGTCCCCCTATCCCCAGGTAGCTGGTCAGCTGTGGACTCTGTGA
63% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 5 transcripts:
ENSMUST00000004985.11
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233709.2
CDS-3UTR GCA 90 bp TGGGGGAGGGTCCTTACAGGTGGGGTAGCTTCTACCTGGGACTCAAGCGCCTGGGCTGGGCCCCACTGCTaGGGCTCTCCAGGTAGGATT +
Preference number: 4 (lower is better)
Translates to: WGRVLTGGVASTWDSSAWAGPHC*GSPGRI
Trigger: AATCCTACCTGGAGAGCCGCAGCAGTGGGGCCCAGC...CCAGGCGCTTGAGTCCCAGGTAGAAGCTACCCCACCTGTAAGGACCCTCCCCCA
63% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 7 transcripts:
ENSMUST00000004985.11
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR GCA 90 bp AGGGTCACAGAGTCCACAGCTGACCAGCTACCTGGGGATAGGGGGACGTGTCGGTCGTCGATTAGGGACTaGTGGGCCCCACTGCTGCGG +
Preference number: 4 (lower is better)
Translates to: RVTESTADQLPGDRGTCRSSIRD*WAPLLR
Trigger: CCGCAGCAGTGGGGCCCAGCAGTCCCTAATCGACGA...CCGACACGTCCCCCTATCCCCAGGTAGCTGGTCAGCTGTGGACTCTGTGACCCT
63% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 5 transcripts:
ENSMUST00000004985.11
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233709.2
CDS-3UTR GCA 90 bp GGGCGGTGTGGGGGAAGGGAAGCTCTGAGGGTTCCCGAGGGACCCTGGCACATCAGCTCCATGGCAGCCTaGTGTACTTTGACCTGCTCC +
Preference number: 4 (lower is better)
Translates to: GRCGGREALRVPEGPWHISSMAA*CTLTCS
Trigger: GGAGCAGGTCAAAGTACAGCAGGCTGCCATGGAGCT...GATGTGCCAGGGTCCCTCGGGAACCCTCAGAGCTTCCCTTCCCCCACACCGCCC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 8 transcripts:
ENSMUST00000004985.11
ENSMUST00000156029.8
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR GCA 90 bp TCCATCAGTGAGCTCTGCTTCTGTAAGGAGAGCACCCACCATCAGCCTCTAGCGTGCGGACACGACGGGTaGGGGCCCCGCTGGACCGCA +
Preference number: 4 (lower is better)
Translates to: SISELCFCKESTHHQPLACGHDG*GPRWTA
Trigger: TGCGGTCCAGCGGGGCCCGCACCCGTCGTGTCCGCA...CGCTAGAGGCTGATGGTGGGTGCTCTCCTTACAGAAGCAGAGCTCACTGATGGA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000004985.11
CDS-3UTR GCA 90 bp CCAGGGGAACCACATGATTGGTCAATATTGGGTCTTGCCCTCGGAGACCCAGTCTGCGGACACGACGGGTaGGGGCCCCGCTGGACCGCA +
Preference number: 4 (lower is better)
Translates to: PGEPHDWSILGLALGDPVCGHDG*GPRWTA
Trigger: TGCGGTCCAGCGGGGCCCGCACCCGTCGTGTCCGCA...GACTGGGTCTCCGAGGGCAAGACCCAATATTGACCAATCATGTGGTTCCCCTGG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000004985.11
ENSMUST00000156029.8
ENSMUST00000233701.2
CDS-3UTR GCA 90 bp AGTCAGGGCCTGCCATTAGAAAGAAGCTGCCGGCCATACACGTGGCAGGGGCAGCTGGCTTCCCACGGCTaGGTTTGGGAGGCGTCAGGC +
Preference number: 4 (lower is better)
Translates to: SQGLPLERSCRPYTWQGQLASHG*VWEASG
Trigger: GCCTGACGCCTCCCAAACGCAGCCGTGGGAAGCCAG...CTGCCCCTGCCACGTGTATGGCCGGCAGCTTCTTTCTAATGGCAGGCCCTGACT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000004985.11
ENSMUST00000156029.8
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR GCA 90 bp GTCTTGCCCTCGGAGACCCAGTCCAGTCAGGGCCTGCCATTAGAAAGAAGCTGCATGGGGACACCGTTGTaGAGGAGGCCCTCCCGGGGC +
Preference number: 4 (lower is better)
Translates to: VLPSETQSSQGLPLERSCMGTPL*RRPSRG
Trigger: GCCCCGGGAGGGCCTCCTGCACAACGGTGTCCCCAT...GCAGCTTCTTTCTAATGGCAGGCCCTGACTGGACTGGGTCTCCGAGGGCAAGAC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000004985.11
ENSMUST00000140587.9
ENSMUST00000156029.8
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
CDS-3UTR GCA 90 bp CTGCTGGAGGGCTGTGAGTGGGGGAGGGTCCTTACAGGTGGGGTAGCTTCTACCCCTCTCTCCAGCCTCTaGCTGCTTCTGCTCGCCCAG +
Preference number: 4 (lower is better)
Translates to: LLEGCEWGRVLTGGVASTPLSSL*LLLLAQ
Trigger: CTGGGCGAGCAGAAGCAGGCAGAGGCTGGAGAGAGG...GGTAGAAGCTACCCCACCTGTAAGGACCCTCCCCCACTCACAGCCCTCCAGCAG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 5 transcripts:
ENSMUST00000004985.11
ENSMUST00000156029.8
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
CDS-3UTR GCA 90 bp GGGAGGGTCCTTACAGGTGGGGTAGCTTCTACCTGGGACTCAAGCGCCTGGCAGCCTCTCTCCAGCCTCTaGCTGCTTCTGCTCGCCCAG +
Preference number: 4 (lower is better)
Translates to: GRVLTGGVASTWDSSAWQPLSSL*LLLLAQ
Trigger: CTGGGCGAGCAGAAGCAGGCAGAGGCTGGAGAGAGG...CTGCCAGGCGCTTGAGTCCCAGGTAGAAGCTACCCCACCTGTAAGGACCCTCCC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000004985.11
ENSMUST00000156029.8
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
CDS-3UTR CCA 90 bp TTGCCCTCGGAGACCCAGTCCAGTCAGGGCCTGCCATTAGAAAGAAGCTGCCGGCTGGGCTGGGGGAGGTaGAAGGAGGTACCGGACGCA +
Preference number: 4 (lower is better)
Translates to: LPSETQSSQGLPLERSCRLGWGR*KEVPDA
Trigger: TGCGTCCGGTACCTCCTTCCACCTCCCCCAGCCCAG...CCGGCAGCTTCTTTCTAATGGCAGGCCCTGACTGGACTGGGTCTCCGAGGGCAA
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 7 transcripts:
ENSMUST00000004985.11
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR CCA 90 bp TGGGGGAAGGGAAGCTCTGAGGGTTCCCGAGGGACCCTGGCACATCTCTGGGATCCACCACACGAAAGCTaGGCTGGGGGAGGTGGAAGG +
Preference number: 4 (lower is better)
Translates to: WGKGSSEGSRGTLAHLWDPPHES*AGGGGR
Trigger: CCTTCCACCTCCCCCAGCCCAGCTTTCGTGTGGTGG...ATCCCAGAGATGTGCCAGGGTCCCTCGGGAACCCTCAGAGCTTCCCTTCCCCCA
63% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 7 transcripts:
ENSMUST00000004985.11
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR CCA 90 bp GAAGCTGCCGGCCATACACGTGGCAGGGGCAGCAGAGGTTCTCATGCCTCAGGGATGGCGCAGACTACGTaGGCCCAGTGGCCATCACTG +
Preference number: 4 (lower is better)
Translates to: EAAGHTRGRGSRGSHASGMAQTT*AQWPSL
Trigger: CAGTGATGGCCACTGGGCCCACGTAGTCTGCGCCAT...CCCTGAGGCATGAGAACCTCTGCTGCCCCTGCCACGTGTATGGCCGGCAGCTTC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000004985.11
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR CCA 90 bp CACCCGCCACCCGCCACCCGCCGCCCGTGCCGCGGTGATCATGCTGATGCAGTGGAATTCCAGGTAATCTaGAACCTCACTCAGGCTGAC +
Preference number: 4 (lower is better)
Translates to: HPPPATRRPCRGDHADAVEFQVI*NLTQAD
Trigger: GTCAGCCTGAGTGAGGTTCCAGATTACCTGGAATTC...CACTGCATCAGCATGATCACCGCGGCACGGGCGGCGGGTGGCGGGTGGCGGGTG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000004985.11
ENSMUST00000156029.8
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233709.2
CDS-3UTR CCA 90 bp CACCCGCCACCCGCCACCCGCCGCCCGTGCCGCGGTGATCATGCTGATGCAGTGCGGACAGCTGCTCGGTaGAAAATTGTGTCTTTAGCA +
Preference number: 4 (lower is better)
Translates to: HPPPATRRPCRGDHADAVRTAAR*KIVSLA
Trigger: TGCTAAAGACACAATTTTCCACCGAGCAGCTGTCCG...CACTGCATCAGCATGATCACCGCGGCACGGGCGGCGGGTGGCGGGTGGCGGGTG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000004985.11
ENSMUST00000156029.8
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233709.2
CDS-3UTR CCA 90 bp CCTTCTAGCATCTTGAGCTTGTCCACAGTGTCCTCCACACCCAGGGGCAGGACTGGGTGCGGGCCCCGCTaGACCGCATGGTGCTCACCA +
Preference number: 4 (lower is better)
Translates to: PSSILSLSTVSSTPRGRTGCGPR*TAWCSP
Trigger: TGGTGAGCACCATGCGGTCCAGCGGGGCCCGCACCC...AGTCCTGCCCCTGGGTGTGGAGGACACTGTGGACAAGCTCAAGATGCTAGAAGG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000156029.8
ENSMUST00000233701.2
CDS-3UTR CCA 90 bp TTGGGTCTTGCCCTCGGAGACCCAGTCCAGTCAGGGCCTGCCATTAGAAAGAAGGGGTGCGGGCCCCGCTaGACCGCATGGTGCTCACCA +
Preference number: 4 (lower is better)
Translates to: LGLALGDPVQSGPAIRKKGCGPR*TAWCSP
Trigger: TGGTGAGCACCATGCGGTCCAGCGGGGCCCGCACCC...CTTCTTTCTAATGGCAGGCCCTGACTGGACTGGGTCTCCGAGGGCAAGACCCAA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000004985.11
ENSMUST00000156029.8
ENSMUST00000233701.2
CDS-3UTR CCA 90 bp CTTGCCCTCGGAGACCCAGTCCAGTCAGGGCCTGCCATTAGAAAGAAGCTGCCGTCCCACGGCTGCGTTTaGGAGGCGTCAGGCCACTGC +
Preference number: 4 (lower is better)
Translates to: LALGDPVQSGPAIRKKLPSHGCV*EASGHC
Trigger: GCAGTGGCCTGACGCCTCCCAAACGCAGCCGTGGGA...CGGCAGCTTCTTTCTAATGGCAGGCCCTGACTGGACTGGGTCTCCGAGGGCAAG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000004985.11
ENSMUST00000156029.8
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR TCA 90 bp AGGGTCACAGAGTCCACAGCTGACCAGCTACCTGGGGATAGGGGGACGTGTCGGCTCGGCATTCTGCCGTaGCTTTCGGCGAGGCTTCCT +
Preference number: 4 (lower is better)
Translates to: RVTESTADQLPGDRGTCRLGILP*LSARLP
Trigger: AGGAAGCCTCGCCGAAAGTCACGGCAGAATGCCGAG...CCGACACGTCCCCCTATCCCCAGGTAGCTGGTCAGCTGTGGACTCTGTGACCCT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000004985.11
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233709.2
CDS-3UTR TCA 90 bp GCATGCGGACACGACGGGTGCGGGCCCCGCTGGACCGCATGGTGCTCACCAGATAACTGGGTCTTCCTCTaGAAGGAGAGACCACTACAG +
Preference number: 4 (lower is better)
Translates to: ACGHDGCGPRWTAWCSPDNWVFL*KERPLQ
Trigger: CTGTAGTGGTCTCTCCTTTCAGAGGAAGACCCAGTT...ATCTGGTGAGCACCATGCGGTCCAGCGGGGCCCGCACCCGTCGTGTCCGCATGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000232705.2
ENSMUST00000232997.2
CDS-3UTR GCA 90 bp CTGCCATTAGAAAGAAGCTGCCGGCCATACACGTGGCAGGGGCAGCAGAGGTTCCGGCCCTCGGCATTCTaGCGTGACTTTCGGCGAGGC +
Preference number: 4 (lower is better)
Translates to: LPLERSCRPYTWQGQQRFRPSAF*RDFRRG
Trigger: GCCTCGCCGAAAGTCACGGCAGAATGCCGAGGGCCG...GAACCTCTGCTGCCCCTGCCACGTGTATGGCCGGCAGCTTCTTTCTAATGGCAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000004985.11
ENSMUST00000232705.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR GCA 90 bp TCCCGAGGGACCCTGGCACATCTCTGGGATCAATGTCAGAACCTTGCCTGCCCTACTGCTGGGCCCCACTaGTGCGGCTCTCCAGGTAGG +
Preference number: 4 (lower is better)
Translates to: SRGTLAHLWDQCQNLACPTAGPH*CGSPGR
Trigger: CCTACCTGGAGAGCCGCAGCAGTGGGGCCCAGCAGT...AGGGCAGGCAAGGTTCTGACATTGATCCCAGAGATGTGCCAGGGTCCCTCGGGA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000004985.11
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR GCA 90 bp GAGGGACCCTGGCACATCTCTGGGATCAATGTCAGAACCTTGCCTGCCCTGAGGACTGCTGGGCCCCACTaGTGCGGCTCTCCAGGTAGG +
Preference number: 4 (lower is better)
Translates to: EGPWHISGINVRTLPALRTAGPH*CGSPGR
Trigger: CCTACCTGGAGAGCCGCAGCAGTGGGGCCCAGCAGT...CCTCAGGGCAGGCAAGGTTCTGACATTGATCCCAGAGATGTGCCAGGGTCCCTC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000004985.11
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR GCA 90 bp GGAAGGGAAGCTCTGAGGGTTCCCGAGGGACCCTGGCACATCTCTGGGATCAATCTGGCTTCCCACGGCTaGGTTTGGGAGGCGTCAGGC +
Preference number: 4 (lower is better)
Translates to: GREALRVPEGPWHISGINLASHG*VWEASG
Trigger: GCCTGACGCCTCCCAAACGCAGCCGTGGGAAGCCAG...ATTGATCCCAGAGATGTGCCAGGGTCCCTCGGGAACCCTCAGAGCTTCCCTTCC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000004985.11
ENSMUST00000156029.8
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR GCA 90 bp CTTGCCCTCGGAGACCCAGTCCAGTCAGGGCCTGCCATTAGAAAGAAGCTGCCGGCCTCTGCCTGCTTCTaGTCGCCCAGCTTCAGCACG +
Preference number: 4 (lower is better)
Translates to: LALGDPVQSGPAIRKKLPASACF*SPSFST
Trigger: CGTGCTGAAGCTGGGCGAGCAGAAGCAGGCAGAGGC...CGGCAGCTTCTTTCTAATGGCAGGCCCTGACTGGACTGGGTCTCCGAGGGCAAG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000004985.11
ENSMUST00000140587.9
ENSMUST00000156029.8
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
CDS-3UTR GCA 90 bp TCAGGGCCTGCCATTAGAAAGAAGCTGCCGGCCATACACGTGGCAGGGGCAGCAGCCTCTGCCTGCTTCTaGTCGCCCAGCTTCAGCACG +
Preference number: 4 (lower is better)
Translates to: SGPAIRKKLPAIHVAGAAASACF*SPSFST
Trigger: CGTGCTGAAGCTGGGCGAGCAGAAGCAGGCAGAGGC...TGCTGCCCCTGCCACGTGTATGGCCGGCAGCTTCTTTCTAATGGCAGGCCCTGA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000004985.11
ENSMUST00000140587.9
ENSMUST00000156029.8
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
CDS-3UTR GCA 90 bp CAGAGGAGAGGCAAAGAAGGCAGACACAGGCCCAGCTCGGCTCTCACAGGTAGCGCCTCTGCCTGCTTCTaGTCGCCCAGCTTCAGCACG +
Preference number: 4 (lower is better)
Translates to: QRRGKEGRHRPSSALTGSASACF*SPSFST
Trigger: CGTGCTGAAGCTGGGCGAGCAGAAGCAGGCAGAGGC...GCTACCTGTGAGAGCCGAGCTGGGCCTGTGTCTGCCTTCTTTGCCTCTCCTCTG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000156029.8
ENSMUST00000233701.2
CDS-3UTR GCA 90 bp AGGGTCACAGAGTCCACAGCTGACCAGCTACCTGGGGATAGGGGGACGTGTCGGTCTCCAGCCTCTGCCTaGTTCTGCTCGCCCAGCTTC +
Preference number: 4 (lower is better)
Translates to: RVTESTADQLPGDRGTCRSPASA*FCSPSF
Trigger: GAAGCTGGGCGAGCAGAAGCAGGCAGAGGCTGGAGA...CCGACACGTCCCCCTATCCCCAGGTAGCTGGTCAGCTGTGGACTCTGTGACCCT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000004985.11
ENSMUST00000156029.8
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
CDS-3UTR GCA 90 bp ACGTGGCAGGGGCAGCAGAGGTTCTCATGCCTCAGGGACAGAGGAGAGGCAAAGCCTCTCTCCAGCCTCTaGCTGCTTCTGCTCGCCCAG +
Preference number: 4 (lower is better)
Translates to: TWQGQQRFSCLRDRGEAKPLSSL*LLLLAQ
Trigger: CTGGGCGAGCAGAAGCAGGCAGAGGCTGGAGAGAGG...CTTTGCCTCTCCTCTGTCCCTGAGGCATGAGAACCTCTGCTGCCCCTGCCACGT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000004985.11
ENSMUST00000140587.9
ENSMUST00000156029.8
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
CDS-3UTR CCA 90 bp CAGGGCCTGCCATTAGAAAGAAGCTGCCGGCCATACACGTGGCAGGGGCAGCAGAAGACTGTATGGGGATaGGGATCTCCGGCCCTCGGC +
Preference number: 4 (lower is better)
Translates to: QGLPLERSCRPYTWQGQQKTVWG*GSPALG
Trigger: GCCGAGGGCCGGAGATCCCCATCCCCATACAGTCTT...CTGCTGCCCCTGCCACGTGTATGGCCGGCAGCTTCTTTCTAATGGCAGGCCCTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000004985.11
ENSMUST00000232705.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR CCA 90 bp GTCCAGTCAGGGCCTGCCATTAGAAAGAAGCTGCCGGCCATACACGTGGCAGGGCCACCACACGAAAGCTaGGCTGGGGGAGGTGGAAGG +
Preference number: 4 (lower is better)
Translates to: VQSGPAIRKKLPAIHVAGPPHES*AGGGGR
Trigger: CCTTCCACCTCCCCCAGCCCAGCTTTCGTGTGGTGG...CCCTGCCACGTGTATGGCCGGCAGCTTCTTTCTAATGGCAGGCCCTGACTGGAC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 7 transcripts:
ENSMUST00000004985.11
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR CCA 90 bp TGGGGGAGGGTCCTTACAGGTGGGGTAGCTTCTACCTGGGACTCAAGCGCCTGGGTAAGCAGCAGGCAATaGGGGCGCTTCTGGCTGGCT +
Preference number: 4 (lower is better)
Translates to: WGRVLTGGVASTWDSSAWVSSRQ*GRFWLA
Trigger: AGCCAGCCAGAAGCGCCCCCATTGCCTGCTGCTTAC...CCAGGCGCTTGAGTCCCAGGTAGAAGCTACCCCACCTGTAAGGACCCTCCCCCA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 7 transcripts:
ENSMUST00000004985.11
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR CCA 90 bp CAGGGCCTGCCATTAGAAAGAAGCTGCCGGCCATACACGTGGCAGGGGCAGCAGGTAAGCAGCAGGCAATaGGGGCGCTTCTGGCTGGCT +
Preference number: 4 (lower is better)
Translates to: QGLPLERSCRPYTWQGQQVSSRQ*GRFWLA
Trigger: AGCCAGCCAGAAGCGCCCCCATTGCCTGCTGCTTAC...CTGCTGCCCCTGCCACGTGTATGGCCGGCAGCTTCTTTCTAATGGCAGGCCCTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000004985.11
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR CCA 90 bp TGGGGGAAGGGAAGCTCTGAGGGTTCCCGAGGGACCCTGGCACATCTCTGGGATGCCTCTGGGGACAGATaGGCCCGGTTCTCTGGGATA +
Preference number: 4 (lower is better)
Translates to: WGKGSSEGSRGTLAHLWDASGDR*ARFSGI
Trigger: TATCCCAGAGAACCGGGCCCATCTGTCCCCAGAGGC...ATCCCAGAGATGTGCCAGGGTCCCTCGGGAACCCTCAGAGCTTCCCTTCCCCCA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000004985.11
ENSMUST00000156029.8
ENSMUST00000233701.2
CDS-3UTR CCA 90 bp AGGGTCACAGAGTCCACAGCTGACCAGCTACCTGGGGATAGGGGGACGTGTCGGGTGGAGGGACAGGGATaGGGACACCGTTGTGCAGGA +
Preference number: 4 (lower is better)
Translates to: RVTESTADQLPGDRGTCRVEGQG*GHRCAG
Trigger: TCCTGCACAACGGTGTCCCCATCCCTGTCCCTCCAC...CCGACACGTCCCCCTATCCCCAGGTAGCTGGTCAGCTGTGGACTCTGTGACCCT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000004985.11
ENSMUST00000156029.8
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
CDS-3UTR CCA 90 bp GAAGCTGCCGGCCATACACGTGGCAGGGGCAGCAGAGGTTCTCATGCCTCAGGGGGCTCAGGTGGATCATaGCGCGGTCATAGGCCACTT +
Preference number: 4 (lower is better)
Translates to: EAAGHTRGRGSRGSHASGGSGGS*RGHRPL
Trigger: AAGTGGCCTATGACCGCGCCATGATCCACCTGAGCC...CCCTGAGGCATGAGAACCTCTGCTGCCCCTGCCACGTGTATGGCCGGCAGCTTC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000004985.11
ENSMUST00000140587.9
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
3UTR CAA 72 bp CGAGATCCTGCTGGCAGCTCCCCGTTGGGCACAGTCTaGTTCAGTGACAGGAGCTGTGGTGGCGGTGGCTGT +
Preference number: 4 (lower is better)
Translates to: RDPAGSSPLGTV*FSDRSCGGGGC
Trigger: ACAGCCACCGCCACCACAGCTCCTGTCACTGAACAAGACTGTGCCCAACGGGGAGCTGCCAGCAGGATCTCG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000232705.2
ENSMUST00000232997.2
CDS-3UTR TCA 90 bp AGGGTCACAGAGTCCACAGCTGACCAGCTACCTGGGGATAGGGGGACGTGTCGGTTTGCCGAAGGGCATTaGTCTCCCTGCGCAGCATGC +
Preference number: 4 (lower is better)
Translates to: RVTESTADQLPGDRGTCRFAEGH*SPCAAC
Trigger: GCATGCTGCGCAGGGAGATCAATGCCCTTCGGCAAA...CCGACACGTCCCCCTATCCCCAGGTAGCTGGTCAGCTGTGGACTCTGTGACCCT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000004985.11
ENSMUST00000156029.8
CDS-3UTR GCA 90 bp GGGCGGTGTGGGGGAAGGGAAGCTCTGAGGGTTCCCGAGGGACCCTGGCACATCGCAGGGAATTGGGGCTaGTCACTGTTTTCCTTGTTG +
Preference number: 4 (lower is better)
Translates to: GRCGGREALRVPEGPWHIAGNWG*SLFSLL
Trigger: CAACAAGGAAAACAGTGAGCAGCCCCAATTCCCTGC...GATGTGCCAGGGTCCCTCGGGAACCCTCAGAGCTTCCCTTCCCCCACACCGCCC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 7 transcripts:
ENSMUST00000004985.11
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR GCA 90 bp GGGACTCAAGCGCCTGGCAGACATCCATCTAATGTAGCAGCTGGCCAGGAAGGAACTGCTGGGCCCCACTaGTGCGGCTCTCCAGGTAGG +
Preference number: 4 (lower is better)
Translates to: GTQAPGRHPSNVAAGQEGTAGPH*CGSPGR
Trigger: CCTACCTGGAGAGCCGCAGCAGTGGGGCCCAGCAGT...TCCTTCCTGGCCAGCTGCTACATTAGATGGATGTCTGCCAGGCGCTTGAGTCCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000004985.11
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR GCA 90 bp GGTCTTGCCCTCGGAGACCCAGTCCAGTCAGGGCCTGCCATTAGAAAGAAGCTGTCGTCGATTAGGGACTaGTGGGCCCCACTGCTGCGG +
Preference number: 4 (lower is better)
Translates to: GLALGDPVQSGPAIRKKLSSIRD*WAPLLR
Trigger: CCGCAGCAGTGGGGCCCAGCAGTCCCTAATCGACGA...CAGCTTCTTTCTAATGGCAGGCCCTGACTGGACTGGGTCTCCGAGGGCAAGACC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000004985.11
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR GCA 90 bp GAAAGAAGCTGCCGGCCATACACGTGGCAGGGGCAGCAGAGGTTCTCATGCCTCGGACGAGAGGGAGACTaGAGGCAGCAGCGACATAGC +
Preference number: 4 (lower is better)
Translates to: ERSCRPYTWQGQQRFSCLGREGD*RQQRHS
Trigger: GCTATGTCGCTGCTGCCTGCAGTCTCCCTCTCGTCC...GAGGCATGAGAACCTCTGCTGCCCCTGCCACGTGTATGGCCGGCAGCTTCTTTC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000004985.11
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR GCA 90 bp TGCCGCGGTGATCATGCTGATGCAGTGAGGCTTATGGCTGCTGCAGGAGGGGAGGGACGAGAGGGAGACTaGAGGCAGCAGCGACATAGC +
Preference number: 4 (lower is better)
Translates to: CRGDHADAVRLMAAAGGEGREGD*RQQRHS
Trigger: GCTATGTCGCTGCTGCCTGCAGTCTCCCTCTCGTCC...CTCCCCTCCTGCAGCAGCCATAAGCCTCACTGCATCAGCATGATCACCGCGGCA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000004985.11
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233709.2
CDS-3UTR GCA 90 bp ACGTGGCAGGGGCAGCAGAGGTTCTCATGCCTCAGGGACAGAGGAGAGGCAAAGGGACGAGAGGGAGACTaGAGGCAGCAGCGACATAGC +
Preference number: 4 (lower is better)
Translates to: TWQGQQRFSCLRDRGEAKGREGD*RQQRHS
Trigger: GCTATGTCGCTGCTGCCTGCAGTCTCCCTCTCGTCC...CTTTGCCTCTCCTCTGTCCCTGAGGCATGAGAACCTCTGCTGCCCCTGCCACGT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000004985.11
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR GCA 90 bp GGCTGTGCTGTTTGCTGGACAGAACCTGGCCCTCTTGGTGAGTTTTGTTGGTTCCCGATGTTCTCTGCCTaGCGCCGGGCGTGCCGCAGG +
Preference number: 4 (lower is better)
Translates to: GCAVCWTEPGPLGEFCWFPMFSA*RRACRR
Trigger: CCTGCGGCACGCCCGGCGGCAGGCAGAGAACATCGG...GAACCAACAAAACTCACCAAGAGGGCCAGGTTCTGTCCAGCAAACAGCACAGCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000004985.11
ENSMUST00000156029.8
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233709.2
CDS-3UTR GCA 90 bp CAACATGGCAATTGGCGGTCTGCAAACCCGCCTGCGGCTTTGGTGCTTAAAGAACCGATGTTCTCTGCCTaGCGCCGGGCGTGCCGCAGG +
Preference number: 4 (lower is better)
Translates to: QHGNWRSANPPAALVLKEPMFSA*RRACRR
Trigger: CCTGCGGCACGCCCGGCGGCAGGCAGAGAACATCGG...TTCTTTAAGCACCAAAGCCGCAGGCGGGTTTGCAGACCGCCAATTGCCATGTTG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000004985.11
ENSMUST00000156029.8
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233709.2
CDS-3UTR GCA 90 bp GGGAACCACATGATTGGTCAATATTGGGTCTTGCCCTCGGAGACCCAGTCCAGTCCGATGTTCTCTGCCTaGCGCCGGGCGTGCCGCAGG +
Preference number: 4 (lower is better)
Translates to: GNHMIGQYWVLPSETQSSPMFSA*RRACRR
Trigger: CCTGCGGCACGCCCGGCGGCAGGCAGAGAACATCGG...ACTGGACTGGGTCTCCGAGGGCAAGACCCAATATTGACCAATCATGTGGTTCCC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000004985.11
ENSMUST00000156029.8
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR GCA 90 bp ATGATTGGTCAATATTGGGTCTTGCCCTCGGAGACCCAGTCCAGTCAGGGCCTGTCTCCCTGCGCAGCATaGGGACACGACGGGTGCGGG +
Preference number: 4 (lower is better)
Translates to: MIGQYWVLPSETQSSQGLSPCAA*GHDGCG
Trigger: CCCGCACCCGTCGTGTCCGCATGCTGCGCAGGGAGA...CAGGCCCTGACTGGACTGGGTCTCCGAGGGCAAGACCCAATATTGACCAATCAT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000004985.11
ENSMUST00000156029.8
ENSMUST00000233701.2
CDS-3UTR GCA 90 bp GCGCCTGGCAGACATCCATCTAATGTAGCAGCTGGCCAGGAAGGAAATGGGACAATGGGGACACCGTTGTaGAGGAGGCCCTCCCGGGGC +
Preference number: 4 (lower is better)
Translates to: APGRHPSNVAAGQEGNGTMGTPL*RRPSRG
Trigger: GCCCCGGGAGGGCCTCCTGCACAACGGTGTCCCCAT...TGTCCCATTTCCTTCCTGGCCAGCTGCTACATTAGATGGATGTCTGCCAGGCGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000004985.11
ENSMUST00000156029.8
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
CDS-3UTR GCA 90 bp AGAAAGAAGCTGCCGGCCATACACGTGGCAGGGGCAGCAGAGGTTCTCATGCCTCCTCTCTCCAGCCTCTaGCTGCTTCTGCTCGCCCAG +
Preference number: 4 (lower is better)
Translates to: RKKLPAIHVAGAAEVLMPPLSSL*LLLLAQ
Trigger: CTGGGCGAGCAGAAGCAGGCAGAGGCTGGAGAGAGG...AGGCATGAGAACCTCTGCTGCCCCTGCCACGTGTATGGCCGGCAGCTTCTTTCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000004985.11
ENSMUST00000140587.9
ENSMUST00000156029.8
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
CDS-3UTR GCA 90 bp GCAAAGAAGGCAGACACAGGCCCAGCTCGGCTCTCACAGGTAGCTGGAAGTGACCCTCTCTCCAGCCTCTaGCTGCTTCTGCTCGCCCAG +
Preference number: 4 (lower is better)
Translates to: AKKADTGPARLSQVAGSDPLSSL*LLLLAQ
Trigger: CTGGGCGAGCAGAAGCAGGCAGAGGCTGGAGAGAGG...GTCACTTCCAGCTACCTGTGAGAGCCGAGCTGGGCCTGTGTCTGCCTTCTTTGC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000156029.8
ENSMUST00000233701.2
CDS-3UTR GCA 90 bp CCTGCCATTAGAAAGAAGCTGCCGGCCATACACGTGGCAGGGGCAGCAGAGGTTCCTCTCTCCAGCCTCTaGCTGCTTCTGCTCGCCCAG +
Preference number: 4 (lower is better)
Translates to: PAIRKKLPAIHVAGAAEVPLSSL*LLLLAQ
Trigger: CTGGGCGAGCAGAAGCAGGCAGAGGCTGGAGAGAGG...AACCTCTGCTGCCCCTGCCACGTGTATGGCCGGCAGCTTCTTTCTAATGGCAGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000004985.11
ENSMUST00000140587.9
ENSMUST00000156029.8
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
CDS-3UTR CCA 90 bp GGTCAATATTGGGTCTTGCCCTCGGAGACCCAGTCCAGTCAGGGCCTGCCATTACTGGGCTGGGGGAGGTaGAAGGAGGTACCGGACGCA +
Preference number: 4 (lower is better)
Translates to: GQYWVLPSETQSSQGLPLLGWGR*KEVPDA
Trigger: TGCGTCCGGTACCTCCTTCCACCTCCCCCAGCCCAG...TAATGGCAGGCCCTGACTGGACTGGGTCTCCGAGGGCAAGACCCAATATTGACC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 7 transcripts:
ENSMUST00000004985.11
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR CCA 90 bp AAGGGAAGCTCTGAGGGTTCCCGAGGGACCCTGGCACATCTCTGGGATCAATGTCTGGGCTGGGGGAGGTaGAAGGAGGTACCGGACGCA +
Preference number: 4 (lower is better)
Translates to: KGSSEGSRGTLAHLWDQCLGWGR*KEVPDA
Trigger: TGCGTCCGGTACCTCCTTCCACCTCCCCCAGCCCAG...ACATTGATCCCAGAGATGTGCCAGGGTCCCTCGGGAACCCTCAGAGCTTCCCTT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 7 transcripts:
ENSMUST00000004985.11
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR CCA 90 bp AGGGTCACAGAGTCCACAGCTGACCAGCTACCTGGGGATAGGGGGACGTGTCGGACACGAAAGCTGGGCTaGGGGAGGTGGAAGGAGGTA +
Preference number: 4 (lower is better)
Translates to: RVTESTADQLPGDRGTCRTRKLG*GRWKEV
Trigger: TACCTCCTTCCACCTCCCCCAGCCCAGCTTTCGTGT...CCGACACGTCCCCCTATCCCCAGGTAGCTGGTCAGCTGTGGACTCTGTGACCCT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 5 transcripts:
ENSMUST00000004985.11
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233709.2
CDS-3UTR CCA 90 bp TGGGGGAGGGTCCTTACAGGTGGGGTAGCTTCTACCTGGGACTCAAGCGCCTGGACACGAAAGCTGGGCTaGGGGAGGTGGAAGGAGGTA +
Preference number: 4 (lower is better)
Translates to: WGRVLTGGVASTWDSSAWTRKLG*GRWKEV
Trigger: TACCTCCTTCCACCTCCCCCAGCCCAGCTTTCGTGT...CCAGGCGCTTGAGTCCCAGGTAGAAGCTACCCCACCTGTAAGGACCCTCCCCCA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 7 transcripts:
ENSMUST00000004985.11
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR CCA 90 bp GTCTTGCCCTCGGAGACCCAGTCCAGTCAGGGCCTGCCATTAGAAAGAAGCTGCCCACCACACGAAAGCTaGGCTGGGGGAGGTGGAAGG +
Preference number: 4 (lower is better)
Translates to: VLPSETQSSQGLPLERSCPPHES*AGGGGR
Trigger: CCTTCCACCTCCCCCAGCCCAGCTTTCGTGTGGTGG...GCAGCTTCTTTCTAATGGCAGGCCCTGACTGGACTGGGTCTCCGAGGGCAAGAC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 7 transcripts:
ENSMUST00000004985.11
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR CCA 90 bp CTGCCATTAGAAAGAAGCTGCCGGCCATACACGTGGCAGGGGCAGCAGAGGTTCCCACCACACGAAAGCTaGGCTGGGGGAGGTGGAAGG +
Preference number: 4 (lower is better)
Translates to: LPLERSCRPYTWQGQQRFPPHES*AGGGGR
Trigger: CCTTCCACCTCCCCCAGCCCAGCTTTCGTGTGGTGG...GAACCTCTGCTGCCCCTGCCACGTGTATGGCCGGCAGCTTCTTTCTAATGGCAG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 7 transcripts:
ENSMUST00000004985.11
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR CCA 90 bp CTTGCCCTCGGAGACCCAGTCCAGTCAGGGCCTGCCATTAGAAAGAAGCTGCCGGTAAGCAGCAGGCAATaGGGGCGCTTCTGGCTGGCT +
Preference number: 4 (lower is better)
Translates to: LALGDPVQSGPAIRKKLPVSSRQ*GRFWLA
Trigger: AGCCAGCCAGAAGCGCCCCCATTGCCTGCTGCTTAC...CGGCAGCTTCTTTCTAATGGCAGGCCCTGACTGGACTGGGTCTCCGAGGGCAAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000004985.11
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR CCA 90 bp GGAGAGGCAAAGAAGGCAGACACAGGCCCAGCTCGGCTCTCACAGGTAGCTGGAGTAAGCAGCAGGCAATaGGGGCGCTTCTGGCTGGCT +
Preference number: 4 (lower is better)
Translates to: GEAKKADTGPARLSQVAGVSSRQ*GRFWLA
Trigger: AGCCAGCCAGAAGCGCCCCCATTGCCTGCTGCTTAC...TCCAGCTACCTGTGAGAGCCGAGCTGGGCCTGTGTCTGCCTTCTTTGCCTCTCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR CCA 90 bp TCCCGAGGGACCCTGGCACATCTCTGGGATCAATGTCAGAACCTTGCCTGCCCTTCGATTAGGGACTGCTaGGCCCCACTGCTGCGGCTC +
Preference number: 4 (lower is better)
Translates to: SRGTLAHLWDQCQNLACPSIRDC*APLLRL
Trigger: GAGCCGCAGCAGTGGGGCCCAGCAGTCCCTAATCGA...AGGGCAGGCAAGGTTCTGACATTGATCCCAGAGATGTGCCAGGGTCCCTCGGGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000004985.11
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR CCA 90 bp GGTCTTGCCCTCGGAGACCCAGTCCAGTCAGGGCCTGCCATTAGAAAGAAGCTGTCGATTAGGGACTGCTaGGCCCCACTGCTGCGGCTC +
Preference number: 4 (lower is better)
Translates to: GLALGDPVQSGPAIRKKLSIRDC*APLLRL
Trigger: GAGCCGCAGCAGTGGGGCCCAGCAGTCCCTAATCGA...CAGCTTCTTTCTAATGGCAGGCCCTGACTGGACTGGGTCTCCGAGGGCAAGACC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000004985.11
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR CCA 90 bp GGGGGAAGGGAAGCTCTGAGGGTTCCCGAGGGACCCTGGCACATCTCTGGGATCACTACGTGGGCCCAGTaGCCATCACTGGTCTGTTTG +
Preference number: 4 (lower is better)
Translates to: GGREALRVPEGPWHISGITTWAQ*PSLVCL
Trigger: CAAACAGACCAGTGATGGCCACTGGGCCCACGTAGT...GATCCCAGAGATGTGCCAGGGTCCCTCGGGAACCCTCAGAGCTTCCCTTCCCCC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 7 transcripts:
ENSMUST00000004985.11
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR CCA 90 bp TTGCCCTCGGAGACCCAGTCCAGTCAGGGCCTGCCATTAGAAAGAAGCTGCCGGATGGCGCAGACTACGTaGGCCCAGTGGCCATCACTG +
Preference number: 4 (lower is better)
Translates to: LPSETQSSQGLPLERSCRMAQTT*AQWPSL
Trigger: CAGTGATGGCCACTGGGCCCACGTAGTCTGCGCCAT...CCGGCAGCTTCTTTCTAATGGCAGGCCCTGACTGGACTGGGTCTCCGAGGGCAA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000004985.11
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR CCA 90 bp CTGCCATTAGAAAGAAGCTGCCGGCCATACACGTGGCAGGGGCAGCAGAGGTTCCCTCAGGGATCCAGATaGCGCAGACTACGTGGGCCC +
Preference number: 4 (lower is better)
Translates to: LPLERSCRPYTWQGQQRFPQGSR*RRLRGP
Trigger: GGGCCCACGTAGTCTGCGCCATCTGGATCCCTGAGG...GAACCTCTGCTGCCCCTGCCACGTGTATGGCCGGCAGCTTCTTTCTAATGGCAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000004985.11
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR CCA 90 bp TTGCCCTCGGAGACCCAGTCCAGTCAGGGCCTGCCATTAGAAAGAAGCTGCCGGCTTCCAGCGGGCGGGTaGAATGTTGTCGATGCCCTC +
Preference number: 4 (lower is better)
Translates to: LPSETQSSQGLPLERSCRLPAGG*NVVDAL
Trigger: GAGGGCATCGACAACATTCCACCCGCCCGCTGGAAG...CCGGCAGCTTCTTTCTAATGGCAGGCCCTGACTGGACTGGGTCTCCGAGGGCAA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000004985.11
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR CCA 90 bp GAAAGAAGCTGCCGGCCATACACGTGGCAGGGGCAGCAGAGGTTCTCATGCCTCCTTCCAGCGGGCGGGTaGAATGTTGTCGATGCCCTC +
Preference number: 4 (lower is better)
Translates to: ERSCRPYTWQGQQRFSCLLPAGG*NVVDAL
Trigger: GAGGGCATCGACAACATTCCACCCGCCCGCTGGAAG...GAGGCATGAGAACCTCTGCTGCCCCTGCCACGTGTATGGCCGGCAGCTTCTTTC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000004985.11
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR CCA 90 bp TGCCGCGGTGATCATGCTGATGCAGTGAGGCTTATGGCTGCTGCAGGAGGGGAGCCCCGCTGGACCGCATaGTGCTCACCAGATCCAGTT +
Preference number: 4 (lower is better)
Translates to: CRGDHADAVRLMAAAGGEPRWTA*CSPDPV
Trigger: AACTGGATCTGGTGAGCACCATGCGGTCCAGCGGGG...CTCCCCTCCTGCAGCAGCCATAAGCCTCACTGCATCAGCATGATCACCGCGGCA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000004985.11
ENSMUST00000156029.8
CDS-3UTR CCA 90 bp TTGCCCTCGGAGACCCAGTCCAGTCAGGGCCTGCCATTAGAAAGAAGCTGCCGGCACACGAGACAGGGCTaGCTTCCCACGGCTGCGTTT +
Preference number: 4 (lower is better)
Translates to: LPSETQSSQGLPLERSCRHTRQG*LPTAAF
Trigger: AAACGCAGCCGTGGGAAGCCAGCCCTGTCTCGTGTG...CCGGCAGCTTCTTTCTAATGGCAGGCCCTGACTGGACTGGGTCTCCGAGGGCAA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000004985.11
ENSMUST00000156029.8
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR CCA 90 bp GAAAGAAGCTGCCGGCCATACACGTGGCAGGGGCAGCAGAGGTTCTCATGCCTCGTGGAGGGACAGGGATaGGGACACCGTTGTGCAGGA +
Preference number: 4 (lower is better)
Translates to: ERSCRPYTWQGQQRFSCLVEGQG*GHRCAG
Trigger: TCCTGCACAACGGTGTCCCCATCCCTGTCCCTCCAC...GAGGCATGAGAACCTCTGCTGCCCCTGCCACGTGTATGGCCGGCAGCTTCTTTC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000004985.11
ENSMUST00000140587.9
ENSMUST00000156029.8
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
CDS-3UTR CCA 90 bp GAGGGTCCTTACAGGTGGGGTAGCTTCTACCTGGGACTCAAGCGCCTGGCAGACGTGGAGGGACAGGGATaGGGACACCGTTGTGCAGGA +
Preference number: 4 (lower is better)
Translates to: EGPYRWGSFYLGLKRLADVEGQG*GHRCAG
Trigger: TCCTGCACAACGGTGTCCCCATCCCTGTCCCTCCAC...GTCTGCCAGGCGCTTGAGTCCCAGGTAGAAGCTACCCCACCTGTAAGGACCCTC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000004985.11
ENSMUST00000156029.8
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
CDS-3UTR CCA 90 bp GAAGCTGCCGGCCATACACGTGGCAGGGGCAGCAGAGGTTCTCATGCCTCAGGGCTGACTTCCGGATGCTaGTCTTGCGGCCTTCTAGCA +
Preference number: 4 (lower is better)
Translates to: EAAGHTRGRGSRGSHASGLTSGC*SCGLLA
Trigger: TGCTAGAAGGCCGCAAGACCAGCATCCGGAAGTCAG...CCCTGAGGCATGAGAACCTCTGCTGCCCCTGCCACGTGTATGGCCGGCAGCTTC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000004985.11
ENSMUST00000140587.9
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
3UTR CAA 72 bp GGACCCCTCTGTAGCTTAACTCCATTCTTGGCCTTCTaGAAGAGGACGGAGGTTCGGCGGCCCACGGTGCCG +
Preference number: 4 (lower is better)
Translates to: GPLCSLTPFLAF*KRTEVRRPTVP
Trigger: CGGCACCGTGGGCCGCCGAACCTCCGTCCTCTTCAAGAAGGCCAAGAATGGAGTTAAGCTACAGAGGGGTCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000232705.2
ENSMUST00000232997.2
CDS-3UTR TCA 90 bp CGAGGGACCCTGGCACATCTCTGGGATCAATGTCAGAACCTTGCCTGCCCTGAGCTCGGCATTCTGCCGTaGCTTTCGGCGAGGCTTCCT +
Preference number: 4 (lower is better)
Translates to: RGTLAHLWDQCQNLACPELGILP*LSARLP
Trigger: AGGAAGCCTCGCCGAAAGTCACGGCAGAATGCCGAG...CTCAGGGCAGGCAAGGTTCTGACATTGATCCCAGAGATGTGCCAGGGTCCCTCG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000004985.11
ENSMUST00000232705.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR TCA 90 bp GGCCTGCCATTAGAAAGAAGCTGCCGGCCATACACGTGGCAGGGGCAGCAGAGGGGTCTCCCGTGTGGGTaGGCACTTAAGACTGTATGG +
Preference number: 4 (lower is better)
Translates to: GLPLERSCRPYTWQGQQRGLPCG*ALKTVW
Trigger: CCATACAGTCTTAAGTGCTCACCCACACGGGAGACC...CCTCTGCTGCCCCTGCCACGTGTATGGCCGGCAGCTTCTTTCTAATGGCAGGCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000004985.11
ENSMUST00000232705.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR TCA 90 bp AGGGTCACAGAGTCCACAGCTGACCAGCTACCTGGGGATAGGGGGACGTGTCGGGGTCTCCCGTGTGGGTaGGCACTTAAGACTGTATGG +
Preference number: 4 (lower is better)
Translates to: RVTESTADQLPGDRGTCRGLPCG*ALKTVW
Trigger: CCATACAGTCTTAAGTGCTCACCCACACGGGAGACC...CCGACACGTCCCCCTATCCCCAGGTAGCTGGTCAGCTGTGGACTCTGTGACCCT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000004985.11
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233709.2
CDS-3UTR TCA 90 bp CCATTAGAAAGAAGCTGCCGGCCATACACGTGGCAGGGGCAGCAGAGGTTCTCACATCCCCGACTTCACTaGGGCTCCTTGGGGAGTCGC +
Preference number: 4 (lower is better)
Translates to: PLERSCRPYTWQGQQRFSHPRLH*GSLGSR
Trigger: GCGACTCCCCAAGGAGCCTCAGTGAAGTCGGGGATG...TGAGAACCTCTGCTGCCCCTGCCACGTGTATGGCCGGCAGCTTCTTTCTAATGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 7 transcripts:
ENSMUST00000004985.11
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR TCA 90 bp TACAGTTATGTACACCACGCCCTGTCCCGCGTGGCTGTGCTGTTTGCTGGACAGCATCCCCGACTTCACTaGGGCTCCTTGGGGAGTCGC +
Preference number: 4 (lower is better)
Translates to: YSYVHHALSRVAVLFAGQHPRLH*GSLGSR
Trigger: GCGACTCCCCAAGGAGCCTCAGTGAAGTCGGGGATG...CTGTCCAGCAAACAGCACAGCCACGCGGGACAGGGCGTGGTGTACATAACTGTA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000004985.11
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233709.2
CDS-3UTR TCA 90 bp GACGGGTGCGGGCCCCGCTGGACCGCATGGTGCTCACCAGATCCAGTTTCTCCAAACTGGGTCTTCCTCTaGAAGGAGAGACCACTACAG +
Preference number: 4 (lower is better)
Translates to: DGCGPRWTAWCSPDPVSPNWVFL*KERPLQ
Trigger: CTGTAGTGGTCTCTCCTTTCAGAGGAAGACCCAGTT...TGGAGAAACTGGATCTGGTGAGCACCATGCGGTCCAGCGGGGCCCGCACCCGTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000232705.2
ENSMUST00000232997.2
CDS-3UTR TCA 90 bp AGTCAGGGCCTGCCATTAGAAAGAAGCTGCCGGCCATACACGTGGCAGGGGCAGTTTGCCGAAGGGCATTaGTCTCCCTGCGCAGCATGC +
Preference number: 4 (lower is better)
Translates to: SQGLPLERSCRPYTWQGQFAEGH*SPCAAC
Trigger: GCATGCTGCGCAGGGAGATCAATGCCCTTCGGCAAA...CTGCCCCTGCCACGTGTATGGCCGGCAGCTTCTTTCTAATGGCAGGCCCTGACT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000004985.11
ENSMUST00000156029.8
ENSMUST00000233701.2
CDS-3UTR TCA 90 bp GGAAGGGAAGCTCTGAGGGTTCCCGAGGGACCCTGGCACATCTCTGGGATCAATAGGGGATTCCTGTTCTaGCAAGGAAGGCGCAGGCCC +
Preference number: 4 (lower is better)
Translates to: GREALRVPEGPWHISGINRGFLF*QGRRRP
Trigger: GGGCCTGCGCCTTCCTTGTCAGAACAGGAATCCCCT...ATTGATCCCAGAGATGTGCCAGGGTCCCTCGGGAACCCTCAGAGCTTCCCTTCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000004985.11
ENSMUST00000156029.8
ENSMUST00000233701.2
CDS-3UTR TCA 90 bp CTGCTGGAGGGCTGTGAGTGGGGGAGGGTCCTTACAGGTGGGGTAGCTTCTACCACAGGTAGCTGGAAGTaGCAAAGGCATGGGAGCCAC +
Preference number: 4 (lower is better)
Translates to: LLEGCEWGRVLTGGVASTTGSWK*QRHGSH
Trigger: GTGGCTCCCATGCCTTTGTCACTTCCAGCTACCTGT...GGTAGAAGCTACCCCACCTGTAAGGACCCTCCCCCACTCACAGCCCTCCAGCAG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000004985.11
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
CDS-3UTR GCA 90 bp GCGCCTGGCAGACATCCATCTAATGTAGCAGCTGGCCAGGAAGGAAATGGGACACGGCCCTCGGCATTCTaGCGTGACTTTCGGCGAGGC +
Preference number: 4 (lower is better)
Translates to: APGRHPSNVAAGQEGNGTRPSAF*RDFRRG
Trigger: GCCTCGCCGAAAGTCACGGCAGAATGCCGAGGGCCG...TGTCCCATTTCCTTCCTGGCCAGCTGCTACATTAGATGGATGTCTGCCAGGCGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000004985.11
ENSMUST00000232705.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR GCA 90 bp GGGACTCAAGCGCCTGGCAGACATCCATCTAATGTAGCAGCTGGCCAGGAAGGAGCTGGGCCCCACTGCTaGGGCTCTCCAGGTAGGATT +
Preference number: 4 (lower is better)
Translates to: GTQAPGRHPSNVAAGQEGAGPHC*GSPGRI
Trigger: AATCCTACCTGGAGAGCCGCAGCAGTGGGGCCCAGC...TCCTTCCTGGCCAGCTGCTACATTAGATGGATGTCTGCCAGGCGCTTGAGTCCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000004985.11
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR GCA 90 bp CCATTAGAAAGAAGCTGCCGGCCATACACGTGGCAGGGGCAGCAGAGGTTCTCAGCTGGGCCCCACTGCTaGGGCTCTCCAGGTAGGATT +
Preference number: 4 (lower is better)
Translates to: PLERSCRPYTWQGQQRFSAGPHC*GSPGRI
Trigger: AATCCTACCTGGAGAGCCGCAGCAGTGGGGCCCAGC...TGAGAACCTCTGCTGCCCCTGCCACGTGTATGGCCGGCAGCTTCTTTCTAATGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000004985.11
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR GCA 90 bp AAGGGAAGCTCTGAGGGTTCCCGAGGGACCCTGGCACATCTCTGGGATCAATGTGCTGGGCCCCACTGCTaGGGCTCTCCAGGTAGGATT +
Preference number: 4 (lower is better)
Translates to: KGSSEGSRGTLAHLWDQCAGPHC*GSPGRI
Trigger: AATCCTACCTGGAGAGCCGCAGCAGTGGGGCCCAGC...ACATTGATCCCAGAGATGTGCCAGGGTCCCTCGGGAACCCTCAGAGCTTCCCTT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000004985.11
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR GCA 90 bp AGCCCTCCAGGGGAACCACATGATTGGTCAATATTGGGTCTTGCCCTCGGAGACACTGCTGGGCCCCACTaGTGCGGCTCTCCAGGTAGG +
Preference number: 4 (lower is better)
Translates to: SPPGEPHDWSILGLALGDTAGPH*CGSPGR
Trigger: CCTACCTGGAGAGCCGCAGCAGTGGGGCCCAGCAGT...GTCTCCGAGGGCAAGACCCAATATTGACCAATCATGTGGTTCCCCTGGAGGGCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000004985.11
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR GCA 90 bp AGTCAGGGCCTGCCATTAGAAAGAAGCTGCCGGCCATACACGTGGCAGGGGCAGTCGTCCTGCTCCCGCTaGTCAGCATTTCTCTGGGAC +
Preference number: 4 (lower is better)
Translates to: SQGLPLERSCRPYTWQGQSSCSR*SAFLWD
Trigger: GTCCCAGAGAAATGCTGAGCAGCGGGAGCAGGACGA...CTGCCCCTGCCACGTGTATGGCCGGCAGCTTCTTTCTAATGGCAGGCCCTGACT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000004985.11
ENSMUST00000156029.8
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR GCA 90 bp GGACAGAGGAGAGGCAAAGAAGGCAGACACAGGCCCAGCTCGGCTCTCACAGGTTCGTCCTGCTCCCGCTaGTCAGCATTTCTCTGGGAC +
Preference number: 4 (lower is better)
Translates to: GQRRGKEGRHRPSSALTGSSCSR*SAFLWD
Trigger: GTCCCAGAGAAATGCTGAGCAGCGGGAGCAGGACGA...ACCTGTGAGAGCCGAGCTGGGCCTGTGTCTGCCTTCTTTGCCTCTCCTCTGTCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000156029.8
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR GCA 90 bp GGCCTGCCATTAGAAAGAAGCTGCCGGCCATACACGTGGCAGGGGCAGCAGAGGAGCTCCATGGCAGCCTaGTGTACTTTGACCTGCTCC +
Preference number: 4 (lower is better)
Translates to: GLPLERSCRPYTWQGQQRSSMAA*CTLTCS
Trigger: GGAGCAGGTCAAAGTACAGCAGGCTGCCATGGAGCT...CCTCTGCTGCCCCTGCCACGTGTATGGCCGGCAGCTTCTTTCTAATGGCAGGCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000004985.11
ENSMUST00000156029.8
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR GCA 90 bp GTCCAGTCAGGGCCTGCCATTAGAAAGAAGCTGCCGGCCATACACGTGGCAGGGCCGGAGGCGGACAGCTaGTCGGTGGAAAATTGTGTC +
Preference number: 4 (lower is better)
Translates to: VQSGPAIRKKLPAIHVAGPEADS*SVENCV
Trigger: GACACAATTTTCCACCGAGCAGCTGTCCGCCTCCGG...CCCTGCCACGTGTATGGCCGGCAGCTTCTTTCTAATGGCAGGCCCTGACTGGAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000004985.11
ENSMUST00000156029.8
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR GCA 90 bp CATCTCTGGGATCAATGTCAGAACCTTGCCTGCCCTGAGGTATGGTTAGGTGGGTCTCCCTGCGCAGCATaGGGACACGACGGGTGCGGG +
Preference number: 4 (lower is better)
Translates to: HLWDQCQNLACPEVWLGGSPCAA*GHDGCG
Trigger: CCCGCACCCGTCGTGTCCGCATGCTGCGCAGGGAGA...CCCACCTAACCATACCTCAGGGCAGGCAAGGTTCTGACATTGATCCCAGAGATG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000004985.11
ENSMUST00000156029.8
ENSMUST00000233701.2
CDS-3UTR GCA 90 bp GGGGGAAGGGAAGCTCTGAGGGTTCCCGAGGGACCCTGGCACATCTCTGGGATCGGCTGTGCTAGCTTTTaGCGAAGGGCATTGATCTCC +
Preference number: 4 (lower is better)
Translates to: GGREALRVPEGPWHISGIGCASF*RRALIS
Trigger: GGAGATCAATGCCCTTCGGCAAAAGCTAGCACAGCC...GATCCCAGAGATGTGCCAGGGTCCCTCGGGAACCCTCAGAGCTTCCCTTCCCCC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000004985.11
ENSMUST00000156029.8
ENSMUST00000233701.2
CDS-3UTR GCA 90 bp ATGATTGGTCAATATTGGGTCTTGCCCTCGGAGACCCAGTCCAGTCAGGGCCTGCTGGCTTCCCACGGCTaGGTTTGGGAGGCGTCAGGC +
Preference number: 4 (lower is better)
Translates to: MIGQYWVLPSETQSSQGLLASHG*VWEASG
Trigger: GCCTGACGCCTCCCAAACGCAGCCGTGGGAAGCCAG...CAGGCCCTGACTGGACTGGGTCTCCGAGGGCAAGACCCAATATTGACCAATCAT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000004985.11
ENSMUST00000156029.8
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR GCA 90 bp CTTGCCCTCGGAGACCCAGTCCAGTCAGGGCCTGCCATTAGAAAGAAGCTGCCGGCATCAGGAGGCTTCTaGCTGAGCCACTGTGGTCAG +
Preference number: 4 (lower is better)
Translates to: LALGDPVQSGPAIRKKLPASGGF*LSHCGQ
Trigger: CTGACCACAGTGGCTCAGGCAGAAGCCTCCTGATGC...CGGCAGCTTCTTTCTAATGGCAGGCCCTGACTGGACTGGGTCTCCGAGGGCAAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000004985.11
ENSMUST00000156029.8
ENSMUST00000233646.2
CDS-3UTR GCA 90 bp GGTCAATATTGGGTCTTGCCCTCGGAGACCCAGTCCAGTCAGGGCCTGCCATTAGCCTCTGCCTGCTTCTaGTCGCCCAGCTTCAGCACG +
Preference number: 4 (lower is better)
Translates to: GQYWVLPSETQSSQGLPLASACF*SPSFST
Trigger: CGTGCTGAAGCTGGGCGAGCAGAAGCAGGCAGAGGC...TAATGGCAGGCCCTGACTGGACTGGGTCTCCGAGGGCAAGACCCAATATTGACC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000004985.11
ENSMUST00000140587.9
ENSMUST00000156029.8
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
CDS-3UTR GCA 90 bp AGGGTCCTTACAGGTGGGGTAGCTTCTACCTGGGACTCAAGCGCCTGGCAGACATCTCCAGCCTCTGCCTaGTTCTGCTCGCCCAGCTTC +
Preference number: 4 (lower is better)
Translates to: RVLTGGVASTWDSSAWQTSPASA*FCSPSF
Trigger: GAAGCTGGGCGAGCAGAAGCAGGCAGAGGCTGGAGA...TGTCTGCCAGGCGCTTGAGTCCCAGGTAGAAGCTACCCCACCTGTAAGGACCCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000004985.11
ENSMUST00000156029.8
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
CDS-3UTR GCA 90 bp CAGTCCAGTCAGGGCCTGCCATTAGAAAGAAGCTGCCGGCCATACACGTGGCAGTCTCCAGCCTCTGCCTaGTTCTGCTCGCCCAGCTTC +
Preference number: 4 (lower is better)
Translates to: QSSQGLPLERSCRPYTWQSPASA*FCSPSF
Trigger: GAAGCTGGGCGAGCAGAAGCAGGCAGAGGCTGGAGA...CTGCCACGTGTATGGCCGGCAGCTTCTTTCTAATGGCAGGCCCTGACTGGACTG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000004985.11
ENSMUST00000140587.9
ENSMUST00000156029.8
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
CDS-3UTR GCA 90 bp CCTGCCATTAGAAAGAAGCTGCCGGCCATACACGTGGCAGGGGCAGCAGAGGTTTCTCCAGCCTCTGCCTaGTTCTGCTCGCCCAGCTTC +
Preference number: 4 (lower is better)
Translates to: PAIRKKLPAIHVAGAAEVSPASA*FCSPSF
Trigger: GAAGCTGGGCGAGCAGAAGCAGGCAGAGGCTGGAGA...AACCTCTGCTGCCCCTGCCACGTGTATGGCCGGCAGCTTCTTTCTAATGGCAGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000004985.11
ENSMUST00000140587.9
ENSMUST00000156029.8
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
CDS-3UTR CCA 90 bp GTCTTGCCCTCGGAGACCCAGTCCAGTCAGGGCCTGCCATTAGAAAGAAGCTGCAAGACTGTATGGGGATaGGGATCTCCGGCCCTCGGC +
Preference number: 4 (lower is better)
Translates to: VLPSETQSSQGLPLERSCKTVWG*GSPALG
Trigger: GCCGAGGGCCGGAGATCCCCATCCCCATACAGTCTT...GCAGCTTCTTTCTAATGGCAGGCCCTGACTGGACTGGGTCTCCGAGGGCAAGAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000004985.11
ENSMUST00000232705.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR CCA 90 bp CAAGCGCCTGGCAGACATCCATCTAATGTAGCAGCTGGCCAGGAAGGAAATGGGCTGGGCTGGGGGAGGTaGAAGGAGGTACCGGACGCA +
Preference number: 4 (lower is better)
Translates to: QAPGRHPSNVAAGQEGNGLGWGR*KEVPDA
Trigger: TGCGTCCGGTACCTCCTTCCACCTCCCCCAGCCCAG...CCCATTTCCTTCCTGGCCAGCTGCTACATTAGATGGATGTCTGCCAGGCGCTTG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 7 transcripts:
ENSMUST00000004985.11
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR CCA 90 bp AAGGTAGAAGTCAACATGGCAATTGGCGGTCTGCAAACCCGCCTGCGGCTTTGGCTGGGCTGGGGGAGGTaGAAGGAGGTACCGGACGCA +
Preference number: 4 (lower is better)
Translates to: KVEVNMAIGGLQTRLRLWLGWGR*KEVPDA
Trigger: TGCGTCCGGTACCTCCTTCCACCTCCCCCAGCCCAG...CCAAAGCCGCAGGCGGGTTTGCAGACCGCCAATTGCCATGTTGACTTCTACCTT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000004985.11
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233709.2
CDS-3UTR CCA 90 bp TCGGAGACCCAGTCCAGTCAGGGCCTGCCATTAGAAAGAAGCTGCCGGCCATACATGGCGCAGACTACGTaGGCCCAGTGGCCATCACTG +
Preference number: 4 (lower is better)
Translates to: SETQSSQGLPLERSCRPYMAQTT*AQWPSL
Trigger: CAGTGATGGCCACTGGGCCCACGTAGTCTGCGCCAT...GTATGGCCGGCAGCTTCTTTCTAATGGCAGGCCCTGACTGGACTGGGTCTCCGA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000004985.11
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR CCA 90 bp GCAAAGAAGGCAGACACAGGCCCAGCTCGGCTCTCACAGGTAGCTGGAAGTGACATGGCGCAGACTACGTaGGCCCAGTGGCCATCACTG +
Preference number: 4 (lower is better)
Translates to: AKKADTGPARLSQVAGSDMAQTT*AQWPSL
Trigger: CAGTGATGGCCACTGGGCCCACGTAGTCTGCGCCAT...GTCACTTCCAGCTACCTGTGAGAGCCGAGCTGGGCCTGTGTCTGCCTTCTTTGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR CCA 90 bp TCGGAGACCCAGTCCAGTCAGGGCCTGCCATTAGAAAGAAGCTGCCGGCCATACCCACCTTGGCCTTCCTaGCCCTCCTCCTCAGCTTCT +
Preference number: 4 (lower is better)
Translates to: SETQSSQGLPLERSCRPYPPWPS*PSSSAS
Trigger: AGAAGCTGAGGAGGAGGGCCAGGAAGGCCAAGGTGG...GTATGGCCGGCAGCTTCTTTCTAATGGCAGGCCCTGACTGGACTGGGTCTCCGA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000004985.11
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR CCA 90 bp CCTGCCATTAGAAAGAAGCTGCCGGCCATACACGTGGCAGGGGCAGCAGAGGTTCCACCTTGGCCTTCCTaGCCCTCCTCCTCAGCTTCT +
Preference number: 4 (lower is better)
Translates to: PAIRKKLPAIHVAGAAEVPPWPS*PSSSAS
Trigger: AGAAGCTGAGGAGGAGGGCCAGGAAGGCCAAGGTGG...AACCTCTGCTGCCCCTGCCACGTGTATGGCCGGCAGCTTCTTTCTAATGGCAGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000004985.11
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR CCA 90 bp TCCCGAGGGACCCTGGCACATCTCTGGGATCAATGTCAGAACCTTGCCTGCCCTCCACCTTGGCCTTCCTaGCCCTCCTCCTCAGCTTCT +
Preference number: 4 (lower is better)
Translates to: SRGTLAHLWDQCQNLACPPPWPS*PSSSAS
Trigger: AGAAGCTGAGGAGGAGGGCCAGGAAGGCCAAGGTGG...AGGGCAGGCAAGGTTCTGACATTGATCCCAGAGATGTGCCAGGGTCCCTCGGGA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000004985.11
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR CCA 90 bp GAGGGTCCTTACAGGTGGGGTAGCTTCTACCTGGGACTCAAGCGCCTGGCAGACGGTGATTCGGGCAAGTaGGTGCCCCTCTCAGGATCA +
Preference number: 4 (lower is better)
Translates to: EGPYRWGSFYLGLKRLADGDSGK*VPLSGS
Trigger: TGATCCTGAGAGGGGCACCCACTTGCCCGAATCACC...GTCTGCCAGGCGCTTGAGTCCCAGGTAGAAGCTACCCCACCTGTAAGGACCCTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000004985.11
ENSMUST00000156029.8
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR CCA 90 bp CGAGGGACCCTGGCACATCTCTGGGATCAATGTCAGAACCTTGCCTGCCCTGAGGCCTCTGGGGACAGATaGGCCCGGTTCTCTGGGATA +
Preference number: 4 (lower is better)
Translates to: RGTLAHLWDQCQNLACPEASGDR*ARFSGI
Trigger: TATCCCAGAGAACCGGGCCCATCTGTCCCCAGAGGC...CTCAGGGCAGGCAAGGTTCTGACATTGATCCCAGAGATGTGCCAGGGTCCCTCG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000004985.11
ENSMUST00000156029.8
ENSMUST00000233701.2
CDS-3UTR CCA 90 bp GATTGGTCAATATTGGGTCTTGCCCTCGGAGACCCAGTCCAGTCAGGGCCTGCCCCCCGCTGGACCGCATaGTGCTCACCAGATCCAGTT +
Preference number: 4 (lower is better)
Translates to: DWSILGLALGDPVQSGPAPRWTA*CSPDPV
Trigger: AACTGGATCTGGTGAGCACCATGCGGTCCAGCGGGG...GGCAGGCCCTGACTGGACTGGGTCTCCGAGGGCAAGACCCAATATTGACCAATC
60% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 3 transcripts:
ENSMUST00000004985.11
ENSMUST00000156029.8
ENSMUST00000233701.2
CDS-3UTR CCA 90 bp AGAAAGAAGCTGCCGGCCATACACGTGGCAGGGGCAGCAGAGGTTCTCATGCCTACAGCTCCGGCTCCTTaGCCGCTTCCGGGAATAGTG +
Preference number: 4 (lower is better)
Translates to: RKKLPAIHVAGAAEVLMPTAPAP*PLPGIV
Trigger: CACTATTCCCGGAAGCGGCCAAGGAGCCGGAGCTGT...AGGCATGAGAACCTCTGCTGCCCCTGCCACGTGTATGGCCGGCAGCTTCTTTCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000004985.11
ENSMUST00000156029.8
ENSMUST00000233701.2
CDS-3UTR CCA 90 bp AGCAGCCCTCCAGGGGAACCACATGATTGGTCAATATTGGGTCTTGCCCTCGGATCCCACGGCTGCGTTTaGGAGGCGTCAGGCCACTGC +
Preference number: 4 (lower is better)
Translates to: SSPPGEPHDWSILGLALGSHGCV*EASGHC
Trigger: GCAGTGGCCTGACGCCTCCCAAACGCAGCCGTGGGA...TCCGAGGGCAAGACCCAATATTGACCAATCATGTGGTTCCCCTGGAGGGCTGCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000004985.11
ENSMUST00000156029.8
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR CCA 90 bp GAGGGTCCTTACAGGTGGGGTAGCTTCTACCTGGGACTCAAGCGCCTGGCAGACGGCTCCAGGTCTCCGTaGTCTTCAAAGGGCATCAGG +
Preference number: 4 (lower is better)
Translates to: EGPYRWGSFYLGLKRLADGSRSP*SSKGIR
Trigger: CCTGATGCCCTTTGAAGACCACGGAGACCTGGAGCC...GTCTGCCAGGCGCTTGAGTCCCAGGTAGAAGCTACCCCACCTGTAAGGACCCTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000004985.11
ENSMUST00000156029.8
ENSMUST00000233561.2
ENSMUST00000233646.2
CDS-3UTR CCA 90 bp GGGAGGGTCCTTACAGGTGGGGTAGCTTCTACCTGGGACTCAAGCGCCTGGCAGCTGACTTCCGGATGCTaGTCTTGCGGCCTTCTAGCA +
Preference number: 4 (lower is better)
Translates to: GRVLTGGVASTWDSSAWQLTSGC*SCGLLA
Trigger: TGCTAGAAGGCCGCAAGACCAGCATCCGGAAGTCAG...CTGCCAGGCGCTTGAGTCCCAGGTAGAAGCTACCCCACCTGTAAGGACCCTCCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000004985.11
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
CDS-3UTR CCA 90 bp TGCCGCGGTGATCATGCTGATGCAGTGAGGCTTATGGCTGCTGCAGGAGGGGAGGGCTCAGGTGGATCATaGCGCGGTCATAGGCCACTT +
Preference number: 4 (lower is better)
Translates to: CRGDHADAVRLMAAAGGEGSGGS*RGHRPL
Trigger: AAGTGGCCTATGACCGCGCCATGATCCACCTGAGCC...CTCCCCTCCTGCAGCAGCCATAAGCCTCACTGCATCAGCATGATCACCGCGGCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000004985.11
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
3UTR CAA 72 bp ACCAGCTACCTGGGGATAGGGGGACGTGTCGGCTCCTaGATTAGGCTGTGCAGCATGGATGCACAAGGGAGG +
Preference number: 4 (lower is better)
Translates to: TSYLGIGGRVGS*IRLCSMDAQGR
Trigger: CCTCCCTTGTGCATCCATGCTGCACAGCCTAATCAAGGAGCCGACACGTCCCCCTATCCCCAGGTAGCTGGT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 8 transcripts:
ENSMUST00000004985.11
ENSMUST00000140973.9
ENSMUST00000156029.8
ENSMUST00000232997.2
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233709.2
3UTR CAA 72 bp CGGATGCTGGTCTTGCGGCCTTCTAGCATCTTGAGCTaGTCCACAGTGTCCTCCACACCCAGGGGCAGGACT +
Preference number: 4 (lower is better)
Translates to: RMLVLRPSSILS*STVSSTPRGRT
Trigger: AGTCCTGCCCCTGGGTGTGGAGGACACTGTGGACAAGCTCAAGATGCTAGAAGGCCGCAAGACCAGCATCCG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000140973.9
ENSMUST00000156029.8
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233701.2
ENSMUST00000233709.2
3UTR CAA 72 bp GTCCCATCGGGACCCCTCTGTAGCTTAACTCCATTCTaGGCCTTCTTGAAGAGGACGGAGGTTCGGCGGCCC +
Preference number: 4 (lower is better)
Translates to: VPSGPLCSLTPF*AFLKRTEVRRP
Trigger: GGGCCGCCGAACCTCCGTCCTCTTCAAGAAGGCCAAGAATGGAGTTAAGCTACAGAGGGGTCCCGATGGGAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000232705.2
ENSMUST00000232997.2
CDS-3UTR TCA 90 bp AGGGTCCTTACAGGTGGGGTAGCTTCTACCTGGGACTCAAGCGCCTGGCAGACATGGGTTCAATCTTCATaGAGAGCCCAGCCCGCTGCG +
Preference number: 4 (lower is better)
Translates to: RVLTGGVASTWDSSAWQTWVQSS*RAQPAA
Trigger: CGCAGCGGGCTGGGCTCTTCATGAAGATTGAACCCA...TGTCTGCCAGGCGCTTGAGTCCCAGGTAGAAGCTACCCCACCTGTAAGGACCCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000004985.11
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR TCA 90 bp GATTGGTCAATATTGGGTCTTGCCCTCGGAGACCCAGTCCAGTCAGGGCCTGCCTGGGTTCAATCTTCATaGAGAGCCCAGCCCGCTGCG +
Preference number: 4 (lower is better)
Translates to: DWSILGLALGDPVQSGPAWVQSS*RAQPAA
Trigger: CGCAGCGGGCTGGGCTCTTCATGAAGATTGAACCCA...GGCAGGCCCTGACTGGACTGGGTCTCCGAGGGCAAGACCCAATATTGACCAATC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000004985.11
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR TCA 90 bp CTCCAGGGGAACCACATGATTGGTCAATATTGGGTCTTGCCCTCGGAGACCCAGCATCCCCGACTTCACTaGGGCTCCTTGGGGAGTCGC +
Preference number: 4 (lower is better)
Translates to: LQGNHMIGQYWVLPSETQHPRLH*GSLGSR
Trigger: GCGACTCCCCAAGGAGCCTCAGTGAAGTCGGGGATG...CTGGGTCTCCGAGGGCAAGACCCAATATTGACCAATCATGTGGTTCCCCTGGAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 7 transcripts:
ENSMUST00000004985.11
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR TCA 90 bp GTCAACATGGCAATTGGCGGTCTGCAAACCCGCCTGCGGCTTTGGTGCTTAAAGCATCCCCGACTTCACTaGGGCTCCTTGGGGAGTCGC +
Preference number: 4 (lower is better)
Translates to: VNMAIGGLQTRLRLWCLKHPRLH*GSLGSR
Trigger: GCGACTCCCCAAGGAGCCTCAGTGAAGTCGGGGATG...CTTTAAGCACCAAAGCCGCAGGCGGGTTTGCAGACCGCCAATTGCCATGTTGAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000004985.11
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233709.2
CDS-3UTR TCA 90 bp GTCCAGTCAGGGCCTGCCATTAGAAAGAAGCTGCCGGCCATACACGTGGCAGGGAAGGTGTGGTACAGGTaGGATTCCAGCTTCCGCCTC +
Preference number: 4 (lower is better)
Translates to: VQSGPAIRKKLPAIHVAGKVWYR*DSSFRL
Trigger: GAGGCGGAAGCTGGAATCTCACCTGTACCACACCTT...CCCTGCCACGTGTATGGCCGGCAGCTTCTTTCTAATGGCAGGCCCTGACTGGAC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000004985.11
ENSMUST00000156029.8
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR TCA 90 bp GGACAGAGGAGAGGCAAAGAAGGCAGACACAGGCCCAGCTCGGCTCTCACAGGTAAGGTGTGGTACAGGTaGGATTCCAGCTTCCGCCTC +
Preference number: 4 (lower is better)
Translates to: GQRRGKEGRHRPSSALTGKVWYR*DSSFRL
Trigger: GAGGCGGAAGCTGGAATCTCACCTGTACCACACCTT...ACCTGTGAGAGCCGAGCTGGGCCTGTGTCTGCCTTCTTTGCCTCTCCTCTGTCC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000156029.8
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR TCA 90 bp TCAGGGCCTGCCATTAGAAAGAAGCTGCCGGCCATACACGTGGCAGGGGCAGCAACAGGTAGCTGGAAGTaGCAAAGGCATGGGAGCCAC +
Preference number: 4 (lower is better)
Translates to: SGPAIRKKLPAIHVAGAATGSWK*QRHGSH
Trigger: GTGGCTCCCATGCCTTTGTCACTTCCAGCTACCTGT...TGCTGCCCCTGCCACGTGTATGGCCGGCAGCTTCTTTCTAATGGCAGGCCCTGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000004985.11
ENSMUST00000140587.9
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
CDS-3UTR GCA 90 bp GCCCTGTGCCACAGCAGATCCGAGCCGCATCCTGTCCTAAAAGAGCAGTTTTTACGGCCCTCGGCATTCTaGCGTGACTTTCGGCGAGGC +
Preference number: 4 (lower is better)
Translates to: ALCHSRSEPHPVLKEQFLRPSAF*RDFRRG
Trigger: GCCTCGCCGAAAGTCACGGCAGAATGCCGAGGGCCG...TAAAAACTGCTCTTTTAGGACAGGATGCGGCTCGGATCTGCTGTGGCACAGGGC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000004985.11
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233709.2
CDS-3UTR GCA 90 bp ATTAGAAAGAAGCTGCCGGCCATACACGTGGCAGGGGCAGCAGAGGTTCTCATGGCTGGGCCCCACTGCTaGGGCTCTCCAGGTAGGATT +
Preference number: 4 (lower is better)
Translates to: IRKKLPAIHVAGAAEVLMAGPHC*GSPGRI
Trigger: AATCCTACCTGGAGAGCCGCAGCAGTGGGGCCCAGC...CATGAGAACCTCTGCTGCCCCTGCCACGTGTATGGCCGGCAGCTTCTTTCTAAT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000004985.11
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR GCA 90 bp CAATATTGGGTCTTGCCCTCGGAGACCCAGTCCAGTCAGGGCCTGCCATTAGAAGCTGGGCCCCACTGCTaGGGCTCTCCAGGTAGGATT +
Preference number: 4 (lower is better)
Translates to: QYWVLPSETQSSQGLPLEAGPHC*GSPGRI
Trigger: AATCCTACCTGGAGAGCCGCAGCAGTGGGGCCCAGC...TTCTAATGGCAGGCCCTGACTGGACTGGGTCTCCGAGGGCAAGACCCAATATTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000004985.11
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR GCA 90 bp CAACATGGCAATTGGCGGTCTGCAAACCCGCCTGCGGCTTTGGTGCTTAAAGAAACTGCTGGGCCCCACTaGTGCGGCTCTCCAGGTAGG +
Preference number: 4 (lower is better)
Translates to: QHGNWRSANPPAALVLKETAGPH*CGSPGR
Trigger: CCTACCTGGAGAGCCGCAGCAGTGGGGCCCAGCAGT...TTCTTTAAGCACCAAAGCCGCAGGCGGGTTTGCAGACCGCCAATTGCCATGTTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000004985.11
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233709.2
CDS-3UTR GCA 90 bp AAGGTAGAAGTCAACATGGCAATTGGCGGTCTGCAAACCCGCCTGCGGCTTTGGTCGTCGATTAGGGACTaGTGGGCCCCACTGCTGCGG +
Preference number: 4 (lower is better)
Translates to: KVEVNMAIGGLQTRLRLWSSIRD*WAPLLR
Trigger: CCGCAGCAGTGGGGCCCAGCAGTCCCTAATCGACGA...CCAAAGCCGCAGGCGGGTTTGCAGACCGCCAATTGCCATGTTGACTTCTACCTT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000004985.11
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233709.2
CDS-3UTR GCA 90 bp GCGCCTGGCAGACATCCATCTAATGTAGCAGCTGGCCAGGAAGGAAATGGGACATCGTCGATTAGGGACTaGTGGGCCCCACTGCTGCGG +
Preference number: 4 (lower is better)
Translates to: APGRHPSNVAAGQEGNGTSSIRD*WAPLLR
Trigger: CCGCAGCAGTGGGGCCCAGCAGTCCCTAATCGACGA...TGTCCCATTTCCTTCCTGGCCAGCTGCTACATTAGATGGATGTCTGCCAGGCGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000004985.11
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR GCA 90 bp TACAGTTATGTACACCACGCCCTGTCCCGCGTGGCTGTGCTGTTTGCTGGACAGGGACGAGAGGGAGACTaGAGGCAGCAGCGACATAGC +
Preference number: 4 (lower is better)
Translates to: YSYVHHALSRVAVLFAGQGREGD*RQQRHS
Trigger: GCTATGTCGCTGCTGCCTGCAGTCTCCCTCTCGTCC...CTGTCCAGCAAACAGCACAGCCACGCGGGACAGGGCGTGGTGTACATAACTGTA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000004985.11
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233709.2
CDS-3UTR GCA 90 bp GAGGGACCCTGGCACATCTCTGGGATCAATGTCAGAACCTTGCCTGCCCTGAGGTCGTCCTGCTCCCGCTaGTCAGCATTTCTCTGGGAC +
Preference number: 4 (lower is better)
Translates to: EGPWHISGINVRTLPALRSSCSR*SAFLWD
Trigger: GTCCCAGAGAAATGCTGAGCAGCGGGAGCAGGACGA...CCTCAGGGCAGGCAAGGTTCTGACATTGATCCCAGAGATGTGCCAGGGTCCCTC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000004985.11
ENSMUST00000156029.8
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR GCA 90 bp CAGGGCCTGCCATTAGAAAGAAGCTGCCGGCCATACACGTGGCAGGGGCAGCAGGAGCTCCTCCTTCACTaGACTAGTCTTCTCGTCCTG +
Preference number: 4 (lower is better)
Translates to: QGLPLERSCRPYTWQGQQELLLH*TSLLVL
Trigger: CAGGACGAGAAGACTAGTGCAGTGAAGGAGGAGCTC...CTGCTGCCCCTGCCACGTGTATGGCCGGCAGCTTCTTTCTAATGGCAGGCCCTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000004985.11
ENSMUST00000156029.8
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR GCA 90 bp GGGAGGGTCCTTACAGGTGGGGTAGCTTCTACCTGGGACTCAAGCGCCTGGCAGGAGCTCCTCCTTCACTaGACTAGTCTTCTCGTCCTG +
Preference number: 4 (lower is better)
Translates to: GRVLTGGVASTWDSSAWQELLLH*TSLLVL
Trigger: CAGGACGAGAAGACTAGTGCAGTGAAGGAGGAGCTC...CTGCCAGGCGCTTGAGTCCCAGGTAGAAGCTACCCCACCTGTAAGGACCCTCCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000004985.11
ENSMUST00000156029.8
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR GCA 90 bp CTGACCAGCTACCTGGGGATAGGGGGACGTGTCGGCTCCTTGATTAGGCTGTGCAGCTCCATGGCAGCCTaGTGTACTTTGACCTGCTCC +
Preference number: 4 (lower is better)
Translates to: LTSYLGIGGRVGSLIRLCSSMAA*CTLTCS
Trigger: GGAGCAGGTCAAAGTACAGCAGGCTGCCATGGAGCT...GCACAGCCTAATCAAGGAGCCGACACGTCCCCCTATCCCCAGGTAGCTGGTCAG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 6 transcripts:
ENSMUST00000004985.11
ENSMUST00000156029.8
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233709.2
CDS-3UTR GCA 90 bp CTTGCCCTCGGAGACCCAGTCCAGTCAGGGCCTGCCATTAGAAAGAAGCTGCCGAGCTCCATGGCAGCCTaGTGTACTTTGACCTGCTCC +
Preference number: 4 (lower is better)
Translates to: LALGDPVQSGPAIRKKLPSSMAA*CTLTCS
Trigger: GGAGCAGGTCAAAGTACAGCAGGCTGCCATGGAGCT...CGGCAGCTTCTTTCTAATGGCAGGCCCTGACTGGACTGGGTCTCCGAGGGCAAG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000004985.11
ENSMUST00000156029.8
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR GCA 90 bp GATTGGTCAATATTGGGTCTTGCCCTCGGAGACCCAGTCCAGTCAGGGCCTGCCCCGGAGGCGGACAGCTaGTCGGTGGAAAATTGTGTC +
Preference number: 4 (lower is better)
Translates to: DWSILGLALGDPVQSGPAPEADS*SVENCV
Trigger: GACACAATTTTCCACCGAGCAGCTGTCCGCCTCCGG...GGCAGGCCCTGACTGGACTGGGTCTCCGAGGGCAAGACCCAATATTGACCAATC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000004985.11
ENSMUST00000156029.8
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR GCA 90 bp GGTCTTGCCCTCGGAGACCCAGTCCAGTCAGGGCCTGCCATTAGAAAGAAGCTGCCGGAGGCGGACAGCTaGTCGGTGGAAAATTGTGTC +
Preference number: 4 (lower is better)
Translates to: GLALGDPVQSGPAIRKKLPEADS*SVENCV
Trigger: GACACAATTTTCCACCGAGCAGCTGTCCGCCTCCGG...CAGCTTCTTTCTAATGGCAGGCCCTGACTGGACTGGGTCTCCGAGGGCAAGACC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000004985.11
ENSMUST00000156029.8
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR GCA 90 bp CTGGCACATCTCTGGGATCAATGTCAGAACCTTGCCTGCCCTGAGGTATGGTTATCTCCCTGCGCAGCATaGGGACACGACGGGTGCGGG +
Preference number: 4 (lower is better)
Translates to: LAHLWDQCQNLACPEVWLSPCAA*GHDGCG
Trigger: CCCGCACCCGTCGTGTCCGCATGCTGCGCAGGGAGA...TAACCATACCTCAGGGCAGGCAAGGTTCTGACATTGATCCCAGAGATGTGCCAG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000004985.11
ENSMUST00000156029.8
ENSMUST00000233701.2
CDS-3UTR GCA 90 bp GGTGATGTTGCTGTCAGTTTGGCACAAGGGAGAGCAGAGAGCAATGAGGGAAGGCTGGCTTCCCACGGCTaGGTTTGGGAGGCGTCAGGC +
Preference number: 4 (lower is better)
Translates to: GDVAVSLAQGRAESNEGRLASHG*VWEASG
Trigger: GCCTGACGCCTCCCAAACGCAGCCGTGGGAAGCCAG...CCTTCCCTCATTGCTCTCTGCTCTCCCTTGTGCCAAACTGACAGCAACATCACC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000004985.11
ENSMUST00000156029.8
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR GCA 90 bp AACCTTGCCTGCCCTGAGGTATGGTTAGGTGGGAGAGACATGGAGAGAGCCGGCGCATCAGGAGGCTTCTaGCTGAGCCACTGTGGTCAG +
Preference number: 4 (lower is better)
Translates to: NLACPEVWLGGRDMERAGASGGF*LSHCGQ
Trigger: CTGACCACAGTGGCTCAGGCAGAAGCCTCCTGATGC...GCCGGCTCTCTCCATGTCTCTCCCACCTAACCATACCTCAGGGCAGGCAAGGTT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000004985.11
ENSMUST00000156029.8
ENSMUST00000233646.2
CDS-3UTR GCA 90 bp ATTAGAAAGAAGCTGCCGGCCATACACGTGGCAGGGGCAGCAGAGGTTCTCATGGCCTCTGCCTGCTTCTaGTCGCCCAGCTTCAGCACG +
Preference number: 4 (lower is better)
Translates to: IRKKLPAIHVAGAAEVLMASACF*SPSFST
Trigger: CGTGCTGAAGCTGGGCGAGCAGAAGCAGGCAGAGGC...CATGAGAACCTCTGCTGCCCCTGCCACGTGTATGGCCGGCAGCTTCTTTCTAAT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000004985.11
ENSMUST00000140587.9
ENSMUST00000156029.8
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
CDS-3UTR GCA 90 bp CAATATTGGGTCTTGCCCTCGGAGACCCAGTCCAGTCAGGGCCTGCCATTAGAAGCCTCTGCCTGCTTCTaGTCGCCCAGCTTCAGCACG +
Preference number: 4 (lower is better)
Translates to: QYWVLPSETQSSQGLPLEASACF*SPSFST
Trigger: CGTGCTGAAGCTGGGCGAGCAGAAGCAGGCAGAGGC...TTCTAATGGCAGGCCCTGACTGGACTGGGTCTCCGAGGGCAAGACCCAATATTG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000004985.11
ENSMUST00000140587.9
ENSMUST00000156029.8
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
CDS-3UTR GCA 90 bp GGTCAATATTGGGTCTTGCCCTCGGAGACCCAGTCCAGTCAGGGCCTGCCATTATCTCCAGCCTCTGCCTaGTTCTGCTCGCCCAGCTTC +
Preference number: 4 (lower is better)
Translates to: GQYWVLPSETQSSQGLPLSPASA*FCSPSF
Trigger: GAAGCTGGGCGAGCAGAAGCAGGCAGAGGCTGGAGA...TAATGGCAGGCCCTGACTGGACTGGGTCTCCGAGGGCAAGACCCAATATTGACC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000004985.11
ENSMUST00000140587.9
ENSMUST00000156029.8
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
CDS-3UTR GCA 90 bp CAATATTGGGTCTTGCCCTCGGAGACCCAGTCCAGTCAGGGCCTGCCATTAGAACCTCTCTCCAGCCTCTaGCTGCTTCTGCTCGCCCAG +
Preference number: 4 (lower is better)
Translates to: QYWVLPSETQSSQGLPLEPLSSL*LLLLAQ
Trigger: CTGGGCGAGCAGAAGCAGGCAGAGGCTGGAGAGAGG...TTCTAATGGCAGGCCCTGACTGGACTGGGTCTCCGAGGGCAAGACCCAATATTG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000004985.11
ENSMUST00000140587.9
ENSMUST00000156029.8
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
CDS-3UTR GCA 90 bp TCACAGAGTCCACAGCTGACCAGCTACCTGGGGATAGGGGGACGTGTCGGCTCCGTACTGACTTCCGGATaGTGGTCTTGCGGCCTTCTA +
Preference number: 4 (lower is better)
Translates to: SQSPQLTSYLGIGGRVGSVLTSG*WSCGLL
Trigger: TAGAAGGCCGCAAGACCAGCATCCGGAAGTCAGTAC...GGAGCCGACACGTCCCCCTATCCCCAGGTAGCTGGTCAGCTGTGGACTCTGTGA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000004985.11
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
CDS-3UTR CCA 90 bp GGGACCCTGGCACATCTCTGGGATCAATGTCAGAACCTTGCCTGCCCTGAGGTAAAGACTGTATGGGGATaGGGATCTCCGGCCCTCGGC +
Preference number: 4 (lower is better)
Translates to: GTLAHLWDQCQNLACPEVKTVWG*GSPALG
Trigger: GCCGAGGGCCGGAGATCCCCATCCCCATACAGTCTT...TACCTCAGGGCAGGCAAGGTTCTGACATTGATCCCAGAGATGTGCCAGGGTCCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000004985.11
ENSMUST00000232705.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR CCA 90 bp GGACAGAGGAGAGGCAAAGAAGGCAGACACAGGCCCAGCTCGGCTCTCACAGGTGCACTTAAGACTGTATaGGGATGGGGATCTCCGGCC +
Preference number: 4 (lower is better)
Translates to: GQRRGKEGRHRPSSALTGALKTV*GWGSPA
Trigger: GGCCGGAGATCCCCATCCCCATACAGTCTTAAGTGC...ACCTGTGAGAGCCGAGCTGGGCCTGTGTCTGCCTTCTTTGCCTCTCCTCTGTCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000232705.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR CCA 90 bp TGGGGGAAGGGAAGCTCTGAGGGTTCCCGAGGGACCCTGGCACATCTCTGGGATGACTTGGCAGGGAATTaGGGCTGCTCACTGTTTTCC +
Preference number: 4 (lower is better)
Translates to: WGKGSSEGSRGTLAHLWDDLAGN*GCSLFS
Trigger: GGAAAACAGTGAGCAGCCCCAATTCCCTGCCAAGTC...ATCCCAGAGATGTGCCAGGGTCCCTCGGGAACCCTCAGAGCTTCCCTTCCCCCA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 7 transcripts:
ENSMUST00000004985.11
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR CCA 90 bp CAGGGCCTGCCATTAGAAAGAAGCTGCCGGCCATACACGTGGCAGGGGCAGCAGGACTTGGCAGGGAATTaGGGCTGCTCACTGTTTTCC +
Preference number: 4 (lower is better)
Translates to: QGLPLERSCRPYTWQGQQDLAGN*GCSLFS
Trigger: GGAAAACAGTGAGCAGCCCCAATTCCCTGCCAAGTC...CTGCTGCCCCTGCCACGTGTATGGCCGGCAGCTTCTTTCTAATGGCAGGCCCTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000004985.11
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR CCA 90 bp CAGGGCCTGCCATTAGAAAGAAGCTGCCGGCCATACACGTGGCAGGGGCAGCAGAGGGTTTCTTGGACTTaGCAGGGAATTGGGGCTGCT +
Preference number: 4 (lower is better)
Translates to: QGLPLERSCRPYTWQGQQRVSWT*QGIGAA
Trigger: AGCAGCCCCAATTCCCTGCCAAGTCCAAGAAACCCT...CTGCTGCCCCTGCCACGTGTATGGCCGGCAGCTTCTTTCTAATGGCAGGCCCTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000004985.11
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR CCA 90 bp CCCTTCACTGTCACTACAGCTCCGGCTCCTTGGCCGCTTCCGGGAATAGTGTTCACACGAAAGCTGGGCTaGGGGAGGTGGAAGGAGGTA +
Preference number: 4 (lower is better)
Translates to: PFTVTTAPAPWPLPGIVFTRKLG*GRWKEV
Trigger: TACCTCCTTCCACCTCCCCCAGCCCAGCTTTCGTGT...GAACACTATTCCCGGAAGCGGCCAAGGAGCCGGAGCTGTAGTGACAGTGAAGGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000232705.2
ENSMUST00000232997.2
CDS-3UTR CCA 90 bp GAGGTATGGTTAGGTGGGAGAGACATGGAGAGAGCCGGCTGGCCCCAGAAAAGCACACGAAAGCTGGGCTaGGGGAGGTGGAAGGAGGTA +
Preference number: 4 (lower is better)
Translates to: EVWLGGRDMERAGWPQKSTRKLG*GRWKEV
Trigger: TACCTCCTTCCACCTCCCCCAGCCCAGCTTTCGTGT...GCTTTTCTGGGGCCAGCCGGCTCTCTCCATGTCTCTCCCACCTAACCATACCTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 7 transcripts:
ENSMUST00000004985.11
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR CCA 90 bp ATTGGTCAATATTGGGTCTTGCCCTCGGAGACCCAGTCCAGTCAGGGCCTGCCAGTAAGCAGCAGGCAATaGGGGCGCTTCTGGCTGGCT +
Preference number: 4 (lower is better)
Translates to: IGQYWVLPSETQSSQGLPVSSRQ*GRFWLA
Trigger: AGCCAGCCAGAAGCGCCCCCATTGCCTGCTGCTTAC...TGGCAGGCCCTGACTGGACTGGGTCTCCGAGGGCAAGACCCAATATTGACCAAT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000004985.11
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR CCA 90 bp GCGCCTGGCAGACATCCATCTAATGTAGCAGCTGGCCAGGAAGGAAATGGGACATCGATTAGGGACTGCTaGGCCCCACTGCTGCGGCTC +
Preference number: 4 (lower is better)
Translates to: APGRHPSNVAAGQEGNGTSIRDC*APLLRL
Trigger: GAGCCGCAGCAGTGGGGCCCAGCAGTCCCTAATCGA...TGTCCCATTTCCTTCCTGGCCAGCTGCTACATTAGATGGATGTCTGCCAGGCGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000004985.11
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR CCA 90 bp AGTCAGGGCCTGCCATTAGAAAGAAGCTGCCGGCCATACACGTGGCAGGGGCAGACTACGTGGGCCCAGTaGCCATCACTGGTCTGTTTG +
Preference number: 4 (lower is better)
Translates to: SQGLPLERSCRPYTWQGQTTWAQ*PSLVCL
Trigger: CAAACAGACCAGTGATGGCCACTGGGCCCACGTAGT...CTGCCCCTGCCACGTGTATGGCCGGCAGCTTCTTTCTAATGGCAGGCCCTGACT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000004985.11
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR CCA 90 bp GGTCAATATTGGGTCTTGCCCTCGGAGACCCAGTCCAGTCAGGGCCTGCCATTAATGGCGCAGACTACGTaGGCCCAGTGGCCATCACTG +
Preference number: 4 (lower is better)
Translates to: GQYWVLPSETQSSQGLPLMAQTT*AQWPSL
Trigger: CAGTGATGGCCACTGGGCCCACGTAGTCTGCGCCAT...TAATGGCAGGCCCTGACTGGACTGGGTCTCCGAGGGCAAGACCCAATATTGACC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000004985.11
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR CCA 90 bp GGACCCTGGCACATCTCTGGGATCAATGTCAGAACCTTGCCTGCCCTGAGGTATCCTCAGGGATCCAGATaGCGCAGACTACGTGGGCCC +
Preference number: 4 (lower is better)
Translates to: GPWHISGINVRTLPALRYPQGSR*RRLRGP
Trigger: GGGCCCACGTAGTCTGCGCCATCTGGATCCCTGAGG...ATACCTCAGGGCAGGCAAGGTTCTGACATTGATCCCAGAGATGTGCCAGGGTCC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000004985.11
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR CCA 90 bp CTTGCCCTCGGAGACCCAGTCCAGTCAGGGCCTGCCATTAGAAAGAAGCTGCCGCTTTATGGCACTGAATaGCCGCGCCCAGCCCTTTCT +
Preference number: 4 (lower is better)
Translates to: LALGDPVQSGPAIRKKLPLYGTE*PRPALS
Trigger: AGAAAGGGCTGGGCGCGGCCATTCAGTGCCATAAAG...CGGCAGCTTCTTTCTAATGGCAGGCCCTGACTGGACTGGGTCTCCGAGGGCAAG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000004985.11
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR CCA 90 bp TGCCGCGGTGATCATGCTGATGCAGTGAGGCTTATGGCTGCTGCAGGAGGGGAGCTTTATGGCACTGAATaGCCGCGCCCAGCCCTTTCT +
Preference number: 4 (lower is better)
Translates to: CRGDHADAVRLMAAAGGELYGTE*PRPALS
Trigger: AGAAAGGGCTGGGCGCGGCCATTCAGTGCCATAAAG...CTCCCCTCCTGCAGCAGCCATAAGCCTCACTGCATCAGCATGATCACCGCGGCA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000004985.11
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233709.2
CDS-3UTR CCA 90 bp GGAGAGGCAAAGAAGGCAGACACAGGCCCAGCTCGGCTCTCACAGGTAGCTGGACTTTATGGCACTGAATaGCCGCGCCCAGCCCTTTCT +
Preference number: 4 (lower is better)
Translates to: GEAKKADTGPARLSQVAGLYGTE*PRPALS
Trigger: AGAAAGGGCTGGGCGCGGCCATTCAGTGCCATAAAG...TCCAGCTACCTGTGAGAGCCGAGCTGGGCCTGTGTCTGCCTTCTTTGCCTCTCC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR CCA 90 bp GAAAGAAGCTGCCGGCCATACACGTGGCAGGGGCAGCAGAGGTTCTCATGCCTCGCCACACTTGGAGAGTaGGCCTCACAATACGCAGTC +
Preference number: 4 (lower is better)
Translates to: ERSCRPYTWQGQQRFSCLATLGE*ASQYAV
Trigger: GACTGCGTATTGTGAGGCCCACTCTCCAAGTGTGGC...GAGGCATGAGAACCTCTGCTGCCCCTGCCACGTGTATGGCCGGCAGCTTCTTTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000004985.11
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR CCA 90 bp TTGCCCTCGGAGACCCAGTCCAGTCAGGGCCTGCCATTAGAAAGAAGCTGCCGGGCCACACTTGGAGAGTaGGCCTCACAATACGCAGTC +
Preference number: 4 (lower is better)
Translates to: LPSETQSSQGLPLERSCRATLGE*ASQYAV
Trigger: GACTGCGTATTGTGAGGCCCACTCTCCAAGTGTGGC...CCGGCAGCTTCTTTCTAATGGCAGGCCCTGACTGGACTGGGTCTCCGAGGGCAA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000004985.11
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR CCA 90 bp TTGCCCTCGGAGACCCAGTCCAGTCAGGGCCTGCCATTAGAAAGAAGCTGCCGGTTCACTGAGGCTCCTTaGGGAGTCGCCCTTTCTCCT +
Preference number: 4 (lower is better)
Translates to: LPSETQSSQGLPLERSCRFTEAP*GVALSP
Trigger: AGGAGAAAGGGCGACTCCCCAAGGAGCCTCAGTGAA...CCGGCAGCTTCTTTCTAATGGCAGGCCCTGACTGGACTGGGTCTCCGAGGGCAA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000004985.11
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR CCA 90 bp TACAGTTATGTACACCACGCCCTGTCCCGCGTGGCTGTGCTGTTTGCTGGACAGCCACCTTGGCCTTCCTaGCCCTCCTCCTCAGCTTCT +
Preference number: 4 (lower is better)
Translates to: YSYVHHALSRVAVLFAGQPPWPS*PSSSAS
Trigger: AGAAGCTGAGGAGGAGGGCCAGGAAGGCCAAGGTGG...CTGTCCAGCAAACAGCACAGCCACGCGGGACAGGGCGTGGTGTACATAACTGTA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000004985.11
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233709.2
CDS-3UTR CCA 90 bp GGAAGGGAAGCTCTGAGGGTTCCCGAGGGACCCTGGCACATCTCTGGGATCAATGGTGATTCGGGCAAGTaGGTGCCCCTCTCAGGATCA +
Preference number: 4 (lower is better)
Translates to: GREALRVPEGPWHISGINGDSGK*VPLSGS
Trigger: TGATCCTGAGAGGGGCACCCACTTGCCCGAATCACC...ATTGATCCCAGAGATGTGCCAGGGTCCCTCGGGAACCCTCAGAGCTTCCCTTCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000004985.11
ENSMUST00000156029.8
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR CCA 90 bp CTGCCATTAGAAAGAAGCTGCCGGCCATACACGTGGCAGGGGCAGCAGAGGTTCGGTGATTCGGGCAAGTaGGTGCCCCTCTCAGGATCA +
Preference number: 4 (lower is better)
Translates to: LPLERSCRPYTWQGQQRFGDSGK*VPLSGS
Trigger: TGATCCTGAGAGGGGCACCCACTTGCCCGAATCACC...GAACCTCTGCTGCCCCTGCCACGTGTATGGCCGGCAGCTTCTTTCTAATGGCAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000004985.11
ENSMUST00000156029.8
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR CCA 90 bp CTGGCTGGCCAGACAGGAGCTCCATCAGTGAGCTCTGCTTCTGTAAGGAGAGCAGCCTCTGGGGACAGATaGGCCCGGTTCTCTGGGATA +
Preference number: 4 (lower is better)
Translates to: LAGQTGAPSVSSASVRRAASGDR*ARFSGI
Trigger: TATCCCAGAGAACCGGGCCCATCTGTCCCCAGAGGC...TGCTCTCCTTACAGAAGCAGAGCTCACTGATGGAGCTCCTGTCTGGCCAGCCAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000004985.11
CDS-3UTR CCA 90 bp TTGCCCTCGGAGACCCAGTCCAGTCAGGGCCTGCCATTAGAAAGAAGCTGCCGGGATGGGTTTCAGGGTTaGGGGATCTGGAGGGGATTC +
Preference number: 4 (lower is better)
Translates to: LPSETQSSQGLPLERSCRDGFQG*GIWRGF
Trigger: GAATCCCCTCCAGATCCCCCAACCCTGAAACCCATC...CCGGCAGCTTCTTTCTAATGGCAGGCCCTGACTGGACTGGGTCTCCGAGGGCAA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000004985.11
ENSMUST00000156029.8
ENSMUST00000233701.2
CDS-3UTR CCA 90 bp CCTGCCATTAGAAAGAAGCTGCCGGCCATACACGTGGCAGGGGCAGCAGAGGTTAGAGGGGTGTCAGGATaGCTGTCGGGGTTTGTGAGG +
Preference number: 4 (lower is better)
Translates to: PAIRKKLPAIHVAGAAEVRGVSG*LSGFVR
Trigger: CCTCACAAACCCCGACAGCCATCCTGACACCCCTCT...AACCTCTGCTGCCCCTGCCACGTGTATGGCCGGCAGCTTCTTTCTAATGGCAGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000004985.11
ENSMUST00000156029.8
ENSMUST00000233701.2
CDS-3UTR CCA 90 bp GAGGTATGGTTAGGTGGGAGAGACATGGAGAGAGCCGGCTGGCCCCAGAAAAGCTCGTCCTCTGGGCCATaGTCCTCGCCATTCTCAAGG +
Preference number: 4 (lower is better)
Translates to: EVWLGGRDMERAGWPQKSSSSGP*SSPFSR
Trigger: CCTTGAGAATGGCGAGGACCATGGCCCAGAGGACGA...GCTTTTCTGGGGCCAGCCGGCTCTCTCCATGTCTCTCCCACCTAACCATACCTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000004985.11
ENSMUST00000156029.8
ENSMUST00000233701.2
CDS-3UTR CCA 90 bp GTGATGTTGCTGTCAGTTTGGCACAAGGGAGAGCAGAGAGCAATGAGGGAAGGGTCCCACGGCTGCGTTTaGGAGGCGTCAGGCCACTGC +
Preference number: 4 (lower is better)
Translates to: VMLLSVWHKGEQRAMREGSHGCV*EASGHC
Trigger: GCAGTGGCCTGACGCCTCCCAAACGCAGCCGTGGGA...CCCTTCCCTCATTGCTCTCTGCTCTCCCTTGTGCCAAACTGACAGCAACATCAC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000004985.11
ENSMUST00000156029.8
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR CCA 90 bp CGAGGGACCCTGGCACATCTCTGGGATCAATGTCAGAACCTTGCCTGCCCTGAGGGCTCCAGGTCTCCGTaGTCTTCAAAGGGCATCAGG +
Preference number: 4 (lower is better)
Translates to: RGTLAHLWDQCQNLACPEGSRSP*SSKGIR
Trigger: CCTGATGCCCTTTGAAGACCACGGAGACCTGGAGCC...CTCAGGGCAGGCAAGGTTCTGACATTGATCCCAGAGATGTGCCAGGGTCCCTCG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000004985.11
ENSMUST00000156029.8
ENSMUST00000233561.2
ENSMUST00000233646.2
CDS-3UTR CCA 90 bp TTGGGTCTTGCCCTCGGAGACCCAGTCCAGTCAGGGCCTGCCATTAGAAAGAAGGTGGAGGGACAGGGATaGGGACACCGTTGTGCAGGA +
Preference number: 4 (lower is better)
Translates to: LGLALGDPVQSGPAIRKKVEGQG*GHRCAG
Trigger: TCCTGCACAACGGTGTCCCCATCCCTGTCCCTCCAC...CTTCTTTCTAATGGCAGGCCCTGACTGGACTGGGTCTCCGAGGGCAAGACCCAA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000004985.11
ENSMUST00000140587.9
ENSMUST00000156029.8
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
CDS-3UTR CCA 90 bp TGGTCAATATTGGGTCTTGCCCTCGGAGACCCAGTCCAGTCAGGGCCTGCCATTGTGGAGGGACAGGGATaGGGACACCGTTGTGCAGGA +
Preference number: 4 (lower is better)
Translates to: WSILGLALGDPVQSGPAIVEGQG*GHRCAG
Trigger: TCCTGCACAACGGTGTCCCCATCCCTGTCCCTCCAC...AATGGCAGGCCCTGACTGGACTGGGTCTCCGAGGGCAAGACCCAATATTGACCA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000004985.11
ENSMUST00000140587.9
ENSMUST00000156029.8
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
CDS-3UTR CCA 90 bp ACGTGGCAGGGGCAGCAGAGGTTCTCATGCCTCAGGGACAGAGGAGAGGCAAAGCTGACTTCCGGATGCTaGTCTTGCGGCCTTCTAGCA +
Preference number: 4 (lower is better)
Translates to: TWQGQQRFSCLRDRGEAKLTSGC*SCGLLA
Trigger: TGCTAGAAGGCCGCAAGACCAGCATCCGGAAGTCAG...CTTTGCCTCTCCTCTGTCCCTGAGGCATGAGAACCTCTGCTGCCCCTGCCACGT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000004985.11
ENSMUST00000140587.9
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
CDS-3UTR CCA 90 bp TCCCGAGGGACCCTGGCACATCTCTGGGATCAATGTCAGAACCTTGCCTGCCCTGGCTCAGGTGGATCATaGCGCGGTCATAGGCCACTT +
Preference number: 4 (lower is better)
Translates to: SRGTLAHLWDQCQNLACPGSGGS*RGHRPL
Trigger: AAGTGGCCTATGACCGCGCCATGATCCACCTGAGCC...AGGGCAGGCAAGGTTCTGACATTGATCCCAGAGATGTGCCAGGGTCCCTCGGGA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000004985.11
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
CDS-3UTR TCA 90 bp GGACCCTGGCACATCTCTGGGATCAATGTCAGAACCTTGCCTGCCCTGAGGTATCTCGGCATTCTGCCGTaGCTTTCGGCGAGGCTTCCT +
Preference number: 4 (lower is better)
Translates to: GPWHISGINVRTLPALRYLGILP*LSARLP
Trigger: AGGAAGCCTCGCCGAAAGTCACGGCAGAATGCCGAG...ATACCTCAGGGCAGGCAAGGTTCTGACATTGATCCCAGAGATGTGCCAGGGTCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000004985.11
ENSMUST00000232705.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR TCA 90 bp AGGGTCCTTACAGGTGGGGTAGCTTCTACCTGGGACTCAAGCGCCTGGCAGACAGGTCTCCCGTGTGGGTaGGCACTTAAGACTGTATGG +
Preference number: 4 (lower is better)
Translates to: RVLTGGVASTWDSSAWQTGLPCG*ALKTVW
Trigger: CCATACAGTCTTAAGTGCTCACCCACACGGGAGACC...TGTCTGCCAGGCGCTTGAGTCCCAGGTAGAAGCTACCCCACCTGTAAGGACCCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000004985.11
ENSMUST00000232705.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR TCA 90 bp CAGGGCCTGCCATTAGAAAGAAGCTGCCGGCCATACACGTGGCAGGGGCAGCAGCATCACTGGTCTGTTTaGAGGCCCCACCTTTATTGG +
Preference number: 4 (lower is better)
Translates to: QGLPLERSCRPYTWQGQQHHWSV*RPHLYW
Trigger: CCAATAAAGGTGGGGCCTTCAAACAGACCAGTGATG...CTGCTGCCCCTGCCACGTGTATGGCCGGCAGCTTCTTTCTAATGGCAGGCCCTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000004985.11
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR TCA 90 bp GGGACTCAAGCGCCTGGCAGACATCCATCTAATGTAGCAGCTGGCCAGGAAGGATGGGTTCAATCTTCATaGAGAGCCCAGCCCGCTGCG +
Preference number: 4 (lower is better)
Translates to: GTQAPGRHPSNVAAGQEGWVQSS*RAQPAA
Trigger: CGCAGCGGGCTGGGCTCTTCATGAAGATTGAACCCA...TCCTTCCTGGCCAGCTGCTACATTAGATGGATGTCTGCCAGGCGCTTGAGTCCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000004985.11
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR TCA 90 bp TCACAGAGTCCACAGCTGACCAGCTACCTGGGGATAGGGGGACGTGTCGGCTCCAACTGGGTCTTCCTCTaGAAGGAGAGACCACTACAG +
Preference number: 4 (lower is better)
Translates to: SQSPQLTSYLGIGGRVGSNWVFL*KERPLQ
Trigger: CTGTAGTGGTCTCTCCTTTCAGAGGAAGACCCAGTT...GGAGCCGACACGTCCCCCTATCCCCAGGTAGCTGGTCAGCTGTGGACTCTGTGA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000004985.11
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233709.2
CDS-3UTR TCA 90 bp TGGGGGAAGGGAAGCTCTGAGGGTTCCCGAGGGACCCTGGCACATCTCTGGGATGTTTCTGCCAGTATTTaGGCTCCTCCTTCACTGCAC +
Preference number: 4 (lower is better)
Translates to: WGKGSSEGSRGTLAHLWDVSASI*APPSLH
Trigger: GTGCAGTGAAGGAGGAGCTCAAATACTGGCAGAAAC...ATCCCAGAGATGTGCCAGGGTCCCTCGGGAACCCTCAGAGCTTCCCTTCCCCCA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 8 transcripts:
ENSMUST00000004985.11
ENSMUST00000156029.8
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR TCA 90 bp TCCCGAGGGACCCTGGCACATCTCTGGGATCAATGTCAGAACCTTGCCTGCCCTAAGGTGTGGTACAGGTaGGATTCCAGCTTCCGCCTC +
Preference number: 4 (lower is better)
Translates to: SRGTLAHLWDQCQNLACPKVWYR*DSSFRL
Trigger: GAGGCGGAAGCTGGAATCTCACCTGTACCACACCTT...AGGGCAGGCAAGGTTCTGACATTGATCCCAGAGATGTGCCAGGGTCCCTCGGGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000004985.11
ENSMUST00000156029.8
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR TCA 90 bp GGGACCCTGGCACATCTCTGGGATCAATGTCAGAACCTTGCCTGCCCTGAGGTACACAGTCTTGTTCAGTaGCAGGAGCTGTGGTGGCGG +
Preference number: 4 (lower is better)
Translates to: GTLAHLWDQCQNLACPEVHSLVQ*QELWWR
Trigger: CCGCCACCACAGCTCCTGTCACTGAACAAGACTGTG...TACCTCAGGGCAGGCAAGGTTCTGACATTGATCCCAGAGATGTGCCAGGGTCCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000004985.11
ENSMUST00000156029.8
ENSMUST00000233701.2
CDS-3UTR TCA 90 bp CCTTCTAGCATCTTGAGCTTGTCCACAGTGTCCTCCACACCCAGGGGCAGGACTCACAGTCTTGTTCAGTaGCAGGAGCTGTGGTGGCGG +
Preference number: 4 (lower is better)
Translates to: PSSILSLSTVSSTPRGRTHSLVQ*QELWWR
Trigger: CCGCCACCACAGCTCCTGTCACTGAACAAGACTGTG...AGTCCTGCCCCTGGGTGTGGAGGACACTGTGGACAAGCTCAAGATGCTAGAAGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000156029.8
ENSMUST00000233701.2
CDS-3UTR TCA 90 bp CAGTCCAGTCAGGGCCTGCCATTAGAAAGAAGCTGCCGGCCATACACGTGGCAGAAGGTTTGCTGTCGCTaGTGGGTTTCAGGGTTGGGG +
Preference number: 4 (lower is better)
Translates to: QSSQGLPLERSCRPYTWQKVCCR*WVSGLG
Trigger: CCCCAACCCTGAAACCCATCAGCGACAGCAAACCTT...CTGCCACGTGTATGGCCGGCAGCTTCTTTCTAATGGCAGGCCCTGACTGGACTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000004985.11
ENSMUST00000156029.8
ENSMUST00000233701.2
CDS-3UTR TCA 90 bp AGAAAGAAGCTGCCGGCCATACACGTGGCAGGGGCAGCAGAGGTTCTCATGCCTCATTCTTGGCCTTCTTaGAGAGGACGGAGGTTCGGC +
Preference number: 4 (lower is better)
Translates to: RKKLPAIHVAGAAEVLMPHSWPS*RGRRFG
Trigger: GCCGAACCTCCGTCCTCTTCAAGAAGGCCAAGAATG...AGGCATGAGAACCTCTGCTGCCCCTGCCACGTGTATGGCCGGCAGCTTCTTTCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000004985.11
ENSMUST00000156029.8
ENSMUST00000233701.2
CDS-3UTR TCA 90 bp CAATATTGGGTCTTGCCCTCGGAGACCCAGTCCAGTCAGGGCCTGCCATTAGAACAGGAGGCTTCTGCCTaGGCCACTGTGGTCAGAGTC +
Preference number: 4 (lower is better)
Translates to: QYWVLPSETQSSQGLPLEQEASA*ATVVRV
Trigger: GACTCTGACCACAGTGGCTCAGGCAGAAGCCTCCTG...TTCTAATGGCAGGCCCTGACTGGACTGGGTCTCCGAGGGCAAGACCCAATATTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000004985.11
ENSMUST00000156029.8
ENSMUST00000233646.2
CDS-3UTR TCA 90 bp GGGAGGGTCCTTACAGGTGGGGTAGCTTCTACCTGGGACTCAAGCGCCTGGCAGATAGGCCACTTGTACTaGCTTCCGGATGCTGGTCTT +
Preference number: 4 (lower is better)
Translates to: GRVLTGGVASTWDSSAWQIGHLY*LPDAGL
Trigger: AAGACCAGCATCCGGAAGTCAGTACAAGTGGCCTAT...CTGCCAGGCGCTTGAGTCCCAGGTAGAAGCTACCCCACCTGTAAGGACCCTCCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000004985.11
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
CDS-3UTR TCA 90 bp GAGGGACCCTGGCACATCTCTGGGATCAATGTCAGAACCTTGCCTGCCCTGAGGACAGGTAGCTGGAAGTaGCAAAGGCATGGGAGCCAC +
Preference number: 4 (lower is better)
Translates to: EGPWHISGINVRTLPALRTGSWK*QRHGSH
Trigger: GTGGCTCCCATGCCTTTGTCACTTCCAGCTACCTGT...CCTCAGGGCAGGCAAGGTTCTGACATTGATCCCAGAGATGTGCCAGGGTCCCTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000004985.11
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
CDS-3UTR GCA 90 bp CCAGGGGAACCACATGATTGGTCAATATTGGGTCTTGCCCTCGGAGACCCAGTCGGACGAGAGGGAGACTaGAGGCAGCAGCGACATAGC +
Preference number: 4 (lower is better)
Translates to: PGEPHDWSILGLALGDPVGREGD*RQQRHS
Trigger: GCTATGTCGCTGCTGCCTGCAGTCTCCCTCTCGTCC...GACTGGGTCTCCGAGGGCAAGACCCAATATTGACCAATCATGTGGTTCCCCTGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000004985.11
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR GCA 90 bp ATTGGTCAATATTGGGTCTTGCCCTCGGAGACCCAGTCCAGTCAGGGCCTGCCATCGTCCTGCTCCCGCTaGTCAGCATTTCTCTGGGAC +
Preference number: 4 (lower is better)
Translates to: IGQYWVLPSETQSSQGLPSSCSR*SAFLWD
Trigger: GTCCCAGAGAAATGCTGAGCAGCGGGAGCAGGACGA...TGGCAGGCCCTGACTGGACTGGGTCTCCGAGGGCAAGACCCAATATTGACCAAT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000004985.11
ENSMUST00000156029.8
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR GCA 90 bp TTCTTGAAGAGGACGGAGGTTCGGCGGCCCACGGTGCCGAGAGGGGTGTCAGGATCATGGCGAAGTTTCTaGCAGTATTTGAGCTCCTCC +
Preference number: 4 (lower is better)
Translates to: FLKRTEVRRPTVPRGVSGSWRSF*QYLSSS
Trigger: GGAGGAGCTCAAATACTGGCAGAAACTTCGCCATGA...TCCTGACACCCCTCTCGGCACCGTGGGCCGCCGAACCTCCGTCCTCTTCAAGAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000232705.2
ENSMUST00000232997.2
CDS-3UTR GCA 90 bp GAGGGAAGGATTCCGAGACTGAAAAATAGAGACAGAGGAGATAGTGTTGGGGGACCGATGTTCTCTGCCTaGCGCCGGGCGTGCCGCAGG +
Preference number: 4 (lower is better)
Translates to: EGRIPRLKNRDRGDSVGGPMFSA*RRACRR
Trigger: CCTGCGGCACGCCCGGCGGCAGGCAGAGAACATCGG...TCCCCCAACACTATCTCCTCTGTCTCTATTTTTCAGTCTCGGAATCCTTCCCTC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 5 transcripts:
ENSMUST00000004985.11
ENSMUST00000156029.8
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233709.2
CDS-3UTR GCA 90 bp CTGGCTGGCCAGACAGGAGCTCCATCAGTGAGCTCTGCTTCTGTAAGGAGAGCACAGTTCCTTCAGCTGTaGCTCTGGGGACAGATGGGC +
Preference number: 4 (lower is better)
Translates to: LAGQTGAPSVSSASVRRAQFLQL*LWGQMG
Trigger: GCCCATCTGTCCCCAGAGGCACAGCTGAAGGAACTG...TGCTCTCCTTACAGAAGCAGAGCTCACTGATGGAGCTCCTGTCTGGCCAGCCAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000004985.11
CDS-3UTR GCA 90 bp GGCCTGCCATTAGAAAGAAGCTGCCGGCCATACACGTGGCAGGGGCAGCAGAGGAGTGTTCATCCTCTGTaGTGGCTGGAGAAGCAGGAT +
Preference number: 4 (lower is better)
Translates to: GLPLERSCRPYTWQGQQRSVHPL*WLEKQD
Trigger: ATCCTGCTTCTCCAGCCAGCACAGAGGATGAACACT...CCTCTGCTGCCCCTGCCACGTGTATGGCCGGCAGCTTCTTTCTAATGGCAGGCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000004985.11
ENSMUST00000156029.8
ENSMUST00000233701.2
CDS-3UTR GCA 90 bp TCAGGGCCTGCCATTAGAAAGAAGCTGCCGGCCATACACGTGGCAGGGGCAGCAGTACTGACTTCCGGATaGTGGTCTTGCGGCCTTCTA +
Preference number: 4 (lower is better)
Translates to: SGPAIRKKLPAIHVAGAAVLTSG*WSCGLL
Trigger: TAGAAGGCCGCAAGACCAGCATCCGGAAGTCAGTAC...TGCTGCCCCTGCCACGTGTATGGCCGGCAGCTTCTTTCTAATGGCAGGCCCTGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000004985.11
ENSMUST00000140587.9
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
CDS-3UTR GCA 90 bp GAGGGTCCTTACAGGTGGGGTAGCTTCTACCTGGGACTCAAGCGCCTGGCAGACGTACTGACTTCCGGATaGTGGTCTTGCGGCCTTCTA +
Preference number: 4 (lower is better)
Translates to: EGPYRWGSFYLGLKRLADVLTSG*WSCGLL
Trigger: TAGAAGGCCGCAAGACCAGCATCCGGAAGTCAGTAC...GTCTGCCAGGCGCTTGAGTCCCAGGTAGAAGCTACCCCACCTGTAAGGACCCTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000004985.11
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
CDS-3UTR CCA 90 bp TTGCCCTCGGAGACCCAGTCCAGTCAGGGCCTGCCATTAGAAAGAAGCTGCCGGGACTTGGCAGGGAATTaGGGCTGCTCACTGTTTTCC +
Preference number: 4 (lower is better)
Translates to: LPSETQSSQGLPLERSCRDLAGN*GCSLFS
Trigger: GGAAAACAGTGAGCAGCCCCAATTCCCTGCCAAGTC...CCGGCAGCTTCTTTCTAATGGCAGGCCCTGACTGGACTGGGTCTCCGAGGGCAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000004985.11
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR CCA 90 bp CTTGCCCTCGGAGACCCAGTCCAGTCAGGGCCTGCCATTAGAAAGAAGCTGCCGAGGGTTTCTTGGACTTaGCAGGGAATTGGGGCTGCT +
Preference number: 4 (lower is better)
Translates to: LALGDPVQSGPAIRKKLPRVSWT*QGIGAA
Trigger: AGCAGCCCCAATTCCCTGCCAAGTCCAAGAAACCCT...CGGCAGCTTCTTTCTAATGGCAGGCCCTGACTGGACTGGGTCTCCGAGGGCAAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000004985.11
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR CCA 90 bp TCCATCAGTGAGCTCTGCTTCTGTAAGGAGAGCACCCACCATCAGCCTCTAGCGGTAAGCAGCAGGCAATaGGGGCGCTTCTGGCTGGCT +
Preference number: 4 (lower is better)
Translates to: SISELCFCKESTHHQPLAVSSRQ*GRFWLA
Trigger: AGCCAGCCAGAAGCGCCCCCATTGCCTGCTGCTTAC...CGCTAGAGGCTGATGGTGGGTGCTCTCCTTACAGAAGCAGAGCTCACTGATGGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000004985.11
CDS-3UTR CCA 90 bp AGGGTCCTTACAGGTGGGGTAGCTTCTACCTGGGACTCAAGCGCCTGGCAGACAACTACGTGGGCCCAGTaGCCATCACTGGTCTGTTTG +
Preference number: 4 (lower is better)
Translates to: RVLTGGVASTWDSSAWQTTTWAQ*PSLVCL
Trigger: CAAACAGACCAGTGATGGCCACTGGGCCCACGTAGT...TGTCTGCCAGGCGCTTGAGTCCCAGGTAGAAGCTACCCCACCTGTAAGGACCCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000004985.11
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR CCA 90 bp GATTGGTCAATATTGGGTCTTGCCCTCGGAGACCCAGTCCAGTCAGGGCCTGCCACTACGTGGGCCCAGTaGCCATCACTGGTCTGTTTG +
Preference number: 4 (lower is better)
Translates to: DWSILGLALGDPVQSGPATTWAQ*PSLVCL
Trigger: CAAACAGACCAGTGATGGCCACTGGGCCCACGTAGT...GGCAGGCCCTGACTGGACTGGGTCTCCGAGGGCAAGACCCAATATTGACCAATC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000004985.11
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR CCA 90 bp AAAGAAGCTGCCGGCCATACACGTGGCAGGGGCAGCAGAGGTTCTCATGCCTCAACTACGTGGGCCCAGTaGCCATCACTGGTCTGTTTG +
Preference number: 4 (lower is better)
Translates to: KEAAGHTRGRGSRGSHASTTWAQ*PSLVCL
Trigger: CAAACAGACCAGTGATGGCCACTGGGCCCACGTAGT...TGAGGCATGAGAACCTCTGCTGCCCCTGCCACGTGTATGGCCGGCAGCTTCTTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000004985.11
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR CCA 90 bp GCGCCTGGCAGACATCCATCTAATGTAGCAGCTGGCCAGGAAGGAAATGGGACAATGGCGCAGACTACGTaGGCCCAGTGGCCATCACTG +
Preference number: 4 (lower is better)
Translates to: APGRHPSNVAAGQEGNGTMAQTT*AQWPSL
Trigger: CAGTGATGGCCACTGGGCCCACGTAGTCTGCGCCAT...TGTCCCATTTCCTTCCTGGCCAGCTGCTACATTAGATGGATGTCTGCCAGGCGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000004985.11
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR CCA 90 bp GGTAAAAGTCTTCCAATCTGGGTGATTCGGGCAAGTGGGTGCCCCTCTCAGGATCCTCAGGGATCCAGATaGCGCAGACTACGTGGGCCC +
Preference number: 4 (lower is better)
Translates to: GKSLPIWVIRASGCPSQDPQGSR*RRLRGP
Trigger: GGGCCCACGTAGTCTGCGCCATCTGGATCCCTGAGG...ATCCTGAGAGGGGCACCCACTTGCCCGAATCACCCAGATTGGAAGACTTTTACC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000232705.2
ENSMUST00000232997.2
CDS-3UTR CCA 90 bp ATGCCATTGTCACTAAGCAAGCATTGCAAGGGCTCGCTCCCCAGTTGCAGGGCTCTTCCAGCGGGCGGGTaGAATGTTGTCGATGCCCTC +
Preference number: 4 (lower is better)
Translates to: MPLSLSKHCKGSLPSCRALPAGG*NVVDAL
Trigger: GAGGGCATCGACAACATTCCACCCGCCCGCTGGAAG...AGCCCTGCAACTGGGGAGCGAGCCCTTGCAATGCTTGCTTAGTGACAATGGCAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000232705.2
ENSMUST00000232997.2
CDS-3UTR CCA 90 bp CCAGGGGAACCACATGATTGGTCAATATTGGGTCTTGCCCTCGGAGACCCAGTCCTTCCAGCGGGCGGGTaGAATGTTGTCGATGCCCTC +
Preference number: 4 (lower is better)
Translates to: PGEPHDWSILGLALGDPVLPAGG*NVVDAL
Trigger: GAGGGCATCGACAACATTCCACCCGCCCGCTGGAAG...GACTGGGTCTCCGAGGGCAAGACCCAATATTGACCAATCATGTGGTTCCCCTGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000004985.11
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR CCA 90 bp GTCTTGCCCTCGGAGACCCAGTCCAGTCAGGGCCTGCCATTAGAAAGAAGCTGCCTTTATGGCACTGAATaGCCGCGCCCAGCCCTTTCT +
Preference number: 4 (lower is better)
Translates to: VLPSETQSSQGLPLERSCLYGTE*PRPALS
Trigger: AGAAAGGGCTGGGCGCGGCCATTCAGTGCCATAAAG...GCAGCTTCTTTCTAATGGCAGGCCCTGACTGGACTGGGTCTCCGAGGGCAAGAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000004985.11
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR CCA 90 bp TCGGAGACCCAGTCCAGTCAGGGCCTGCCATTAGAAAGAAGCTGCCGGCCATACGCCACACTTGGAGAGTaGGCCTCACAATACGCAGTC +
Preference number: 4 (lower is better)
Translates to: SETQSSQGLPLERSCRPYATLGE*ASQYAV
Trigger: GACTGCGTATTGTGAGGCCCACTCTCCAAGTGTGGC...GTATGGCCGGCAGCTTCTTTCTAATGGCAGGCCCTGACTGGACTGGGTCTCCGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000004985.11
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR CCA 90 bp CAGTCCAGTCAGGGCCTGCCATTAGAAAGAAGCTGCCGGCCATACACGTGGCAGGCCACACTTGGAGAGTaGGCCTCACAATACGCAGTC +
Preference number: 4 (lower is better)
Translates to: QSSQGLPLERSCRPYTWQATLGE*ASQYAV
Trigger: GACTGCGTATTGTGAGGCCCACTCTCCAAGTGTGGC...CTGCCACGTGTATGGCCGGCAGCTTCTTTCTAATGGCAGGCCCTGACTGGACTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000004985.11
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR CCA 90 bp GGAAGGGAAGCTCTGAGGGTTCCCGAGGGACCCTGGCACATCTCTGGGATCAATTTCACTGAGGCTCCTTaGGGAGTCGCCCTTTCTCCT +
Preference number: 4 (lower is better)
Translates to: GREALRVPEGPWHISGINFTEAP*GVALSP
Trigger: AGGAGAAAGGGCGACTCCCCAAGGAGCCTCAGTGAA...ATTGATCCCAGAGATGTGCCAGGGTCCCTCGGGAACCCTCAGAGCTTCCCTTCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000004985.11
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR CCA 90 bp CGAGGGACCCTGGCACATCTCTGGGATCAATGTCAGAACCTTGCCTGCCCTGAGTTCACTGAGGCTCCTTaGGGAGTCGCCCTTTCTCCT +
Preference number: 4 (lower is better)
Translates to: RGTLAHLWDQCQNLACPEFTEAP*GVALSP
Trigger: AGGAGAAAGGGCGACTCCCCAAGGAGCCTCAGTGAA...CTCAGGGCAGGCAAGGTTCTGACATTGATCCCAGAGATGTGCCAGGGTCCCTCG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000004985.11
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR CCA 90 bp CAAGCGCCTGGCAGACATCCATCTAATGTAGCAGCTGGCCAGGAAGGAAATGGGCCACCTTGGCCTTCCTaGCCCTCCTCCTCAGCTTCT +
Preference number: 4 (lower is better)
Translates to: QAPGRHPSNVAAGQEGNGPPWPS*PSSSAS
Trigger: AGAAGCTGAGGAGGAGGGCCAGGAAGGCCAAGGTGG...CCCATTTCCTTCCTGGCCAGCTGCTACATTAGATGGATGTCTGCCAGGCGCTTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000004985.11
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR CCA 90 bp CAGGGCCTGCCATTAGAAAGAAGCTGCCGGCCATACACGTGGCAGGGGCAGCAGTGCTCAGCATTTCTCTaGGACTGTAAGTGGGAGTGC +
Preference number: 4 (lower is better)
Translates to: QGLPLERSCRPYTWQGQQCSAFL*DCKWEC
Trigger: GCACTCCCACTTACAGTCCCAGAGAAATGCTGAGCA...CTGCTGCCCCTGCCACGTGTATGGCCGGCAGCTTCTTTCTAATGGCAGGCCCTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000004985.11
ENSMUST00000156029.8
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR CCA 90 bp GGTCAATATTGGGTCTTGCCCTCGGAGACCCAGTCCAGTCAGGGCCTGCCATTAGGTGATTCGGGCAAGTaGGTGCCCCTCTCAGGATCA +
Preference number: 4 (lower is better)
Translates to: GQYWVLPSETQSSQGLPLGDSGK*VPLSGS
Trigger: TGATCCTGAGAGGGGCACCCACTTGCCCGAATCACC...TAATGGCAGGCCCTGACTGGACTGGGTCTCCGAGGGCAAGACCCAATATTGACC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000004985.11
ENSMUST00000156029.8
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR CCA 90 bp AGCAGCCCTCCAGGGGAACCACATGATTGGTCAATATTGGGTCTTGCCCTCGGACACACGAGACAGGGCTaGCTTCCCACGGCTGCGTTT +
Preference number: 4 (lower is better)
Translates to: SSPPGEPHDWSILGLALGHTRQG*LPTAAF
Trigger: AAACGCAGCCGTGGGAAGCCAGCCCTGTCTCGTGTG...TCCGAGGGCAAGACCCAATATTGACCAATCATGTGGTTCCCCTGGAGGGCTGCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000004985.11
ENSMUST00000156029.8
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR CCA 90 bp ATTAGAAAGAAGCTGCCGGCCATACACGTGGCAGGGGCAGCAGAGGTTCTCATGGTGGAGGGACAGGGATaGGGACACCGTTGTGCAGGA +
Preference number: 4 (lower is better)
Translates to: IRKKLPAIHVAGAAEVLMVEGQG*GHRCAG
Trigger: TCCTGCACAACGGTGTCCCCATCCCTGTCCCTCCAC...CATGAGAACCTCTGCTGCCCCTGCCACGTGTATGGCCGGCAGCTTCTTTCTAAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000004985.11
ENSMUST00000140587.9
ENSMUST00000156029.8
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
CDS-3UTR CCA 90 bp TCCCGAGGGACCCTGGCACATCTCTGGGATCAATGTCAGAACCTTGCCTGCCCTCTGACTTCCGGATGCTaGTCTTGCGGCCTTCTAGCA +
Preference number: 4 (lower is better)
Translates to: SRGTLAHLWDQCQNLACPLTSGC*SCGLLA
Trigger: TGCTAGAAGGCCGCAAGACCAGCATCCGGAAGTCAG...AGGGCAGGCAAGGTTCTGACATTGATCCCAGAGATGTGCCAGGGTCCCTCGGGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000004985.11
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
3UTR CAA 72 bp CTCCAGGGGAACCACATGATTGGTCAATATTGGGTCTaGCCCTCGGAGACCCAGTCCAGTCAGGGCCTGCCA +
Preference number: 4 (lower is better)
Translates to: LQGNHMIGQYWV*PSETQSSQGLP
Trigger: TGGCAGGCCCTGACTGGACTGGGTCTCCGAGGGCAAGACCCAATATTGACCAATCATGTGGTTCCCCTGGAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 10 transcripts:
ENSMUST00000004985.11
ENSMUST00000140973.9
ENSMUST00000156029.8
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
3UTR CAA 72 bp ACCTCTCCCCTTCACTGTCACTACAGCTCCGGCTCCTaGGCCGCTTCCGGGAATAGTGTTCATCCTCTGTGC +
Preference number: 4 (lower is better)
Translates to: TSPLHCHYSSGS*AASGNSVHPLC
Trigger: GCACAGAGGATGAACACTATTCCCGGAAGCGGCCAAGGAGCCGGAGCTGTAGTGACAGTGAAGGGGAGAGGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000232705.2
ENSMUST00000232997.2
CDS-3UTR TCA 90 bp GCCCTGTGCCACAGCAGATCCGAGCCGCATCCTGTCCTAAAAGAGCAGTTTTTACTCGGCATTCTGCCGTaGCTTTCGGCGAGGCTTCCT +
Preference number: 4 (lower is better)
Translates to: ALCHSRSEPHPVLKEQFLLGILP*LSARLP
Trigger: AGGAAGCCTCGCCGAAAGTCACGGCAGAATGCCGAG...TAAAAACTGCTCTTTTAGGACAGGATGCGGCTCGGATCTGCTGTGGCACAGGGC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000004985.11
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233709.2
CDS-3UTR TCA 90 bp TTGGGTCTTGCCCTCGGAGACCCAGTCCAGTCAGGGCCTGCCATTAGAAAGAAGGGTCTCCCGTGTGGGTaGGCACTTAAGACTGTATGG +
Preference number: 4 (lower is better)
Translates to: LGLALGDPVQSGPAIRKKGLPCG*ALKTVW
Trigger: CCATACAGTCTTAAGTGCTCACCCACACGGGAGACC...CTTCTTTCTAATGGCAGGCCCTGACTGGACTGGGTCTCCGAGGGCAAGACCCAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000004985.11
ENSMUST00000232705.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR TCA 90 bp GGGACCCTGGCACATCTCTGGGATCAATGTCAGAACCTTGCCTGCCCTGAGGTAGGTCTCCCGTGTGGGTaGGCACTTAAGACTGTATGG +
Preference number: 4 (lower is better)
Translates to: GTLAHLWDQCQNLACPEVGLPCG*ALKTVW
Trigger: CCATACAGTCTTAAGTGCTCACCCACACGGGAGACC...TACCTCAGGGCAGGCAAGGTTCTGACATTGATCCCAGAGATGTGCCAGGGTCCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000004985.11
ENSMUST00000232705.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR TCA 90 bp GAAAGAAGCTGCCGGCCATACACGTGGCAGGGGCAGCAGAGGTTCTCATGCCTCCATCACTGGTCTGTTTaGAGGCCCCACCTTTATTGG +
Preference number: 4 (lower is better)
Translates to: ERSCRPYTWQGQQRFSCLHHWSV*RPHLYW
Trigger: CCAATAAAGGTGGGGCCTTCAAACAGACCAGTGATG...GAGGCATGAGAACCTCTGCTGCCCCTGCCACGTGTATGGCCGGCAGCTTCTTTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000004985.11
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR TCA 90 bp ATTAGAAAGAAGCTGCCGGCCATACACGTGGCAGGGGCAGCAGAGGTTCTCATGTGGGTTCAATCTTCATaGAGAGCCCAGCCCGCTGCG +
Preference number: 4 (lower is better)
Translates to: IRKKLPAIHVAGAAEVLMWVQSS*RAQPAA
Trigger: CGCAGCGGGCTGGGCTCTTCATGAAGATTGAACCCA...CATGAGAACCTCTGCTGCCCCTGCCACGTGTATGGCCGGCAGCTTCTTTCTAAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000004985.11
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR TCA 90 bp TCAGGGCCTGCCATTAGAAAGAAGCTGCCGGCCATACACGTGGCAGGGGCAGCAAACTGGGTCTTCCTCTaGAAGGAGAGACCACTACAG +
Preference number: 4 (lower is better)
Translates to: SGPAIRKKLPAIHVAGAANWVFL*KERPLQ
Trigger: CTGTAGTGGTCTCTCCTTTCAGAGGAAGACCCAGTT...TGCTGCCCCTGCCACGTGTATGGCCGGCAGCTTCTTTCTAATGGCAGGCCCTGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000004985.11
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR TCA 90 bp GAAAGAAGCTGCCGGCCATACACGTGGCAGGGGCAGCAGAGGTTCTCATGCCTCAACTGGGTCTTCCTCTaGAAGGAGAGACCACTACAG +
Preference number: 4 (lower is better)
Translates to: ERSCRPYTWQGQQRFSCLNWVFL*KERPLQ
Trigger: CTGTAGTGGTCTCTCCTTTCAGAGGAAGACCCAGTT...GAGGCATGAGAACCTCTGCTGCCCCTGCCACGTGTATGGCCGGCAGCTTCTTTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000004985.11
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR TCA 90 bp GAGGGTCCTTACAGGTGGGGTAGCTTCTACCTGGGACTCAAGCGCCTGGCAGACAACTGGGTCTTCCTCTaGAAGGAGAGACCACTACAG +
Preference number: 4 (lower is better)
Translates to: EGPYRWGSFYLGLKRLADNWVFL*KERPLQ
Trigger: CTGTAGTGGTCTCTCCTTTCAGAGGAAGACCCAGTT...GTCTGCCAGGCGCTTGAGTCCCAGGTAGAAGCTACCCCACCTGTAAGGACCCTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000004985.11
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR TCA 90 bp CGAGGGACCCTGGCACATCTCTGGGATCAATGTCAGAACCTTGCCTGCCCTGAGTGTGAAGCCGCTGCATaGACTGGGTCTTCCTCTGAA +
Preference number: 4 (lower is better)
Translates to: RGTLAHLWDQCQNLACPECEAAA*TGSSSE
Trigger: TTCAGAGGAAGACCCAGTTCATGCAGCGGCTTCACA...CTCAGGGCAGGCAAGGTTCTGACATTGATCCCAGAGATGTGCCAGGGTCCCTCG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000004985.11
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR TCA 90 bp CTGACCAGCTACCTGGGGATAGGGGGACGTGTCGGCTCCTTGATTAGGCTGTGCGTTTCTGCCAGTATTTaGGCTCCTCCTTCACTGCAC +
Preference number: 4 (lower is better)
Translates to: LTSYLGIGGRVGSLIRLCVSASI*APPSLH
Trigger: GTGCAGTGAAGGAGGAGCTCAAATACTGGCAGAAAC...GCACAGCCTAATCAAGGAGCCGACACGTCCCCCTATCCCCAGGTAGCTGGTCAG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 6 transcripts:
ENSMUST00000004985.11
ENSMUST00000156029.8
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233709.2
CDS-3UTR TCA 90 bp GAAAGAAGCTGCCGGCCATACACGTGGCAGGGGCAGCAGAGGTTCTCATGCCTCGTTTCTGCCAGTATTTaGGCTCCTCCTTCACTGCAC +
Preference number: 4 (lower is better)
Translates to: ERSCRPYTWQGQQRFSCLVSASI*APPSLH
Trigger: GTGCAGTGAAGGAGGAGCTCAAATACTGGCAGAAAC...GAGGCATGAGAACCTCTGCTGCCCCTGCCACGTGTATGGCCGGCAGCTTCTTTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000004985.11
ENSMUST00000156029.8
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR TCA 90 bp GTCCAGTCAGGGCCTGCCATTAGAAAGAAGCTGCCGGCCATACACGTGGCAGGGGAACCTCACTCAGGCTaGCAGGTTCAGCAAAGATGT +
Preference number: 4 (lower is better)
Translates to: VQSGPAIRKKLPAIHVAGEPHSG*QVQQRC
Trigger: ACATCTTTGCTGAACCTGTCAGCCTGAGTGAGGTTC...CCCTGCCACGTGTATGGCCGGCAGCTTCTTTCTAATGGCAGGCCCTGACTGGAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000004985.11
ENSMUST00000156029.8
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR TCA 90 bp AGTCAGGGCCTGCCATTAGAAAGAAGCTGCCGGCCATACACGTGGCAGGGGCAGGAACCTCACTCAGGCTaGCAGGTTCAGCAAAGATGT +
Preference number: 4 (lower is better)
Translates to: SQGLPLERSCRPYTWQGQEPHSG*QVQQRC
Trigger: ACATCTTTGCTGAACCTGTCAGCCTGAGTGAGGTTC...CTGCCCCTGCCACGTGTATGGCCGGCAGCTTCTTTCTAATGGCAGGCCCTGACT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000004985.11
ENSMUST00000156029.8
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR TCA 90 bp TACAGTTATGTACACCACGCCCTGTCCCGCGTGGCTGTGCTGTTTGCTGGACAGAAGGTGTGGTACAGGTaGGATTCCAGCTTCCGCCTC +
Preference number: 4 (lower is better)
Translates to: YSYVHHALSRVAVLFAGQKVWYR*DSSFRL
Trigger: GAGGCGGAAGCTGGAATCTCACCTGTACCACACCTT...CTGTCCAGCAAACAGCACAGCCACGCGGGACAGGGCGTGGTGTACATAACTGTA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000004985.11
ENSMUST00000156029.8
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233709.2
CDS-3UTR TCA 90 bp TGGTCAATATTGGGTCTTGCCCTCGGAGACCCAGTCCAGTCAGGGCCTGCCATTAAGGTTTGCTGTCGCTaGTGGGTTTCAGGGTTGGGG +
Preference number: 4 (lower is better)
Translates to: WSILGLALGDPVQSGPAIKVCCR*WVSGLG
Trigger: CCCCAACCCTGAAACCCATCAGCGACAGCAAACCTT...AATGGCAGGCCCTGACTGGACTGGGTCTCCGAGGGCAAGACCCAATATTGACCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000004985.11
ENSMUST00000156029.8
ENSMUST00000233701.2
CDS-3UTR TCA 90 bp GGTCAATATTGGGTCTTGCCCTCGGAGACCCAGTCCAGTCAGGGCCTGCCATTACATTCTTGGCCTTCTTaGAGAGGACGGAGGTTCGGC +
Preference number: 4 (lower is better)
Translates to: GQYWVLPSETQSSQGLPLHSWPS*RGRRFG
Trigger: GCCGAACCTCCGTCCTCTTCAAGAAGGCCAAGAATG...TAATGGCAGGCCCTGACTGGACTGGGTCTCCGAGGGCAAGACCCAATATTGACC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000004985.11
ENSMUST00000156029.8
ENSMUST00000233701.2
CDS-3UTR TCA 90 bp ACGTGGCAGGGGCAGCAGAGGTTCTCATGCCTCAGGGACAGAGGAGAGGCAAAGATAGGCCACTTGTACTaGCTTCCGGATGCTGGTCTT +
Preference number: 4 (lower is better)
Translates to: TWQGQQRFSCLRDRGEAKIGHLY*LPDAGL
Trigger: AAGACCAGCATCCGGAAGTCAGTACAAGTGGCCTAT...CTTTGCCTCTCCTCTGTCCCTGAGGCATGAGAACCTCTGCTGCCCCTGCCACGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000004985.11
ENSMUST00000140587.9
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
CDS-3UTR TCA 90 bp CTGACCAGCTACCTGGGGATAGGGGGACGTGTCGGCTCCTTGATTAGGCTGTGCATAGGCCACTTGTACTaGCTTCCGGATGCTGGTCTT +
Preference number: 4 (lower is better)
Translates to: LTSYLGIGGRVGSLIRLCIGHLY*LPDAGL
Trigger: AAGACCAGCATCCGGAAGTCAGTACAAGTGGCCTAT...GCACAGCCTAATCAAGGAGCCGACACGTCCCCCTATCCCCAGGTAGCTGGTCAG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000004985.11
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
CDS-3UTR GCA 90 bp CTTGCCCTCGGAGACCCAGTCCAGTCAGGGCCTGCCATTAGAAAGAAGCTGCCGGCAGGGAATTGGGGCTaGTCACTGTTTTCCTTGTTG +
Preference number: 4 (lower is better)
Translates to: LALGDPVQSGPAIRKKLPAGNWG*SLFSLL
Trigger: CAACAAGGAAAACAGTGAGCAGCCCCAATTCCCTGC...CGGCAGCTTCTTTCTAATGGCAGGCCCTGACTGGACTGGGTCTCCGAGGGCAAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000004985.11
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR GCA 90 bp TTGCCCTCGGAGACCCAGTCCAGTCAGGGCCTGCCATTAGAAAGAAGCTGCCGGGCAGGGAATTGGGGCTaGTCACTGTTTTCCTTGTTG +
Preference number: 4 (lower is better)
Translates to: LPSETQSSQGLPLERSCRAGNWG*SLFSLL
Trigger: CAACAAGGAAAACAGTGAGCAGCCCCAATTCCCTGC...CCGGCAGCTTCTTTCTAATGGCAGGCCCTGACTGGACTGGGTCTCCGAGGGCAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000004985.11
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR GCA 90 bp GGCAGACATCCATCTAATGTAGCAGCTGGCCAGGAAGGAAATGGGACATCAAAGACTGCTGGGCCCCACTaGTGCGGCTCTCCAGGTAGG +
Preference number: 4 (lower is better)
Translates to: GRHPSNVAAGQEGNGTSKTAGPH*CGSPGR
Trigger: CCTACCTGGAGAGCCGCAGCAGTGGGGCCCAGCAGT...CTTTGATGTCCCATTTCCTTCCTGGCCAGCTGCTACATTAGATGGATGTCTGCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000004985.11
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR GCA 90 bp GTGATGTTGCTGTCAGTTTGGCACAAGGGAGAGCAGAGAGCAATGAGGGAAGGGGGACGAGAGGGAGACTaGAGGCAGCAGCGACATAGC +
Preference number: 4 (lower is better)
Translates to: VMLLSVWHKGEQRAMREGGREGD*RQQRHS
Trigger: GCTATGTCGCTGCTGCCTGCAGTCTCCCTCTCGTCC...CCCTTCCCTCATTGCTCTCTGCTCTCCCTTGTGCCAAACTGACAGCAACATCAC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 7 transcripts:
ENSMUST00000004985.11
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR GCA 90 bp GTCTTGCCCTCGGAGACCCAGTCCAGTCAGGGCCTGCCATTAGAAAGAAGCTGCGAGCTCCTCCTTCACTaGACTAGTCTTCTCGTCCTG +
Preference number: 4 (lower is better)
Translates to: VLPSETQSSQGLPLERSCELLLH*TSLLVL
Trigger: CAGGACGAGAAGACTAGTGCAGTGAAGGAGGAGCTC...GCAGCTTCTTTCTAATGGCAGGCCCTGACTGGACTGGGTCTCCGAGGGCAAGAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000004985.11
ENSMUST00000156029.8
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR GCA 90 bp CCCTTCACTGTCACTACAGCTCCGGCTCCTTGGCCGCTTCCGGGAATAGTGTTCTGCTGTACTTTGACCTaGTCCCGCTTGAGCTTCTCC +
Preference number: 4 (lower is better)
Translates to: PFTVTTAPAPWPLPGIVFCCTLT*SRLSFS
Trigger: GGAGAAGCTCAAGCGGGAGCAGGTCAAAGTACAGCA...GAACACTATTCCCGGAAGCGGCCAAGGAGCCGGAGCTGTAGTGACAGTGAAGGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000232705.2
ENSMUST00000232997.2
CDS-3UTR GCA 90 bp GATTGGTCAATATTGGGTCTTGCCCTCGGAGACCCAGTCCAGTCAGGGCCTGCCTGCTGTACTTTGACCTaGTCCCGCTTGAGCTTCTCC +
Preference number: 4 (lower is better)
Translates to: DWSILGLALGDPVQSGPACCTLT*SRLSFS
Trigger: GGAGAAGCTCAAGCGGGAGCAGGTCAAAGTACAGCA...GGCAGGCCCTGACTGGACTGGGTCTCCGAGGGCAAGACCCAATATTGACCAATC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000004985.11
ENSMUST00000156029.8
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR GCA 90 bp TCCCGAGGGACCCTGGCACATCTCTGGGATCAATGTCAGAACCTTGCCTGCCCTTGCTGTACTTTGACCTaGTCCCGCTTGAGCTTCTCC +
Preference number: 4 (lower is better)
Translates to: SRGTLAHLWDQCQNLACPCCTLT*SRLSFS
Trigger: GGAGAAGCTCAAGCGGGAGCAGGTCAAAGTACAGCA...AGGGCAGGCAAGGTTCTGACATTGATCCCAGAGATGTGCCAGGGTCCCTCGGGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000004985.11
ENSMUST00000156029.8
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR GCA 90 bp CAAGCGCCTGGCAGACATCCATCTAATGTAGCAGCTGGCCAGGAAGGAAATGGGCAGTTCCTTCAGCTGTaGCTCTGGGGACAGATGGGC +
Preference number: 4 (lower is better)
Translates to: QAPGRHPSNVAAGQEGNGQFLQL*LWGQMG
Trigger: GCCCATCTGTCCCCAGAGGCACAGCTGAAGGAACTG...CCCATTTCCTTCCTGGCCAGCTGCTACATTAGATGGATGTCTGCCAGGCGCTTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000004985.11
ENSMUST00000156029.8
ENSMUST00000233701.2
CDS-3UTR GCA 90 bp GCAAAGAAGGCAGACACAGGCCCAGCTCGGCTCTCACAGGTAGCTGGAAGTGACTCACTAAGCAAGCATTaGAAGGGCTCGCTCCCCAGT +
Preference number: 4 (lower is better)
Translates to: AKKADTGPARLSQVAGSDSLSKH*KGSLPS
Trigger: ACTGGGGAGCGAGCCCTTGCAATGCTTGCTTAGTGA...GTCACTTCCAGCTACCTGTGAGAGCCGAGCTGGGCCTGTGTCTGCCTTCTTTGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000156029.8
ENSMUST00000233701.2
CDS-3UTR GCA 90 bp GCCCTCTTGGTGAGTTTTGTTGGTTCCCTTTTAAACTCTGGCTCGAGTCCCAAAATGGGGACACCGTTGTaGAGGAGGCCCTCCCGGGGC +
Preference number: 4 (lower is better)
Translates to: ALLVSFVGSLLNSGSSPKMGTPL*RRPSRG
Trigger: GCCCCGGGAGGGCCTCCTGCACAACGGTGTCCCCAT...TTTGGGACTCGAGCCAGAGTTTAAAAGGGAACCAACAAAACTCACCAAGAGGGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 20 nt.
Matches the following 5 transcripts:
ENSMUST00000004985.11
ENSMUST00000156029.8
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
CDS-3UTR GCA 90 bp AGAGCAGAAGCCTCTGAGAGCTGCGTTGGCTTGTCAGTCAGCTTTCCTCATTCAGCCTCTGCCTGCTTCTaGTCGCCCAGCTTCAGCACG +
Preference number: 4 (lower is better)
Translates to: RAEASESCVGLSVSFPHSASACF*SPSFST
Trigger: CGTGCTGAAGCTGGGCGAGCAGAAGCAGGCAGAGGC...TGAATGAGGAAAGCTGACTGACAAGCCAACGCAGCTCTCAGAGGCTTCTGCTCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000004985.11
ENSMUST00000156029.8
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
CDS-3UTR GCA 90 bp GGGAACCACATGATTGGTCAATATTGGGTCTTGCCCTCGGAGACCCAGTCCAGTTCTCCAGCCTCTGCCTaGTTCTGCTCGCCCAGCTTC +
Preference number: 4 (lower is better)
Translates to: GNHMIGQYWVLPSETQSSSPASA*FCSPSF
Trigger: GAAGCTGGGCGAGCAGAAGCAGGCAGAGGCTGGAGA...ACTGGACTGGGTCTCCGAGGGCAAGACCCAATATTGACCAATCATGTGGTTCCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000004985.11
ENSMUST00000156029.8
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
CDS-3UTR CCA 90 bp GCCCTGTGCCACAGCAGATCCGAGCCGCATCCTGTCCTAAAAGAGCAGTTTTTAAAGACTGTATGGGGATaGGGATCTCCGGCCCTCGGC +
Preference number: 4 (lower is better)
Translates to: ALCHSRSEPHPVLKEQFLKTVWG*GSPALG
Trigger: GCCGAGGGCCGGAGATCCCCATCCCCATACAGTCTT...TAAAAACTGCTCTTTTAGGACAGGATGCGGCTCGGATCTGCTGTGGCACAGGGC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000004985.11
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233709.2
CDS-3UTR CCA 90 bp ATTGGTCAATATTGGGTCTTGCCCTCGGAGACCCAGTCCAGTCAGGGCCTGCCAGCACTTAAGACTGTATaGGGATGGGGATCTCCGGCC +
Preference number: 4 (lower is better)
Translates to: IGQYWVLPSETQSSQGLPALKTV*GWGSPA
Trigger: GGCCGGAGATCCCCATCCCCATACAGTCTTAAGTGC...TGGCAGGCCCTGACTGGACTGGGTCTCCGAGGGCAAGACCCAATATTGACCAAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000004985.11
ENSMUST00000232705.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR CCA 90 bp CCTGCCATTAGAAAGAAGCTGCCGGCCATACACGTGGCAGGGGCAGCAGAGGTTAGGGTTTCTTGGACTTaGCAGGGAATTGGGGCTGCT +
Preference number: 4 (lower is better)
Translates to: PAIRKKLPAIHVAGAAEVRVSWT*QGIGAA
Trigger: AGCAGCCCCAATTCCCTGCCAAGTCCAAGAAACCCT...AACCTCTGCTGCCCCTGCCACGTGTATGGCCGGCAGCTTCTTTCTAATGGCAGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000004985.11
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR CCA 90 bp TGCCACAGCAGATCCGAGCCGCATCCTGTCCTAAAAGAGCAGTTTTTAAAGTGGCTGGGCTGGGGGAGGTaGAAGGAGGTACCGGACGCA +
Preference number: 4 (lower is better)
Translates to: CHSRSEPHPVLKEQFLKWLGWGR*KEVPDA
Trigger: TGCGTCCGGTACCTCCTTCCACCTCCCCCAGCCCAG...CCACTTTAAAAACTGCTCTTTTAGGACAGGATGCGGCTCGGATCTGCTGTGGCA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 5 transcripts:
ENSMUST00000004985.11
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233709.2
CDS-3UTR CCA 90 bp CAATATTGGGTCTTGCCCTCGGAGACCCAGTCCAGTCAGGGCCTGCCATTAGAAACACGAAAGCTGGGCTaGGGGAGGTGGAAGGAGGTA +
Preference number: 4 (lower is better)
Translates to: QYWVLPSETQSSQGLPLETRKLG*GRWKEV
Trigger: TACCTCCTTCCACCTCCCCCAGCCCAGCTTTCGTGT...TTCTAATGGCAGGCCCTGACTGGACTGGGTCTCCGAGGGCAAGACCCAATATTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000004985.11
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR CCA 90 bp CTTGCCCTCGGAGACCCAGTCCAGTCAGGGCCTGCCATTAGAAAGAAGCTGCCGTGCTCAGCATTTCTCTaGGACTGTAAGTGGGAGTGC +
Preference number: 4 (lower is better)
Translates to: LALGDPVQSGPAIRKKLPCSAFL*DCKWEC
Trigger: GCACTCCCACTTACAGTCCCAGAGAAATGCTGAGCA...CGGCAGCTTCTTTCTAATGGCAGGCCCTGACTGGACTGGGTCTCCGAGGGCAAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000004985.11
ENSMUST00000156029.8
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR CCA 90 bp GGAGAGGCAAAGAAGGCAGACACAGGCCCAGCTCGGCTCTCACAGGTAGCTGGATGCTCAGCATTTCTCTaGGACTGTAAGTGGGAGTGC +
Preference number: 4 (lower is better)
Translates to: GEAKKADTGPARLSQVAGCSAFL*DCKWEC
Trigger: GCACTCCCACTTACAGTCCCAGAGAAATGCTGAGCA...TCCAGCTACCTGTGAGAGCCGAGCTGGGCCTGTGTCTGCCTTCTTTGCCTCTCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000156029.8
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR CCA 90 bp TGGGGGAAGGGAAGCTCTGAGGGTTCCCGAGGGACCCTGGCACATCTCTGGGATGAATTCCAGGTAATCTaGAACCTCACTCAGGCTGAC +
Preference number: 4 (lower is better)
Translates to: WGKGSSEGSRGTLAHLWDEFQVI*NLTQAD
Trigger: GTCAGCCTGAGTGAGGTTCCAGATTACCTGGAATTC...ATCCCAGAGATGTGCCAGGGTCCCTCGGGAACCCTCAGAGCTTCCCTTCCCCCA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 6 transcripts:
ENSMUST00000004985.11
ENSMUST00000156029.8
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR CCA 90 bp GGGAGGGTCCTTACAGGTGGGGTAGCTTCTACCTGGGACTCAAGCGCCTGGCAGCGGACAGCTGCTCGGTaGAAAATTGTGTCTTTAGCA +
Preference number: 4 (lower is better)
Translates to: GRVLTGGVASTWDSSAWQRTAAR*KIVSLA
Trigger: TGCTAAAGACACAATTTTCCACCGAGCAGCTGTCCG...CTGCCAGGCGCTTGAGTCCCAGGTAGAAGCTACCCCACCTGTAAGGACCCTCCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000004985.11
ENSMUST00000156029.8
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR CCA 90 bp AGCCCTCCAGGGGAACCACATGATTGGTCAATATTGGGTCTTGCCCTCGGAGACGGTGATTCGGGCAAGTaGGTGCCCCTCTCAGGATCA +
Preference number: 4 (lower is better)
Translates to: SPPGEPHDWSILGLALGDGDSGK*VPLSGS
Trigger: TGATCCTGAGAGGGGCACCCACTTGCCCGAATCACC...GTCTCCGAGGGCAAGACCCAATATTGACCAATCATGTGGTTCCCCTGGAGGGCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000004985.11
ENSMUST00000156029.8
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR CCA 90 bp GGCCTGCCATTAGAAAGAAGCTGCCGGCCATACACGTGGCAGGGGCAGCAGAGGAAAAGTCTTCCAATCTaGGTGATTCGGGCAAGTGGG +
Preference number: 4 (lower is better)
Translates to: GLPLERSCRPYTWQGQQRKSLPI*VIRASG
Trigger: CCCACTTGCCCGAATCACCCAGATTGGAAGACTTTT...CCTCTGCTGCCCCTGCCACGTGTATGGCCGGCAGCTTCTTTCTAATGGCAGGCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000004985.11
ENSMUST00000156029.8
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR CCA 90 bp GGGACCCTGGCACATCTCTGGGATCAATGTCAGAACCTTGCCTGCCCTGAGGTAGATGGGTTTCAGGGTTaGGGGATCTGGAGGGGATTC +
Preference number: 4 (lower is better)
Translates to: GTLAHLWDQCQNLACPEVDGFQG*GIWRGF
Trigger: GAATCCCCTCCAGATCCCCCAACCCTGAAACCCATC...TACCTCAGGGCAGGCAAGGTTCTGACATTGATCCCAGAGATGTGCCAGGGTCCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000004985.11
ENSMUST00000156029.8
ENSMUST00000233701.2
CDS-3UTR CCA 90 bp CCAGGGGAACCACATGATTGGTCAATATTGGGTCTTGCCCTCGGAGACCCAGTCAGAGGGGTGTCAGGATaGCTGTCGGGGTTTGTGAGG +
Preference number: 4 (lower is better)
Translates to: PGEPHDWSILGLALGDPVRGVSG*LSGFVR
Trigger: CCTCACAAACCCCGACAGCCATCCTGACACCCCTCT...GACTGGGTCTCCGAGGGCAAGACCCAATATTGACCAATCATGTGGTTCCCCTGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000004985.11
ENSMUST00000156029.8
ENSMUST00000233701.2
CDS-3UTR CCA 90 bp CCAGGGGAACCACATGATTGGTCAATATTGGGTCTTGCCCTCGGAGACCCAGTCTCGTCCTCTGGGCCATaGTCCTCGCCATTCTCAAGG +
Preference number: 4 (lower is better)
Translates to: PGEPHDWSILGLALGDPVSSSGP*SSPFSR
Trigger: CCTTGAGAATGGCGAGGACCATGGCCCAGAGGACGA...GACTGGGTCTCCGAGGGCAAGACCCAATATTGACCAATCATGTGGTTCCCCTGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000004985.11
ENSMUST00000156029.8
ENSMUST00000233701.2
CDS-3UTR CCA 90 bp GGGACTCGGAGAGAGGGAAGGATTCCGAGACTGAAAAATAGAGACAGAGGAGATTCCCACGGCTGCGTTTaGGAGGCGTCAGGCCACTGC +
Preference number: 4 (lower is better)
Translates to: GTRREGRIPRLKNRDRGDSHGCV*EASGHC
Trigger: GCAGTGGCCTGACGCCTCCCAAACGCAGCCGTGGGA...ATCTCCTCTGTCTCTATTTTTCAGTCTCGGAATCCTTCCCTCTCTCCGAGTCCC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000004985.11
ENSMUST00000156029.8
ENSMUST00000233646.2
ENSMUST00000233709.2
CDS-3UTR CCA 90 bp GGCTGTGCTGTTTGCTGGACAGAACCTGGCCCTCTTGGTGAGTTTTGTTGGTTCCACACGAGACAGGGCTaGCTTCCCACGGCTGCGTTT +
Preference number: 4 (lower is better)
Translates to: GCAVCWTEPGPLGEFCWFHTRQG*LPTAAF
Trigger: AAACGCAGCCGTGGGAAGCCAGCCCTGTCTCGTGTG...GAACCAACAAAACTCACCAAGAGGGCCAGGTTCTGTCCAGCAAACAGCACAGCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000004985.11
ENSMUST00000156029.8
ENSMUST00000233646.2
ENSMUST00000233709.2
CDS-3UTR CCA 90 bp ATGATTGGTCAATATTGGGTCTTGCCCTCGGAGACCCAGTCCAGTCAGGGCCTGGGCTCCAGGTCTCCGTaGTCTTCAAAGGGCATCAGG +
Preference number: 4 (lower is better)
Translates to: MIGQYWVLPSETQSSQGLGSRSP*SSKGIR
Trigger: CCTGATGCCCTTTGAAGACCACGGAGACCTGGAGCC...CAGGCCCTGACTGGACTGGGTCTCCGAGGGCAAGACCCAATATTGACCAATCAT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000004985.11
ENSMUST00000156029.8
ENSMUST00000233561.2
ENSMUST00000233646.2
CDS-3UTR CCA 90 bp CAACATGGCAATTGGCGGTCTGCAAACCCGCCTGCGGCTTTGGTGCTTAAAGAAGTGGAGGGACAGGGATaGGGACACCGTTGTGCAGGA +
Preference number: 4 (lower is better)
Translates to: QHGNWRSANPPAALVLKEVEGQG*GHRCAG
Trigger: TCCTGCACAACGGTGTCCCCATCCCTGTCCCTCCAC...TTCTTTAAGCACCAAAGCCGCAGGCGGGTTTGCAGACCGCCAATTGCCATGTTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000004985.11
ENSMUST00000156029.8
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
CDS-3UTR CCA 90 bp ATTGGTCAATATTGGGTCTTGCCCTCGGAGACCCAGTCCAGTCAGGGCCTGCCACTGACTTCCGGATGCTaGTCTTGCGGCCTTCTAGCA +
Preference number: 4 (lower is better)
Translates to: IGQYWVLPSETQSSQGLPLTSGC*SCGLLA
Trigger: TGCTAGAAGGCCGCAAGACCAGCATCCGGAAGTCAG...TGGCAGGCCCTGACTGGACTGGGTCTCCGAGGGCAAGACCCAATATTGACCAAT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000004985.11
ENSMUST00000140587.9
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
CDS-3UTR TCA 90 bp CTGGCACATCTCTGGGATCAATGTCAGAACCTTGCCTGCCCTGAGGTATGGTTACTCGGCATTCTGCCGTaGCTTTCGGCGAGGCTTCCT +
Preference number: 4 (lower is better)
Translates to: LAHLWDQCQNLACPEVWLLGILP*LSARLP
Trigger: AGGAAGCCTCGCCGAAAGTCACGGCAGAATGCCGAG...TAACCATACCTCAGGGCAGGCAAGGTTCTGACATTGATCCCAGAGATGTGCCAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000004985.11
ENSMUST00000232705.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR TCA 90 bp AAAGAAGCTGCCGGCCATACACGTGGCAGGGGCAGCAGAGGTTCTCATGCCTCACATCACTGGTCTGTTTaGAGGCCCCACCTTTATTGG +
Preference number: 4 (lower is better)
Translates to: KEAAGHTRGRGSRGSHASHHWSV*RPHLYW
Trigger: CCAATAAAGGTGGGGCCTTCAAACAGACCAGTGATG...TGAGGCATGAGAACCTCTGCTGCCCCTGCCACGTGTATGGCCGGCAGCTTCTTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000004985.11
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR TCA 90 bp GTGATGTTGCTGTCAGTTTGGCACAAGGGAGAGCAGAGAGCAATGAGGGAAGGGTGGGTTCAATCTTCATaGAGAGCCCAGCCCGCTGCG +
Preference number: 4 (lower is better)
Translates to: VMLLSVWHKGEQRAMREGWVQSS*RAQPAA
Trigger: CGCAGCGGGCTGGGCTCTTCATGAAGATTGAACCCA...CCCTTCCCTCATTGCTCTCTGCTCTCCCTTGTGCCAAACTGACAGCAACATCAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000004985.11
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR TCA 90 bp AAGGGAAGCTCTGAGGGTTCCCGAGGGACCCTGGCACATCTCTGGGATCAATGTTGTGAAGCCGCTGCATaGACTGGGTCTTCCTCTGAA +
Preference number: 4 (lower is better)
Translates to: KGSSEGSRGTLAHLWDQCCEAAA*TGSSSE
Trigger: TTCAGAGGAAGACCCAGTTCATGCAGCGGCTTCACA...ACATTGATCCCAGAGATGTGCCAGGGTCCCTCGGGAACCCTCAGAGCTTCCCTT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000004985.11
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR TCA 90 bp TTGTCCCTTGGAAGCCACTGCCTGCCAGCTTCAAACGCCAGTCCTCCACTGAGATGTGAAGCCGCTGCATaGACTGGGTCTTCCTCTGAA +
Preference number: 4 (lower is better)
Translates to: LSLGSHCLPASNASPPLRCEAAA*TGSSSE
Trigger: TTCAGAGGAAGACCCAGTTCATGCAGCGGCTTCACA...TCTCAGTGGAGGACTGGCGTTTGAAGCTGGCAGGCAGTGGCTTCCAAGGGACAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000232997.2
CDS-3UTR TCA 90 bp ATGATTGGTCAATATTGGGTCTTGCCCTCGGAGACCCAGTCCAGTCAGGGCCTGAAGGTGTGGTACAGGTaGGATTCCAGCTTCCGCCTC +
Preference number: 4 (lower is better)
Translates to: MIGQYWVLPSETQSSQGLKVWYR*DSSFRL
Trigger: GAGGCGGAAGCTGGAATCTCACCTGTACCACACCTT...CAGGCCCTGACTGGACTGGGTCTCCGAGGGCAAGACCCAATATTGACCAATCAT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000004985.11
ENSMUST00000156029.8
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR TCA 90 bp ATTGGTCAATATTGGGTCTTGCCCTCGGAGACCCAGTCCAGTCAGGGCCTGCCAGGCCTTCTAGCATCTTaGGCTTGTCCACAGTGTCCT +
Preference number: 4 (lower is better)
Translates to: IGQYWVLPSETQSSQGLPGLLAS*ACPQCP
Trigger: AGGACACTGTGGACAAGCTCAAGATGCTAGAAGGCC...TGGCAGGCCCTGACTGGACTGGGTCTCCGAGGGCAAGACCCAATATTGACCAAT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000004985.11
ENSMUST00000140587.9
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
CDS-3UTR GCA 90 bp GAGGGAAGGATTCCGAGACTGAAAAATAGAGACAGAGGAGATAGTGTTGGGGGACGGCCCTCGGCATTCTaGCGTGACTTTCGGCGAGGC +
Preference number: 4 (lower is better)
Translates to: EGRIPRLKNRDRGDSVGGRPSAF*RDFRRG
Trigger: GCCTCGCCGAAAGTCACGGCAGAATGCCGAGGGCCG...TCCCCCAACACTATCTCCTCTGTCTCTATTTTTCAGTCTCGGAATCCTTCCCTC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENSMUST00000004985.11
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233709.2
CDS-3UTR GCA 90 bp AAAGAAGCTGCCGGCCATACACGTGGCAGGGGCAGCAGAGGTTCTCATGCCTCAGCAGGGAATTGGGGCTaGTCACTGTTTTCCTTGTTG +
Preference number: 4 (lower is better)
Translates to: KEAAGHTRGRGSRGSHASAGNWG*SLFSLL
Trigger: CAACAAGGAAAACAGTGAGCAGCCCCAATTCCCTGC...TGAGGCATGAGAACCTCTGCTGCCCCTGCCACGTGTATGGCCGGCAGCTTCTTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 7 transcripts:
ENSMUST00000004985.11
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR GCA 90 bp GGAAGGGAAGCTCTGAGGGTTCCCGAGGGACCCTGGCACATCTCTGGGATCAATGCAGGGAATTGGGGCTaGTCACTGTTTTCCTTGTTG +
Preference number: 4 (lower is better)
Translates to: GREALRVPEGPWHISGINAGNWG*SLFSLL
Trigger: CAACAAGGAAAACAGTGAGCAGCCCCAATTCCCTGC...ATTGATCCCAGAGATGTGCCAGGGTCCCTCGGGAACCCTCAGAGCTTCCCTTCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000004985.11
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR GCA 90 bp TGCCACAGCAGATCCGAGCCGCATCCTGTCCTAAAAGAGCAGTTTTTAAAGTGGTCGTCGATTAGGGACTaGTGGGCCCCACTGCTGCGG +
Preference number: 4 (lower is better)
Translates to: CHSRSEPHPVLKEQFLKWSSIRD*WAPLLR
Trigger: CCGCAGCAGTGGGGCCCAGCAGTCCCTAATCGACGA...CCACTTTAAAAACTGCTCTTTTAGGACAGGATGCGGCTCGGATCTGCTGTGGCA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 5 transcripts:
ENSMUST00000004985.11
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233709.2
CDS-3UTR GCA 90 bp TTTTGGCACACAGCAGCCCTCCAGGGGAACCACATGATTGGTCAATATTGGGTCGGACGAGAGGGAGACTaGAGGCAGCAGCGACATAGC +
Preference number: 4 (lower is better)
Translates to: FWHTAALQGNHMIGQYWVGREGD*RQQRHS
Trigger: GCTATGTCGCTGCTGCCTGCAGTCTCCCTCTCGTCC...GACCCAATATTGACCAATCATGTGGTTCCCCTGGAGGGCTGCTGTGTGCCAAAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000004985.11
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR GCA 90 bp TTGGGTCTTGCCCTCGGAGACCCAGTCCAGTCAGGGCCTGCCATTAGAAAGAAGGAGCTCCTCCTTCACTaGACTAGTCTTCTCGTCCTG +
Preference number: 4 (lower is better)
Translates to: LGLALGDPVQSGPAIRKKELLLH*TSLLVL
Trigger: CAGGACGAGAAGACTAGTGCAGTGAAGGAGGAGCTC...CTTCTTTCTAATGGCAGGCCCTGACTGGACTGGGTCTCCGAGGGCAAGACCCAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000004985.11
ENSMUST00000156029.8
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR GCA 90 bp GGTCAATATTGGGTCTTGCCCTCGGAGACCCAGTCCAGTCAGGGCCTGCCATTATGCTGTACTTTGACCTaGTCCCGCTTGAGCTTCTCC +
Preference number: 4 (lower is better)
Translates to: GQYWVLPSETQSSQGLPLCCTLT*SRLSFS
Trigger: GGAGAAGCTCAAGCGGGAGCAGGTCAAAGTACAGCA...TAATGGCAGGCCCTGACTGGACTGGGTCTCCGAGGGCAAGACCCAATATTGACC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000004985.11
ENSMUST00000156029.8
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR GCA 90 bp CAATATTGGGTCTTGCCCTCGGAGACCCAGTCCAGTCAGGGCCTGCCATTAGAAAGCTCCATGGCAGCCTaGTGTACTTTGACCTGCTCC +
Preference number: 4 (lower is better)
Translates to: QYWVLPSETQSSQGLPLESSMAA*CTLTCS
Trigger: GGAGCAGGTCAAAGTACAGCAGGCTGCCATGGAGCT...TTCTAATGGCAGGCCCTGACTGGACTGGGTCTCCGAGGGCAAGACCCAATATTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000004985.11
ENSMUST00000156029.8
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR GCA 90 bp CAGGGCCTGCCATTAGAAAGAAGCTGCCGGCCATACACGTGGCAGGGGCAGCAGTTCAGCAAAGATGTGTaGAGAGTCTTTCTCCTGCAG +
Preference number: 4 (lower is better)
Translates to: QGLPLERSCRPYTWQGQQFSKDV*RVFLLQ
Trigger: CTGCAGGAGAAAGACTCTGCACACATCTTTGCTGAA...CTGCTGCCCCTGCCACGTGTATGGCCGGCAGCTTCTTTCTAATGGCAGGCCCTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000004985.11
ENSMUST00000156029.8
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR GCA 90 bp TGGGGGAAGGGAAGCTCTGAGGGTTCCCGAGGGACCCTGGCACATCTCTGGGATTTCAGCAAAGATGTGTaGAGAGTCTTTCTCCTGCAG +
Preference number: 4 (lower is better)
Translates to: WGKGSSEGSRGTLAHLWDFSKDV*RVFLLQ
Trigger: CTGCAGGAGAAAGACTCTGCACACATCTTTGCTGAA...ATCCCAGAGATGTGCCAGGGTCCCTCGGGAACCCTCAGAGCTTCCCTTCCCCCA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 8 transcripts:
ENSMUST00000004985.11
ENSMUST00000156029.8
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR GCA 90 bp AGCCCTCCAGGGGAACCACATGATTGGTCAATATTGGGTCTTGCCCTCGGAGACCGCTGGACCGCATGGTaGTCACCAGATCCAGTTTCT +
Preference number: 4 (lower is better)
Translates to: SPPGEPHDWSILGLALGDRWTAW*SPDPVS
Trigger: AGAAACTGGATCTGGTGAGCACCATGCGGTCCAGCG...GTCTCCGAGGGCAAGACCCAATATTGACCAATCATGTGGTTCCCCTGGAGGGCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000004985.11
ENSMUST00000156029.8
ENSMUST00000233701.2
CDS-3UTR GCA 90 bp GGTCAATATTGGGTCTTGCCCTCGGAGACCCAGTCCAGTCAGGGCCTGCCATTAGGCTGTGCTAGCTTTTaGCGAAGGGCATTGATCTCC +
Preference number: 4 (lower is better)
Translates to: GQYWVLPSETQSSQGLPLGCASF*RRALIS
Trigger: GGAGATCAATGCCCTTCGGCAAAAGCTAGCACAGCC...TAATGGCAGGCCCTGACTGGACTGGGTCTCCGAGGGCAAGACCCAATATTGACC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000004985.11
ENSMUST00000156029.8
ENSMUST00000233701.2
CDS-3UTR GCA 90 bp CAAGGTAGAAGTCAACATGGCAATTGGCGGTCTGCAAACCCGCCTGCGGCTTTGGCATCAGGAGGCTTCTaGCATCCTCCCAGGAGAATC +
Preference number: 4 (lower is better)
Translates to: QGRSQHGNWRSANPPAALASGGF*HPPRRI
Trigger: GATTCTCCTGGGAGGATGGCAGAAGCCTCCTGATGC...CAAAGCCGCAGGCGGGTTTGCAGACCGCCAATTGCCATGTTGACTTCTACCTTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000233561.2
CDS-3UTR CCA 90 bp CTCCAGGGGAACCACATGATTGGTCAATATTGGGTCTTGCCCTCGGAGACCCAGGCACTTAAGACTGTATaGGGATGGGGATCTCCGGCC +
Preference number: 4 (lower is better)
Translates to: LQGNHMIGQYWVLPSETQALKTV*GWGSPA
Trigger: GGCCGGAGATCCCCATCCCCATACAGTCTTAAGTGC...CTGGGTCTCCGAGGGCAAGACCCAATATTGACCAATCATGTGGTTCCCCTGGAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000004985.11
ENSMUST00000232705.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR CCA 90 bp AAGGGAAGCTCTGAGGGTTCCCGAGGGACCCTGGCACATCTCTGGGATCAATGTGACTTGGCAGGGAATTaGGGCTGCTCACTGTTTTCC +
Preference number: 4 (lower is better)
Translates to: KGSSEGSRGTLAHLWDQCDLAGN*GCSLFS
Trigger: GGAAAACAGTGAGCAGCCCCAATTCCCTGCCAAGTC...ACATTGATCCCAGAGATGTGCCAGGGTCCCTCGGGAACCCTCAGAGCTTCCCTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000004985.11
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR CCA 90 bp CCTTCTAGCATCTTGAGCTTGTCCACAGTGTCCTCCACACCCAGGGGCAGGACTAGGGTTTCTTGGACTTaGCAGGGAATTGGGGCTGCT +
Preference number: 4 (lower is better)
Translates to: PSSILSLSTVSSTPRGRTRVSWT*QGIGAA
Trigger: AGCAGCCCCAATTCCCTGCCAAGTCCAAGAAACCCT...AGTCCTGCCCCTGGGTGTGGAGGACACTGTGGACAAGCTCAAGATGCTAGAAGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR CCA 90 bp GCTGTTTCTACTTCTAAGTGGTTCTTCAGTGGAATATCCCCAGGGACCTCGGGTCCACCACACGAAAGCTaGGCTGGGGGAGGTGGAAGG +
Preference number: 4 (lower is better)
Translates to: AVSTSKWFFSGISPGTSGPPHES*AGGGGR
Trigger: CCTTCCACCTCCCCCAGCCCAGCTTTCGTGTGGTGG...ACCCGAGGTCCCTGGGGATATTCCACTGAAGAACCACTTAGAAGTAGAAACAGC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 7 transcripts:
ENSMUST00000004985.11
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR CCA 90 bp GGCAGACATCCATCTAATGTAGCAGCTGGCCAGGAAGGAAATGGGACATCAAAGCCACCACACGAAAGCTaGGCTGGGGGAGGTGGAAGG +
Preference number: 4 (lower is better)
Translates to: GRHPSNVAAGQEGNGTSKPPHES*AGGGGR
Trigger: CCTTCCACCTCCCCCAGCCCAGCTTTCGTGTGGTGG...CTTTGATGTCCCATTTCCTTCCTGGCCAGCTGCTACATTAGATGGATGTCTGCC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 7 transcripts:
ENSMUST00000004985.11
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR CCA 90 bp ATGTCAAGAGCAGAAGCCTCTGAGAGCTGCGTTGGCTTGTCAGTCAGCTTTCCTGTAAGCAGCAGGCAATaGGGGCGCTTCTGGCTGGCT +
Preference number: 4 (lower is better)
Translates to: MSRAEASESCVGLSVSFPVSSRQ*GRFWLA
Trigger: AGCCAGCCAGAAGCGCCCCCATTGCCTGCTGCTTAC...AGGAAAGCTGACTGACAAGCCAACGCAGCTCTCAGAGGCTTCTGCTCTTGACAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000004985.11
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233709.2
CDS-3UTR CCA 90 bp CTTGCCCTCGGAGACCCAGTCCAGTCAGGGCCTGCCATTAGAAAGAAGCTGCCGATGACATTGCTATTGTaGCACTCATCGTCCAGGCAC +
Preference number: 4 (lower is better)
Translates to: LALGDPVQSGPAIRKKLPMTLLL*HSSSRH
Trigger: GTGCCTGGACGATGAGTGCCACAATAGCAATGTCAT...CGGCAGCTTCTTTCTAATGGCAGGCCCTGACTGGACTGGGTCTCCGAGGGCAAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000004985.11
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR CCA 90 bp CAAGCGCCTGGCAGACATCCATCTAATGTAGCAGCTGGCCAGGAAGGAAATGGGACTACGTGGGCCCAGTaGCCATCACTGGTCTGTTTG +
Preference number: 4 (lower is better)
Translates to: QAPGRHPSNVAAGQEGNGTTWAQ*PSLVCL
Trigger: CAAACAGACCAGTGATGGCCACTGGGCCCACGTAGT...CCCATTTCCTTCCTGGCCAGCTGCTACATTAGATGGATGTCTGCCAGGCGCTTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000004985.11
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR CCA 90 bp CTGTTTCTACTTCTAAGTGGTTCTTCAGTGGAATATCCCCAGGGACCTCGGGTGCCTCAGGGATCCAGATaGCGCAGACTACGTGGGCCC +
Preference number: 4 (lower is better)
Translates to: LFLLLSGSSVEYPQGPRVPQGSR*RRLRGP
Trigger: GGGCCCACGTAGTCTGCGCCATCTGGATCCCTGAGG...CACCCGAGGTCCCTGGGGATATTCCACTGAAGAACCACTTAGAAGTAGAAACAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000004985.11
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR CCA 90 bp ATTAGAAAGAAGCTGCCGGCCATACACGTGGCAGGGGCAGCAGAGGTTCTCATGGCCACACTTGGAGAGTaGGCCTCACAATACGCAGTC +
Preference number: 4 (lower is better)
Translates to: IRKKLPAIHVAGAAEVLMATLGE*ASQYAV
Trigger: GACTGCGTATTGTGAGGCCCACTCTCCAAGTGTGGC...CATGAGAACCTCTGCTGCCCCTGCCACGTGTATGGCCGGCAGCTTCTTTCTAAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000004985.11
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR CCA 90 bp CAATATTGGGTCTTGCCCTCGGAGACCCAGTCCAGTCAGGGCCTGCCATTAGAATTCACTGAGGCTCCTTaGGGAGTCGCCCTTTCTCCT +
Preference number: 4 (lower is better)
Translates to: QYWVLPSETQSSQGLPLEFTEAP*GVALSP
Trigger: AGGAGAAAGGGCGACTCCCCAAGGAGCCTCAGTGAA...TTCTAATGGCAGGCCCTGACTGGACTGGGTCTCCGAGGGCAAGACCCAATATTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000004985.11
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR CCA 90 bp ATTGCAAGGGCTCGCTCCCCAGTTGCAGGGCTGATTTTTCTAAGAGCTCCTCATCCACCTTGGCCTTCCTaGCCCTCCTCCTCAGCTTCT +
Preference number: 4 (lower is better)
Translates to: IARARSPVAGLIFLRAPHPPWPS*PSSSAS
Trigger: AGAAGCTGAGGAGGAGGGCCAGGAAGGCCAAGGTGG...ATGAGGAGCTCTTAGAAAAATCAGCCCTGCAACTGGGGAGCGAGCCCTTGCAAT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000232705.2
ENSMUST00000232997.2
CDS-3UTR CCA 90 bp GGGACTCAAGCGCCTGGCAGACATCCATCTAATGTAGCAGCTGGCCAGGAAGGAGTAAGAGGGTATCTGTaGGACAGTGACCATGGGGAG +
Preference number: 4 (lower is better)
Translates to: GTQAPGRHPSNVAAGQEGVRGYL*DSDHGE
Trigger: CTCCCCATGGTCACTGTCCCACAGATACCCTCTTAC...TCCTTCCTGGCCAGCTGCTACATTAGATGGATGTCTGCCAGGCGCTTGAGTCCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000004985.11
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR CCA 90 bp GAGGTATGGTTAGGTGGGAGAGACATGGAGAGAGCCGGCTGGCCCCAGAAAAGCTGCTCAGCATTTCTCTaGGACTGTAAGTGGGAGTGC +
Preference number: 4 (lower is better)
Translates to: EVWLGGRDMERAGWPQKSCSAFL*DCKWEC
Trigger: GCACTCCCACTTACAGTCCCAGAGAAATGCTGAGCA...GCTTTTCTGGGGCCAGCCGGCTCTCTCCATGTCTCTCCCACCTAACCATACCTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 8 transcripts:
ENSMUST00000004985.11
ENSMUST00000156029.8
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR CCA 90 bp CAATTTGGTGATGTTGCTGTCAGTTTGGCACAAGGGAGAGCAGAGAGCAATGAGTCCCACGGCTGCGTTTaGGAGGCGTCAGGCCACTGC +
Preference number: 4 (lower is better)
Translates to: QFGDVAVSLAQGRAESNESHGCV*EASGHC
Trigger: GCAGTGGCCTGACGCCTCCCAAACGCAGCCGTGGGA...CTCATTGCTCTCTGCTCTCCCTTGTGCCAAACTGACAGCAACATCACCAAATTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000004985.11
ENSMUST00000156029.8
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
3UTR CAA 72 bp CAAGCTCTCCCAATAAACATGTGCAGAAGGATCCTGTaGCAGCGTCGTTCTTCCTGGCCAGTCGAGCGTGCG +
Preference number: 4 (lower is better)
Translates to: QALPINMCRRIL*QRRSSWPVERA
Trigger: CGCACGCTCGACTGGCCAGGAAGAACGACGCTGCAACAGGATCCTTCTGCACATGTTTATTGGGAGAGCTTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000004985.11
3UTR CAA 72 bp CTGTCGGGGTTTGTGAGGGACAGTCTGTCAATGCCATaGTCACTAAGCAAGCATTGCAAGGGCTCGCTCCCC +
Preference number: 4 (lower is better)
Translates to: LSGFVRDSLSMP*SLSKHCKGSLP
Trigger: GGGGAGCGAGCCCTTGCAATGCTTGCTTAGTGACAATGGCATTGACAGACTGTCCCTCACAAACCCCGACAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000232705.2
ENSMUST00000232997.2
CDS-3UTR TCA 90 bp GGACAGTCTGTCAATGCCATTGTCACTAAGCAAGCATTGCAAGGGCTCGCTCCCGGTCTCCCGTGTGGGTaGGCACTTAAGACTGTATGG +
Preference number: 4 (lower is better)
Translates to: GQSVNAIVTKQALQGLAPGLPCG*ALKTVW
Trigger: CCATACAGTCTTAAGTGCTCACCCACACGGGAGACC...GGGAGCGAGCCCTTGCAATGCTTGCTTAGTGACAATGGCATTGACAGACTGTCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000232705.2
CDS-3UTR TCA 90 bp GGTCAATATTGGGTCTTGCCCTCGGAGACCCAGTCCAGTCAGGGCCTGCCATTACATCACTGGTCTGTTTaGAGGCCCCACCTTTATTGG +
Preference number: 4 (lower is better)
Translates to: GQYWVLPSETQSSQGLPLHHWSV*RPHLYW
Trigger: CCAATAAAGGTGGGGCCTTCAAACAGACCAGTGATG...TAATGGCAGGCCCTGACTGGACTGGGTCTCCGAGGGCAAGACCCAATATTGACC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000004985.11
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR TCA 90 bp AAGGGAAGCTCTGAGGGTTCCCGAGGGACCCTGGCACATCTCTGGGATCAATGTCATCACTGGTCTGTTTaGAGGCCCCACCTTTATTGG +
Preference number: 4 (lower is better)
Translates to: KGSSEGSRGTLAHLWDQCHHWSV*RPHLYW
Trigger: CCAATAAAGGTGGGGCCTTCAAACAGACCAGTGATG...ACATTGATCCCAGAGATGTGCCAGGGTCCCTCGGGAACCCTCAGAGCTTCCCTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000004985.11
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR TCA 90 bp AGAGCAGAAGCCTCTGAGAGCTGCGTTGGCTTGTCAGTCAGCTTTCCTCATTCATGGGTTCAATCTTCATaGAGAGCCCAGCCCGCTGCG +
Preference number: 4 (lower is better)
Translates to: RAEASESCVGLSVSFPHSWVQSS*RAQPAA
Trigger: CGCAGCGGGCTGGGCTCTTCATGAAGATTGAACCCA...TGAATGAGGAAAGCTGACTGACAAGCCAACGCAGCTCTCAGAGGCTTCTGCTCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000004985.11
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233709.2
CDS-3UTR TCA 90 bp TCAGCTGTTTCTACTTCTAAGTGGTTCTTCAGTGGAATATCCCCAGGGACCTCGCATCCCCGACTTCACTaGGGCTCCTTGGGGAGTCGC +
Preference number: 4 (lower is better)
Translates to: SAVSTSKWFFSGISPGTSHPRLH*GSLGSR
Trigger: GCGACTCCCCAAGGAGCCTCAGTGAAGTCGGGGATG...CGAGGTCCCTGGGGATATTCCACTGAAGAACCACTTAGAAGTAGAAACAGCTGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 7 transcripts:
ENSMUST00000004985.11
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR TCA 90 bp ATTGGTCAATATTGGGTCTTGCCCTCGGAGACCCAGTCCAGTCAGGGCCTGCCAAACTGGGTCTTCCTCTaGAAGGAGAGACCACTACAG +
Preference number: 4 (lower is better)
Translates to: IGQYWVLPSETQSSQGLPNWVFL*KERPLQ
Trigger: CTGTAGTGGTCTCTCCTTTCAGAGGAAGACCCAGTT...TGGCAGGCCCTGACTGGACTGGGTCTCCGAGGGCAAGACCCAATATTGACCAAT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000004985.11
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR TCA 90 bp GGACCCTGGCACATCTCTGGGATCAATGTCAGAACCTTGCCTGCCCTGAGGTATTGTGAAGCCGCTGCATaGACTGGGTCTTCCTCTGAA +
Preference number: 4 (lower is better)
Translates to: GPWHISGINVRTLPALRYCEAAA*TGSSSE
Trigger: TTCAGAGGAAGACCCAGTTCATGCAGCGGCTTCACA...ATACCTCAGGGCAGGCAAGGTTCTGACATTGATCCCAGAGATGTGCCAGGGTCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000004985.11
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR TCA 90 bp TTGGGTCTTGCCCTCGGAGACCCAGTCCAGTCAGGGCCTGCCATTAGAAAGAAGGAACCTCACTCAGGCTaGCAGGTTCAGCAAAGATGT +
Preference number: 4 (lower is better)
Translates to: LGLALGDPVQSGPAIRKKEPHSG*QVQQRC
Trigger: ACATCTTTGCTGAACCTGTCAGCCTGAGTGAGGTTC...CTTCTTTCTAATGGCAGGCCCTGACTGGACTGGGTCTCCGAGGGCAAGACCCAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000004985.11
ENSMUST00000156029.8
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR TCA 90 bp AAGGTAGAAGTCAACATGGCAATTGGCGGTCTGCAAACCCGCCTGCGGCTTTGGGGCCTTCTAGCATCTTaGGCTTGTCCACAGTGTCCT +
Preference number: 4 (lower is better)
Translates to: KVEVNMAIGGLQTRLRLWGLLAS*ACPQCP
Trigger: AGGACACTGTGGACAAGCTCAAGATGCTAGAAGGCC...CCAAAGCCGCAGGCGGGTTTGCAGACCGCCAATTGCCATGTTGACTTCTACCTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000004985.11
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
CDS-3UTR TCA 90 bp TCCCGAGGGACCCTGGCACATCTCTGGGATCAATGTCAGAACCTTGCCTGCCCTAAACCTCACTCAGGCTaGCAGGTTCAGCAAAGATGT +
Preference number: 4 (lower is better)
Translates to: SRGTLAHLWDQCQNLACPKPHSG*QVQQRC
Trigger: ACATCTTTGCTGAACCTGTCAGCCTGAGTGAGGTTT...AGGGCAGGCAAGGTTCTGACATTGATCCCAGAGATGTGCCAGGGTCCCTCGGGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000232705.2
ENSMUST00000232997.2
CDS-3UTR GCA 90 bp GGGTTTGTGAGGGACAGTCTGTCAATGCCATTGTCACTAAGCAAGCATTGCAAGTCGTCGATTAGGGACTaGTGGGCCCCACTGCTGCGG +
Preference number: 4 (lower is better)
Translates to: GFVRDSLSMPLSLSKHCKSSIRD*WAPLLR
Trigger: CCGCAGCAGTGGGGCCCAGCAGTCCCTAATCGACGA...CTTGCAATGCTTGCTTAGTGACAATGGCATTGACAGACTGTCCCTCACAAACCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000232705.2
ENSMUST00000232997.2
CDS-3UTR GCA 90 bp CAGTCCAGTCAGGGCCTGCCATTAGAAAGAAGCTGCCGGCCATACACGTGGCAGCCAGCCCTTTCTGCTTaGAGATATAGCAGGTTAGCT +
Preference number: 4 (lower is better)
Translates to: QSSQGLPLERSCRPYTWQPALSA*RYSRLA
Trigger: AGCTAACCTGCTATATCTGCAAGCAGAAAGGGCTGG...CTGCCACGTGTATGGCCGGCAGCTTCTTTCTAATGGCAGGCCCTGACTGGACTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000004985.11
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR GCA 90 bp CGTCCTCTGGGCCATGGTCCTCGCCATTCTCAAGGGTCCCATCGGGACCCCTCTTCCTTCTTGATCTTCTaGTTCAAACTCATCTTACCC +
Preference number: 4 (lower is better)
Translates to: RPLGHGPRHSQGSHRDPSSFLIF*FKLILP
Trigger: GGGTAAGATGAGTTTGAAGCAGAAGATCAAGAAGGA...AGAGGGGTCCCGATGGGACCCTTGAGAATGGCGAGGACCATGGCCCAGAGGACG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000232705.2
ENSMUST00000232997.2
CDS-3UTR GCA 90 bp CTGGCACATCTCTGGGATCAATGTCAGAACCTTGCCTGCCCTGAGGTATGGTTATCGTCCTGCTCCCGCTaGTCAGCATTTCTCTGGGAC +
Preference number: 4 (lower is better)
Translates to: LAHLWDQCQNLACPEVWLSSCSR*SAFLWD
Trigger: GTCCCAGAGAAATGCTGAGCAGCGGGAGCAGGACGA...TAACCATACCTCAGGGCAGGCAAGGTTCTGACATTGATCCCAGAGATGTGCCAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000004985.11
ENSMUST00000156029.8
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR GCA 90 bp AGCAGCCCTCCAGGGGAACCACATGATTGGTCAATATTGGGTCTTGCCCTCGGAGAGCTCCTCCTTCACTaGACTAGTCTTCTCGTCCTG +
Preference number: 4 (lower is better)
Translates to: SSPPGEPHDWSILGLALGELLLH*TSLLVL
Trigger: CAGGACGAGAAGACTAGTGCAGTGAAGGAGGAGCTC...TCCGAGGGCAAGACCCAATATTGACCAATCATGTGGTTCCCCTGGAGGGCTGCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000004985.11
ENSMUST00000156029.8
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR GCA 90 bp CAAGGTAGAAGTCAACATGGCAATTGGCGGTCTGCAAACCCGCCTGCGGCTTTGGAGCTCCTCCTTCACTaGACTAGTCTTCTCGTCCTG +
Preference number: 4 (lower is better)
Translates to: QGRSQHGNWRSANPPAALELLLH*TSLLVL
Trigger: CAGGACGAGAAGACTAGTGCAGTGAAGGAGGAGCTC...CAAAGCCGCAGGCGGGTTTGCAGACCGCCAATTGCCATGTTGACTTCTACCTTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000004985.11
ENSMUST00000156029.8
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233709.2
CDS-3UTR GCA 90 bp CTGCCATTAGAAAGAAGCTGCCGGCCATACACGTGGCAGGGGCAGCAGAGGTTCTCATGGCGAAGTTTCTaGCAGTATTTGAGCTCCTCC +
Preference number: 4 (lower is better)
Translates to: LPLERSCRPYTWQGQQRFSWRSF*QYLSSS
Trigger: GGAGGAGCTCAAATACTGGCAGAAACTTCGCCATGA...GAACCTCTGCTGCCCCTGCCACGTGTATGGCCGGCAGCTTCTTTCTAATGGCAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000004985.11
ENSMUST00000156029.8
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR GCA 90 bp CAGTCCAGTCAGGGCCTGCCATTAGAAAGAAGCTGCCGGCCATACACGTGGCAGTCATGGCGAAGTTTCTaGCAGTATTTGAGCTCCTCC +
Preference number: 4 (lower is better)
Translates to: QSSQGLPLERSCRPYTWQSWRSF*QYLSSS
Trigger: GGAGGAGCTCAAATACTGGCAGAAACTTCGCCATGA...CTGCCACGTGTATGGCCGGCAGCTTCTTTCTAATGGCAGGCCCTGACTGGACTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000004985.11
ENSMUST00000156029.8
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR GCA 90 bp GAGGTATGGTTAGGTGGGAGAGACATGGAGAGAGCCGGCTGGCCCCAGAAAAGCTCATGGCGAAGTTTCTaGCAGTATTTGAGCTCCTCC +
Preference number: 4 (lower is better)
Translates to: EVWLGGRDMERAGWPQKSSWRSF*QYLSSS
Trigger: GGAGGAGCTCAAATACTGGCAGAAACTTCGCCATGA...GCTTTTCTGGGGCCAGCCGGCTCTCTCCATGTCTCTCCCACCTAACCATACCTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 8 transcripts:
ENSMUST00000004985.11
ENSMUST00000156029.8
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR GCA 90 bp CGAGGGACCCTGGCACATCTCTGGGATCAATGTCAGAACCTTGCCTGCCCTGAGTCATGGCGAAGTTTCTaGCAGTATTTGAGCTCCTCC +
Preference number: 4 (lower is better)
Translates to: RGTLAHLWDQCQNLACPESWRSF*QYLSSS
Trigger: GGAGGAGCTCAAATACTGGCAGAAACTTCGCCATGA...CTCAGGGCAGGCAAGGTTCTGACATTGATCCCAGAGATGTGCCAGGGTCCCTCG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000004985.11
ENSMUST00000156029.8
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR GCA 90 bp GTCAACATGGCAATTGGCGGTCTGCAAACCCGCCTGCGGCTTTGGTGCTTAAAGTGCTGTACTTTGACCTaGTCCCGCTTGAGCTTCTCC +
Preference number: 4 (lower is better)
Translates to: VNMAIGGLQTRLRLWCLKCCTLT*SRLSFS
Trigger: GGAGAAGCTCAAGCGGGAGCAGGTCAAAGTACAGCA...CTTTAAGCACCAAAGCCGCAGGCGGGTTTGCAGACCGCCAATTGCCATGTTGAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000004985.11
ENSMUST00000156029.8
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233709.2
CDS-3UTR GCA 90 bp AGCCCTCCAGGGGAACCACATGATTGGTCAATATTGGGTCTTGCCCTCGGAGACTGCTGTACTTTGACCTaGTCCCGCTTGAGCTTCTCC +
Preference number: 4 (lower is better)
Translates to: SPPGEPHDWSILGLALGDCCTLT*SRLSFS
Trigger: GGAGAAGCTCAAGCGGGAGCAGGTCAAAGTACAGCA...GTCTCCGAGGGCAAGACCCAATATTGACCAATCATGTGGTTCCCCTGGAGGGCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000004985.11
ENSMUST00000156029.8
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR GCA 90 bp GTGATGTTGCTGTCAGTTTGGCACAAGGGAGAGCAGAGAGCAATGAGGGAAGGGAGCTCCATGGCAGCCTaGTGTACTTTGACCTGCTCC +
Preference number: 4 (lower is better)
Translates to: VMLLSVWHKGEQRAMREGSSMAA*CTLTCS
Trigger: GGAGCAGGTCAAAGTACAGCAGGCTGCCATGGAGCT...CCCTTCCCTCATTGCTCTCTGCTCTCCCTTGTGCCAAACTGACAGCAACATCAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000004985.11
ENSMUST00000156029.8
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR GCA 90 bp GTCCAGTCAGGGCCTGCCATTAGAAAGAAGCTGCCGGCCATACACGTGGCAGGGTTCAGCAAAGATGTGTaGAGAGTCTTTCTCCTGCAG +
Preference number: 4 (lower is better)
Translates to: VQSGPAIRKKLPAIHVAGFSKDV*RVFLLQ
Trigger: CTGCAGGAGAAAGACTCTGCACACATCTTTGCTGAA...CCCTGCCACGTGTATGGCCGGCAGCTTCTTTCTAATGGCAGGCCCTGACTGGAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000004985.11
ENSMUST00000156029.8
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR GCA 90 bp CCTGGCAGACATCCATCTAATGTAGCAGCTGGCCAGGAAGGAAATGGGACATCACCGGAGGCGGACAGCTaGTCGGTGGAAAATTGTGTC +
Preference number: 4 (lower is better)
Translates to: PGRHPSNVAAGQEGNGTSPEADS*SVENCV
Trigger: GACACAATTTTCCACCGAGCAGCTGTCCGCCTCCGG...TGATGTCCCATTTCCTTCCTGGCCAGCTGCTACATTAGATGGATGTCTGCCAGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000004985.11
ENSMUST00000156029.8
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR GCA 90 bp ATTAGAAAGAAGCTGCCGGCCATACACGTGGCAGGGGCAGCAGAGGTTCTCATGTCACTAAGCAAGCATTaGAAGGGCTCGCTCCCCAGT +
Preference number: 4 (lower is better)
Translates to: IRKKLPAIHVAGAAEVLMSLSKH*KGSLPS
Trigger: ACTGGGGAGCGAGCCCTTGCAATGCTTGCTTAGTGA...CATGAGAACCTCTGCTGCCCCTGCCACGTGTATGGCCGGCAGCTTCTTTCTAAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000004985.11
ENSMUST00000156029.8
ENSMUST00000233701.2
CDS-3UTR GCA 90 bp CATGATTGGTCAATATTGGGTCTTGCCCTCGGAGACCCAGTCCAGTCAGGGCCTTCACTAAGCAAGCATTaGAAGGGCTCGCTCCCCAGT +
Preference number: 4 (lower is better)
Translates to: HDWSILGLALGDPVQSGPSLSKH*KGSLPS
Trigger: ACTGGGGAGCGAGCCCTTGCAATGCTTGCTTAGTGA...AGGCCCTGACTGGACTGGGTCTCCGAGGGCAAGACCCAATATTGACCAATCATG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000004985.11
ENSMUST00000156029.8
ENSMUST00000233701.2
CDS-3UTR CCA 90 bp CTGTTTCTACTTCTAAGTGGTTCTTCAGTGGAATATCCCCAGGGACCTCGGGTGAAGACTGTATGGGGATaGGGATCTCCGGCCCTCGGC +
Preference number: 4 (lower is better)
Translates to: LFLLLSGSSVEYPQGPRVKTVWG*GSPALG
Trigger: GCCGAGGGCCGGAGATCCCCATCCCCATACAGTCTT...CACCCGAGGTCCCTGGGGATATTCCACTGAAGAACCACTTAGAAGTAGAAACAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000004985.11
ENSMUST00000232705.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR CCA 90 bp GTGGGCCAGGTCTATCTCCCTGGCTGGCTAAGACTCTCAGCTGTTTCTACTTCTGCACTTAAGACTGTATaGGGATGGGGATCTCCGGCC +
Preference number: 4 (lower is better)
Translates to: VGQVYLPGWLRLSAVSTSALKTV*GWGSPA
Trigger: GGCCGGAGATCCCCATCCCCATACAGTCTTAAGTGC...AGAAGTAGAAACAGCTGAGAGTCTTAGCCAGCCAGGGAGATAGACCTGGCCCAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000004985.11
ENSMUST00000232705.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR CCA 90 bp CAAGGTAGAAGTCAACATGGCAATTGGCGGTCTGCAAACCCGCCTGCGGCTTTGGACTTGGCAGGGAATTaGGGCTGCTCACTGTTTTCC +
Preference number: 4 (lower is better)
Translates to: QGRSQHGNWRSANPPAALDLAGN*GCSLFS
Trigger: GGAAAACAGTGAGCAGCCCCAATTCCCTGCCAAGTC...CAAAGCCGCAGGCGGGTTTGCAGACCGCCAATTGCCATGTTGACTTCTACCTTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000004985.11
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233709.2
CDS-3UTR CCA 90 bp AGCAGCCCTCCAGGGGAACCACATGATTGGTCAATATTGGGTCTTGCCCTCGGAAGGGTTTCTTGGACTTaGCAGGGAATTGGGGCTGCT +
Preference number: 4 (lower is better)
Translates to: SSPPGEPHDWSILGLALGRVSWT*QGIGAA
Trigger: AGCAGCCCCAATTCCCTGCCAAGTCCAAGAAACCCT...TCCGAGGGCAAGACCCAATATTGACCAATCATGTGGTTCCCCTGGAGGGCTGCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000004985.11
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR CCA 90 bp ATGATTGGTCAATATTGGGTCTTGCCCTCGGAGACCCAGTCCAGTCAGGGCCTGAGGGTTTCTTGGACTTaGCAGGGAATTGGGGCTGCT +
Preference number: 4 (lower is better)
Translates to: MIGQYWVLPSETQSSQGLRVSWT*QGIGAA
Trigger: AGCAGCCCCAATTCCCTGCCAAGTCCAAGAAACCCT...CAGGCCCTGACTGGACTGGGTCTCCGAGGGCAAGACCCAATATTGACCAATCAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000004985.11
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR CCA 90 bp GAGGGAAGGATTCCGAGACTGAAAAATAGAGACAGAGGAGATAGTGTTGGGGGATCGATTAGGGACTGCTaGGCCCCACTGCTGCGGCTC +
Preference number: 4 (lower is better)
Translates to: EGRIPRLKNRDRGDSVGGSIRDC*APLLRL
Trigger: GAGCCGCAGCAGTGGGGCCCAGCAGTCCCTAATCGA...TCCCCCAACACTATCTCCTCTGTCTCTATTTTTCAGTCTCGGAATCCTTCCCTC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 5 transcripts:
ENSMUST00000004985.11
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233709.2
CDS-3UTR CCA 90 bp AAGGAGACAGAAAGGGAGAAGCCCCAAGATCTTGACACAGGTTTAGACAAGGGTTCGATTAGGGACTGCTaGGCCCCACTGCTGCGGCTC +
Preference number: 4 (lower is better)
Translates to: KETEREKPQDLDTGLDKGSIRDC*APLLRL
Trigger: GAGCCGCAGCAGTGGGGCCCAGCAGTCCCTAATCGA...ACCCTTGTCTAAACCTGTGTCAAGATCTTGGGGCTTCTCCCTTTCTGTCTCCTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000004985.11
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233709.2
CDS-3UTR CCA 90 bp CCTGCCATTAGAAAGAAGCTGCCGGCCATACACGTGGCAGGGGCAGCAGAGGTTATGACATTGCTATTGTaGCACTCATCGTCCAGGCAC +
Preference number: 4 (lower is better)
Translates to: PAIRKKLPAIHVAGAAEVMTLLL*HSSSRH
Trigger: GTGCCTGGACGATGAGTGCCACAATAGCAATGTCAT...AACCTCTGCTGCCCCTGCCACGTGTATGGCCGGCAGCTTCTTTCTAATGGCAGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000004985.11
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR CCA 90 bp AGAAAGAAGCTGCCGGCCATACACGTGGCAGGGGCAGCAGAGGTTCTCATGCCTATGACATTGCTATTGTaGCACTCATCGTCCAGGCAC +
Preference number: 4 (lower is better)
Translates to: RKKLPAIHVAGAAEVLMPMTLLL*HSSSRH
Trigger: GTGCCTGGACGATGAGTGCCACAATAGCAATGTCAT...AGGCATGAGAACCTCTGCTGCCCCTGCCACGTGTATGGCCGGCAGCTTCTTTCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000004985.11
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR CCA 90 bp GCATCCTGTCCTAAAAGAGCAGTTTTTAAAGTGGGACTCGGAGAGAGGGAAGGACCTCAGGGATCCAGATaGCGCAGACTACGTGGGCCC +
Preference number: 4 (lower is better)
Translates to: ASCPKRAVFKVGLGEREGPQGSR*RRLRGP
Trigger: GGGCCCACGTAGTCTGCGCCATCTGGATCCCTGAGG...TCCTTCCCTCTCTCCGAGTCCCACTTTAAAAACTGCTCTTTTAGGACAGGATGC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000004985.11
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233709.2
CDS-3UTR CCA 90 bp AGATCCGAGCCGCATCCTGTCCTAAAAGAGCAGTTTTTAAAGTGGGACTCGGAGCTTCCAGCGGGCGGGTaGAATGTTGTCGATGCCCTC +
Preference number: 4 (lower is better)
Translates to: RSEPHPVLKEQFLKWDSELPAGG*NVVDAL
Trigger: GAGGGCATCGACAACATTCCACCCGCCCGCTGGAAG...CTCCGAGTCCCACTTTAAAAACTGCTCTTTTAGGACAGGATGCGGCTCGGATCT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000004985.11
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233709.2
CDS-3UTR CCA 90 bp GTGGGCCAGGTCTATCTCCCTGGCTGGCTAAGACTCTCAGCTGTTTCTACTTCTGCCACACTTGGAGAGTaGGCCTCACAATACGCAGTC +
Preference number: 4 (lower is better)
Translates to: VGQVYLPGWLRLSAVSTSATLGE*ASQYAV
Trigger: GACTGCGTATTGTGAGGCCCACTCTCCAAGTGTGGC...AGAAGTAGAAACAGCTGAGAGTCTTAGCCAGCCAGGGAGATAGACCTGGCCCAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000004985.11
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR CCA 90 bp AAGATGGCTGGCTGGCCAGACAGGAGCTCCATCAGTGAGCTCTGCTTCTGTAAGGTAAGAGGGTATCTGTaGGACAGTGACCATGGGGAG +
Preference number: 4 (lower is better)
Translates to: KMAGWPDRSSISELCFCKVRGYL*DSDHGE
Trigger: CTCCCCATGGTCACTGTCCCACAGATACCCTCTTAC...CTTACAGAAGCAGAGCTCACTGATGGAGCTCCTGTCTGGCCAGCCAGCCATCTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000004985.11
CDS-3UTR CCA 90 bp TCTTGTTCAGTGACAGGAGCTGTGGTGGCGGTGGCTGTGCTAGCTTTTGCCGAAGTAAGAGGGTATCTGTaGGACAGTGACCATGGGGAG +
Preference number: 4 (lower is better)
Translates to: SCSVTGAVVAVAVLAFAEVRGYL*DSDHGE
Trigger: CTCCCCATGGTCACTGTCCCACAGATACCCTCTTAC...TTCGGCAAAAGCTAGCACAGCCACCGCCACCACAGCTCCTGTCACTGAACAAGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000232705.2
ENSMUST00000232997.2
CDS-3UTR CCA 90 bp TCGGAGACCCAGTCCAGTCAGGGCCTGCCATTAGAAAGAAGCTGCCGGCCATACGAATTCCAGGTAATCTaGAACCTCACTCAGGCTGAC +
Preference number: 4 (lower is better)
Translates to: SETQSSQGLPLERSCRPYEFQVI*NLTQAD
Trigger: GTCAGCCTGAGTGAGGTTCCAGATTACCTGGAATTC...GTATGGCCGGCAGCTTCTTTCTAATGGCAGGCCCTGACTGGACTGGGTCTCCGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000004985.11
ENSMUST00000156029.8
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR CCA 90 bp TTTTGGCACACAGCAGCCCTCCAGGGGAACCACATGATTGGTCAATATTGGGTCGGTGATTCGGGCAAGTaGGTGCCCCTCTCAGGATCA +
Preference number: 4 (lower is better)
Translates to: FWHTAALQGNHMIGQYWVGDSGK*VPLSGS
Trigger: TGATCCTGAGAGGGGCACCCACTTGCCCGAATCACC...GACCCAATATTGACCAATCATGTGGTTCCCCTGGAGGGCTGCTGTGTGCCAAAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 6 transcripts:
ENSMUST00000004985.11
ENSMUST00000156029.8
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR CCA 90 bp GAGGTATGGTTAGGTGGGAGAGACATGGAGAGAGCCGGCTGGCCCCAGAAAAGCAAAAGTCTTCCAATCTaGGTGATTCGGGCAAGTGGG +
Preference number: 4 (lower is better)
Translates to: EVWLGGRDMERAGWPQKSKSLPI*VIRASG
Trigger: CCCACTTGCCCGAATCACCCAGATTGGAAGACTTTT...GCTTTTCTGGGGCCAGCCGGCTCTCTCCATGTCTCTCCCACCTAACCATACCTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 6 transcripts:
ENSMUST00000004985.11
ENSMUST00000156029.8
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR CCA 90 bp CTCCAGGGGAACCACATGATTGGTCAATATTGGGTCTTGCCCTCGGAGACCCAGCTGCCTGAGCCACTGTaGTCAGAGTCTCCATTCACA +
Preference number: 4 (lower is better)
Translates to: LQGNHMIGQYWVLPSETQLPEPL*SESPFT
Trigger: TGTGAATGGAGACTCTGACCACAGTGGCTCAGGCAG...CTGGGTCTCCGAGGGCAAGACCCAATATTGACCAATCATGTGGTTCCCCTGGAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000004985.11
ENSMUST00000156029.8
ENSMUST00000233646.2
CDS-3UTR CCA 90 bp TTTTGGCACACAGCAGCCCTCCAGGGGAACCACATGATTGGTCAATATTGGGTCGGCTCAGGTGGATCATaGCGCGGTCATAGGCCACTT +
Preference number: 4 (lower is better)
Translates to: FWHTAALQGNHMIGQYWVGSGGS*RGHRPL
Trigger: AAGTGGCCTATGACCGCGCCATGATCCACCTGAGCC...GACCCAATATTGACCAATCATGTGGTTCCCCTGGAGGGCTGCTGTGTGCCAAAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000004985.11
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
CDS-3UTR CCA 90 bp CCTGGCAGACATCCATCTAATGTAGCAGCTGGCCAGGAAGGAAATGGGACATCAGGCTCAGGTGGATCATaGCGCGGTCATAGGCCACTT +
Preference number: 4 (lower is better)
Translates to: PGRHPSNVAAGQEGNGTSGSGGS*RGHRPL
Trigger: AAGTGGCCTATGACCGCGCCATGATCCACCTGAGCC...TGATGTCCCATTTCCTTCCTGGCCAGCTGCTACATTAGATGGATGTCTGCCAGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000004985.11
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
CDS-3UTR CCA 90 bp GGGACTCAAGCGCCTGGCAGACATCCATCTAATGTAGCAGCTGGCCAGGAAGGAGCTTCTGAGCCACTGTaGTCAGAGTCTCCATTCACA +
Preference number: 4 (lower is better)
Translates to: GTQAPGRHPSNVAAGQEGASEPL*SESPFT
Trigger: TGTGAATGGAGACTCTGACCACAGTGGCTCAGAAGC...TCCTTCCTGGCCAGCTGCTACATTAGATGGATGTCTGCCAGGCGCTTGAGTCCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000233709.2
CDS-3UTR TCA 90 bp CAGTCCAGTCAGGGCCTGCCATTAGAAAGAAGCTGCCGGCCATACACGTGGCAGCATTCGGTAATATCCTaGGCAGTCAGCTCATCTTCA +
Preference number: 4 (lower is better)
Translates to: QSSQGLPLERSCRPYTWQHSVIS*AVSSSS
Trigger: TGAAGATGAGCTGACTGCTCAGGATATTACCGAATG...CTGCCACGTGTATGGCCGGCAGCTTCTTTCTAATGGCAGGCCCTGACTGGACTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000004985.11
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR TCA 90 bp GTCAACATGGCAATTGGCGGTCTGCAAACCCGCCTGCGGCTTTGGTGCTTAAAGCATCACTGGTCTGTTTaGAGGCCCCACCTTTATTGG +
Preference number: 4 (lower is better)
Translates to: VNMAIGGLQTRLRLWCLKHHWSV*RPHLYW
Trigger: CCAATAAAGGTGGGGCCTTCAAACAGACCAGTGATG...CTTTAAGCACCAAAGCCGCAGGCGGGTTTGCAGACCGCCAATTGCCATGTTGAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000004985.11
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233709.2
CDS-3UTR TCA 90 bp CCAGGGGAACCACATGATTGGTCAATATTGGGTCTTGCCCTCGGAGACCCAGTCCATCACTGGTCTGTTTaGAGGCCCCACCTTTATTGG +
Preference number: 4 (lower is better)
Translates to: PGEPHDWSILGLALGDPVHHWSV*RPHLYW
Trigger: CCAATAAAGGTGGGGCCTTCAAACAGACCAGTGATG...GACTGGGTCTCCGAGGGCAAGACCCAATATTGACCAATCATGTGGTTCCCCTGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000004985.11
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR TCA 90 bp AAGGTAGAAGTCAACATGGCAATTGGCGGTCTGCAAACCCGCCTGCGGCTTTGGGTTTCTGCCAGTATTTaGGCTCCTCCTTCACTGCAC +
Preference number: 4 (lower is better)
Translates to: KVEVNMAIGGLQTRLRLWVSASI*APPSLH
Trigger: GTGCAGTGAAGGAGGAGCTCAAATACTGGCAGAAAC...CCAAAGCCGCAGGCGGGTTTGCAGACCGCCAATTGCCATGTTGACTTCTACCTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000004985.11
ENSMUST00000156029.8
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233709.2
CDS-3UTR TCA 90 bp ATGATTGGTCAATATTGGGTCTTGCCCTCGGAGACCCAGTCCAGTCAGGGCCTGGTTTCTGCCAGTATTTaGGCTCCTCCTTCACTGCAC +
Preference number: 4 (lower is better)
Translates to: MIGQYWVLPSETQSSQGLVSASI*APPSLH
Trigger: GTGCAGTGAAGGAGGAGCTCAAATACTGGCAGAAAC...CAGGCCCTGACTGGACTGGGTCTCCGAGGGCAAGACCCAATATTGACCAATCAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000004985.11
ENSMUST00000156029.8
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR TCA 90 bp TTTTGGCACACAGCAGCCCTCCAGGGGAACCACATGATTGGTCAATATTGGGTCCATTCTTGGCCTTCTTaGAGAGGACGGAGGTTCGGC +
Preference number: 4 (lower is better)
Translates to: FWHTAALQGNHMIGQYWVHSWPS*RGRRFG
Trigger: GCCGAACCTCCGTCCTCTTCAAGAAGGCCAAGAATG...GACCCAATATTGACCAATCATGTGGTTCCCCTGGAGGGCTGCTGTGTGCCAAAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000004985.11
ENSMUST00000156029.8
ENSMUST00000233701.2
CDS-3UTR TCA 90 bp GAGGGAAGGATTCCGAGACTGAAAAATAGAGACAGAGGAGATAGTGTTGGGGGACAGGAGGCTTCTGCCTaGGCCACTGTGGTCAGAGTC +
Preference number: 4 (lower is better)
Translates to: EGRIPRLKNRDRGDSVGGQEASA*ATVVRV
Trigger: GACTCTGACCACAGTGGCTCAGGCAGAAGCCTCCTG...TCCCCCAACACTATCTCCTCTGTCTCTATTTTTCAGTCTCGGAATCCTTCCCTC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000004985.11
ENSMUST00000156029.8
ENSMUST00000233646.2
CDS-3UTR TCA 90 bp AAGGAGACAGAAAGGGAGAAGCCCCAAGATCTTGACACAGGTTTAGACAAGGGTCAGGAGGCTTCTGCCTaGGCCACTGTGGTCAGAGTC +
Preference number: 4 (lower is better)
Translates to: KETEREKPQDLDTGLDKGQEASA*ATVVRV
Trigger: GACTCTGACCACAGTGGCTCAGGCAGAAGCCTCCTG...ACCCTTGTCTAAACCTGTGTCAAGATCTTGGGGCTTCTCCCTTTCTGTCTCCTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000004985.11
ENSMUST00000156029.8
ENSMUST00000233646.2
CDS-3UTR TCA 90 bp GGTGATGTTGCTGTCAGTTTGGCACAAGGGAGAGCAGAGAGCAATGAGGGAAGGGGCCTTCTAGCATCTTaGGCTTGTCCACAGTGTCCT +
Preference number: 4 (lower is better)
Translates to: GDVAVSLAQGRAESNEGRGLLAS*ACPQCP
Trigger: AGGACACTGTGGACAAGCTCAAGATGCTAGAAGGCC...CCTTCCCTCATTGCTCTCTGCTCTCCCTTGTGCCAAACTGACAGCAACATCACC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000004985.11
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
CDS-3UTR GCA 90 bp TGGTCAATATTGGGTCTTGCCCTCGGAGACCCAGTCCAGTCAGGGCCTGCCATTCCAGCCCTTTCTGCTTaGAGATATAGCAGGTTAGCT +
Preference number: 4 (lower is better)
Translates to: WSILGLALGDPVQSGPAIPALSA*RYSRLA
Trigger: AGCTAACCTGCTATATCTGCAAGCAGAAAGGGCTGG...AATGGCAGGCCCTGACTGGACTGGGTCTCCGAGGGCAAGACCCAATATTGACCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000004985.11
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR GCA 90 bp AGGGTCACAGAGTCCACAGCTGACCAGCTACCTGGGGATAGGGGGACGTGTCGGTCCTTCTTGATCTTCTaGTTCAAACTCATCTTACCC +
Preference number: 4 (lower is better)
Translates to: RVTESTADQLPGDRGTCRSFLIF*FKLILP
Trigger: GGGTAAGATGAGTTTGAAGCAGAAGATCAAGAAGGA...CCGACACGTCCCCCTATCCCCAGGTAGCTGGTCAGCTGTGGACTCTGTGACCCT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000004985.11
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233709.2
CDS-3UTR GCA 90 bp GTGGGCCAGGTCTATCTCCCTGGCTGGCTAAGACTCTCAGCTGTTTCTACTTCTGAGCTCCTCCTTCACTaGACTAGTCTTCTCGTCCTG +
Preference number: 4 (lower is better)
Translates to: VGQVYLPGWLRLSAVSTSELLLH*TSLLVL
Trigger: CAGGACGAGAAGACTAGTGCAGTGAAGGAGGAGCTC...AGAAGTAGAAACAGCTGAGAGTCTTAGCCAGCCAGGGAGATAGACCTGGCCCAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000004985.11
ENSMUST00000156029.8
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR GCA 90 bp CTGGCTGGCCAGACAGGAGCTCCATCAGTGAGCTCTGCTTCTGTAAGGAGAGCATCATGGCGAAGTTTCTaGCAGTATTTGAGCTCCTCC +
Preference number: 4 (lower is better)
Translates to: LAGQTGAPSVSSASVRRASWRSF*QYLSSS
Trigger: GGAGGAGCTCAAATACTGGCAGAAACTTCGCCATGA...TGCTCTCCTTACAGAAGCAGAGCTCACTGATGGAGCTCCTGTCTGGCCAGCCAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000004985.11
CDS-3UTR GCA 90 bp AAGGGAAGCTCTGAGGGTTCCCGAGGGACCCTGGCACATCTCTGGGATCAATGTTCATGGCGAAGTTTCTaGCAGTATTTGAGCTCCTCC +
Preference number: 4 (lower is better)
Translates to: KGSSEGSRGTLAHLWDQCSWRSF*QYLSSS
Trigger: GGAGGAGCTCAAATACTGGCAGAAACTTCGCCATGA...ACATTGATCCCAGAGATGTGCCAGGGTCCCTCGGGAACCCTCAGAGCTTCCCTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000004985.11
ENSMUST00000156029.8
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR GCA 90 bp GTGATGTTGCTGTCAGTTTGGCACAAGGGAGAGCAGAGAGCAATGAGGGAAGGGTGCTGTACTTTGACCTaGTCCCGCTTGAGCTTCTCC +
Preference number: 4 (lower is better)
Translates to: VMLLSVWHKGEQRAMREGCCTLT*SRLSFS
Trigger: GGAGAAGCTCAAGCGGGAGCAGGTCAAAGTACAGCA...CCCTTCCCTCATTGCTCTCTGCTCTCCCTTGTGCCAAACTGACAGCAACATCAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000004985.11
ENSMUST00000156029.8
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR GCA 90 bp GGGACTCGGAGAGAGGGAAGGATTCCGAGACTGAAAAATAGAGACAGAGGAGATCAGTTCCTTCAGCTGTaGCTCTGGGGACAGATGGGC +
Preference number: 4 (lower is better)
Translates to: GTRREGRIPRLKNRDRGDQFLQL*LWGQMG
Trigger: GCCCATCTGTCCCCAGAGGCACAGCTGAAGGAACTG...ATCTCCTCTGTCTCTATTTTTCAGTCTCGGAATCCTTCCCTCTCTCCGAGTCCC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000004985.11
ENSMUST00000156029.8
CDS-3UTR GCA 90 bp CTGGCACATCTCTGGGATCAATGTCAGAACCTTGCCTGCCCTGAGGTATGGTTACGCTGGACCGCATGGTaGTCACCAGATCCAGTTTCT +
Preference number: 4 (lower is better)
Translates to: LAHLWDQCQNLACPEVWLRWTAW*SPDPVS
Trigger: AGAAACTGGATCTGGTGAGCACCATGCGGTCCAGCG...TAACCATACCTCAGGGCAGGCAAGGTTCTGACATTGATCCCAGAGATGTGCCAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000004985.11
ENSMUST00000156029.8
ENSMUST00000233701.2
CDS-3UTR GCA 90 bp TTTTGGCACACAGCAGCCCTCCAGGGGAACCACATGATTGGTCAATATTGGGTCCGCTGGACCGCATGGTaGTCACCAGATCCAGTTTCT +
Preference number: 4 (lower is better)
Translates to: FWHTAALQGNHMIGQYWVRWTAW*SPDPVS
Trigger: AGAAACTGGATCTGGTGAGCACCATGCGGTCCAGCG...GACCCAATATTGACCAATCATGTGGTTCCCCTGGAGGGCTGCTGTGTGCCAAAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000004985.11
ENSMUST00000156029.8
ENSMUST00000233701.2
CDS-3UTR GCA 90 bp AGCAGCCCTCCAGGGGAACCACATGATTGGTCAATATTGGGTCTTGCCCTCGGAAGTGTTCATCCTCTGTaGTGGCTGGAGAAGCAGGAT +
Preference number: 4 (lower is better)
Translates to: SSPPGEPHDWSILGLALGSVHPL*WLEKQD
Trigger: ATCCTGCTTCTCCAGCCAGCACAGAGGATGAACACT...TCCGAGGGCAAGACCCAATATTGACCAATCATGTGGTTCCCCTGGAGGGCTGCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000004985.11
ENSMUST00000156029.8
ENSMUST00000233701.2
CDS-3UTR GCA 90 bp CTCCAGGGGAACCACATGATTGGTCAATATTGGGTCTTGCCCTCGGAGACCCAGAGTGTTCATCCTCTGTaGTGGCTGGAGAAGCAGGAT +
Preference number: 4 (lower is better)
Translates to: LQGNHMIGQYWVLPSETQSVHPL*WLEKQD
Trigger: ATCCTGCTTCTCCAGCCAGCACAGAGGATGAACACT...CTGGGTCTCCGAGGGCAAGACCCAATATTGACCAATCATGTGGTTCCCCTGGAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000004985.11
ENSMUST00000156029.8
ENSMUST00000233701.2
CDS-3UTR GCA 90 bp TCAGCTGTTTCTACTTCTAAGTGGTTCTTCAGTGGAATATCCCCAGGGACCTCGTCTCCAGCCTCTGCCTaGTTCTGCTCGCCCAGCTTC +
Preference number: 4 (lower is better)
Translates to: SAVSTSKWFFSGISPGTSSPASA*FCSPSF
Trigger: GAAGCTGGGCGAGCAGAAGCAGGCAGAGGCTGGAGA...CGAGGTCCCTGGGGATATTCCACTGAAGAACCACTTAGAAGTAGAAACAGCTGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000004985.11
ENSMUST00000156029.8
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
CDS-3UTR CCA 90 bp TGGGGGAGGGTCCTTACAGGTGGGGTAGCTTCTACCTGGGACTCAAGCGCCTGGAGTGATGATCTTAAGTaGGTCATAAATGCTGATCCG +
Preference number: 4 (lower is better)
Translates to: WGRVLTGGVASTWDSSAWSDDLK*VINADP
Trigger: CGGATCAGCATTTATGACCCACTTAAGATCATCACT...CCAGGCGCTTGAGTCCCAGGTAGAAGCTACCCCACCTGTAAGGACCCTCCCCCA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 7 transcripts:
ENSMUST00000004985.11
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR CCA 90 bp ATCAATTTGGTGATGTTGCTGTCAGTTTGGCACAAGGGAGAGCAGAGAGCAATGTCGATTAGGGACTGCTaGGCCCCACTGCTGCGGCTC +
Preference number: 4 (lower is better)
Translates to: INLVMLLSVWHKGEQRAMSIRDC*APLLRL
Trigger: GAGCCGCAGCAGTGGGGCCCAGCAGTCCCTAATCGA...CATTGCTCTCTGCTCTCCCTTGTGCCAAACTGACAGCAACATCACCAAATTGAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000004985.11
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR CCA 90 bp TTGTCCCTTGGAAGCCACTGCCTGCCAGCTTCAAACGCCAGTCCTCCACTGAGAATGACATTGCTATTGTaGCACTCATCGTCCAGGCAC +
Preference number: 4 (lower is better)
Translates to: LSLGSHCLPASNASPPLRMTLLL*HSSSRH
Trigger: GTGCCTGGACGATGAGTGCCACAATAGCAATGTCAT...TCTCAGTGGAGGACTGGCGTTTGAAGCTGGCAGGCAGTGGCTTCCAAGGGACAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000232997.2
CDS-3UTR CCA 90 bp CTCCAGGGGAACCACATGATTGGTCAATATTGGGTCTTGCCCTCGGAGACCCAGTGCTCAGCATTTCTCTaGGACTGTAAGTGGGAGTGC +
Preference number: 4 (lower is better)
Translates to: LQGNHMIGQYWVLPSETQCSAFL*DCKWEC
Trigger: GCACTCCCACTTACAGTCCCAGAGAAATGCTGAGCA...CTGGGTCTCCGAGGGCAAGACCCAATATTGACCAATCATGTGGTTCCCCTGGAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000004985.11
ENSMUST00000156029.8
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR CCA 90 bp GCCCTGTGCCACAGCAGATCCGAGCCGCATCCTGTCCTAAAAGAGCAGTTTTTAATGGGCCCGGTTCTCTaGGATAAGGATGTTGTCCAC +
Preference number: 4 (lower is better)
Translates to: ALCHSRSEPHPVLKEQFLMGPVL*DKDVVH
Trigger: GTGGACAACATCCTTATCCCAGAGAACCGGGCCCAT...TAAAAACTGCTCTTTTAGGACAGGATGCGGCTCGGATCTGCTGTGGCACAGGGC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000004985.11
ENSMUST00000156029.8
CDS-3UTR CCA 90 bp GGGAACCACATGATTGGTCAATATTGGGTCTTGCCCTCGGAGACCCAGTCCAGTATGGGCCCGGTTCTCTaGGATAAGGATGTTGTCCAC +
Preference number: 4 (lower is better)
Translates to: GNHMIGQYWVLPSETQSSMGPVL*DKDVVH
Trigger: GTGGACAACATCCTTATCCCAGAGAACCGGGCCCAT...ACTGGACTGGGTCTCCGAGGGCAAGACCCAATATTGACCAATCATGTGGTTCCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000004985.11
ENSMUST00000156029.8
ENSMUST00000233701.2
CDS-3UTR CCA 90 bp CTGGCACATCTCTGGGATCAATGTCAGAACCTTGCCTGCCCTGAGGTATGGTTAGATGGGTTTCAGGGTTaGGGGATCTGGAGGGGATTC +
Preference number: 4 (lower is better)
Translates to: LAHLWDQCQNLACPEVWLDGFQG*GIWRGF
Trigger: GAATCCCCTCCAGATCCCCCAACCCTGAAACCCATC...TAACCATACCTCAGGGCAGGCAAGGTTCTGACATTGATCCCAGAGATGTGCCAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000004985.11
ENSMUST00000156029.8
ENSMUST00000233701.2
CDS-3UTR CCA 90 bp GAGGGAAGGATTCCGAGACTGAAAAATAGAGACAGAGGAGATAGTGTTGGGGGAACAGCTCCGGCTCCTTaGCCGCTTCCGGGAATAGTG +
Preference number: 4 (lower is better)
Translates to: EGRIPRLKNRDRGDSVGGTAPAP*PLPGIV
Trigger: CACTATTCCCGGAAGCGGCCAAGGAGCCGGAGCTGT...TCCCCCAACACTATCTCCTCTGTCTCTATTTTTCAGTCTCGGAATCCTTCCCTC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000004985.11
ENSMUST00000156029.8
CDS-3UTR CCA 90 bp CAATTTGGTGATGTTGCTGTCAGTTTGGCACAAGGGAGAGCAGAGAGCAATGAGACAGCTCCGGCTCCTTaGCCGCTTCCGGGAATAGTG +
Preference number: 4 (lower is better)
Translates to: QFGDVAVSLAQGRAESNETAPAP*PLPGIV
Trigger: CACTATTCCCGGAAGCGGCCAAGGAGCCGGAGCTGT...CTCATTGCTCTCTGCTCTCCCTTGTGCCAAACTGACAGCAACATCACCAAATTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000004985.11
ENSMUST00000156029.8
ENSMUST00000233701.2
CDS-3UTR TCA 90 bp GAGGGAAGGATTCCGAGACTGAAAAATAGAGACAGAGGAGATAGTGTTGGGGGATGGGTTCAATCTTCATaGAGAGCCCAGCCCGCTGCG +
Preference number: 4 (lower is better)
Translates to: EGRIPRLKNRDRGDSVGGWVQSS*RAQPAA
Trigger: CGCAGCGGGCTGGGCTCTTCATGAAGATTGAACCCA...TCCCCCAACACTATCTCCTCTGTCTCTATTTTTCAGTCTCGGAATCCTTCCCTC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 5 transcripts:
ENSMUST00000004985.11
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233709.2
CDS-3UTR TCA 90 bp GGTGATGTTGCTGTCAGTTTGGCACAAGGGAGAGCAGAGAGCAATGAGGGAAGGGAACCTCACTCAGGCTaGCAGGTTCAGCAAAGATGT +
Preference number: 4 (lower is better)
Translates to: GDVAVSLAQGRAESNEGREPHSG*QVQQRC
Trigger: ACATCTTTGCTGAACCTGTCAGCCTGAGTGAGGTTC...CCTTCCCTCATTGCTCTCTGCTCTCCCTTGTGCCAAACTGACAGCAACATCACC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000004985.11
ENSMUST00000156029.8
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR TCA 90 bp GCCCTGTGCCACAGCAGATCCGAGCCGCATCCTGTCCTAAAAGAGCAGTTTTTAGAACCTCACTCAGGCTaGCAGGTTCAGCAAAGATGT +
Preference number: 4 (lower is better)
Translates to: ALCHSRSEPHPVLKEQFLEPHSG*QVQQRC
Trigger: ACATCTTTGCTGAACCTGTCAGCCTGAGTGAGGTTC...TAAAAACTGCTCTTTTAGGACAGGATGCGGCTCGGATCTGCTGTGGCACAGGGC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000004985.11
ENSMUST00000156029.8
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233709.2
CDS-3UTR TCA 90 bp CAATTTGGTGATGTTGCTGTCAGTTTGGCACAAGGGAGAGCAGAGAGCAATGAGTTTGCCGAAGGGCATTaGTCTCCCTGCGCAGCATGC +
Preference number: 4 (lower is better)
Translates to: QFGDVAVSLAQGRAESNEFAEGH*SPCAAC
Trigger: GCATGCTGCGCAGGGAGATCAATGCCCTTCGGCAAA...CTCATTGCTCTCTGCTCTCCCTTGTGCCAAACTGACAGCAACATCACCAAATTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000004985.11
ENSMUST00000156029.8
ENSMUST00000233701.2
CDS-3UTR TCA 90 bp GCCCTCTTGGTGAGTTTTGTTGGTTCCCTTTTAAACTCTGGCTCGAGTCCCAAACACAGTCTTGTTCAGTaGCAGGAGCTGTGGTGGCGG +
Preference number: 4 (lower is better)
Translates to: ALLVSFVGSLLNSGSSPKHSLVQ*QELWWR
Trigger: CCGCCACCACAGCTCCTGTCACTGAACAAGACTGTG...TTTGGGACTCGAGCCAGAGTTTAAAAGGGAACCAACAAAACTCACCAAGAGGGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000004985.11
ENSMUST00000156029.8
CDS-3UTR TCA 90 bp AAGGTAGAAGTCAACATGGCAATTGGCGGTCTGCAAACCCGCCTGCGGCTTTGGAAACCTCACTCAGGCTaGCAGGTTCAGCAAAGATGT +
Preference number: 4 (lower is better)
Translates to: KVEVNMAIGGLQTRLRLWKPHSG*QVQQRC
Trigger: ACATCTTTGCTGAACCTGTCAGCCTGAGTGAGGTTT...CCAAAGCCGCAGGCGGGTTTGCAGACCGCCAATTGCCATGTTGACTTCTACCTT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000232997.2
CDS-3UTR GCA 90 bp CAATATTGGGTCTTGCCCTCGGAGACCCAGTCCAGTCAGGGCCTGCCATTAGAACCAGCCCTTTCTGCTTaGAGATATAGCAGGTTAGCT +
Preference number: 4 (lower is better)
Translates to: QYWVLPSETQSSQGLPLEPALSA*RYSRLA
Trigger: AGCTAACCTGCTATATCTGCAAGCAGAAAGGGCTGG...TTCTAATGGCAGGCCCTGACTGGACTGGGTCTCCGAGGGCAAGACCCAATATTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000004985.11
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR GCA 90 bp CTCCAGGGGAACCACATGATTGGTCAATATTGGGTCTTGCCCTCGGAGACCCAGCCAGCCCTTTCTGCTTaGAGATATAGCAGGTTAGCT +
Preference number: 4 (lower is better)
Translates to: LQGNHMIGQYWVLPSETQPALSA*RYSRLA
Trigger: AGCTAACCTGCTATATCTGCAAGCAGAAAGGGCTGG...CTGGGTCTCCGAGGGCAAGACCCAATATTGACCAATCATGTGGTTCCCCTGGAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000004985.11
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR GCA 90 bp GGAGAGGCAAAGAAGGCAGACACAGGCCCAGCTCGGCTCTCACAGGTAGCTGGATCCTTCTTGATCTTCTaGTTCAAACTCATCTTACCC +
Preference number: 4 (lower is better)
Translates to: GEAKKADTGPARLSQVAGSFLIF*FKLILP
Trigger: GGGTAAGATGAGTTTGAAGCAGAAGATCAAGAAGGA...TCCAGCTACCTGTGAGAGCCGAGCTGGGCCTGTGTCTGCCTTCTTTGCCTCTCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR GCA 90 bp GAGGGAAGGATTCCGAGACTGAAAAATAGAGACAGAGGAGATAGTGTTGGGGGATCGTCCTGCTCCCGCTaGTCAGCATTTCTCTGGGAC +
Preference number: 4 (lower is better)
Translates to: EGRIPRLKNRDRGDSVGGSSCSR*SAFLWD
Trigger: GTCCCAGAGAAATGCTGAGCAGCGGGAGCAGGACGA...TCCCCCAACACTATCTCCTCTGTCTCTATTTTTCAGTCTCGGAATCCTTCCCTC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 6 transcripts:
ENSMUST00000004985.11
ENSMUST00000156029.8
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233709.2
CDS-3UTR CCA 90 bp GAGGGTCCTTACAGGTGGGGTAGCTTCTACCTGGGACTCAAGCGCCTGGCAGACAGTGATGATCTTAAGTaGGTCATAAATGCTGATCCG +
Preference number: 4 (lower is better)
Translates to: EGPYRWGSFYLGLKRLADSDDLK*VINADP
Trigger: CGGATCAGCATTTATGACCCACTTAAGATCATCACT...GTCTGCCAGGCGCTTGAGTCCCAGGTAGAAGCTACCCCACCTGTAAGGACCCTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000004985.11
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR CCA 90 bp TTTTGGCACACAGCAGCCCTCCAGGGGAACCACATGATTGGTCAATATTGGGTCAGGGTTTCTTGGACTTaGCAGGGAATTGGGGCTGCT +
Preference number: 4 (lower is better)
Translates to: FWHTAALQGNHMIGQYWVRVSWT*QGIGAA
Trigger: AGCAGCCCCAATTCCCTGCCAAGTCCAAGAAACCCT...GACCCAATATTGACCAATCATGTGGTTCCCCTGGAGGGCTGCTGTGTGCCAAAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 7 transcripts:
ENSMUST00000004985.11
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR CCA 90 bp AAAAATAACATCAAGGTAGAAGTCAACATGGCAATTGGCGGTCTGCAAACCCGCCCACCACACGAAAGCTaGGCTGGGGGAGGTGGAAGG +
Preference number: 4 (lower is better)
Translates to: KNNIKVEVNMAIGGLQTRPPHES*AGGGGR
Trigger: CCTTCCACCTCCCCCAGCCCAGCTTTCGTGTGGTGG...GCGGGTTTGCAGACCGCCAATTGCCATGTTGACTTCTACCTTGATGTTATTTTT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 5 transcripts:
ENSMUST00000004985.11
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233709.2
CDS-3UTR CCA 90 bp CTCCAGGGGAACCACATGATTGGTCAATATTGGGTCTTGCCCTCGGAGACCCAGATGACATTGCTATTGTaGCACTCATCGTCCAGGCAC +
Preference number: 4 (lower is better)
Translates to: LQGNHMIGQYWVLPSETQMTLLL*HSSSRH
Trigger: GTGCCTGGACGATGAGTGCCACAATAGCAATGTCAT...CTGGGTCTCCGAGGGCAAGACCCAATATTGACCAATCATGTGGTTCCCCTGGAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000004985.11
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR CCA 90 bp GTTGGTTCCCTTTTAAACTCTGGCTCGAGTCCCAAAAGTGTAAGAAGTTGGTGGCTTCCAGCGGGCGGGTaGAATGTTGTCGATGCCCTC +
Preference number: 4 (lower is better)
Translates to: VGSLLNSGSSPKSVRSWWLPAGG*NVVDAL
Trigger: GAGGGCATCGACAACATTCCACCCGCCCGCTGGAAG...CCACCAACTTCTTACACTTTTGGGACTCGAGCCAGAGTTTAAAAGGGAACCAAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000004985.11
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233709.2
CDS-3UTR CCA 90 bp AAGAAATGTCAAGAGCAGAAGCCTCTGAGAGCTGCGTTGGCTTGTCAGTCAGCTCTTTATGGCACTGAATaGCCGCGCCCAGCCCTTTCT +
Preference number: 4 (lower is better)
Translates to: KKCQEQKPLRAALACQSALYGTE*PRPALS
Trigger: AGAAAGGGCTGGGCGCGGCCATTCAGTGCCATAAAG...AGCTGACTGACAAGCCAACGCAGCTCTCAGAGGCTTCTGCTCTTGACATTTCTT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000004985.11
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233709.2
CDS-3UTR CCA 90 bp CTGGCACATCTCTGGGATCAATGTCAGAACCTTGCCTGCCCTGAGGTATGGTTAGTAAGAGGGTATCTGTaGGACAGTGACCATGGGGAG +
Preference number: 4 (lower is better)
Translates to: LAHLWDQCQNLACPEVWLVRGYL*DSDHGE
Trigger: CTCCCCATGGTCACTGTCCCACAGATACCCTCTTAC...TAACCATACCTCAGGGCAGGCAAGGTTCTGACATTGATCCCAGAGATGTGCCAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000004985.11
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR CCA 90 bp TTTTGGCACACAGCAGCCCTCCAGGGGAACCACATGATTGGTCAATATTGGGTCGTAAGAGGGTATCTGTaGGACAGTGACCATGGGGAG +
Preference number: 4 (lower is better)
Translates to: FWHTAALQGNHMIGQYWVVRGYL*DSDHGE
Trigger: CTCCCCATGGTCACTGTCCCACAGATACCCTCTTAC...GACCCAATATTGACCAATCATGTGGTTCCCCTGGAGGGCTGCTGTGTGCCAAAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 7 transcripts:
ENSMUST00000004985.11
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR CCA 90 bp CTCCAGGGGAACCACATGATTGGTCAATATTGGGTCTTGCCCTCGGAGACCCAGGAATTCCAGGTAATCTaGAACCTCACTCAGGCTGAC +
Preference number: 4 (lower is better)
Translates to: LQGNHMIGQYWVLPSETQEFQVI*NLTQAD
Trigger: GTCAGCCTGAGTGAGGTTCCAGATTACCTGGAATTC...CTGGGTCTCCGAGGGCAAGACCCAATATTGACCAATCATGTGGTTCCCCTGGAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000004985.11
ENSMUST00000156029.8
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR CCA 90 bp AGGAGCTCCATCAGTGAGCTCTGCTTCTGTAAGGAGAGCACCCACCATCAGCCTAAAAGTCTTCCAATCTaGGTGATTCGGGCAAGTGGG +
Preference number: 4 (lower is better)
Translates to: RSSISELCFCKESTHHQPKSLPI*VIRASG
Trigger: CCCACTTGCCCGAATCACCCAGATTGGAAGACTTTT...AGGCTGATGGTGGGTGCTCTCCTTACAGAAGCAGAGCTCACTGATGGAGCTCCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000004985.11
CDS-3UTR CCA 90 bp AGCCCTCCAGGGGAACCACATGATTGGTCAATATTGGGTCTTGCCCTCGGAGACAAAAGTCTTCCAATCTaGGTGATTCGGGCAAGTGGG +
Preference number: 4 (lower is better)
Translates to: SPPGEPHDWSILGLALGDKSLPI*VIRASG
Trigger: CCCACTTGCCCGAATCACCCAGATTGGAAGACTTTT...GTCTCCGAGGGCAAGACCCAATATTGACCAATCATGTGGTTCCCCTGGAGGGCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000004985.11
ENSMUST00000156029.8
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR CCA 90 bp CAAGGTAGAAGTCAACATGGCAATTGGCGGTCTGCAAACCCGCCTGCGGCTTTGAAAAGTCTTCCAATCTaGGTGATTCGGGCAAGTGGG +
Preference number: 4 (lower is better)
Translates to: QGRSQHGNWRSANPPAALKSLPI*VIRASG
Trigger: CCCACTTGCCCGAATCACCCAGATTGGAAGACTTTT...CAAAGCCGCAGGCGGGTTTGCAGACCGCCAATTGCCATGTTGACTTCTACCTTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000004985.11
ENSMUST00000156029.8
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233709.2
CDS-3UTR CCA 90 bp CTGGCACATCTCTGGGATCAATGTCAGAACCTTGCCTGCCCTGAGGTATGGTTAATGGGCCCGGTTCTCTaGGATAAGGATGTTGTCCAC +
Preference number: 4 (lower is better)
Translates to: LAHLWDQCQNLACPEVWLMGPVL*DKDVVH
Trigger: GTGGACAACATCCTTATCCCAGAGAACCGGGCCCAT...TAACCATACCTCAGGGCAGGCAAGGTTCTGACATTGATCCCAGAGATGTGCCAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000004985.11
ENSMUST00000156029.8
ENSMUST00000233701.2
CDS-3UTR CCA 90 bp ATCAATTTGGTGATGTTGCTGTCAGTTTGGCACAAGGGAGAGCAGAGAGCAATGCCCCGCTGGACCGCATaGTGCTCACCAGATCCAGTT +
Preference number: 4 (lower is better)
Translates to: INLVMLLSVWHKGEQRAMPRWTA*CSPDPV
Trigger: AACTGGATCTGGTGAGCACCATGCGGTCCAGCGGGG...CATTGCTCTCTGCTCTCCCTTGTGCCAAACTGACAGCAACATCACCAAATTGAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000004985.11
ENSMUST00000156029.8
ENSMUST00000233701.2
CDS-3UTR CCA 90 bp GCCCTCTTGGTGAGTTTTGTTGGTTCCCTTTTAAACTCTGGCTCGAGTCCCAAATCGTCCTCTGGGCCATaGTCCTCGCCATTCTCAAGG +
Preference number: 4 (lower is better)
Translates to: ALLVSFVGSLLNSGSSPKSSSGP*SSPFSR
Trigger: CCTTGAGAATGGCGAGGACCATGGCCCAGAGGACGA...TTTGGGACTCGAGCCAGAGTTTAAAAGGGAACCAACAAAACTCACCAAGAGGGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000004985.11
ENSMUST00000156029.8
CDS-3UTR CCA 90 bp ATCAATTTGGTGATGTTGCTGTCAGTTTGGCACAAGGGAGAGCAGAGAGCAATGCACACGAGACAGGGCTaGCTTCCCACGGCTGCGTTT +
Preference number: 4 (lower is better)
Translates to: INLVMLLSVWHKGEQRAMHTRQG*LPTAAF
Trigger: AAACGCAGCCGTGGGAAGCCAGCCCTGTCTCGTGTG...CATTGCTCTCTGCTCTCCCTTGTGCCAAACTGACAGCAACATCACCAAATTGAT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000004985.11
ENSMUST00000156029.8
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR CCA 90 bp ATGTCAAGAGCAGAAGCCTCTGAGAGCTGCGTTGGCTTGTCAGTCAGCTTTCCTCTGCCTGAGCCACTGTaGTCAGAGTCTCCATTCACA +
Preference number: 4 (lower is better)
Translates to: MSRAEASESCVGLSVSFPLPEPL*SESPFT
Trigger: TGTGAATGGAGACTCTGACCACAGTGGCTCAGGCAG...AGGAAAGCTGACTGACAAGCCAACGCAGCTCTCAGAGGCTTCTGCTCTTGACAT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000004985.11
ENSMUST00000156029.8
ENSMUST00000233646.2
CDS-3UTR TCA 90 bp GGACCCTGGCACATCTCTGGGATCAATGTCAGAACCTTGCCTGCCCTGAGGTATCATTCGGTAATATCCTaGGCAGTCAGCTCATCTTCA +
Preference number: 4 (lower is better)
Translates to: GPWHISGINVRTLPALRYHSVIS*AVSSSS
Trigger: TGAAGATGAGCTGACTGCTCAGGATATTACCGAATG...ATACCTCAGGGCAGGCAAGGTTCTGACATTGATCCCAGAGATGTGCCAGGGTCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000004985.11
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR TCA 90 bp AAGGAGACAGAAAGGGAGAAGCCCCAAGATCTTGACACAGGTTTAGACAAGGGTAAGGTTTGCTGTCGCTaGTGGGTTTCAGGGTTGGGG +
Preference number: 4 (lower is better)
Translates to: KETEREKPQDLDTGLDKGKVCCR*WVSGLG
Trigger: CCCCAACCCTGAAACCCATCAGCGACAGCAAACCTT...ACCCTTGTCTAAACCTGTGTCAAGATCTTGGGGCTTCTCCCTTTCTGTCTCCTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000004985.11
ENSMUST00000156029.8
CDS-3UTR TCA 90 bp GAGACAGAAAGGGAGAAGCCCCAAGATCTTGACACAGGTTTAGACAAGGGTCACGGCCTTCTAGCATCTTaGGCTTGTCCACAGTGTCCT +
Preference number: 4 (lower is better)
Translates to: ETEREKPQDLDTGLDKGHGLLAS*ACPQCP
Trigger: AGGACACTGTGGACAAGCTCAAGATGCTAGAAGGCC...GTGACCCTTGTCTAAACCTGTGTCAAGATCTTGGGGCTTCTCCCTTTCTGTCTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000004985.11
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
CDS-3UTR TCA 90 bp CCTGGCAGACATCCATCTAATGTAGCAGCTGGCCAGGAAGGAAATGGGACATCAATAGGCCACTTGTACTaGCTTCCGGATGCTGGTCTT +
Preference number: 4 (lower is better)
Translates to: PGRHPSNVAAGQEGNGTSIGHLY*LPDAGL
Trigger: AAGACCAGCATCCGGAAGTCAGTACAAGTGGCCTAT...TGATGTCCCATTTCCTTCCTGGCCAGCTGCTACATTAGATGGATGTCTGCCAGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000004985.11
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
CDS-3UTR TCA 90 bp TCAGCTGTTTCTACTTCTAAGTGGTTCTTCAGTGGAATATCCCCAGGGACCTCGACAGGTAGCTGGAAGTaGCAAAGGCATGGGAGCCAC +
Preference number: 4 (lower is better)
Translates to: SAVSTSKWFFSGISPGTSTGSWK*QRHGSH
Trigger: GTGGCTCCCATGCCTTTGTCACTTCCAGCTACCTGT...CGAGGTCCCTGGGGATATTCCACTGAAGAACCACTTAGAAGTAGAAACAGCTGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000004985.11
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
CDS-3UTR GCA 90 bp GTGATGTTGCTGTCAGTTTGGCACAAGGGAGAGCAGAGAGCAATGAGGGAAGGGCCAGCCCTTTCTGCTTaGAGATATAGCAGGTTAGCT +
Preference number: 4 (lower is better)
Translates to: VMLLSVWHKGEQRAMREGPALSA*RYSRLA
Trigger: AGCTAACCTGCTATATCTGCAAGCAGAAAGGGCTGG...CCCTTCCCTCATTGCTCTCTGCTCTCCCTTGTGCCAAACTGACAGCAACATCAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000004985.11
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR GCA 90 bp GTGGGCCAGGTCTATCTCCCTGGCTGGCTAAGACTCTCAGCTGTTTCTACTTCTCCAGCCCTTTCTGCTTaGAGATATAGCAGGTTAGCT +
Preference number: 4 (lower is better)
Translates to: VGQVYLPGWLRLSAVSTSPALSA*RYSRLA
Trigger: AGCTAACCTGCTATATCTGCAAGCAGAAAGGGCTGG...AGAAGTAGAAACAGCTGAGAGTCTTAGCCAGCCAGGGAGATAGACCTGGCCCAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000004985.11
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR GCA 90 bp AGGGTCCTTACAGGTGGGGTAGCTTCTACCTGGGACTCAAGCGCCTGGCAGACATCCTTCTTGATCTTCTaGTTCAAACTCATCTTACCC +
Preference number: 4 (lower is better)
Translates to: RVLTGGVASTWDSSAWQTSFLIF*FKLILP
Trigger: GGGTAAGATGAGTTTGAAGCAGAAGATCAAGAAGGA...TGTCTGCCAGGCGCTTGAGTCCCAGGTAGAAGCTACCCCACCTGTAAGGACCCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000004985.11
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR GCA 90 bp GTCTTGCCCTCGGAGACCCAGTCCAGTCAGGGCCTGCCATTAGAAAGAAGCTGCTCCTTCTTGATCTTCTaGTTCAAACTCATCTTACCC +
Preference number: 4 (lower is better)
Translates to: VLPSETQSSQGLPLERSCSFLIF*FKLILP
Trigger: GGGTAAGATGAGTTTGAAGCAGAAGATCAAGAAGGA...GCAGCTTCTTTCTAATGGCAGGCCCTGACTGGACTGGGTCTCCGAGGGCAAGAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000004985.11
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR GCA 90 bp AAGAAATGTCAAGAGCAGAAGCCTCTGAGAGCTGCGTTGGCTTGTCAGTCAGCTGAGCTCCTCCTTCACTaGACTAGTCTTCTCGTCCTG +
Preference number: 4 (lower is better)
Translates to: KKCQEQKPLRAALACQSAELLLH*TSLLVL
Trigger: CAGGACGAGAAGACTAGTGCAGTGAAGGAGGAGCTC...AGCTGACTGACAAGCCAACGCAGCTCTCAGAGGCTTCTGCTCTTGACATTTCTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000004985.11
ENSMUST00000156029.8
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233709.2
CDS-3UTR GCA 90 bp CTGTTTCTACTTCTAAGTGGTTCTTCAGTGGAATATCCCCAGGGACCTCGGGTGTGCTGTACTTTGACCTaGTCCCGCTTGAGCTTCTCC +
Preference number: 4 (lower is better)
Translates to: LFLLLSGSSVEYPQGPRVCCTLT*SRLSFS
Trigger: GGAGAAGCTCAAGCGGGAGCAGGTCAAAGTACAGCA...CACCCGAGGTCCCTGGGGATATTCCACTGAAGAACCACTTAGAAGTAGAAACAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000004985.11
ENSMUST00000156029.8
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR GCA 90 bp CTGTTTCTACTTCTAAGTGGTTCTTCAGTGGAATATCCCCAGGGACCTCGGGTGGGCTGTGCTAGCTTTTaGCGAAGGGCATTGATCTCC +
Preference number: 4 (lower is better)
Translates to: LFLLLSGSSVEYPQGPRVGCASF*RRALIS
Trigger: GGAGATCAATGCCCTTCGGCAAAAGCTAGCACAGCC...CACCCGAGGTCCCTGGGGATATTCCACTGAAGAACCACTTAGAAGTAGAAACAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000004985.11
ENSMUST00000156029.8
ENSMUST00000233701.2
CDS-3UTR GCA 90 bp TGCCACAGCAGATCCGAGCCGCATCCTGTCCTAAAAGAGCAGTTTTTAAAGTGGGTACTGACTTCCGGATaGTGGTCTTGCGGCCTTCTA +
Preference number: 4 (lower is better)
Translates to: CHSRSEPHPVLKEQFLKWVLTSG*WSCGLL
Trigger: TAGAAGGCCGCAAGACCAGCATCCGGAAGTCAGTAC...CCACTTTAAAAACTGCTCTTTTAGGACAGGATGCGGCTCGGATCTGCTGTGGCA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000004985.11
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
CDS-3UTR CCA 90 bp GCATCCTGTCCTAAAAGAGCAGTTTTTAAAGTGGGACTCGGAGAGAGGGAAGGAGCACTTAAGACTGTATaGGGATGGGGATCTCCGGCC +
Preference number: 4 (lower is better)
Translates to: ASCPKRAVFKVGLGEREGALKTV*GWGSPA
Trigger: GGCCGGAGATCCCCATCCCCATACAGTCTTAAGTGC...TCCTTCCCTCTCTCCGAGTCCCACTTTAAAAACTGCTCTTTTAGGACAGGATGC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000004985.11
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233709.2
CDS-3UTR CCA 90 bp CAATTTGGTGATGTTGCTGTCAGTTTGGCACAAGGGAGAGCAGAGAGCAATGAGGCACTTAAGACTGTATaGGGATGGGGATCTCCGGCC +
Preference number: 4 (lower is better)
Translates to: QFGDVAVSLAQGRAESNEALKTV*GWGSPA
Trigger: GGCCGGAGATCCCCATCCCCATACAGTCTTAAGTGC...CTCATTGCTCTCTGCTCTCCCTTGTGCCAAACTGACAGCAACATCACCAAATTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000004985.11
ENSMUST00000232705.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR CCA 90 bp AAGAAATGTCAAGAGCAGAAGCCTCTGAGAGCTGCGTTGGCTTGTCAGTCAGCTGACTTGGCAGGGAATTaGGGCTGCTCACTGTTTTCC +
Preference number: 4 (lower is better)
Translates to: KKCQEQKPLRAALACQSADLAGN*GCSLFS
Trigger: GGAAAACAGTGAGCAGCCCCAATTCCCTGCCAAGTC...AGCTGACTGACAAGCCAACGCAGCTCTCAGAGGCTTCTGCTCTTGACATTTCTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000004985.11
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233709.2
CDS-3UTR CCA 90 bp CAACATGGCAATTGGCGGTCTGCAAACCCGCCTGCGGCTTTGGTGCTTAAAGAAATGACATTGCTATTGTaGCACTCATCGTCCAGGCAC +
Preference number: 4 (lower is better)
Translates to: QHGNWRSANPPAALVLKEMTLLL*HSSSRH
Trigger: GTGCCTGGACGATGAGTGCCACAATAGCAATGTCAT...TTCTTTAAGCACCAAAGCCGCAGGCGGGTTTGCAGACCGCCAATTGCCATGTTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000004985.11
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233709.2
CDS-3UTR CCA 90 bp AAGGAGACAGAAAGGGAGAAGCCCCAAGATCTTGACACAGGTTTAGACAAGGGTTTCACTGAGGCTCCTTaGGGAGTCGCCCTTTCTCCT +
Preference number: 4 (lower is better)
Translates to: KETEREKPQDLDTGLDKGFTEAP*GVALSP
Trigger: AGGAGAAAGGGCGACTCCCCAAGGAGCCTCAGTGAA...ACCCTTGTCTAAACCTGTGTCAAGATCTTGGGGCTTCTCCCTTTCTGTCTCCTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000004985.11
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233709.2
CDS-3UTR CCA 90 bp GGGAACCACATGATTGGTCAATATTGGGTCTTGCCCTCGGAGACCCAGTCCAGTCGGACAGCTGCTCGGTaGAAAATTGTGTCTTTAGCA +
Preference number: 4 (lower is better)
Translates to: GNHMIGQYWVLPSETQSSRTAAR*KIVSLA
Trigger: TGCTAAAGACACAATTTTCCACCGAGCAGCTGTCCG...ACTGGACTGGGTCTCCGAGGGCAAGACCCAATATTGACCAATCATGTGGTTCCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000004985.11
ENSMUST00000156029.8
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
3UTR CAA 72 bp GTGGCTGTGCTGTTTGCTGGACAGAACCTGGCCCTCTaGGTGAGTTTTGTTGGTTCCCTTTTAAACTCTGGC +
Preference number: 4 (lower is better)
Translates to: VAVLFAGQNLAL*VSFVGSLLNSG
Trigger: GCCAGAGTTTAAAAGGGAACCAACAAAACTCACCAAGAGGGCCAGGTTCTGTCCAGCAAACAGCACAGCCAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 8 transcripts:
ENSMUST00000004985.11
ENSMUST00000140973.9
ENSMUST00000156029.8
ENSMUST00000232997.2
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233709.2
CDS-3UTR TCA 90 bp CAACATGGCAATTGGCGGTCTGCAAACCCGCCTGCGGCTTTGGTGCTTAAAGAACATTCGGTAATATCCTaGGCAGTCAGCTCATCTTCA +
Preference number: 4 (lower is better)
Translates to: QHGNWRSANPPAALVLKEHSVIS*AVSSSS
Trigger: TGAAGATGAGCTGACTGCTCAGGATATTACCGAATG...TTCTTTAAGCACCAAAGCCGCAGGCGGGTTTGCAGACCGCCAATTGCCATGTTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000004985.11
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233709.2
CDS-3UTR TCA 90 bp CATCTCTGGGATCAATGTCAGAACCTTGCCTGCCCTGAGGTATGGTTAGGTGGGCATTCGGTAATATCCTaGGCAGTCAGCTCATCTTCA +
Preference number: 4 (lower is better)
Translates to: HLWDQCQNLACPEVWLGGHSVIS*AVSSSS
Trigger: TGAAGATGAGCTGACTGCTCAGGATATTACCGAATG...CCCACCTAACCATACCTCAGGGCAGGCAAGGTTCTGACATTGATCCCAGAGATG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000004985.11
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR TCA 90 bp TCAGCTGTTTCTACTTCTAAGTGGTTCTTCAGTGGAATATCCCCAGGGACCTCGTGTGAAGCCGCTGCATaGACTGGGTCTTCCTCTGAA +
Preference number: 4 (lower is better)
Translates to: SAVSTSKWFFSGISPGTSCEAAA*TGSSSE
Trigger: TTCAGAGGAAGACCCAGTTCATGCAGCGGCTTCACA...CGAGGTCCCTGGGGATATTCCACTGAAGAACCACTTAGAAGTAGAAACAGCTGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000004985.11
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR TCA 90 bp GAGGGAAGGATTCCGAGACTGAAAAATAGAGACAGAGGAGATAGTGTTGGGGGATGTGAAGCCGCTGCATaGACTGGGTCTTCCTCTGAA +
Preference number: 4 (lower is better)
Translates to: EGRIPRLKNRDRGDSVGGCEAAA*TGSSSE
Trigger: TTCAGAGGAAGACCCAGTTCATGCAGCGGCTTCACA...TCCCCCAACACTATCTCCTCTGTCTCTATTTTTCAGTCTCGGAATCCTTCCCTC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 5 transcripts:
ENSMUST00000004985.11
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233709.2
CDS-3UTR TCA 90 bp CTGTTTCTACTTCTAAGTGGTTCTTCAGTGGAATATCCCCAGGGACCTCGGGTGGTTTCTGCCAGTATTTaGGCTCCTCCTTCACTGCAC +
Preference number: 4 (lower is better)
Translates to: LFLLLSGSSVEYPQGPRVVSASI*APPSLH
Trigger: GTGCAGTGAAGGAGGAGCTCAAATACTGGCAGAAAC...CACCCGAGGTCCCTGGGGATATTCCACTGAAGAACCACTTAGAAGTAGAAACAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000004985.11
ENSMUST00000156029.8
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR TCA 90 bp TCAGCTGTTTCTACTTCTAAGTGGTTCTTCAGTGGAATATCCCCAGGGACCTCGGGCCTTCTAGCATCTTaGGCTTGTCCACAGTGTCCT +
Preference number: 4 (lower is better)
Translates to: SAVSTSKWFFSGISPGTSGLLAS*ACPQCP
Trigger: AGGACACTGTGGACAAGCTCAAGATGCTAGAAGGCC...CGAGGTCCCTGGGGATATTCCACTGAAGAACCACTTAGAAGTAGAAACAGCTGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000004985.11
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
CDS-3UTR TCA 90 bp GGGACTCGGAGAGAGGGAAGGATTCCGAGACTGAAAAATAGAGACAGAGGAGATATAGGCCACTTGTACTaGCTTCCGGATGCTGGTCTT +
Preference number: 4 (lower is better)
Translates to: GTRREGRIPRLKNRDRGDIGHLY*LPDAGL
Trigger: AAGACCAGCATCCGGAAGTCAGTACAAGTGGCCTAT...ATCTCCTCTGTCTCTATTTTTCAGTCTCGGAATCCTTCCCTCTCTCCGAGTCCC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000004985.11
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
CDS-3UTR GCA 90 bp AAGGAGACAGAAAGGGAGAAGCCCCAAGATCTTGACACAGGTTTAGACAAGGGTGTACTGACTTCCGGATaGTGGTCTTGCGGCCTTCTA +
Preference number: 4 (lower is better)
Translates to: KETEREKPQDLDTGLDKGVLTSG*WSCGLL
Trigger: TAGAAGGCCGCAAGACCAGCATCCGGAAGTCAGTAC...ACCCTTGTCTAAACCTGTGTCAAGATCTTGGGGCTTCTCCCTTTCTGTCTCCTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000004985.11
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
CDS-3UTR CCA 90 bp CCTTCTAGCATCTTGAGCTTGTCCACAGTGTCCTCCACACCCAGGGGCAGGACTAGTGATGATCTTAAGTaGGTCATAAATGCTGATCCG +
Preference number: 4 (lower is better)
Translates to: PSSILSLSTVSSTPRGRTSDDLK*VINADP
Trigger: CGGATCAGCATTTATGACCCACTTAAGATCATCACT...AGTCCTGCCCCTGGGTGTGGAGGACACTGTGGACAAGCTCAAGATGCTAGAAGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR CCA 90 bp GAGGGAAGGATTCCGAGACTGAAAAATAGAGACAGAGGAGATAGTGTTGGGGGAGACTTGGCAGGGAATTaGGGCTGCTCACTGTTTTCC +
Preference number: 4 (lower is better)
Translates to: EGRIPRLKNRDRGDSVGGDLAGN*GCSLFS
Trigger: GGAAAACAGTGAGCAGCCCCAATTCCCTGCCAAGTC...TCCCCCAACACTATCTCCTCTGTCTCTATTTTTCAGTCTCGGAATCCTTCCCTC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 5 transcripts:
ENSMUST00000004985.11
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233709.2
CDS-3UTR CCA 90 bp GTTGGTTCCCTTTTAAACTCTGGCTCGAGTCCCAAAAGTGTAAGAAGTTGGTGGACTACGTGGGCCCAGTaGCCATCACTGGTCTGTTTG +
Preference number: 4 (lower is better)
Translates to: VGSLLNSGSSPKSVRSWWTTWAQ*PSLVCL
Trigger: CAAACAGACCAGTGATGGCCACTGGGCCCACGTAGT...CCACCAACTTCTTACACTTTTGGGACTCGAGCCAGAGTTTAAAAGGGAACCAAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000004985.11
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233709.2
CDS-3UTR CCA 90 bp TTTGTTGGTTCCCTTTTAAACTCTGGCTCGAGTCCCAAAAGTGTAAGAAGTTGGATGGCGCAGACTACGTaGGCCCAGTGGCCATCACTG +
Preference number: 4 (lower is better)
Translates to: FVGSLLNSGSSPKSVRSWMAQTT*AQWPSL
Trigger: CAGTGATGGCCACTGGGCCCACGTAGTCTGCGCCAT...CCAACTTCTTACACTTTTGGGACTCGAGCCAGAGTTTAAAAGGGAACCAACAAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000004985.11
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233709.2
CDS-3UTR CCA 90 bp CTGTTTCTACTTCTAAGTGGTTCTTCAGTGGAATATCCCCAGGGACCTCGGGTGTGCTCAGCATTTCTCTaGGACTGTAAGTGGGAGTGC +
Preference number: 4 (lower is better)
Translates to: LFLLLSGSSVEYPQGPRVCSAFL*DCKWEC
Trigger: GCACTCCCACTTACAGTCCCAGAGAAATGCTGAGCA...CACCCGAGGTCCCTGGGGATATTCCACTGAAGAACCACTTAGAAGTAGAAACAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000004985.11
ENSMUST00000156029.8
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR CCA 90 bp AGAGCAGAAGCCTCTGAGAGCTGCGTTGGCTTGTCAGTCAGCTTTCCTCATTCAAAAAGTCTTCCAATCTaGGTGATTCGGGCAAGTGGG +
Preference number: 4 (lower is better)
Translates to: RAEASESCVGLSVSFPHSKSLPI*VIRASG
Trigger: CCCACTTGCCCGAATCACCCAGATTGGAAGACTTTT...TGAATGAGGAAAGCTGACTGACAAGCCAACGCAGCTCTCAGAGGCTTCTGCTCT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000004985.11
ENSMUST00000156029.8
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233709.2
CDS-3UTR TCA 90 bp TTTTGGCACACAGCAGCCCTCCAGGGGAACCACATGATTGGTCAATATTGGGTCCATTCGGTAATATCCTaGGCAGTCAGCTCATCTTCA +
Preference number: 4 (lower is better)
Translates to: FWHTAALQGNHMIGQYWVHSVIS*AVSSSS
Trigger: TGAAGATGAGCTGACTGCTCAGGATATTACCGAATG...GACCCAATATTGACCAATCATGTGGTTCCCCTGGAGGGCTGCTGTGTGCCAAAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000004985.11
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR TCA 90 bp CTGGCACATCTCTGGGATCAATGTCAGAACCTTGCCTGCCCTGAGGTATGGTTACATTCGGTAATATCCTaGGCAGTCAGCTCATCTTCA +
Preference number: 4 (lower is better)
Translates to: LAHLWDQCQNLACPEVWLHSVIS*AVSSSS
Trigger: TGAAGATGAGCTGACTGCTCAGGATATTACCGAATG...TAACCATACCTCAGGGCAGGCAAGGTTCTGACATTGATCCCAGAGATGTGCCAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000004985.11
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR TCA 90 bp ATGTCAAGAGCAGAAGCCTCTGAGAGCTGCGTTGGCTTGTCAGTCAGCTTTCCTCATTCGGTAATATCCTaGGCAGTCAGCTCATCTTCA +
Preference number: 4 (lower is better)
Translates to: MSRAEASESCVGLSVSFPHSVIS*AVSSSS
Trigger: TGAAGATGAGCTGACTGCTCAGGATATTACCGAATG...AGGAAAGCTGACTGACAAGCCAACGCAGCTCTCAGAGGCTTCTGCTCTTGACAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000004985.11
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233709.2
CDS-3UTR TCA 90 bp GCATCCTGTCCTAAAAGAGCAGTTTTTAAAGTGGGACTCGGAGAGAGGGAAGGAGTTTCTGCCAGTATTTaGGCTCCTCCTTCACTGCAC +
Preference number: 4 (lower is better)
Translates to: ASCPKRAVFKVGLGEREGVSASI*APPSLH
Trigger: GTGCAGTGAAGGAGGAGCTCAAATACTGGCAGAAAC...TCCTTCCCTCTCTCCGAGTCCCACTTTAAAAACTGCTCTTTTAGGACAGGATGC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 6 transcripts:
ENSMUST00000004985.11
ENSMUST00000156029.8
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233709.2
CDS-3UTR GCA 90 bp TCAGCTGTTTCTACTTCTAAGTGGTTCTTCAGTGGAATATCCCCAGGGACCTCGGCAGGGAATTGGGGCTaGTCACTGTTTTCCTTGTTG +
Preference number: 4 (lower is better)
Translates to: SAVSTSKWFFSGISPGTSAGNWG*SLFSLL
Trigger: CAACAAGGAAAACAGTGAGCAGCCCCAATTCCCTGC...CGAGGTCCCTGGGGATATTCCACTGAAGAACCACTTAGAAGTAGAAACAGCTGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 7 transcripts:
ENSMUST00000004985.11
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR GCA 90 bp GCCCTCTTGGTGAGTTTTGTTGGTTCCCTTTTAAACTCTGGCTCGAGTCCCAAAGCAGGGAATTGGGGCTaGTCACTGTTTTCCTTGTTG +
Preference number: 4 (lower is better)
Translates to: ALLVSFVGSLLNSGSSPKAGNWG*SLFSLL
Trigger: CAACAAGGAAAACAGTGAGCAGCCCCAATTCCCTGC...TTTGGGACTCGAGCCAGAGTTTAAAAGGGAACCAACAAAACTCACCAAGAGGGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 5 transcripts:
ENSMUST00000004985.11
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233709.2
CDS-3UTR GCA 90 bp CCCAAACTACATTCCGAGTCAGACCCGCTTTCCGTGTGTTTTCCAAAGCCGTTACCAGCCCTTTCTGCTTaGAGATATAGCAGGTTAGCT +
Preference number: 4 (lower is better)
Translates to: PKLHSESDPLSVCFPKPLPALSA*RYSRLA
Trigger: AGCTAACCTGCTATATCTGCAAGCAGAAAGGGCTGG...TAACGGCTTTGGAAAACACACGGAAAGCGGGTCTGACTCGGAATGTAGTTTGGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000232997.2
CDS-3UTR GCA 90 bp CTGGCACATCTCTGGGATCAATGTCAGAACCTTGCCTGCCCTGAGGTATGGTTATTCAGCAAAGATGTGTaGAGAGTCTTTCTCCTGCAG +
Preference number: 4 (lower is better)
Translates to: LAHLWDQCQNLACPEVWLFSKDV*RVFLLQ
Trigger: CTGCAGGAGAAAGACTCTGCACACATCTTTGCTGAA...TAACCATACCTCAGGGCAGGCAAGGTTCTGACATTGATCCCAGAGATGTGCCAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000004985.11
ENSMUST00000156029.8
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR CCA 90 bp CAATATTGGGTCTTGCCCTCGGAGACCCAGTCCAGTCAGGGCCTGCCATTAGAAAGTGATGATCTTAAGTaGGTCATAAATGCTGATCCG +
Preference number: 4 (lower is better)
Translates to: QYWVLPSETQSSQGLPLESDDLK*VINADP
Trigger: CGGATCAGCATTTATGACCCACTTAAGATCATCACT...TTCTAATGGCAGGCCCTGACTGGACTGGGTCTCCGAGGGCAAGACCCAATATTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000004985.11
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR CCA 90 bp CAAGCGCCTGGCAGACATCCATCTAATGTAGCAGCTGGCCAGGAAGGAAATGGGAGTGATGATCTTAAGTaGGTCATAAATGCTGATCCG +
Preference number: 4 (lower is better)
Translates to: QAPGRHPSNVAAGQEGNGSDDLK*VINADP
Trigger: CGGATCAGCATTTATGACCCACTTAAGATCATCACT...CCCATTTCCTTCCTGGCCAGCTGCTACATTAGATGGATGTCTGCCAGGCGCTTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000004985.11
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR CCA 90 bp GGGACTCGGAGAGAGGGAAGGATTCCGAGACTGAAAAATAGAGACAGAGGAGATATGACATTGCTATTGTaGCACTCATCGTCCAGGCAC +
Preference number: 4 (lower is better)
Translates to: GTRREGRIPRLKNRDRGDMTLLL*HSSSRH
Trigger: GTGCCTGGACGATGAGTGCCACAATAGCAATGTCAT...ATCTCCTCTGTCTCTATTTTTCAGTCTCGGAATCCTTCCCTCTCTCCGAGTCCC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000004985.11
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233709.2
CDS-3UTR CCA 90 bp GTTGGTTCCCTTTTAAACTCTGGCTCGAGTCCCAAAAGTGTAAGAAGTTGGTGGGTAAGAGGGTATCTGTaGGACAGTGACCATGGGGAG +
Preference number: 4 (lower is better)
Translates to: VGSLLNSGSSPKSVRSWWVRGYL*DSDHGE
Trigger: CTCCCCATGGTCACTGTCCCACAGATACCCTCTTAC...CCACCAACTTCTTACACTTTTGGGACTCGAGCCAGAGTTTAAAAGGGAACCAAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000004985.11
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233709.2
CDS-3UTR CCA 90 bp GCATCCTGTCCTAAAAGAGCAGTTTTTAAAGTGGGACTCGGAGAGAGGGAAGGATGCTCAGCATTTCTCTaGGACTGTAAGTGGGAGTGC +
Preference number: 4 (lower is better)
Translates to: ASCPKRAVFKVGLGEREGCSAFL*DCKWEC
Trigger: GCACTCCCACTTACAGTCCCAGAGAAATGCTGAGCA...TCCTTCCCTCTCTCCGAGTCCCACTTTAAAAACTGCTCTTTTAGGACAGGATGC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 6 transcripts:
ENSMUST00000004985.11
ENSMUST00000156029.8
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233709.2
CDS-3UTR CCA 90 bp TGCCACAGCAGATCCGAGCCGCATCCTGTCCTAAAAGAGCAGTTTTTAAAGTGGGAATTCCAGGTAATCTaGAACCTCACTCAGGCTGAC +
Preference number: 4 (lower is better)
Translates to: CHSRSEPHPVLKEQFLKWEFQVI*NLTQAD
Trigger: GTCAGCCTGAGTGAGGTTCCAGATTACCTGGAATTC...CCACTTTAAAAACTGCTCTTTTAGGACAGGATGCGGCTCGGATCTGCTGTGGCA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000004985.11
ENSMUST00000156029.8
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233709.2
CDS-3UTR CCA 90 bp GATTGGTCAATATTGGGTCTTGCCCTCGGAGACCCAGTCCAGTCAGGGCCTGCCAGTAGAAAAATCCATTaGCTTGGATATGAATTCCAG +
Preference number: 4 (lower is better)
Translates to: DWSILGLALGDPVQSGPASRKIH*LGYEFQ
Trigger: CTGGAATTCATATCCAAGCCAATGGATTTTTCTACT...GGCAGGCCCTGACTGGACTGGGTCTCCGAGGGCAAGACCCAATATTGACCAATC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 6 transcripts:
ENSMUST00000004985.11
ENSMUST00000156029.8
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR CCA 90 bp GAGACAGAAAGGGAGAAGCCCCAAGATCTTGACACAGGTTTAGACAAGGGTCACCGGACAGCTGCTCGGTaGAAAATTGTGTCTTTAGCA +
Preference number: 4 (lower is better)
Translates to: ETEREKPQDLDTGLDKGHRTAAR*KIVSLA
Trigger: TGCTAAAGACACAATTTTCCACCGAGCAGCTGTCCG...GTGACCCTTGTCTAAACCTGTGTCAAGATCTTGGGGCTTCTCCCTTTCTGTCTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000004985.11
ENSMUST00000156029.8
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233709.2
CDS-3UTR CCA 90 bp GCTGTTTCTACTTCTAAGTGGTTCTTCAGTGGAATATCCCCAGGGACCTCGGGTCGGACAGCTGCTCGGTaGAAAATTGTGTCTTTAGCA +
Preference number: 4 (lower is better)
Translates to: AVSTSKWFFSGISPGTSGRTAAR*KIVSLA
Trigger: TGCTAAAGACACAATTTTCCACCGAGCAGCTGTCCG...ACCCGAGGTCCCTGGGGATATTCCACTGAAGAACCACTTAGAAGTAGAAACAGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000004985.11
ENSMUST00000156029.8
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR GCA 90 bp TGCCACAGCAGATCCGAGCCGCATCCTGTCCTAAAAGAGCAGTTTTTAAAGTGGTTCAGCAAAGATGTGTaGAGAGTCTTTCTCCTGCAG +
Preference number: 4 (lower is better)
Translates to: CHSRSEPHPVLKEQFLKWFSKDV*RVFLLQ
Trigger: CTGCAGGAGAAAGACTCTGCACACATCTTTGCTGAA...CCACTTTAAAAACTGCTCTTTTAGGACAGGATGCGGCTCGGATCTGCTGTGGCA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 6 transcripts:
ENSMUST00000004985.11
ENSMUST00000156029.8
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233709.2
CDS-3UTR GCA 90 bp AGATCCGAGCCGCATCCTGTCCTAAAAGAGCAGTTTTTAAAGTGGGACTCGGAGTTCAGCAAAGATGTGTaGAGAGTCTTTCTCCTGCAG +
Preference number: 4 (lower is better)
Translates to: RSEPHPVLKEQFLKWDSEFSKDV*RVFLLQ
Trigger: CTGCAGGAGAAAGACTCTGCACACATCTTTGCTGAA...CTCCGAGTCCCACTTTAAAAACTGCTCTTTTAGGACAGGATGCGGCTCGGATCT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 6 transcripts:
ENSMUST00000004985.11
ENSMUST00000156029.8
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233709.2
CDS-3UTR CCA 90 bp GGGAACCACATGATTGGTCAATATTGGGTCTTGCCCTCGGAGACCCAGTCCAGTAGTGATGATCTTAAGTaGGTCATAAATGCTGATCCG +
Preference number: 4 (lower is better)
Translates to: GNHMIGQYWVLPSETQSSSDDLK*VINADP
Trigger: CGGATCAGCATTTATGACCCACTTAAGATCATCACT...ACTGGACTGGGTCTCCGAGGGCAAGACCCAATATTGACCAATCATGTGGTTCCC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000004985.11
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR CCA 90 bp CCGCACACCACAGCCCATAGAACATTTATTTCTCGGAGAGAAAATAAGACATCACTTTATGGCACTGAATaGCCGCGCCCAGCCCTTTCT +
Preference number: 4 (lower is better)
Translates to: PHTTAHRTFISRRENKTSLYGTE*PRPALS
Trigger: AGAAAGGGCTGGGCGCGGCCATTCAGTGCCATAAAG...TGATGTCTTATTTTCTCTCCGAGAAATAAATGTTCTATGGGCTGTGGTGTGCGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000004985.11
CDS-3UTR CCA 90 bp TTTGTTGGTTCCCTTTTAAACTCTGGCTCGAGTCCCAAAAGTGTAAGAAGTTGGTTCACTGAGGCTCCTTaGGGAGTCGCCCTTTCTCCT +
Preference number: 4 (lower is better)
Translates to: FVGSLLNSGSSPKSVRSWFTEAP*GVALSP
Trigger: AGGAGAAAGGGCGACTCCCCAAGGAGCCTCAGTGAA...CCAACTTCTTACACTTTTGGGACTCGAGCCAGAGTTTAAAAGGGAACCAACAAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000004985.11
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233709.2
CDS-3UTR CCA 90 bp GAGGGAAGGATTCCGAGACTGAAAAATAGAGACAGAGGAGATAGTGTTGGGGGAGAATTCCAGGTAATCTaGAACCTCACTCAGGCTGAC +
Preference number: 4 (lower is better)
Translates to: EGRIPRLKNRDRGDSVGGEFQVI*NLTQAD
Trigger: GTCAGCCTGAGTGAGGTTCCAGATTACCTGGAATTC...TCCCCCAACACTATCTCCTCTGTCTCTATTTTTCAGTCTCGGAATCCTTCCCTC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 5 transcripts:
ENSMUST00000004985.11
ENSMUST00000156029.8
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233709.2
CDS-3UTR GCA 90 bp CTGGCACATCTCTGGGATCAATGTCAGAACCTTGCCTGCCCTGAGGTATGGTTATCCTTCTTGATCTTCTaGTTCAAACTCATCTTACCC +
Preference number: 4 (lower is better)
Translates to: LAHLWDQCQNLACPEVWLSFLIF*FKLILP
Trigger: GGGTAAGATGAGTTTGAAGCAGAAGATCAAGAAGGA...TAACCATACCTCAGGGCAGGCAAGGTTCTGACATTGATCCCAGAGATGTGCCAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000004985.11
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR CCA 90 bp GTCAACATGGCAATTGGCGGTCTGCAAACCCGCCTGCGGCTTTGGTGCTTAAAGAGTAGAAAAATCCATTaGCTTGGATATGAATTCCAG +
Preference number: 4 (lower is better)
Translates to: VNMAIGGLQTRLRLWCLKSRKIH*LGYEFQ
Trigger: CTGGAATTCATATCCAAGCCAATGGATTTTTCTACT...CTTTAAGCACCAAAGCCGCAGGCGGGTTTGCAGACCGCCAATTGCCATGTTGAC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000004985.11
ENSMUST00000156029.8
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233709.2
CDS-3UTR CCA 90 bp CAATATTGGGTCTTGCCCTCGGAGACCCAGTCCAGTCAGGGCCTGCCATTAGAAAGTAGAAAAATCCATTaGCTTGGATATGAATTCCAG +
Preference number: 4 (lower is better)
Translates to: QYWVLPSETQSSQGLPLESRKIH*LGYEFQ
Trigger: CTGGAATTCATATCCAAGCCAATGGATTTTTCTACT...TTCTAATGGCAGGCCCTGACTGGACTGGGTCTCCGAGGGCAAGACCCAATATTG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 6 transcripts:
ENSMUST00000004985.11
ENSMUST00000156029.8
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
3UTR CAA 72 bp ATGTCAAGAGCAGAAGCCTCTGAGAGCTGCGTTGGCTaGTCAGTCAGCTTTCCTCATTCACAGTTTGGTTTT +
Preference number: 4 (lower is better)
Translates to: MSRAEASESCVG*SVSFPHSQFGF
Trigger: AAAACCAAACTGTGAATGAGGAAAGCTGACTGACAAGCCAACGCAGCTCTCAGAGGCTTCTGCTCTTGACAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000004985.11
ENSMUST00000140973.9
ENSMUST00000156029.8
ENSMUST00000232997.2
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233709.2
3UTR CAA 72 bp TGCATATATAGCAGAGGATGGCCTTGTCAGGCATCATaGGGAGAAGAGGTCTTTGATCCAATGAAGGCTGGA +
Preference number: 4 (lower is better)
Translates to: CIYSRGWPCQAS*GEEVFDPMKAG
Trigger: TCCAGCCTTCATTGGATCAAAGACCTCTTCTCCCAATGATGCCTGACAAGGCCATCCTCTGCTATATATGCA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000004985.11
CDS-3UTR GCA 90 bp ATCAATTTGGTGATGTTGCTGTCAGTTTGGCACAAGGGAGAGCAGAGAGCAATGTTCAGCAAAGATGTGTaGAGAGTCTTTCTCCTGCAG +
Preference number: 4 (lower is better)
Translates to: INLVMLLSVWHKGEQRAMFSKDV*RVFLLQ
Trigger: CTGCAGGAGAAAGACTCTGCACACATCTTTGCTGAA...CATTGCTCTCTGCTCTCCCTTGTGCCAAACTGACAGCAACATCACCAAATTGAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000004985.11
ENSMUST00000156029.8
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR CCA 90 bp GGCAGACATCCATCTAATGTAGCAGCTGGCCAGGAAGGAAATGGGACATCAAAGAGTGATGATCTTAAGTaGGTCATAAATGCTGATCCG +
Preference number: 4 (lower is better)
Translates to: GRHPSNVAAGQEGNGTSKSDDLK*VINADP
Trigger: CGGATCAGCATTTATGACCCACTTAAGATCATCACT...CTTTGATGTCCCATTTCCTTCCTGGCCAGCTGCTACATTAGATGGATGTCTGCC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000004985.11
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR CCA 90 bp CCTGGCAGACATCCATCTAATGTAGCAGCTGGCCAGGAAGGAAATGGGACATCAAGTAGAAAAATCCATTaGCTTGGATATGAATTCCAG +
Preference number: 4 (lower is better)
Translates to: PGRHPSNVAAGQEGNGTSSRKIH*LGYEFQ
Trigger: CTGGAATTCATATCCAAGCCAATGGATTTTTCTACT...TGATGTCCCATTTCCTTCCTGGCCAGCTGCTACATTAGATGGATGTCTGCCAGG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 6 transcripts:
ENSMUST00000004985.11
ENSMUST00000156029.8
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR CCA 90 bp ATGTCAAGAGCAGAAGCCTCTGAGAGCTGCGTTGGCTTGTCAGTCAGCTTTCCTAGTAGAAAAATCCATTaGCTTGGATATGAATTCCAG +
Preference number: 4 (lower is better)
Translates to: MSRAEASESCVGLSVSFPSRKIH*LGYEFQ
Trigger: CTGGAATTCATATCCAAGCCAATGGATTTTTCTACT...AGGAAAGCTGACTGACAAGCCAACGCAGCTCTCAGAGGCTTCTGCTCTTGACAT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000004985.11
ENSMUST00000156029.8
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233709.2
3UTR CAA 72 bp TGCCAAGGTGTCTGCACTGTTTATGCAGCACAAGGGTaGTCTGCATGCTGGACGCACTTTATTATGTTATAT +
Preference number: 4 (lower is better)
Translates to: CQGVCTVYAAQG*SACWTHFIMLY
Trigger: ATATAACATAATAAAGTGCGTCCAGCATGCAGACAACCCTTGTGCTGCATAAACAGTGCAGACACCTTGGCA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000004985.11
CDS-3UTR CCA 90 bp GGGACTCGGAGAGAGGGAAGGATTCCGAGACTGAAAAATAGAGACAGAGGAGATAGTAGAAAAATCCATTaGCTTGGATATGAATTCCAG +
Preference number: 4 (lower is better)
Translates to: GTRREGRIPRLKNRDRGDSRKIH*LGYEFQ
Trigger: CTGGAATTCATATCCAAGCCAATGGATTTTTCTACT...ATCTCCTCTGTCTCTATTTTTCAGTCTCGGAATCCTTCCCTCTCTCCGAGTCCC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 5 transcripts:
ENSMUST00000004985.11
ENSMUST00000156029.8
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233709.2
CDS-3UTR CCA 90 bp ATAAAGTCACTTTCTACAATAAATAGAGCATCATGTGCTTCACAGCAGACCAGACTGCCTGAGCCACTGTaGTCAGAGTCTCCATTCACA +
Preference number: 4 (lower is better)
Translates to: IKSLSTINRASCASQQTRLPEPL*SESPFT
Trigger: TGTGAATGGAGACTCTGACCACAGTGGCTCAGGCAG...TCTGGTCTGCTGTGAAGCACATGATGCTCTATTTATTGTAGAAAGTGACTTTAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000004985.11
ENSMUST00000156029.8
CDS-3UTR CAA 90 bp GGGCGGGTGCTGGAGGGCAGTGCCATGCCGCACGCCACCCGCCACCCGCCACCCTTCCCACGGCTGCGTTaGGGAGGCGTCAGGCCACTG +
Preference number: 5 (lower is better)
Translates to: GRVLEGSAMPHATRHPPPFPRLR*GGVRPL
Trigger: CAGTGGCCTGACGCCTCCCAAACGCAGCCGTGGGAA...GGGTGGCGGGTGGCGGGTGGCGTGCGGCATGGCACTGCCCTCCAGCACCCGCCC
74% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000004985.11
ENSMUST00000156029.8
ENSMUST00000233646.2
ENSMUST00000233709.2
CDS-3UTR CAA 90 bp CACCCGCCACCCGCCACCCGCCGCCCGTGCCGCGGTGATCATGCTGATGCAGTGGGGATGGGGACACCGTaGTGCAGGAGGCCCTCCCGG +
Preference number: 5 (lower is better)
Translates to: HPPPATRRPCRGDHADAVGMGTP*CRRPSR
Trigger: CCGGGAGGGCCTCCTGCACAACGGTGTCCCCATCCC...CACTGCATCAGCATGATCACCGCGGCACGGGCGGCGGGTGGCGGGTGGCGGGTG
73% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000004985.11
ENSMUST00000156029.8
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
CDS-3UTR CAA 90 bp CACCCGCCACCCGCCACCCGCCGCCCGTGCCGCGGTGATCATGCTGATGCAGTGTTCCCACGGCTGCGTTaGGGAGGCGTCAGGCCACTG +
Preference number: 5 (lower is better)
Translates to: HPPPATRRPCRGDHADAVFPRLR*GGVRPL
Trigger: CAGTGGCCTGACGCCTCCCAAACGCAGCCGTGGGAA...CACTGCATCAGCATGATCACCGCGGCACGGGCGGCGGGTGGCGGGTGGCGGGTG
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000004985.11
ENSMUST00000156029.8
ENSMUST00000233646.2
ENSMUST00000233709.2
CDS-3UTR CAA 90 bp GGGCGGTGTGGGGGAAGGGAAGCTCTGAGGGTTCCCGAGGGACCCTGGCACATCTTCCCACGGCTGCGTTaGGGAGGCGTCAGGCCACTG +
Preference number: 5 (lower is better)
Translates to: GRCGGREALRVPEGPWHIFPRLR*GGVRPL
Trigger: CAGTGGCCTGACGCCTCCCAAACGCAGCCGTGGGAA...GATGTGCCAGGGTCCCTCGGGAACCCTCAGAGCTTCCCTTCCCCCACACCGCCC
68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000004985.11
ENSMUST00000156029.8
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR CAA 90 bp TGGGGGAAGGGAAGCTCTGAGGGTTCCCGAGGGACCCTGGCACATCTCTGGGATGGGATGGGGACACCGTaGTGCAGGAGGCCCTCCCGG +
Preference number: 5 (lower is better)
Translates to: WGKGSSEGSRGTLAHLWDGMGTP*CRRPSR
Trigger: CCGGGAGGGCCTCCTGCACAACGGTGTCCCCATCCC...ATCCCAGAGATGTGCCAGGGTCCCTCGGGAACCCTCAGAGCTTCCCTTCCCCCA
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 6 transcripts:
ENSMUST00000004985.11
ENSMUST00000156029.8
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
CDS CCA 90 bp CCAGGAAGGGCACACGAGACAGGGCTGGCTTCCCACGGCTGCGTTTaGGAGGCGTCAGGCCACTGCCAGCTTCAAACGCCAGTCCTCCAC +
Preference number: 5 (lower is better)
Translates to: PGRAHETGLASHGCV*EASGHCQLQTPVLH
Trigger: GTGGAGGACTGGCGTTTGAAGCTGGCAGTGGCCTGACGCCTCCCAAACGCAGCCGTGGGAAGCCAGCCCTGTCTCGTGTGCCCTTCCTGG
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000004985.11
ENSMUST00000156029.8
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR CAA 90 bp GGGCGGTGTGGGGGAAGGGAAGCTCTGAGGGTTCCCGAGGGACCCTGGCACATCCGGGCGGGTGGAATGTaGTCGATGCCCTCAATAGGC +
Preference number: 5 (lower is better)
Translates to: GRCGGREALRVPEGPWHIRAGGM*SMPSIG
Trigger: GCCTATTGAGGGCATCGACAACATTCCACCCGCCCG...GATGTGCCAGGGTCCCTCGGGAACCCTCAGAGCTTCCCTTCCCCCACACCGCCC
66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 7 transcripts:
ENSMUST00000004985.11
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR CAA 90 bp GGGCGGTGTGGGGGAAGGGAAGCTCTGAGGGTTCCCGAGGGACCCTGGCACATCCCCTCCCGGGGCATCTaGGGATCGATGATCAAGGCA +
Preference number: 5 (lower is better)
Translates to: GRCGGREALRVPEGPWHIPSRGI*GSMIKA
Trigger: TGCCTTGATCATCGATCCCAAGATGCCCCGGGAGGG...GATGTGCCAGGGTCCCTCGGGAACCCTCAGAGCTTCCCTTCCCCCACACCGCCC
66% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 5 transcripts:
ENSMUST00000004985.11
ENSMUST00000156029.8
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
CDS-3UTR CAA 90 bp GGCAGCAATCCCAGAGGGCGGGTGCTGGAGGGCAGTGCCATGCCGCACGCCACCCGGCCTTCTAGCATCTaGAGCTTGTCCACAGTGTCC +
Preference number: 5 (lower is better)
Translates to: GSNPRGRVLEGSAMPHATRPSSI*SLSTVS
Trigger: GGACACTGTGGACAAGCTCAAGATGCTAGAAGGCCG...GGTGGCGTGCGGCATGGCACTGCCCTCCAGCACCCGCCCTCTGGGATTGCTGCC
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000004985.11
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
CDS GCA 90 bp CACCTTCCAGGAAGGGCACACGAGACAGGGCTGGCTTCCCACGGCTaGGTTTGGGAGGCGTCAGGCCACTGCCAGCTTCAAACGCCAGTC +
Preference number: 5 (lower is better)
Translates to: HLPGRAHETGLASHG*VWEASGHCQLQTPV
Trigger: GACTGGCGTTTGAAGCTGGCAGTGGCCTGACGCCTCCCAAACGCAGCCGTGGGAAGCCAGCCCTGTCTCGTGTGCCCTTCCTGGAAGGTG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000004985.11
ENSMUST00000156029.8
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS CCA 90 bp AGCCGGTCCACCAGCAGCTCGAAGGTGTCTGCCGACACCGAGCTGTaGCCGTCTGCTCGGCGCTTCTCGTTGACCATGTCTAGCCAGGCA +
Preference number: 5 (lower is better)
Translates to: SRSTSSSKVSADTEL*PSARRFSLTMSSQA
Trigger: TGCCTGGCTAGACATGGTCAACGAGAAGCGCCGAGCAGACGGCCACAGCTCGGTGTCGGCAGACACCTTCGAGCTGCTGGTGGACCGGCT
64% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000004985.11
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR CAA 90 bp GGCCTGCCATTAGAAAGAAGCTGCCGGCCATACACGTGGCAGGGGCAGCAGAGGTTCTTGGACACGCCCTaGAGGGGGCTGCCCACCCCA +
Preference number: 5 (lower is better)
Translates to: GLPLERSCRPYTWQGQQRFLDTP*RGLPTP
Trigger: TGGGGTGGGCAGCCCCCTCAAGGGCGTGTCCAAGAA...CCTCTGCTGCCCCTGCCACGTGTATGGCCGGCAGCTTCTTTCTAATGGCAGGCC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 7 transcripts:
ENSMUST00000004985.11
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR CAA 90 bp CTGCCATTAGAAAGAAGCTGCCGGCCATACACGTGGCAGGGGCAGCAGAGGTTCGGGATGGGGACACCGTaGTGCAGGAGGCCCTCCCGG +
Preference number: 5 (lower is better)
Translates to: LPLERSCRPYTWQGQQRFGMGTP*CRRPSR
Trigger: CCGGGAGGGCCTCCTGCACAACGGTGTCCCCATCCC...GAACCTCTGCTGCCCCTGCCACGTGTATGGCCGGCAGCTTCTTTCTAATGGCAG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000004985.11
ENSMUST00000140587.9
ENSMUST00000156029.8
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
CDS-3UTR CAA 90 bp GCAAAGAAGGCAGACACAGGCCCAGCTCGGCTCTCACAGGTAGCTGGAAGTGACGGGATGGGGACACCGTaGTGCAGGAGGCCCTCCCGG +
Preference number: 5 (lower is better)
Translates to: AKKADTGPARLSQVAGSDGMGTP*CRRPSR
Trigger: CCGGGAGGGCCTCCTGCACAACGGTGTCCCCATCCC...GTCACTTCCAGCTACCTGTGAGAGCCGAGCTGGGCCTGTGTCTGCCTTCTTTGC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000156029.8
ENSMUST00000233701.2
CDS GCA 90 bp TCCTGCTCCCGCTGCTCAGCATTTCTCTGGGACTGTAAGTGGGAGTaGAGGCGCCTGATGAGGGGGACACCGTTCCGAGCCTGCCGCTTC +
Preference number: 5 (lower is better)
Translates to: SCSRCSAFLWDCKWE*RRLMRGTPFRACRF
Trigger: GAAGCGGCAGGCTCGGAACGGTGTCCCCCTCATCAGGCGCCTGCACTCCCACTTACAGTCCCAGAGAAATGCTGAGCAGCGGGAGCAGGA
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 8 transcripts:
ENSMUST00000004985.11
ENSMUST00000156029.8
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS CCA 90 bp GGCTGGCTCCCCGTATCCACCACACGAAAGCTGGGCTGGGGGAGGTaGAAGGAGGTACCGGACGCATGCTTGGAACAGGACTCCTTCCTC +
Preference number: 5 (lower is better)
Translates to: GWLPVSTTRKLGWGR*KEVPDACLEQDSFL
Trigger: GAGGAAGGAGTCCTGTTCCAAGCATGCGTCCGGTACCTCCTTCCACCTCCCCCAGCCCAGCTTTCGTGTGGTGGATACGGGGAGCCAGCC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 7 transcripts:
ENSMUST00000004985.11
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS CCA 90 bp AGAGTCTCCATTCACACCTTCCAGGAAGGGCACACGAGACAGGGCTaGCTTCCCACGGCTGCGTTTGGGAGGCGTCAGGCCACTGCCAGC +
Preference number: 5 (lower is better)
Translates to: RVSIHTFQEGHTRQG*LPTAAFGRRQATAS
Trigger: GCTGGCAGTGGCCTGACGCCTCCCAAACGCAGCCGTGGGAAGCCAGCCCTGTCTCGTGTGCCCTTCCTGGAAGGTGTGAATGGAGACTCT
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000004985.11
ENSMUST00000156029.8
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR CAA 90 bp GGGGGAAGGGAAGCTCTGAGGGTTCCCGAGGGACCCTGGCACATCTCTGGGATCCCCTCCCGGGGCATCTaGGGATCGATGATCAAGGCA +
Preference number: 5 (lower is better)
Translates to: GGREALRVPEGPWHISGIPSRGI*GSMIKA
Trigger: TGCCTTGATCATCGATCCCAAGATGCCCCGGGAGGG...GATCCCAGAGATGTGCCAGGGTCCCTCGGGAACCCTCAGAGCTTCCCTTCCCCC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 5 transcripts:
ENSMUST00000004985.11
ENSMUST00000156029.8
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
CDS-3UTR CAA 90 bp GGGCGGTGTGGGGGAAGGGAAGCTCTGAGGGTTCCCGAGGGACCCTGGCACATCCGGCCTTCTAGCATCTaGAGCTTGTCCACAGTGTCC +
Preference number: 5 (lower is better)
Translates to: GRCGGREALRVPEGPWHIRPSSI*SLSTVS
Trigger: GGACACTGTGGACAAGCTCAAGATGCTAGAAGGCCG...GATGTGCCAGGGTCCCTCGGGAACCCTCAGAGCTTCCCTTCCCCCACACCGCCC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000004985.11
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
CDS GCA 90 bp GTAGGATTCCTTCTCAAGCCGGTCCACCAGCAGCTCGAAGGTGTCTaGCGACACCGAGCTGTGGCCGTCTGCTCGGCGCTTCTCGTTGAC +
Preference number: 5 (lower is better)
Translates to: VGFLLKPVHQQLEGV*RHRAVAVCSALLVD
Trigger: GTCAACGAGAAGCGCCGAGCAGACGGCCACAGCTCGGTGTCGGCAGACACCTTCGAGCTGCTGGTGGACCGGCTTGAGAAGGAATCCTAC
62% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000004985.11
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR CAA 90 bp AGAAAGAAGCTGCCGGCCATACACGTGGCAGGGGCAGCAGAGGTTCTCATGCCTTTCTTGGACACGCCCTaGAGGGGGCTGCCCACCCCA +
Preference number: 5 (lower is better)
Translates to: RKKLPAIHVAGAAEVLMPFLDTP*RGLPTP
Trigger: TGGGGTGGGCAGCCCCCTCAAGGGCGTGTCCAAGAA...AGGCATGAGAACCTCTGCTGCCCCTGCCACGTGTATGGCCGGCAGCTTCTTTCT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 7 transcripts:
ENSMUST00000004985.11
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR CAA 90 bp CAGTCCAGTCAGGGCCTGCCATTAGAAAGAAGCTGCCGGCCATACACGTGGCAGTTCCCACGGCTGCGTTaGGGAGGCGTCAGGCCACTG +
Preference number: 5 (lower is better)
Translates to: QSSQGLPLERSCRPYTWQFPRLR*GGVRPL
Trigger: CAGTGGCCTGACGCCTCCCAAACGCAGCCGTGGGAA...CTGCCACGTGTATGGCCGGCAGCTTCTTTCTAATGGCAGGCCCTGACTGGACTG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000004985.11
ENSMUST00000156029.8
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS GCA 90 bp CGCAACAGAAGGCGTCTTCGTCGATTAGGGACTGCTGGGCCCCACTaGTGCGGCTCTCCAGGTAGGATTCCTTCTCAAGCCGGTCCACCA +
Preference number: 5 (lower is better)
Translates to: RNRRRLRRLGTAGPH*CGSPGRIPSQAGPP
Trigger: TGGTGGACCGGCTTGAGAAGGAATCCTACCTGGAGAGCCGCAGCAGTGGGGCCCAGCAGTCCCTAATCGACGAAGACGCCTTCTGTTGCG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000004985.11
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS CCA 90 bp ACCCTCTTTCGGCCCATCCTCATCCCCGACTTCACTGAGGCTCCTTaGGGAGTCGCCCTTTCTCCTGGCAACGGCCACACTTGGAGAGTG +
Preference number: 5 (lower is better)
Translates to: TLFRPILIPDFTEAP*GVALSPGNGHTWRV
Trigger: CACTCTCCAAGTGTGGCCGTTGCCAGGAGAAAGGGCGACTCCCCAAGGAGCCTCAGTGAAGTCGGGGATGAGGATGGGCCGAAAGAGGGT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000004985.11
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR CAA 90 bp AGTCAGGGCCTGCCATTAGAAAGAAGCTGCCGGCCATACACGTGGCAGGGGCAGCGGGCGGGTGGAATGTaGTCGATGCCCTCAATAGGC +
Preference number: 5 (lower is better)
Translates to: SQGLPLERSCRPYTWQGQRAGGM*SMPSIG
Trigger: GCCTATTGAGGGCATCGACAACATTCCACCCGCCCG...CTGCCCCTGCCACGTGTATGGCCGGCAGCTTCTTTCTAATGGCAGGCCCTGACT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000004985.11
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR CAA 90 bp GAAAGAAGCTGCCGGCCATACACGTGGCAGGGGCAGCAGAGGTTCTCATGCCTCCGGGCGGGTGGAATGTaGTCGATGCCCTCAATAGGC +
Preference number: 5 (lower is better)
Translates to: ERSCRPYTWQGQQRFSCLRAGGM*SMPSIG
Trigger: GCCTATTGAGGGCATCGACAACATTCCACCCGCCCG...GAGGCATGAGAACCTCTGCTGCCCCTGCCACGTGTATGGCCGGCAGCTTCTTTC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000004985.11
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR CAA 90 bp TGGTCAATATTGGGTCTTGCCCTCGGAGACCCAGTCCAGTCAGGGCCTGCCATTTTCTTGGACACGCCCTaGAGGGGGCTGCCCACCCCA +
Preference number: 5 (lower is better)
Translates to: WSILGLALGDPVQSGPAIFLDTP*RGLPTP
Trigger: TGGGGTGGGCAGCCCCCTCAAGGGCGTGTCCAAGAA...AATGGCAGGCCCTGACTGGACTGGGTCTCCGAGGGCAAGACCCAATATTGACCA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 7 transcripts:
ENSMUST00000004985.11
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR CAA 90 bp GAAAGAAGCTGCCGGCCATACACGTGGCAGGGGCAGCAGAGGTTCTCATGCCTCGCTGGCAGCTCCCCGTaGGGCACAGTCTTGTTCAGT +
Preference number: 5 (lower is better)
Translates to: ERSCRPYTWQGQQRFSCLAGSSP*GTVLFS
Trigger: ACTGAACAAGACTGTGCCCAACGGGGAGCTGCCAGC...GAGGCATGAGAACCTCTGCTGCCCCTGCCACGTGTATGGCCGGCAGCTTCTTTC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000004985.11
ENSMUST00000156029.8
ENSMUST00000233701.2
CDS-3UTR CAA 90 bp AGTCAGGGCCTGCCATTAGAAAGAAGCTGCCGGCCATACACGTGGCAGGGGCAGCCCTCCCGGGGCATCTaGGGATCGATGATCAAGGCA +
Preference number: 5 (lower is better)
Translates to: SQGLPLERSCRPYTWQGQPSRGI*GSMIKA
Trigger: TGCCTTGATCATCGATCCCAAGATGCCCCGGGAGGG...CTGCCCCTGCCACGTGTATGGCCGGCAGCTTCTTTCTAATGGCAGGCCCTGACT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000004985.11
ENSMUST00000140587.9
ENSMUST00000156029.8
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
CDS-3UTR CAA 90 bp GGCTGTGCTGTTTGCTGGACAGAACCTGGCCCTCTTGGTGAGTTTTGTTGGTTCGGGATGGGGACACCGTaGTGCAGGAGGCCCTCCCGG +
Preference number: 5 (lower is better)
Translates to: GCAVCWTEPGPLGEFCWFGMGTP*CRRPSR
Trigger: CCGGGAGGGCCTCCTGCACAACGGTGTCCCCATCCC...GAACCAACAAAACTCACCAAGAGGGCCAGGTTCTGTCCAGCAAACAGCACAGCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000004985.11
ENSMUST00000156029.8
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
CDS-3UTR CAA 90 bp GAAGCTGCCGGCCATACACGTGGCAGGGGCAGCAGAGGTTCTCATGCCTCAGGGCGGCCTTCTAGCATCTaGAGCTTGTCCACAGTGTCC +
Preference number: 5 (lower is better)
Translates to: EAAGHTRGRGSRGSHASGRPSSI*SLSTVS
Trigger: GGACACTGTGGACAAGCTCAAGATGCTAGAAGGCCG...CCCTGAGGCATGAGAACCTCTGCTGCCCCTGCCACGTGTATGGCCGGCAGCTTC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000004985.11
ENSMUST00000140587.9
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
CDS-3UTR CAA 90 bp GAAGCTGCCGGCCATACACGTGGCAGGGGCAGCAGAGGTTCTCATGCCTCAGGGTTCCGGATGCTGGTCTaGCGGCCTTCTAGCATCTTG +
Preference number: 5 (lower is better)
Translates to: EAAGHTRGRGSRGSHASGFRMLV*RPSSIL
Trigger: CAAGATGCTAGAAGGCCGCAAGACCAGCATCCGGAA...CCCTGAGGCATGAGAACCTCTGCTGCCCCTGCCACGTGTATGGCCGGCAGCTTC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000004985.11
ENSMUST00000140587.9
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
CDS TCA 90 bp AACAATCCTCTGGGCTTGGGCGTAAGTCAGGGTCTCCCGTGTGGGTaGGCACTTAAGACTGTATGGGGATGGGGATCTCCGGCCCTCGGC +
Preference number: 5 (lower is better)
Translates to: NNPLGLGVSQGLPCG*ALKTVWGWGSPALG
Trigger: GCCGAGGGCCGGAGATCCCCATCCCCATACAGTCTTAAGTGCTCACCCACACGGGAGACCCTGACTTACGCCCAAGCCCAGAGGATTGTT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000004985.11
ENSMUST00000136233.2
ENSMUST00000232705.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS TCA 90 bp TGTCTGCCGACACCGAGCTGTGGCCGTCTGCTCGGCGCTTCTCGTTaGCCATGTCTAGCCAGGCAATGTCCTCCTCGTCCATGTCGTACT +
Preference number: 5 (lower is better)
Translates to: CLPTPSCGRLLGASR*PCLARQCPPRPCRT
Trigger: AGTACGACATGGACGAGGAGGACATTGCCTGGCTAGACATGGTCAACGAGAAGCGCCGAGCAGACGGCCACAGCTCGGTGTCGGCAGACA
60% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000004985.11
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR CAA 90 bp TGCCGCGGTGATCATGCTGATGCAGTGAGGCTTATGGCTGCTGCAGGAGGGGAGGAGGGTTTCTTGGACTaGGCAGGGAATTGGGGCTGC +
Preference number: 5 (lower is better)
Translates to: CRGDHADAVRLMAAAGGEEGFLD*AGNWGC
Trigger: GCAGCCCCAATTCCCTGCCAAGTCCAAGAAACCCTC...CTCCCCTCCTGCAGCAGCCATAAGCCTCACTGCATCAGCATGATCACCGCGGCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000004985.11
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233709.2
CDS-3UTR CAA 90 bp TCAGGGCCTGCCATTAGAAAGAAGCTGCCGGCCATACACGTGGCAGGGGCAGCAGAGGGTTTCTTGGACTaGGCAGGGAATTGGGGCTGC +
Preference number: 5 (lower is better)
Translates to: SGPAIRKKLPAIHVAGAAEGFLD*AGNWGC
Trigger: GCAGCCCCAATTCCCTGCCAAGTCCAAGAAACCCTC...TGCTGCCCCTGCCACGTGTATGGCCGGCAGCTTCTTTCTAATGGCAGGCCCTGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000004985.11
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR CAA 90 bp CTGACCAGCTACCTGGGGATAGGGGGACGTGTCGGCTCCTTGATTAGGCTGTGCGAGGGTTTCTTGGACTaGGCAGGGAATTGGGGCTGC +
Preference number: 5 (lower is better)
Translates to: LTSYLGIGGRVGSLIRLCEGFLD*AGNWGC
Trigger: GCAGCCCCAATTCCCTGCCAAGTCCAAGAAACCCTC...GCACAGCCTAATCAAGGAGCCGACACGTCCCCCTATCCCCAGGTAGCTGGTCAG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 5 transcripts:
ENSMUST00000004985.11
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233709.2
CDS-3UTR CAA 90 bp GCCACCCGCCGCCCGTGCCGCGGTGATCATGCTGATGCAGTGAGGCTTATGGCTCCTTCCTCTTGCCCTTaGATGAGGGTTTCTTGGACT +
Preference number: 5 (lower is better)
Translates to: ATRRPCRGDHADAVRLMAPSSCP*MRVSWT
Trigger: AGTCCAAGAAACCCTCATCAAAGGGCAAGAGGAAGG...AGCCATAAGCCTCACTGCATCAGCATGATCACCGCGGCACGGGCGGCGGGTGGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000004985.11
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233709.2
CDS-3UTR CAA 90 bp CTGCCATTAGAAAGAAGCTGCCGGCCATACACGTGGCAGGGGCAGCAGAGGTTCCGGGCGGGTGGAATGTaGTCGATGCCCTCAATAGGC +
Preference number: 5 (lower is better)
Translates to: LPLERSCRPYTWQGQQRFRAGGM*SMPSIG
Trigger: GCCTATTGAGGGCATCGACAACATTCCACCCGCCCG...GAACCTCTGCTGCCCCTGCCACGTGTATGGCCGGCAGCTTCTTTCTAATGGCAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000004985.11
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR CAA 90 bp AAGGTAGAAGTCAACATGGCAATTGGCGGTCTGCAAACCCGCCTGCGGCTTTGGTTCTTGGACACGCCCTaGAGGGGGCTGCCCACCCCA +
Preference number: 5 (lower is better)
Translates to: KVEVNMAIGGLQTRLRLWFLDTP*RGLPTP
Trigger: TGGGGTGGGCAGCCCCCTCAAGGGCGTGTCCAAGAA...CCAAAGCCGCAGGCGGGTTTGCAGACCGCCAATTGCCATGTTGACTTCTACCTT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000004985.11
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233709.2
CDS-3UTR CAA 90 bp CCAGGGGAACCACATGATTGGTCAATATTGGGTCTTGCCCTCGGAGACCCAGTCTTCTTGGACACGCCCTaGAGGGGGCTGCCCACCCCA +
Preference number: 5 (lower is better)
Translates to: PGEPHDWSILGLALGDPVFLDTP*RGLPTP
Trigger: TGGGGTGGGCAGCCCCCTCAAGGGCGTGTCCAAGAA...GACTGGGTCTCCGAGGGCAAGACCCAATATTGACCAATCATGTGGTTCCCCTGG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 7 transcripts:
ENSMUST00000004985.11
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR CAA 90 bp CAGTCCAGTCAGGGCCTGCCATTAGAAAGAAGCTGCCGGCCATACACGTGGCAGGCTGGCAGCTCCCCGTaGGGCACAGTCTTGTTCAGT +
Preference number: 5 (lower is better)
Translates to: QSSQGLPLERSCRPYTWQAGSSP*GTVLFS
Trigger: ACTGAACAAGACTGTGCCCAACGGGGAGCTGCCAGC...CTGCCACGTGTATGGCCGGCAGCTTCTTTCTAATGGCAGGCCCTGACTGGACTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000004985.11
ENSMUST00000156029.8
ENSMUST00000233701.2
CDS-3UTR CAA 90 bp AAAGAAGCTGCCGGCCATACACGTGGCAGGGGCAGCAGAGGTTCTCATGCCTCACCCTCCCGGGGCATCTaGGGATCGATGATCAAGGCA +
Preference number: 5 (lower is better)
Translates to: KEAAGHTRGRGSRGSHASPSRGI*GSMIKA
Trigger: TGCCTTGATCATCGATCCCAAGATGCCCCGGGAGGG...TGAGGCATGAGAACCTCTGCTGCCCCTGCCACGTGTATGGCCGGCAGCTTCTTT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000004985.11
ENSMUST00000140587.9
ENSMUST00000156029.8
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
CDS-3UTR CAA 90 bp TCACAGAGTCCACAGCTGACCAGCTACCTGGGGATAGGGGGACGTGTCGGCTCCTTCCGGATGCTGGTCTaGCGGCCTTCTAGCATCTTG +
Preference number: 5 (lower is better)
Translates to: SQSPQLTSYLGIGGRVGSFRMLV*RPSSIL
Trigger: CAAGATGCTAGAAGGCCGCAAGACCAGCATCCGGAA...GGAGCCGACACGTCCCCCTATCCCCAGGTAGCTGGTCAGCTGTGGACTCTGTGA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000004985.11
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
CDS CCA 90 bp CTTGGGGAGTCGCCCTTTCTCCTGGCAACGGCCACACTTGGAGAGTaGGCCTCACAATACGCAGTCTTGCGAACAGTAAAGGTGGTGCCG +
Preference number: 5 (lower is better)
Translates to: LGESPFLLATATLGE*ASQYAVLRTVKVVP
Trigger: CGGCACCACCTTTACTGTTCGCAAGACTGCGTATTGTGAGGCCCACTCTCCAAGTGTGGCCGTTGCCAGGAGAAAGGGCGACTCCCCAAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000004985.11
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR CAA 90 bp CAGTCCAGTCAGGGCCTGCCATTAGAAAGAAGCTGCCGGCCATACACGTGGCAGGAGGGTTTCTTGGACTaGGCAGGGAATTGGGGCTGC +
Preference number: 5 (lower is better)
Translates to: QSSQGLPLERSCRPYTWQEGFLD*AGNWGC
Trigger: GCAGCCCCAATTCCCTGCCAAGTCCAAGAAACCCTC...CTGCCACGTGTATGGCCGGCAGCTTCTTTCTAATGGCAGGCCCTGACTGGACTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000004985.11
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR CAA 90 bp CCTGCCATTAGAAAGAAGCTGCCGGCCATACACGTGGCAGGGGCAGCAGAGGTTGAGGGTTTCTTGGACTaGGCAGGGAATTGGGGCTGC +
Preference number: 5 (lower is better)
Translates to: PAIRKKLPAIHVAGAAEVEGFLD*AGNWGC
Trigger: GCAGCCCCAATTCCCTGCCAAGTCCAAGAAACCCTC...AACCTCTGCTGCCCCTGCCACGTGTATGGCCGGCAGCTTCTTTCTAATGGCAGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000004985.11
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR CAA 90 bp GATTGGTCAATATTGGGTCTTGCCCTCGGAGACCCAGTCCAGTCAGGGCCTGCCGTACCGGACGCATGCTaGGAACAGGACTCCTTCCTC +
Preference number: 5 (lower is better)
Translates to: DWSILGLALGDPVQSGPAVPDAC*EQDSFL
Trigger: GAGGAAGGAGTCCTGTTCCAAGCATGCGTCCGGTAC...GGCAGGCCCTGACTGGACTGGGTCTCCGAGGGCAAGACCCAATATTGACCAATC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000004985.11
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR CAA 90 bp GGGGGAAGGGAAGCTCTGAGGGTTCCCGAGGGACCCTGGCACATCTCTGGGATCCCATCACTGGTCTGTTaGAAGGCCCCACCTTTATTG +
Preference number: 5 (lower is better)
Translates to: GGREALRVPEGPWHISGIPSLVC*KAPPLL
Trigger: CAATAAAGGTGGGGCCTTCAAACAGACCAGTGATGG...GATCCCAGAGATGTGCCAGGGTCCCTCGGGAACCCTCAGAGCTTCCCTTCCCCC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 7 transcripts:
ENSMUST00000004985.11
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR CAA 90 bp GGCCTGCCATTAGAAAGAAGCTGCCGGCCATACACGTGGCAGGGGCAGCAGAGGTTGAGCTTCTCCCTTTaGCGGATGAGCTCGATCAGC +
Preference number: 5 (lower is better)
Translates to: GLPLERSCRPYTWQGQQRLSFSL*RMSSIS
Trigger: GCTGATCGAGCTCATCCGCAAAAGGGAGAAGCTCAA...CCTCTGCTGCCCCTGCCACGTGTATGGCCGGCAGCTTCTTTCTAATGGCAGGCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000004985.11
ENSMUST00000156029.8
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR CAA 90 bp CCATTAGAAAGAAGCTGCCGGCCATACACGTGGCAGGGGCAGCAGAGGTTCTCATACAGCTCCGGCTCCTaGGCCGCTTCCGGGAATAGT +
Preference number: 5 (lower is better)
Translates to: PLERSCRPYTWQGQQRFSYSSGS*AASGNS
Trigger: ACTATTCCCGGAAGCGGCCAAGGAGCCGGAGCTGTA...TGAGAACCTCTGCTGCCCCTGCCACGTGTATGGCCGGCAGCTTCTTTCTAATGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000004985.11
ENSMUST00000156029.8
ENSMUST00000233701.2
CDS-3UTR CAA 90 bp TTGGGTCTTGCCCTCGGAGACCCAGTCCAGTCAGGGCCTGCCATTAGAAAGAAGTACAGCTCCGGCTCCTaGGCCGCTTCCGGGAATAGT +
Preference number: 5 (lower is better)
Translates to: LGLALGDPVQSGPAIRKKYSSGS*AASGNS
Trigger: ACTATTCCCGGAAGCGGCCAAGGAGCCGGAGCTGTA...CTTCTTTCTAATGGCAGGCCCTGACTGGACTGGGTCTCCGAGGGCAAGACCCAA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000004985.11
ENSMUST00000156029.8
ENSMUST00000233701.2
CDS-3UTR CAA 90 bp TTGGGTCTTGCCCTCGGAGACCCAGTCCAGTCAGGGCCTGCCATTAGAAAGAAGCCCTCCCGGGGCATCTaGGGATCGATGATCAAGGCA +
Preference number: 5 (lower is better)
Translates to: LGLALGDPVQSGPAIRKKPSRGI*GSMIKA
Trigger: TGCCTTGATCATCGATCCCAAGATGCCCCGGGAGGG...CTTCTTTCTAATGGCAGGCCCTGACTGGACTGGGTCTCCGAGGGCAAGACCCAA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000004985.11
ENSMUST00000140587.9
ENSMUST00000156029.8
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
CDS-3UTR CAA 90 bp TGCCACAGCAGATCCGAGCCGCATCCTGTCCTAAAAGAGCAGTTTTTAAAGTGGGGGATGGGGACACCGTaGTGCAGGAGGCCCTCCCGG +
Preference number: 5 (lower is better)
Translates to: CHSRSEPHPVLKEQFLKWGMGTP*CRRPSR
Trigger: CCGGGAGGGCCTCCTGCACAACGGTGTCCCCATCCC...CCACTTTAAAAACTGCTCTTTTAGGACAGGATGCGGCTCGGATCTGCTGTGGCA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 5 transcripts:
ENSMUST00000004985.11
ENSMUST00000156029.8
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
CDS-3UTR CAA 90 bp ACGTGGCAGGGGCAGCAGAGGTTCTCATGCCTCAGGGACAGAGGAGAGGCAAAGCGGCCTTCTAGCATCTaGAGCTTGTCCACAGTGTCC +
Preference number: 5 (lower is better)
Translates to: TWQGQQRFSCLRDRGEAKRPSSI*SLSTVS
Trigger: GGACACTGTGGACAAGCTCAAGATGCTAGAAGGCCG...CTTTGCCTCTCCTCTGTCCCTGAGGCATGAGAACCTCTGCTGCCCCTGCCACGT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000004985.11
ENSMUST00000140587.9
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
CDS-3UTR CAA 90 bp GAAAGAAGCTGCCGGCCATACACGTGGCAGGGGCAGCAGAGGTTCTCATGCCTCTTCCGGATGCTGGTCTaGCGGCCTTCTAGCATCTTG +
Preference number: 5 (lower is better)
Translates to: ERSCRPYTWQGQQRFSCLFRMLV*RPSSIL
Trigger: CAAGATGCTAGAAGGCCGCAAGACCAGCATCCGGAA...GAGGCATGAGAACCTCTGCTGCCCCTGCCACGTGTATGGCCGGCAGCTTCTTTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000004985.11
ENSMUST00000140587.9
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
CDS TCA 90 bp TGGGAGGCGTCAGGCCACTGCCAGCTTCAAACGCCAGTCCTCCACTaGGACCCAAACTACATTCCGAGTCAGACCCGCTTTCCGTGTGTT +
Preference number: 5 (lower is better)
Translates to: WEASGHCQLQTPVLH*DPNYIPSQTRFPCV
Trigger: AACACACGGAAAGCGGGTCTGACTCGGAATGTAGTTTGGGTCTCAGTGGAGGACTGGCGTTTGAAGCTGGCAGTGGCCTGACGCCTCCCA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000004985.11
ENSMUST00000156029.8
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS GCA 90 bp ACACGAAAGCTGGGCTGGGGGAGGTGGAAGGAGGTACCGGACGCATaGTTGGAACAGGACTCCTTCCTCTTGCCCTTTGATGAGGGTTTC +
Preference number: 5 (lower is better)
Translates to: TRKLGWGRWKEVPDA*LEQDSFLLPFDEGF
Trigger: GAAACCCTCATCAAAGGGCAAGAGGAAGGAGTCCTGTTCCAAGCATGCGTCCGGTACCTCCTTCCACCTCCCCCAGCCCAGCTTTCGTGT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 7 transcripts:
ENSMUST00000004985.11
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS GCA 90 bp TTGAGCTCCTCCTTCACTGCACTAGTCTTCTCGTCCTGCTCCCGCTaGTCAGCATTTCTCTGGGACTGTAAGTGGGAGTGCAGGCGCCTG +
Preference number: 5 (lower is better)
Translates to: LSSSFTALVFSSCSR*SAFLWDCKWECRRL
Trigger: CAGGCGCCTGCACTCCCACTTACAGTCCCAGAGAAATGCTGAGCAGCGGGAGCAGGACGAGAAGACTAGTGCAGTGAAGGAGGAGCTCAA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000004985.11
ENSMUST00000156029.8
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS CCA 90 bp GAAAGCTGGGCTGGGGGAGGTGGAAGGAGGTACCGGACGCATGCTTaGAACAGGACTCCTTCCTCTTGCCCTTTGATGAGGGTTTCTTGG +
Preference number: 5 (lower is better)
Translates to: ESWAGGGGRRYRTHA*NRTPSSCPLMRVSW
Trigger: CCAAGAAACCCTCATCAAAGGGCAAGAGGAAGGAGTCCTGTTCCAAGCATGCGTCCGGTACCTCCTTCCACCTCCCCCAGCCCAGCTTTC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 7 transcripts:
ENSMUST00000004985.11
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS CCA 90 bp GTCTTCCGGAGGCTTCTCAATGTATCGGTAGTAAGCAGCAGGCAATaGGGGCGCTTCTGGCTGGCTCCCCGTATCCACCACACGAAAGCT +
Preference number: 5 (lower is better)
Translates to: VFRRLLNVSVVSSRQ*GRFWLAPRIHHTKA
Trigger: AGCTTTCGTGTGGTGGATACGGGGAGCCAGCCAGAAGCGCCCCCATTGCCTGCTGCTTACTACCGATACATTGAGAAGCCTCCGGAAGAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000004985.11
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR CAA 90 bp CGAGGGACCCTGGCACATCTCTGGGATCAATGTCAGAACCTTGCCTGCCCTGAGAACAATCCTCTGGGCTaGGGCGTAAGTCAGGGTCTC +
Preference number: 5 (lower is better)
Translates to: RGTLAHLWDQCQNLACPENNPLG*GVSQGL
Trigger: GAGACCCTGACTTACGCCCAAGCCCAGAGGATTGTT...CTCAGGGCAGGCAAGGTTCTGACATTGATCCCAGAGATGTGCCAGGGTCCCTCG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000004985.11
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR CAA 90 bp GCAAAGAAGGCAGACACAGGCCCAGCTCGGCTCTCACAGGTAGCTGGAAGTGACAACAATCCTCTGGGCTaGGGCGTAAGTCAGGGTCTC +
Preference number: 5 (lower is better)
Translates to: AKKADTGPARLSQVAGSDNNPLG*GVSQGL
Trigger: GAGACCCTGACTTACGCCCAAGCCCAGAGGATTGTT...GTCACTTCCAGCTACCTGTGAGAGCCGAGCTGGGCCTGTGTCTGCCTTCTTTGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR CAA 90 bp TCGGAGACCCAGTCCAGTCAGGGCCTGCCATTAGAAAGAAGCTGCCGGCCATACGGACTTGGCAGGGAATaGGGGCTGCTCACTGTTTTC +
Preference number: 5 (lower is better)
Translates to: SETQSSQGLPLERSCRPYGLGRE*GLLTVF
Trigger: GAAAACAGTGAGCAGCCCCAATTCCCTGCCAAGTCC...GTATGGCCGGCAGCTTCTTTCTAATGGCAGGCCCTGACTGGACTGGGTCTCCGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000004985.11
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR CAA 90 bp GAAGCTGCCGGCCATACACGTGGCAGGGGCAGCAGAGGTTCTCATGCCTCAGGGTTTGATGAGGGTTTCTaGGACTTGGCAGGGAATTGG +
Preference number: 5 (lower is better)
Translates to: EAAGHTRGRGSRGSHASGFDEGF*DLAGNW
Trigger: CCAATTCCCTGCCAAGTCCAAGAAACCCTCATCAAA...CCCTGAGGCATGAGAACCTCTGCTGCCCCTGCCACGTGTATGGCCGGCAGCTTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000004985.11
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR CAA 90 bp GGGACCCTGGCACATCTCTGGGATCAATGTCAGAACCTTGCCTGCCCTGAGGTAGTACCGGACGCATGCTaGGAACAGGACTCCTTCCTC +
Preference number: 5 (lower is better)
Translates to: GTLAHLWDQCQNLACPEVVPDAC*EQDSFL
Trigger: GAGGAAGGAGTCCTGTTCCAAGCATGCGTCCGGTAC...TACCTCAGGGCAGGCAAGGTTCTGACATTGATCCCAGAGATGTGCCAGGGTCCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000004985.11
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR CAA 90 bp CAGAGGAGAGGCAAAGAAGGCAGACACAGGCCCAGCTCGGCTCTCACAGGTAGCTGGTGCACAGCTAAGTaGCAGATGTCGCAGAACAGG +
Preference number: 5 (lower is better)
Translates to: QRRGKEGRHRPSSALTGSWCTAK*QMSQNR
Trigger: CCTGTTCTGCGACATCTGCAACTTAGCTGTGCACCA...GCTACCTGTGAGAGCCGAGCTGGGCCTGTGTCTGCCTTCTTTGCCTCTCCTCTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR CAA 90 bp AGGATCGTCCTCTGGGCCATGGTCCTCGCCATTCTCAAGGGTCCCATCGGGACCCCATCACTGGTCTGTTaGAAGGCCCCACCTTTATTG +
Preference number: 5 (lower is better)
Translates to: RIVLWAMVLAILKGPIGTPSLVC*KAPPLL
Trigger: CAATAAAGGTGGGGCCTTCAAACAGACCAGTGATGG...GGTCCCGATGGGACCCTTGAGAATGGCGAGGACCATGGCCCAGAGGACGATCCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000232705.2
ENSMUST00000232997.2
CDS-3UTR CAA 90 bp CAATATTGGGTCTTGCCCTCGGAGACCCAGTCCAGTCAGGGCCTGCCATTAGAACGGGCGGGTGGAATGTaGTCGATGCCCTCAATAGGC +
Preference number: 5 (lower is better)
Translates to: QYWVLPSETQSSQGLPLERAGGM*SMPSIG
Trigger: GCCTATTGAGGGCATCGACAACATTCCACCCGCCCG...TTCTAATGGCAGGCCCTGACTGGACTGGGTCTCCGAGGGCAAGACCCAATATTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000004985.11
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR CAA 90 bp AGCCCTCCAGGGGAACCACATGATTGGTCAATATTGGGTCTTGCCCTCGGAGACCGGGCGGGTGGAATGTaGTCGATGCCCTCAATAGGC +
Preference number: 5 (lower is better)
Translates to: SPPGEPHDWSILGLALGDRAGGM*SMPSIG
Trigger: GCCTATTGAGGGCATCGACAACATTCCACCCGCCCG...GTCTCCGAGGGCAAGACCCAATATTGACCAATCATGTGGTTCCCCTGGAGGGCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000004985.11
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR CAA 90 bp TCAGGGCCTGCCATTAGAAAGAAGCTGCCGGCCATACACGTGGCAGGGGCAGCATTGAGCTTCTCCCTTTaGCGGATGAGCTCGATCAGC +
Preference number: 5 (lower is better)
Translates to: SGPAIRKKLPAIHVAGAALSFSL*RMSSIS
Trigger: GCTGATCGAGCTCATCCGCAAAAGGGAGAAGCTCAA...TGCTGCCCCTGCCACGTGTATGGCCGGCAGCTTCTTTCTAATGGCAGGCCCTGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000004985.11
ENSMUST00000156029.8
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR CAA 90 bp GGACAGAGGAGAGGCAAAGAAGGCAGACACAGGCCCAGCTCGGCTCTCACAGGTTTGAGCTTCTCCCTTTaGCGGATGAGCTCGATCAGC +
Preference number: 5 (lower is better)
Translates to: GQRRGKEGRHRPSSALTGLSFSL*RMSSIS
Trigger: GCTGATCGAGCTCATCCGCAAAAGGGAGAAGCTCAA...ACCTGTGAGAGCCGAGCTGGGCCTGTGTCTGCCTTCTTTGCCTCTCCTCTGTCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000156029.8
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR CAA 90 bp AAAGAAGCTGCCGGCCATACACGTGGCAGGGGCAGCAGAGGTTCTCATGCCTCATTTTGCCGAAGGGCATaGATCTCCCTGCGCAGCATG +
Preference number: 5 (lower is better)
Translates to: KEAAGHTRGRGSRGSHASFCRRA*ISLRSM
Trigger: CATGCTGCGCAGGGAGATCAATGCCCTTCGGCAAAA...TGAGGCATGAGAACCTCTGCTGCCCCTGCCACGTGTATGGCCGGCAGCTTCTTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000004985.11
ENSMUST00000156029.8
ENSMUST00000233701.2
CDS-3UTR CAA 90 bp GCCACCCGCCGCCCGTGCCGCGGTGATCATGCTGATGCAGTGAGGCTTATGGCTTGCTCACTGTTTTCCTaGTTGCTATTGCATTCGGTA +
Preference number: 5 (lower is better)
Translates to: ATRRPCRGDHADAVRLMACSLFS*LLLHSV
Trigger: TACCGAATGCAATAGCAACAAGGAAAACAGTGAGCA...AGCCATAAGCCTCACTGCATCAGCATGATCACCGCGGCACGGGCGGCGGGTGGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000004985.11
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233709.2
CDS-3UTR CAA 90 bp TGGTCAATATTGGGTCTTGCCCTCGGAGACCCAGTCCAGTCAGGGCCTGCCATTGGACTTGGCAGGGAATaGGGGCTGCTCACTGTTTTC +
Preference number: 5 (lower is better)
Translates to: WSILGLALGDPVQSGPAIGLGRE*GLLTVF
Trigger: GAAAACAGTGAGCAGCCCCAATTCCCTGCCAAGTCC...AATGGCAGGCCCTGACTGGACTGGGTCTCCGAGGGCAAGACCCAATATTGACCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000004985.11
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR CAA 90 bp ATGATTGGTCAATATTGGGTCTTGCCCTCGGAGACCCAGTCCAGTCAGGGCCTGGAGGGTTTCTTGGACTaGGCAGGGAATTGGGGCTGC +
Preference number: 5 (lower is better)
Translates to: MIGQYWVLPSETQSSQGLEGFLD*AGNWGC
Trigger: GCAGCCCCAATTCCCTGCCAAGTCCAAGAAACCCTC...CAGGCCCTGACTGGACTGGGTCTCCGAGGGCAAGACCCAATATTGACCAATCAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000004985.11
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR CAA 90 bp AGTCAGGGCCTGCCATTAGAAAGAAGCTGCCGGCCATACACGTGGCAGGGGCAGCCTTCCTCTTGCCCTTaGATGAGGGTTTCTTGGACT +
Preference number: 5 (lower is better)
Translates to: SQGLPLERSCRPYTWQGQPSSCP*MRVSWT
Trigger: AGTCCAAGAAACCCTCATCAAAGGGCAAGAGGAAGG...CTGCCCCTGCCACGTGTATGGCCGGCAGCTTCTTTCTAATGGCAGGCCCTGACT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000004985.11
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR CAA 90 bp CAAGCGCCTGGCAGACATCCATCTAATGTAGCAGCTGGCCAGGAAGGAAATGGGGTACCGGACGCATGCTaGGAACAGGACTCCTTCCTC +
Preference number: 5 (lower is better)
Translates to: QAPGRHPSNVAAGQEGNGVPDAC*EQDSFL
Trigger: GAGGAAGGAGTCCTGTTCCAAGCATGCGTCCGGTAC...CCCATTTCCTTCCTGGCCAGCTGCTACATTAGATGGATGTCTGCCAGGCGCTTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000004985.11
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR CAA 90 bp AGCAGCCCTCCAGGGGAACCACATGATTGGTCAATATTGGGTCTTGCCCTCGGAGTACCGGACGCATGCTaGGAACAGGACTCCTTCCTC +
Preference number: 5 (lower is better)
Translates to: SSPPGEPHDWSILGLALGVPDAC*EQDSFL
Trigger: GAGGAAGGAGTCCTGTTCCAAGCATGCGTCCGGTAC...TCCGAGGGCAAGACCCAATATTGACCAATCATGTGGTTCCCCTGGAGGGCTGCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000004985.11
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR CAA 90 bp AGCCCTCCAGGGGAACCACATGATTGGTCAATATTGGGTCTTGCCCTCGGAGACGTACCGGACGCATGCTaGGAACAGGACTCCTTCCTC +
Preference number: 5 (lower is better)
Translates to: SPPGEPHDWSILGLALGDVPDAC*EQDSFL
Trigger: GAGGAAGGAGTCCTGTTCCAAGCATGCGTCCGGTAC...GTCTCCGAGGGCAAGACCCAATATTGACCAATCATGTGGTTCCCCTGGAGGGCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000004985.11
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR CAA 90 bp CCCGAGATCCTGCTGGCAGCTCCCCGTTGGGCACAGTCTTGTTCAGTGACAGGAAGGATGACATTGCTATaGTGGCACTCATCGTCCAGG +
Preference number: 5 (lower is better)
Translates to: PEILLAAPRWAQSCSVTGRMTLL*WHSSSR
Trigger: CCTGGACGATGAGTGCCACAATAGCAATGTCATCCT...TCCTGTCACTGAACAAGACTGTGCCCAACGGGGAGCTGCCAGCAGGATCTCGGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000232705.2
ENSMUST00000232997.2
CDS-3UTR CAA 90 bp GATTGGTCAATATTGGGTCTTGCCCTCGGAGACCCAGTCCAGTCAGGGCCTGCCTGGTGCACAGCTAAGTaGCAGATGTCGCAGAACAGG +
Preference number: 5 (lower is better)
Translates to: DWSILGLALGDPVQSGPAWCTAK*QMSQNR
Trigger: CCTGTTCTGCGACATCTGCAACTTAGCTGTGCACCA...GGCAGGCCCTGACTGGACTGGGTCTCCGAGGGCAAGACCCAATATTGACCAATC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000004985.11
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR CAA 90 bp CTTGCCCTCGGAGACCCAGTCCAGTCAGGGCCTGCCATTAGAAAGAAGCTGCCGCCATCACTGGTCTGTTaGAAGGCCCCACCTTTATTG +
Preference number: 5 (lower is better)
Translates to: LALGDPVQSGPAIRKKLPPSLVC*KAPPLL
Trigger: CAATAAAGGTGGGGCCTTCAAACAGACCAGTGATGG...CGGCAGCTTCTTTCTAATGGCAGGCCCTGACTGGACTGGGTCTCCGAGGGCAAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000004985.11
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR CAA 90 bp GGCTGTGCTGTTTGCTGGACAGAACCTGGCCCTCTTGGTGAGTTTTGTTGGTTCCGGGCGGGTGGAATGTaGTCGATGCCCTCAATAGGC +
Preference number: 5 (lower is better)
Translates to: GCAVCWTEPGPLGEFCWFRAGGM*SMPSIG
Trigger: GCCTATTGAGGGCATCGACAACATTCCACCCGCCCG...GAACCAACAAAACTCACCAAGAGGGCCAGGTTCTGTCCAGCAAACAGCACAGCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000004985.11
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233709.2
CDS-3UTR CAA 90 bp CAGTCCAGTCAGGGCCTGCCATTAGAAAGAAGCTGCCGGCCATACACGTGGCAGTTGAGCTTCTCCCTTTaGCGGATGAGCTCGATCAGC +
Preference number: 5 (lower is better)
Translates to: QSSQGLPLERSCRPYTWQLSFSL*RMSSIS
Trigger: GCTGATCGAGCTCATCCGCAAAAGGGAGAAGCTCAA...CTGCCACGTGTATGGCCGGCAGCTTCTTTCTAATGGCAGGCCCTGACTGGACTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000004985.11
ENSMUST00000156029.8
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR CAA 90 bp TGCCGCGGTGATCATGCTGATGCAGTGAGGCTTATGGCTGCTGCAGGAGGGGAGGTGGGGCAGGCAATTTaGAATCATCTCTGTCCCCTT +
Preference number: 5 (lower is better)
Translates to: CRGDHADAVRLMAAAGGEVGQAI*NHLCPL
Trigger: AAGGGGACAGAGATGATTCAAAATTGCCTGCCCCAC...CTCCCCTCCTGCAGCAGCCATAAGCCTCACTGCATCAGCATGATCACCGCGGCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000004985.11
ENSMUST00000156029.8
CDS-3UTR CAA 90 bp CTTGCCCTCGGAGACCCAGTCCAGTCAGGGCCTGCCATTAGAAAGAAGCTGCCGGTGGGGCAGGCAATTTaGAATCATCTCTGTCCCCTT +
Preference number: 5 (lower is better)
Translates to: LALGDPVQSGPAIRKKLPVGQAI*NHLCPL
Trigger: AAGGGGACAGAGATGATTCAAAATTGCCTGCCCCAC...CGGCAGCTTCTTTCTAATGGCAGGCCCTGACTGGACTGGGTCTCCGAGGGCAAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000004985.11
ENSMUST00000156029.8
ENSMUST00000233701.2
CDS-3UTR CAA 90 bp GGAAGGGAAGCTCTGAGGGTTCCCGAGGGACCCTGGCACATCTCTGGGATCAATAACCGGCTTGAAGGTTaGCTGTCGCTGATGGGTTTC +
Preference number: 5 (lower is better)
Translates to: GREALRVPEGPWHISGINNRLEG*LSLMGF
Trigger: GAAACCCATCAGCGACAGCAAACCTTCAAGCCGGTT...ATTGATCCCAGAGATGTGCCAGGGTCCCTCGGGAACCCTCAGAGCTTCCCTTCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000004985.11
ENSMUST00000156029.8
ENSMUST00000233701.2
CDS-3UTR CAA 90 bp GCAAAGAAGGCAGACACAGGCCCAGCTCGGCTCTCACAGGTAGCTGGAAGTGACAACCGGCTTGAAGGTTaGCTGTCGCTGATGGGTTTC +
Preference number: 5 (lower is better)
Translates to: AKKADTGPARLSQVAGSDNRLEG*LSLMGF
Trigger: GAAACCCATCAGCGACAGCAAACCTTCAAGCCGGTT...GTCACTTCCAGCTACCTGTGAGAGCCGAGCTGGGCCTGTGTCTGCCTTCTTTGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000156029.8
ENSMUST00000233701.2
CDS-3UTR CAA 90 bp CCATTAGAAAGAAGCTGCCGGCCATACACGTGGCAGGGGCAGCAGAGGTTCTCACCATTCTTGGCCTTCTaGAAGAGGACGGAGGTTCGG +
Preference number: 5 (lower is better)
Translates to: PLERSCRPYTWQGQQRFSPFLAF*KRTEVR
Trigger: CCGAACCTCCGTCCTCTTCAAGAAGGCCAAGAATGG...TGAGAACCTCTGCTGCCCCTGCCACGTGTATGGCCGGCAGCTTCTTTCTAATGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000004985.11
ENSMUST00000156029.8
ENSMUST00000233701.2
CDS-3UTR CAA 90 bp ATTGGTCAATATTGGGTCTTGCCCTCGGAGACCCAGTCCAGTCAGGGCCTGCCACCATTCTTGGCCTTCTaGAAGAGGACGGAGGTTCGG +
Preference number: 5 (lower is better)
Translates to: IGQYWVLPSETQSSQGLPPFLAF*KRTEVR
Trigger: CCGAACCTCCGTCCTCTTCAAGAAGGCCAAGAATGG...TGGCAGGCCCTGACTGGACTGGGTCTCCGAGGGCAAGACCCAATATTGACCAAT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000004985.11
ENSMUST00000156029.8
ENSMUST00000233701.2
CDS-3UTR CAA 90 bp CAGGGCCTGCCATTAGAAAGAAGCTGCCGGCCATACACGTGGCAGGGGCAGCAGAGCTTAACTCCATTCTaGGCCTTCTTGAAGAGGACG +
Preference number: 5 (lower is better)
Translates to: QGLPLERSCRPYTWQGQQSLTPF*AFLKRT
Trigger: CGTCCTCTTCAAGAAGGCCAAGAATGGAGTTAAGCT...CTGCTGCCCCTGCCACGTGTATGGCCGGCAGCTTCTTTCTAATGGCAGGCCCTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000004985.11
ENSMUST00000156029.8
ENSMUST00000233701.2
CDS-3UTR CAA 90 bp ATCAATTTGGTGATGTTGCTGTCAGTTTGGCACAAGGGAGAGCAGAGAGCAATGGGGATGGGGACACCGTaGTGCAGGAGGCCCTCCCGG +
Preference number: 5 (lower is better)
Translates to: INLVMLLSVWHKGEQRAMGMGTP*CRRPSR
Trigger: CCGGGAGGGCCTCCTGCACAACGGTGTCCCCATCCC...CATTGCTCTCTGCTCTCCCTTGTGCCAAACTGACAGCAACATCACCAAATTGAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000004985.11
ENSMUST00000156029.8
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
CDS CCA 90 bp GGCTTCTGCCATCCTCCCAGGAGAATCGGTAAAAGTCTTCCAATCTaGGTGATTCGGGCAAGTGGGTGCCCCTCTCAGGATCATAGCCGA +
Preference number: 5 (lower is better)
Translates to: GFCHPPRRIGKSLPI*VIRASGCPSQDHSR
Trigger: TCGGCTATGATCCTGAGAGGGGCACCCACTTGCCCGAATCACCCAGATTGGAAGACTTTTACCGATTCTCCTGGGAGGATGGCAGAAGCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000233561.2
CDS-3UTR CAA 90 bp CAATATTGGGTCTTGCCCTCGGAGACCCAGTCCAGTCAGGGCCTGCCATTAGAAAACAATCCTCTGGGCTaGGGCGTAAGTCAGGGTCTC +
Preference number: 5 (lower is better)
Translates to: QYWVLPSETQSSQGLPLENNPLG*GVSQGL
Trigger: GAGACCCTGACTTACGCCCAAGCCCAGAGGATTGTT...TTCTAATGGCAGGCCCTGACTGGACTGGGTCTCCGAGGGCAAGACCCAATATTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000004985.11
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR CAA 90 bp ATGATTGGTCAATATTGGGTCTTGCCCTCGGAGACCCAGTCCAGTCAGGGCCTGAACAATCCTCTGGGCTaGGGCGTAAGTCAGGGTCTC +
Preference number: 5 (lower is better)
Translates to: MIGQYWVLPSETQSSQGLNNPLG*GVSQGL
Trigger: GAGACCCTGACTTACGCCCAAGCCCAGAGGATTGTT...CAGGCCCTGACTGGACTGGGTCTCCGAGGGCAAGACCCAATATTGACCAATCAT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000004985.11
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR CAA 90 bp GAAGCTGCCGGCCATACACGTGGCAGGGGCAGCAGAGGTTCTCATGCCTCAGGGTGCTCACTGTTTTCCTaGTTGCTATTGCATTCGGTA +
Preference number: 5 (lower is better)
Translates to: EAAGHTRGRGSRGSHASGCSLFS*LLLHSV
Trigger: TACCGAATGCAATAGCAACAAGGAAAACAGTGAGCA...CCCTGAGGCATGAGAACCTCTGCTGCCCCTGCCACGTGTATGGCCGGCAGCTTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000004985.11
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR CAA 90 bp TCCCGAGGGACCCTGGCACATCTCTGGGATCAATGTCAGAACCTTGCCTGCCCTCCTTCCTCTTGCCCTTaGATGAGGGTTTCTTGGACT +
Preference number: 5 (lower is better)
Translates to: SRGTLAHLWDQCQNLACPPSSCP*MRVSWT
Trigger: AGTCCAAGAAACCCTCATCAAAGGGCAAGAGGAAGG...AGGGCAGGCAAGGTTCTGACATTGATCCCAGAGATGTGCCAGGGTCCCTCGGGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000004985.11
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR CAA 90 bp GGAAGGGAAGCTCTGAGGGTTCCCGAGGGACCCTGGCACATCTCTGGGATCAATCCATCACTGGTCTGTTaGAAGGCCCCACCTTTATTG +
Preference number: 5 (lower is better)
Translates to: GREALRVPEGPWHISGINPSLVC*KAPPLL
Trigger: CAATAAAGGTGGGGCCTTCAAACAGACCAGTGATGG...ATTGATCCCAGAGATGTGCCAGGGTCCCTCGGGAACCCTCAGAGCTTCCCTTCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000004985.11
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR CAA 90 bp AAAGAAGCTGCCGGCCATACACGTGGCAGGGGCAGCAGAGGTTCTCATGCCTCACCATCACTGGTCTGTTaGAAGGCCCCACCTTTATTG +
Preference number: 5 (lower is better)
Translates to: KEAAGHTRGRGSRGSHASPSLVC*KAPPLL
Trigger: CAATAAAGGTGGGGCCTTCAAACAGACCAGTGATGG...TGAGGCATGAGAACCTCTGCTGCCCCTGCCACGTGTATGGCCGGCAGCTTCTTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000004985.11
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR CAA 90 bp GGTCTTGCCCTCGGAGACCCAGTCCAGTCAGGGCCTGCCATTAGAAAGAAGCTGCCATCACTGGTCTGTTaGAAGGCCCCACCTTTATTG +
Preference number: 5 (lower is better)
Translates to: GLALGDPVQSGPAIRKKLPSLVC*KAPPLL
Trigger: CAATAAAGGTGGGGCCTTCAAACAGACCAGTGATGG...CAGCTTCTTTCTAATGGCAGGCCCTGACTGGACTGGGTCTCCGAGGGCAAGACC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000004985.11
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR CAA 90 bp AAGGAGACAGAAAGGGAGAAGCCCCAAGATCTTGACACAGGTTTAGACAAGGGTTTCTTGGACACGCCCTaGAGGGGGCTGCCCACCCCA +
Preference number: 5 (lower is better)
Translates to: KETEREKPQDLDTGLDKGFLDTP*RGLPTP
Trigger: TGGGGTGGGCAGCCCCCTCAAGGGCGTGTCCAAGAA...ACCCTTGTCTAAACCTGTGTCAAGATCTTGGGGCTTCTCCCTTTCTGTCTCCTT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 5 transcripts:
ENSMUST00000004985.11
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233709.2
CDS-3UTR CAA 90 bp AAGGGAAGCTCTGAGGGTTCCCGAGGGACCCTGGCACATCTCTGGGATCAATGTTTGAGCTTCTCCCTTTaGCGGATGAGCTCGATCAGC +
Preference number: 5 (lower is better)
Translates to: KGSSEGSRGTLAHLWDQCLSFSL*RMSSIS
Trigger: GCTGATCGAGCTCATCCGCAAAAGGGAGAAGCTCAA...ACATTGATCCCAGAGATGTGCCAGGGTCCCTCGGGAACCCTCAGAGCTTCCCTT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000004985.11
ENSMUST00000156029.8
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR CAA 90 bp CTCCAGGGGAACCACATGATTGGTCAATATTGGGTCTTGCCCTCGGAGACCCAGTTTTGCCGAAGGGCATaGATCTCCCTGCGCAGCATG +
Preference number: 5 (lower is better)
Translates to: LQGNHMIGQYWVLPSETQFCRRA*ISLRSM
Trigger: CATGCTGCGCAGGGAGATCAATGCCCTTCGGCAAAA...CTGGGTCTCCGAGGGCAAGACCCAATATTGACCAATCATGTGGTTCCCCTGGAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000004985.11
ENSMUST00000156029.8
ENSMUST00000233701.2
CDS-3UTR CAA 90 bp CCTGGCAGACATCCATCTAATGTAGCAGCTGGCCAGGAAGGAAATGGGACATCAGCTGGCAGCTCCCCGTaGGGCACAGTCTTGTTCAGT +
Preference number: 5 (lower is better)
Translates to: PGRHPSNVAAGQEGNGTSAGSSP*GTVLFS
Trigger: ACTGAACAAGACTGTGCCCAACGGGGAGCTGCCAGC...TGATGTCCCATTTCCTTCCTGGCCAGCTGCTACATTAGATGGATGTCTGCCAGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000004985.11
ENSMUST00000156029.8
ENSMUST00000233701.2
CDS-3UTR CAA 90 bp TGGTCAATATTGGGTCTTGCCCTCGGAGACCCAGTCCAGTCAGGGCCTGCCATTAACCGGCTTGAAGGTTaGCTGTCGCTGATGGGTTTC +
Preference number: 5 (lower is better)
Translates to: WSILGLALGDPVQSGPAINRLEG*LSLMGF
Trigger: GAAACCCATCAGCGACAGCAAACCTTCAAGCCGGTT...AATGGCAGGCCCTGACTGGACTGGGTCTCCGAGGGCAAGACCCAATATTGACCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000004985.11
ENSMUST00000156029.8
ENSMUST00000233701.2
CDS-3UTR CAA 90 bp GTCCAGTCAGGGCCTGCCATTAGAAAGAAGCTGCCGGCCATACACGTGGCAGGGAGCTTAACTCCATTCTaGGCCTTCTTGAAGAGGACG +
Preference number: 5 (lower is better)
Translates to: VQSGPAIRKKLPAIHVAGSLTPF*AFLKRT
Trigger: CGTCCTCTTCAAGAAGGCCAAGAATGGAGTTAAGCT...CCCTGCCACGTGTATGGCCGGCAGCTTCTTTCTAATGGCAGGCCCTGACTGGAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000004985.11
ENSMUST00000156029.8
ENSMUST00000233701.2
CDS-3UTR CAA 90 bp CAATATTGGGTCTTGCCCTCGGAGACCCAGTCCAGTCAGGGCCTGCCATTAGAACGGCCTTCTAGCATCTaGAGCTTGTCCACAGTGTCC +
Preference number: 5 (lower is better)
Translates to: QYWVLPSETQSSQGLPLERPSSI*SLSTVS
Trigger: GGACACTGTGGACAAGCTCAAGATGCTAGAAGGCCG...TTCTAATGGCAGGCCCTGACTGGACTGGGTCTCCGAGGGCAAGACCCAATATTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000004985.11
ENSMUST00000140587.9
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
CDS-3UTR CAA 90 bp CATGATTGGTCAATATTGGGTCTTGCCCTCGGAGACCCAGTCCAGTCAGGGCCTTTCCGGATGCTGGTCTaGCGGCCTTCTAGCATCTTG +
Preference number: 5 (lower is better)
Translates to: HDWSILGLALGDPVQSGPFRMLV*RPSSIL
Trigger: CAAGATGCTAGAAGGCCGCAAGACCAGCATCCGGAA...AGGCCCTGACTGGACTGGGTCTCCGAGGGCAAGACCCAATATTGACCAATCATG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000004985.11
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
CDS TCA 90 bp CACGCCATCCTCCCAGGAGAATCGGTAAAAGTCTTCCAATCTGGGTaGTTCGGGCAAGTGGGTGCCCCTCTCAGGATCATAGCCGATGTT +
Preference number: 5 (lower is better)
Translates to: HAILPGESVKVFQSG*FGQVGAPLRIIADV
Trigger: AACATCGGCTATGATCCTGAGAGGGGCACCCACTTGCCCGAATCACCCAGATTGGAAGACTTTTACCGATTCTCCTGGGAGGATGGCGTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000233646.2
ENSMUST00000233709.2
CDS GCA 90 bp TGCCAGTATTTGAGCTCCTCCTTCACTGCACTAGTCTTCTCGTCCTaGTCCCGCTGCTCAGCATTTCTCTGGGACTGTAAGTGGGAGTGC +
Preference number: 5 (lower is better)
Translates to: CQYLSSSFTALVFSS*SRCSAFLWDCKWEC
Trigger: GCACTCCCACTTACAGTCCCAGAGAAATGCTGAGCAGCGGGAGCAGGACGAGAAGACTAGTGCAGTGAAGGAGGAGCTCAAATACTGGCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000004985.11
ENSMUST00000156029.8
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS GCA 90 bp CTCAGGCTGACAGGTTCAGCAAAGATGTGTGCAGAGTCTTTCTCCTaGAGCAGGTCCAGAGTCGTCCTCAACAGGACCGTAAACGGCATC +
Preference number: 5 (lower is better)
Translates to: LRLTGSAKMCAESFS*SRSRVVLNRTVNGI
Trigger: GATGCCGTTTACGGTCCTGTTGAGGACGACTCTGGACCTGCTGCAGGAGAAAGACTCTGCACACATCTTTGCTGAACCTGTCAGCCTGAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000004985.11
ENSMUST00000156029.8
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR CAA 90 bp GGTAAAAGTCTTCCAATCTGGGTGATTCGGGCAAGTGGGTGCCCCTCTCAGGATGGACTTGGCAGGGAATaGGGGCTGCTCACTGTTTTC +
Preference number: 5 (lower is better)
Translates to: GKSLPIWVIRASGCPSQDGLGRE*GLLTVF
Trigger: GAAAACAGTGAGCAGCCCCAATTCCCTGCCAAGTCC...ATCCTGAGAGGGGCACCCACTTGCCCGAATCACCCAGATTGGAAGACTTTTACC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000232705.2
ENSMUST00000232997.2
CDS-3UTR CAA 90 bp CATCTCTGGGATCAATGTCAGAACCTTGCCTGCCCTGAGGTATGGTTAGGTGGGGGACTTGGCAGGGAATaGGGGCTGCTCACTGTTTTC +
Preference number: 5 (lower is better)
Translates to: HLWDQCQNLACPEVWLGGGLGRE*GLLTVF
Trigger: GAAAACAGTGAGCAGCCCCAATTCCCTGCCAAGTCC...CCCACCTAACCATACCTCAGGGCAGGCAAGGTTCTGACATTGATCCCAGAGATG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 7 transcripts:
ENSMUST00000004985.11
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR CAA 90 bp GTGATGTTGCTGTCAGTTTGGCACAAGGGAGAGCAGAGAGCAATGAGGGAAGGGGGACTTGGCAGGGAATaGGGGCTGCTCACTGTTTTC +
Preference number: 5 (lower is better)
Translates to: VMLLSVWHKGEQRAMREGGLGRE*GLLTVF
Trigger: GAAAACAGTGAGCAGCCCCAATTCCCTGCCAAGTCC...CCCTTCCCTCATTGCTCTCTGCTCTCCCTTGTGCCAAACTGACAGCAACATCAC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 7 transcripts:
ENSMUST00000004985.11
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR CAA 90 bp TTTTGGCACACAGCAGCCCTCCAGGGGAACCACATGATTGGTCAATATTGGGTCGAGGGTTTCTTGGACTaGGCAGGGAATTGGGGCTGC +
Preference number: 5 (lower is better)
Translates to: FWHTAALQGNHMIGQYWVEGFLD*AGNWGC
Trigger: GCAGCCCCAATTCCCTGCCAAGTCCAAGAAACCCTC...GACCCAATATTGACCAATCATGTGGTTCCCCTGGAGGGCTGCTGTGTGCCAAAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 7 transcripts:
ENSMUST00000004985.11
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR CAA 90 bp AACCTTGCCTGCCCTGAGGTATGGTTAGGTGGGAGAGACATGGAGAGAGCCGGCTTTGATGAGGGTTTCTaGGACTTGGCAGGGAATTGG +
Preference number: 5 (lower is better)
Translates to: NLACPEVWLGGRDMERAGFDEGF*DLAGNW
Trigger: CCAATTCCCTGCCAAGTCCAAGAAACCCTCATCAAA...GCCGGCTCTCTCCATGTCTCTCCCACCTAACCATACCTCAGGGCAGGCAAGGTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000004985.11
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR CAA 90 bp TACAGTTATGTACACCACGCCCTGTCCCGCGTGGCTGTGCTGTTTGCTGGACAGCCTTCCTCTTGCCCTTaGATGAGGGTTTCTTGGACT +
Preference number: 5 (lower is better)
Translates to: YSYVHHALSRVAVLFAGQPSSCP*MRVSWT
Trigger: AGTCCAAGAAACCCTCATCAAAGGGCAAGAGGAAGG...CTGTCCAGCAAACAGCACAGCCACGCGGGACAGGGCGTGGTGTACATAACTGTA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000004985.11
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233709.2
CDS-3UTR CAA 90 bp GGGACCCTGGCACATCTCTGGGATCAATGTCAGAACCTTGCCTGCCCTGAGGTACCTTCCTCTTGCCCTTaGATGAGGGTTTCTTGGACT +
Preference number: 5 (lower is better)
Translates to: GTLAHLWDQCQNLACPEVPSSCP*MRVSWT
Trigger: AGTCCAAGAAACCCTCATCAAAGGGCAAGAGGAAGG...TACCTCAGGGCAGGCAAGGTTCTGACATTGATCCCAGAGATGTGCCAGGGTCCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000004985.11
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR CAA 90 bp GGGACTCAAGCGCCTGGCAGACATCCATCTAATGTAGCAGCTGGCCAGGAAGGAAGGATGACATTGCTATaGTGGCACTCATCGTCCAGG +
Preference number: 5 (lower is better)
Translates to: GTQAPGRHPSNVAAGQEGRMTLL*WHSSSR
Trigger: CCTGGACGATGAGTGCCACAATAGCAATGTCATCCT...TCCTTCCTGGCCAGCTGCTACATTAGATGGATGTCTGCCAGGCGCTTGAGTCCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000004985.11
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR CAA 90 bp CCAGGGGAACCACATGATTGGTCAATATTGGGTCTTGCCCTCGGAGACCCAGTCTGGTGCACAGCTAAGTaGCAGATGTCGCAGAACAGG +
Preference number: 5 (lower is better)
Translates to: PGEPHDWSILGLALGDPVWCTAK*QMSQNR
Trigger: CCTGTTCTGCGACATCTGCAACTTAGCTGTGCACCA...GACTGGGTCTCCGAGGGCAAGACCCAATATTGACCAATCATGTGGTTCCCCTGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000004985.11
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR CAA 90 bp GGTCAATATTGGGTCTTGCCCTCGGAGACCCAGTCCAGTCAGGGCCTGCCATTACCATCACTGGTCTGTTaGAAGGCCCCACCTTTATTG +
Preference number: 5 (lower is better)
Translates to: GQYWVLPSETQSSQGLPLPSLVC*KAPPLL
Trigger: CAATAAAGGTGGGGCCTTCAAACAGACCAGTGATGG...TAATGGCAGGCCCTGACTGGACTGGGTCTCCGAGGGCAAGACCCAATATTGACC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000004985.11
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR CAA 90 bp GTCAACATGGCAATTGGCGGTCTGCAAACCCGCCTGCGGCTTTGGTGCTTAAAGTTGAGCTTCTCCCTTTaGCGGATGAGCTCGATCAGC +
Preference number: 5 (lower is better)
Translates to: VNMAIGGLQTRLRLWCLKLSFSL*RMSSIS
Trigger: GCTGATCGAGCTCATCCGCAAAAGGGAGAAGCTCAA...CTTTAAGCACCAAAGCCGCAGGCGGGTTTGCAGACCGCCAATTGCCATGTTGAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000004985.11
ENSMUST00000156029.8
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233709.2
CDS-3UTR CAA 90 bp CAACATGGCAATTGGCGGTCTGCAAACCCGCCTGCGGCTTTGGTGCTTAAAGAATTTTGCCGAAGGGCATaGATCTCCCTGCGCAGCATG +
Preference number: 5 (lower is better)
Translates to: QHGNWRSANPPAALVLKEFCRRA*ISLRSM
Trigger: CATGCTGCGCAGGGAGATCAATGCCCTTCGGCAAAA...TTCTTTAAGCACCAAAGCCGCAGGCGGGTTTGCAGACCGCCAATTGCCATGTTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000004985.11
ENSMUST00000156029.8
CDS-3UTR CAA 90 bp CTTGCCCTCGGAGACCCAGTCCAGTCAGGGCCTGCCATTAGAAAGAAGCTGCCGAGTCTGTCAATGCCATaGTCACTAAGCAAGCATTGC +
Preference number: 5 (lower is better)
Translates to: LALGDPVQSGPAIRKKLPSLSMP*SLSKHC
Trigger: GCAATGCTTGCTTAGTGACAATGGCATTGACAGACT...CGGCAGCTTCTTTCTAATGGCAGGCCCTGACTGGACTGGGTCTCCGAGGGCAAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000004985.11
ENSMUST00000156029.8
ENSMUST00000233701.2
CDS-3UTR CAA 90 bp GAGGGTCCTTACAGGTGGGGTAGCTTCTACCTGGGACTCAAGCGCCTGGCAGACAGTCTGTCAATGCCATaGTCACTAAGCAAGCATTGC +
Preference number: 5 (lower is better)
Translates to: EGPYRWGSFYLGLKRLADSLSMP*SLSKHC
Trigger: GCAATGCTTGCTTAGTGACAATGGCATTGACAGACT...GTCTGCCAGGCGCTTGAGTCCCAGGTAGAAGCTACCCCACCTGTAAGGACCCTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000004985.11
ENSMUST00000156029.8
ENSMUST00000233701.2
CDS-3UTR CAA 90 bp GTCTTGCCCTCGGAGACCCAGTCCAGTCAGGGCCTGCCATTAGAAAGAAGCTGCAGCTTAACTCCATTCTaGGCCTTCTTGAAGAGGACG +
Preference number: 5 (lower is better)
Translates to: VLPSETQSSQGLPLERSCSLTPF*AFLKRT
Trigger: CGTCCTCTTCAAGAAGGCCAAGAATGGAGTTAAGCT...GCAGCTTCTTTCTAATGGCAGGCCCTGACTGGACTGGGTCTCCGAGGGCAAGAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000004985.11
ENSMUST00000156029.8
ENSMUST00000233701.2
CDS-3UTR CAA 90 bp GGCAGACATCCATCTAATGTAGCAGCTGGCCAGGAAGGAAATGGGACATCAAAGTACAGCTCCGGCTCCTaGGCCGCTTCCGGGAATAGT +
Preference number: 5 (lower is better)
Translates to: GRHPSNVAAGQEGNGTSKYSSGS*AASGNS
Trigger: ACTATTCCCGGAAGCGGCCAAGGAGCCGGAGCTGTA...CTTTGATGTCCCATTTCCTTCCTGGCCAGCTGCTACATTAGATGGATGTCTGCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000004985.11
ENSMUST00000156029.8
ENSMUST00000233701.2
CDS-3UTR CAA 90 bp ATCAATTTGGTGATGTTGCTGTCAGTTTGGCACAAGGGAGAGCAGAGAGCAATGTTCCCACGGCTGCGTTaGGGAGGCGTCAGGCCACTG +
Preference number: 5 (lower is better)
Translates to: INLVMLLSVWHKGEQRAMFPRLR*GGVRPL
Trigger: CAGTGGCCTGACGCCTCCCAAACGCAGCCGTGGGAA...CATTGCTCTCTGCTCTCCCTTGTGCCAAACTGACAGCAACATCACCAAATTGAT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000004985.11
ENSMUST00000156029.8
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR CAA 90 bp CAACATGGCAATTGGCGGTCTGCAAACCCGCCTGCGGCTTTGGTGCTTAAAGAATTCCGGATGCTGGTCTaGCGGCCTTCTAGCATCTTG +
Preference number: 5 (lower is better)
Translates to: QHGNWRSANPPAALVLKEFRMLV*RPSSIL
Trigger: CAAGATGCTAGAAGGCCGCAAGACCAGCATCCGGAA...TTCTTTAAGCACCAAAGCCGCAGGCGGGTTTGCAGACCGCCAATTGCCATGTTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000004985.11
ENSMUST00000233088.2
ENSMUST00000233561.2
ENSMUST00000233646.2
CDS TCA 90 bp TCTGCCATCCTCCCAGGAGAATCGGTAAAAGTCTTCCAATCTGGGTaGTTCGGGCAAGTGGGTGCCCCTCTCAGGATCATAGCCGATGTT +
Preference number: 5 (lower is better)
Translates to: SAILPGESVKVFQSG*FGQVGAPLRIIADV
Trigger: AACATCGGCTATGATCCTGAGAGGGGCACCCACTTGCCCGAATCACCCAGATTGGAAGACTTTTACCGATTCTCCTGGGAGGATGGCAGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000233561.2
CDS-3UTR CAA 90 bp AGCCCTCCAGGGGAACCACATGATTGGTCAATATTGGGTCTTGCCCTCGGAGACCCTTCCTCTTGCCCTTaGATGAGGGTTTCTTGGACT +
Preference number: 5 (lower is better)
Translates to: SPPGEPHDWSILGLALGDPSSCP*MRVSWT
Trigger: AGTCCAAGAAACCCTCATCAAAGGGCAAGAGGAAGG...GTCTCCGAGGGCAAGACCCAATATTGACCAATCATGTGGTTCCCCTGGAGGGCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000004985.11
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR CAA 90 bp GGGACTCGGAGAGAGGGAAGGATTCCGAGACTGAAAAATAGAGACAGAGGAGATGTACCGGACGCATGCTaGGAACAGGACTCCTTCCTC +
Preference number: 5 (lower is better)
Translates to: GTRREGRIPRLKNRDRGDVPDAC*EQDSFL
Trigger: GAGGAAGGAGTCCTGTTCCAAGCATGCGTCCGGTAC...ATCTCCTCTGTCTCTATTTTTCAGTCTCGGAATCCTTCCCTCTCTCCGAGTCCC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000004985.11
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233709.2
CDS-3UTR CAA 90 bp CCAGGGGAACCACATGATTGGTCAATATTGGGTCTTGCCCTCGGAGACCCAGTCAGGATGACATTGCTATaGTGGCACTCATCGTCCAGG +
Preference number: 5 (lower is better)
Translates to: PGEPHDWSILGLALGDPVRMTLL*WHSSSR
Trigger: CCTGGACGATGAGTGCCACAATAGCAATGTCATCCT...GACTGGGTCTCCGAGGGCAAGACCCAATATTGACCAATCATGTGGTTCCCCTGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000004985.11
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR CAA 90 bp GTCAACATGGCAATTGGCGGTCTGCAAACCCGCCTGCGGCTTTGGTGCTTAAAGAGGATGACATTGCTATaGTGGCACTCATCGTCCAGG +
Preference number: 5 (lower is better)
Translates to: VNMAIGGLQTRLRLWCLKRMTLL*WHSSSR
Trigger: CCTGGACGATGAGTGCCACAATAGCAATGTCATCCT...CTTTAAGCACCAAAGCCGCAGGCGGGTTTGCAGACCGCCAATTGCCATGTTGAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000004985.11
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233709.2
CDS-3UTR CAA 90 bp GCGCCTGGCAGACATCCATCTAATGTAGCAGCTGGCCAGGAAGGAAATGGGACAAGGATGACATTGCTATaGTGGCACTCATCGTCCAGG +
Preference number: 5 (lower is better)
Translates to: APGRHPSNVAAGQEGNGTRMTLL*WHSSSR
Trigger: CCTGGACGATGAGTGCCACAATAGCAATGTCATCCT...TGTCCCATTTCCTTCCTGGCCAGCTGCTACATTAGATGGATGTCTGCCAGGCGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000004985.11
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR CAA 90 bp GGCTGTGCTGTTTGCTGGACAGAACCTGGCCCTCTTGGTGAGTTTTGTTGGTTCTGGTGCACAGCTAAGTaGCAGATGTCGCAGAACAGG +
Preference number: 5 (lower is better)
Translates to: GCAVCWTEPGPLGEFCWFWCTAK*QMSQNR
Trigger: CCTGTTCTGCGACATCTGCAACTTAGCTGTGCACCA...GAACCAACAAAACTCACCAAGAGGGCCAGGTTCTGTCCAGCAAACAGCACAGCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000004985.11
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233709.2
CDS-3UTR CAA 90 bp TCCATCAGTGAGCTCTGCTTCTGTAAGGAGAGCACCCACCATCAGCCTCTAGCGGTGGGGCAGGCAATTTaGAATCATCTCTGTCCCCTT +
Preference number: 5 (lower is better)
Translates to: SISELCFCKESTHHQPLAVGQAI*NHLCPL
Trigger: AAGGGGACAGAGATGATTCAAAATTGCCTGCCCCAC...CGCTAGAGGCTGATGGTGGGTGCTCTCCTTACAGAAGCAGAGCTCACTGATGGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000004985.11
CDS-3UTR CAA 90 bp AGGGTCCTTACAGGTGGGGTAGCTTCTACCTGGGACTCAAGCGCCTGGCAGACAAGTCTGTCAATGCCATaGTCACTAAGCAAGCATTGC +
Preference number: 5 (lower is better)
Translates to: RVLTGGVASTWDSSAWQTSLSMP*SLSKHC
Trigger: GCAATGCTTGCTTAGTGACAATGGCATTGACAGACT...TGTCTGCCAGGCGCTTGAGTCCCAGGTAGAAGCTACCCCACCTGTAAGGACCCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000004985.11
ENSMUST00000156029.8
ENSMUST00000233701.2
CDS GCA 90 bp GTAATCTGGAACCTCACTCAGGCTGACAGGTTCAGCAAAGATGTGTaGAGAGTCTTTCTCCTGCAGCAGGTCCAGAGTCGTCCTCAACAG +
Preference number: 5 (lower is better)
Translates to: VIWNLTQADRFSKDV*RVFLLQQVQSRPQQ
Trigger: CTGTTGAGGACGACTCTGGACCTGCTGCAGGAGAAAGACTCTGCACACATCTTTGCTGAACCTGTCAGCCTGAGTGAGGTTCCAGATTAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000004985.11
ENSMUST00000156029.8
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR CAA 90 bp GTCTTGCCCTCGGAGACCCAGTCCAGTCAGGGCCTGCCATTAGAAAGAAGCTGCTGCTCACTGTTTTCCTaGTTGCTATTGCATTCGGTA +
Preference number: 5 (lower is better)
Translates to: VLPSETQSSQGLPLERSCCSLFS*LLLHSV
Trigger: TACCGAATGCAATAGCAACAAGGAAAACAGTGAGCA...GCAGCTTCTTTCTAATGGCAGGCCCTGACTGGACTGGGTCTCCGAGGGCAAGAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000004985.11
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR CAA 90 bp GCGCCTGGCAGACATCCATCTAATGTAGCAGCTGGCCAGGAAGGAAATGGGACATTTGATGAGGGTTTCTaGGACTTGGCAGGGAATTGG +
Preference number: 5 (lower is better)
Translates to: APGRHPSNVAAGQEGNGTFDEGF*DLAGNW
Trigger: CCAATTCCCTGCCAAGTCCAAGAAACCCTCATCAAA...TGTCCCATTTCCTTCCTGGCCAGCTGCTACATTAGATGGATGTCTGCCAGGCGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000004985.11
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR CAA 90 bp CCAGGGGAACCACATGATTGGTCAATATTGGGTCTTGCCCTCGGAGACCCAGTCTTTGATGAGGGTTTCTaGGACTTGGCAGGGAATTGG +
Preference number: 5 (lower is better)
Translates to: PGEPHDWSILGLALGDPVFDEGF*DLAGNW
Trigger: CCAATTCCCTGCCAAGTCCAAGAAACCCTCATCAAA...GACTGGGTCTCCGAGGGCAAGACCCAATATTGACCAATCATGTGGTTCCCCTGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000004985.11
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR CAA 90 bp AAGGTAGAAGTCAACATGGCAATTGGCGGTCTGCAAACCCGCCTGCGGCTTTGGTTTGATGAGGGTTTCTaGGACTTGGCAGGGAATTGG +
Preference number: 5 (lower is better)
Translates to: KVEVNMAIGGLQTRLRLWFDEGF*DLAGNW
Trigger: CCAATTCCCTGCCAAGTCCAAGAAACCCTCATCAAA...CCAAAGCCGCAGGCGGGTTTGCAGACCGCCAATTGCCATGTTGACTTCTACCTT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000004985.11
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233709.2
CDS-3UTR CAA 90 bp GGTGATGTTGCTGTCAGTTTGGCACAAGGGAGAGCAGAGAGCAATGAGGGAAGGCCTTCCTCTTGCCCTTaGATGAGGGTTTCTTGGACT +
Preference number: 5 (lower is better)
Translates to: GDVAVSLAQGRAESNEGRPSSCP*MRVSWT
Trigger: AGTCCAAGAAACCCTCATCAAAGGGCAAGAGGAAGG...CCTTCCCTCATTGCTCTCTGCTCTCCCTTGTGCCAAACTGACAGCAACATCACC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000004985.11
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR CAA 90 bp GTGATGTTGCTGTCAGTTTGGCACAAGGGAGAGCAGAGAGCAATGAGGGAAGGGAGGATGACATTGCTATaGTGGCACTCATCGTCCAGG +
Preference number: 5 (lower is better)
Translates to: VMLLSVWHKGEQRAMREGRMTLL*WHSSSR
Trigger: CCTGGACGATGAGTGCCACAATAGCAATGTCATCCT...CCCTTCCCTCATTGCTCTCTGCTCTCCCTTGTGCCAAACTGACAGCAACATCAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000004985.11
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR CAA 90 bp GGCTGTGCTGTTTGCTGGACAGAACCTGGCCCTCTTGGTGAGTTTTGTTGGTTCAGGATGACATTGCTATaGTGGCACTCATCGTCCAGG +
Preference number: 5 (lower is better)
Translates to: GCAVCWTEPGPLGEFCWFRMTLL*WHSSSR
Trigger: CCTGGACGATGAGTGCCACAATAGCAATGTCATCCT...GAACCAACAAAACTCACCAAGAGGGCCAGGTTCTGTCCAGCAAACAGCACAGCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000004985.11
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233709.2
CDS-3UTR CAA 90 bp AAGGAGACAGAAAGGGAGAAGCCCCAAGATCTTGACACAGGTTTAGACAAGGGTAACAATCCTCTGGGCTaGGGCGTAAGTCAGGGTCTC +
Preference number: 5 (lower is better)
Translates to: KETEREKPQDLDTGLDKGNNPLG*GVSQGL
Trigger: GAGACCCTGACTTACGCCCAAGCCCAGAGGATTGTT...ACCCTTGTCTAAACCTGTGTCAAGATCTTGGGGCTTCTCCCTTTCTGTCTCCTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000004985.11
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233709.2
CDS-3UTR CAA 90 bp TGGTCAATATTGGGTCTTGCCCTCGGAGACCCAGTCCAGTCAGGGCCTGCCATTTGCTCACTGTTTTCCTaGTTGCTATTGCATTCGGTA +
Preference number: 5 (lower is better)
Translates to: WSILGLALGDPVQSGPAICSLFS*LLLHSV
Trigger: TACCGAATGCAATAGCAACAAGGAAAACAGTGAGCA...AATGGCAGGCCCTGACTGGACTGGGTCTCCGAGGGCAAGACCCAATATTGACCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000004985.11
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR CAA 90 bp GCCCTCTTGGTGAGTTTTGTTGGTTCCCTTTTAAACTCTGGCTCGAGTCCCAAAGGACTTGGCAGGGAATaGGGGCTGCTCACTGTTTTC +
Preference number: 5 (lower is better)
Translates to: ALLVSFVGSLLNSGSSPKGLGRE*GLLTVF
Trigger: GAAAACAGTGAGCAGCCCCAATTCCCTGCCAAGTCC...TTTGGGACTCGAGCCAGAGTTTAAAAGGGAACCAACAAAACTCACCAAGAGGGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 5 transcripts:
ENSMUST00000004985.11
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233709.2
CDS-3UTR CAA 90 bp GCTGTTTCTACTTCTAAGTGGTTCTTCAGTGGAATATCCCCAGGGACCTCGGGTTGGTGCACAGCTAAGTaGCAGATGTCGCAGAACAGG +
Preference number: 5 (lower is better)
Translates to: AVSTSKWFFSGISPGTSGWCTAK*QMSQNR
Trigger: CCTGTTCTGCGACATCTGCAACTTAGCTGTGCACCA...ACCCGAGGTCCCTGGGGATATTCCACTGAAGAACCACTTAGAAGTAGAAACAGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000004985.11
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR CAA 90 bp AAGGAGACAGAAAGGGAGAAGCCCCAAGATCTTGACACAGGTTTAGACAAGGGTCCATTCTTGGCCTTCTaGAAGAGGACGGAGGTTCGG +
Preference number: 5 (lower is better)
Translates to: KETEREKPQDLDTGLDKGPFLAF*KRTEVR
Trigger: CCGAACCTCCGTCCTCTTCAAGAAGGCCAAGAATGG...ACCCTTGTCTAAACCTGTGTCAAGATCTTGGGGCTTCTCCCTTTCTGTCTCCTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000004985.11
ENSMUST00000156029.8
CDS-3UTR CAA 90 bp CAATATTGGGTCTTGCCCTCGGAGACCCAGTCCAGTCAGGGCCTGCCATTAGAATGCTCACTGTTTTCCTaGTTGCTATTGCATTCGGTA +
Preference number: 5 (lower is better)
Translates to: QYWVLPSETQSSQGLPLECSLFS*LLLHSV
Trigger: TACCGAATGCAATAGCAACAAGGAAAACAGTGAGCA...TTCTAATGGCAGGCCCTGACTGGACTGGGTCTCCGAGGGCAAGACCCAATATTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000004985.11
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR CAA 90 bp GTTGGTTCCCTTTTAAACTCTGGCTCGAGTCCCAAAAGTGTAAGAAGTTGGTGGGGACTTGGCAGGGAATaGGGGCTGCTCACTGTTTTC +
Preference number: 5 (lower is better)
Translates to: VGSLLNSGSSPKSVRSWWGLGRE*GLLTVF
Trigger: GAAAACAGTGAGCAGCCCCAATTCCCTGCCAAGTCC...CCACCAACTTCTTACACTTTTGGGACTCGAGCCAGAGTTTAAAAGGGAACCAAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 20 nt.
Matches the following 5 transcripts:
ENSMUST00000004985.11
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233709.2
CDS-3UTR CAA 90 bp GCCCTCTTGGTGAGTTTTGTTGGTTCCCTTTTAAACTCTGGCTCGAGTCCCAAATTGAGCTTCTCCCTTTaGCGGATGAGCTCGATCAGC +
Preference number: 5 (lower is better)
Translates to: ALLVSFVGSLLNSGSSPKLSFSL*RMSSIS
Trigger: GCTGATCGAGCTCATCCGCAAAAGGGAGAAGCTCAA...TTTGGGACTCGAGCCAGAGTTTAAAAGGGAACCAACAAAACTCACCAAGAGGGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000004985.11
ENSMUST00000156029.8
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233709.2
CDS-3UTR CAA 90 bp ATCAATTTGGTGATGTTGCTGTCAGTTTGGCACAAGGGAGAGCAGAGAGCAATGTGGTGCACAGCTAAGTaGCAGATGTCGCAGAACAGG +
Preference number: 5 (lower is better)
Translates to: INLVMLLSVWHKGEQRAMWCTAK*QMSQNR
Trigger: CCTGTTCTGCGACATCTGCAACTTAGCTGTGCACCA...CATTGCTCTCTGCTCTCCCTTGTGCCAAACTGACAGCAACATCACCAAATTGAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000004985.11
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR CAA 90 bp AAAAATAACATCAAGGTAGAAGTCAACATGGCAATTGGCGGTCTGCAAACCCGCTTGAGCTTCTCCCTTTaGCGGATGAGCTCGATCAGC +
Preference number: 5 (lower is better)
Translates to: KNNIKVEVNMAIGGLQTRLSFSL*RMSSIS
Trigger: GCTGATCGAGCTCATCCGCAAAAGGGAGAAGCTCAA...GCGGGTTTGCAGACCGCCAATTGCCATGTTGACTTCTACCTTGATGTTATTTTT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 6 transcripts:
ENSMUST00000004985.11
ENSMUST00000156029.8
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233709.2
CDS-3UTR CAA 90 bp AAGAAATGTCAAGAGCAGAAGCCTCTGAGAGCTGCGTTGGCTTGTCAGTCAGCTTGCTCACTGTTTTCCTaGTTGCTATTGCATTCGGTA +
Preference number: 5 (lower is better)
Translates to: KKCQEQKPLRAALACQSACSLFS*LLLHSV
Trigger: TACCGAATGCAATAGCAACAAGGAAAACAGTGAGCA...AGCTGACTGACAAGCCAACGCAGCTCTCAGAGGCTTCTGCTCTTGACATTTCTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000004985.11
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233709.2
CDS-3UTR CAA 90 bp GCTGTTTCTACTTCTAAGTGGTTCTTCAGTGGAATATCCCCAGGGACCTCGGGTTGCTCACTGTTTTCCTaGTTGCTATTGCATTCGGTA +
Preference number: 5 (lower is better)
Translates to: AVSTSKWFFSGISPGTSGCSLFS*LLLHSV
Trigger: TACCGAATGCAATAGCAACAAGGAAAACAGTGAGCA...ACCCGAGGTCCCTGGGGATATTCCACTGAAGAACCACTTAGAAGTAGAAACAGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000004985.11
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR CAA 90 bp ATCAATTTGGTGATGTTGCTGTCAGTTTGGCACAAGGGAGAGCAGAGAGCAATGTTTGATGAGGGTTTCTaGGACTTGGCAGGGAATTGG +
Preference number: 5 (lower is better)
Translates to: INLVMLLSVWHKGEQRAMFDEGF*DLAGNW
Trigger: CCAATTCCCTGCCAAGTCCAAGAAACCCTCATCAAA...CATTGCTCTCTGCTCTCCCTTGTGCCAAACTGACAGCAACATCACCAAATTGAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000004985.11
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS-3UTR CAA 90 bp ATAAAGTCACTTTCTACAATAAATAGAGCATCATGTGCTTCACAGCAGACCAGACCCTCCCGGGGCATCTaGGGATCGATGATCAAGGCA +
Preference number: 5 (lower is better)
Translates to: IKSLSTINRASCASQQTRPSRGI*GSMIKA
Trigger: TGCCTTGATCATCGATCCCAAGATGCCCCGGGAGGG...TCTGGTCTGCTGTGAAGCACATGATGCTCTATTTATTGTAGAAAGTGACTTTAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000004985.11
ENSMUST00000156029.8
ENSMUST00000233088.2
CDS CCA 90 bp GTACAGGTGAGATTCCAGCTTCCGCCTCATAGTAGAAAAATCCATTaGCTTGGATATGAATTCCAGGTAATCTGGAACCTCACTCAGGCT +
Preference number: 5 (lower is better)
Translates to: VQVRFQLPPHSRKIH*LGYEFQVIWNLTQA
Trigger: AGCCTGAGTGAGGTTCCAGATTACCTGGAATTCATATCCAAGCCAATGGATTTTTCTACTATGAGGCGGAAGCTGGAATCTCACCTGTAC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 6 transcripts:
ENSMUST00000004985.11
ENSMUST00000156029.8
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS CAA 72 bp GGCACACGAGACAGGGCTGGCTTCCCACGGCTGCGTTaGGGAGGCGTCAGGCCACTGCCAGCTTCAAACGCC +
Preference number: 6 (lower is better)
Translates to: GTRDRAGFPRLR*GGVRPLPASNA
Trigger: GGCGTTTGAAGCTGGCAGTGGCCTGACGCCTCCCAAACGCAGCCGTGGGAAGCCAGCCCTGTCTCGTGTGCC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000004985.11
ENSMUST00000156029.8
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS GCA 72 bp CTTCTCAAGCCGGTCCACCAGCAGCTCGAAGGTGTCTaGCGACACCGAGCTGTGGCCGTCTGCTCGGCGCTT +
Preference number: 6 (lower is better)
Translates to: LLKPVHQQLEGV*RHRAVAVCSAL
Trigger: AAGCGCCGAGCAGACGGCCACAGCTCGGTGTCGGCAGACACCTTCGAGCTGCTGGTGGACCGGCTTGAGAAG
65% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000004985.11
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS GCA 72 bp GGAAGGGCACACGAGACAGGGCTGGCTTCCCACGGCTaGGTTTGGGAGGCGTCAGGCCACTGCCAGCTTCAA +
Preference number: 6 (lower is better)
Translates to: GRAHETGLASHG*VWEASGHCQLQ
Trigger: TTGAAGCTGGCAGTGGCCTGACGCCTCCCAAACGCAGCCGTGGGAAGCCAGCCCTGTCTCGTGTGCCCTTCC
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000004985.11
ENSMUST00000156029.8
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS CCA 72 bp GCACACGAGACAGGGCTGGCTTCCCACGGCTGCGTTTaGGAGGCGTCAGGCCACTGCCAGCTTCAAACGCCA +
Preference number: 6 (lower is better)
Translates to: AHETGLASHGCV*EASGHCQLQTP
Trigger: TGGCGTTTGAAGCTGGCAGTGGCCTGACGCCTCCCAAACGCAGCCGTGGGAAGCCAGCCCTGTCTCGTGTGC
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000004985.11
ENSMUST00000156029.8
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS CAA 90 bp TCCAGGAAGGGCACACGAGACAGGGCTGGCTTCCCACGGCTGCGTTaGGGAGGCGTCAGGCCACTGCCAGCTTCAAACGCCAGTCCTCCA +
Preference number: 6 (lower is better)
Translates to: SRKGTRDRAGFPRLR*GGVRPLPASNASPP
Trigger: TGGAGGACTGGCGTTTGAAGCTGGCAGTGGCCTGACGCCTCCCAAACGCAGCCGTGGGAAGCCAGCCCTGTCTCGTGTGCCCTTCCTGGA
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000004985.11
ENSMUST00000156029.8
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS CCA 72 bp CTTCTGGCTGGCTCCCCGTATCCACCACACGAAAGCTaGGCTGGGGGAGGTGGAAGGAGGTACCGGACGCAT +
Preference number: 6 (lower is better)
Translates to: LLAGSPYPPHES*AGGGGRRYRTH
Trigger: ATGCGTCCGGTACCTCCTTCCACCTCCCCCAGCCCAGCTTTCGTGTGGTGGATACGGGGAGCCAGCCAGAAG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 7 transcripts:
ENSMUST00000004985.11
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS CCA 72 bp CGGCCCATCCTCATCCCCGACTTCACTGAGGCTCCTTaGGGAGTCGCCCTTTCTCCTGGCAACGGCCACACT +
Preference number: 6 (lower is better)
Translates to: RPILIPDFTEAP*GVALSPGNGHT
Trigger: AGTGTGGCCGTTGCCAGGAGAAAGGGCGACTCCCCAAGGAGCCTCAGTGAAGTCGGGGATGAGGATGGGCCG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000004985.11
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS CCA 72 bp ATTCACACCTTCCAGGAAGGGCACACGAGACAGGGCTaGCTTCCCACGGCTGCGTTTGGGAGGCGTCAGGCC +
Preference number: 6 (lower is better)
Translates to: IHTFQEGHTRQG*LPTAAFGRRQA
Trigger: GGCCTGACGCCTCCCAAACGCAGCCGTGGGAAGCCAGCCCTGTCTCGTGTGCCCTTCCTGGAAGGTGTGAAT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000004985.11
ENSMUST00000156029.8
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS CCA 72 bp CCCGTATCCACCACACGAAAGCTGGGCTGGGGGAGGTaGAAGGAGGTACCGGACGCATGCTTGGAACAGGAC +
Preference number: 6 (lower is better)
Translates to: PVSTTRKLGWGR*KEVPDACLEQD
Trigger: GTCCTGTTCCAAGCATGCGTCCGGTACCTCCTTCCACCTCCCCCAGCCCAGCTTTCGTGTGGTGGATACGGG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 7 transcripts:
ENSMUST00000004985.11
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS CCA 72 bp ACCAGCAGCTCGAAGGTGTCTGCCGACACCGAGCTGTaGCCGTCTGCTCGGCGCTTCTCGTTGACCATGTCT +
Preference number: 6 (lower is better)
Translates to: TSSSKVSADTEL*PSARRFSLTMS
Trigger: AGACATGGTCAACGAGAAGCGCCGAGCAGACGGCCACAGCTCGGTGTCGGCAGACACCTTCGAGCTGCTGGT
62% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000004985.11
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS CAA 72 bp GACACCGAGCTGTGGCCGTCTGCTCGGCGCTTCTCGTaGACCATGTCTAGCCAGGCAATGTCCTCCTCGTCC +
Preference number: 6 (lower is better)
Translates to: DTELWPSARRFS*TMSSQAMSSSS
Trigger: GGACGAGGAGGACATTGCCTGGCTAGACATGGTCAACGAGAAGCGCCGAGCAGACGGCCACAGCTCGGTGTC
62% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000004985.11
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS CAA 90 bp GTGTCTGCCGACACCGAGCTGTGGCCGTCTGCTCGGCGCTTCTCGTaGACCATGTCTAGCCAGGCAATGTCCTCCTCGTCCATGTCGTAC +
Preference number: 6 (lower is better)
Translates to: VSADTELWPSARRFS*TMSSQAMSSSSMSY
Trigger: GTACGACATGGACGAGGAGGACATTGCCTGGCTAGACATGGTCAACGAGAAGCGCCGAGCAGACGGCCACAGCTCGGTGTCGGCAGACAC
61% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000004985.11
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS TCA 72 bp ACACCGAGCTGTGGCCGTCTGCTCGGCGCTTCTCGTTaGCCATGTCTAGCCAGGCAATGTCCTCCTCGTCCA +
Preference number: 6 (lower is better)
Translates to: TPSCGRLLGASR*PCLARQCPPRP
Trigger: TGGACGAGGAGGACATTGCCTGGCTAGACATGGTCAACGAGAAGCGCCGAGCAGACGGCCACAGCTCGGTGT
61% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000004985.11
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS TCA 72 bp CACCCTCTTTCGGCCCATCCTCATCCCCGACTTCACTaGGGCTCCTTGGGGAGTCGCCCTTTCTCCTGGCAA +
Preference number: 6 (lower is better)
Translates to: HPLSAHPHPRLH*GSLGSRPFSWQ
Trigger: TTGCCAGGAGAAAGGGCGACTCCCCAAGGAGCCTCAGTGAAGTCGGGGATGAGGATGGGCCGAAAGAGGGTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000004985.11
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS CCA 72 bp TGCTCCCGCTGCTCAGCATTTCTCTGGGACTGTAAGTaGGAGTGCAGGCGCCTGATGAGGGGGACACCGTTC +
Preference number: 6 (lower is better)
Translates to: CSRCSAFLWDCK*ECRRLMRGTPF
Trigger: GAACGGTGTCCCCCTCATCAGGCGCCTGCACTCCCACTTACAGTCCCAGAGAAATGCTGAGCAGCGGGAGCA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 8 transcripts:
ENSMUST00000004985.11
ENSMUST00000156029.8
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS TCA 72 bp CTGGGCTTGGGCGTAAGTCAGGGTCTCCCGTGTGGGTaGGCACTTAAGACTGTATGGGGATGGGGATCTCCG +
Preference number: 6 (lower is better)
Translates to: LGLGVSQGLPCG*ALKTVWGWGSP
Trigger: CGGAGATCCCCATCCCCATACAGTCTTAAGTGCTCACCCACACGGGAGACCCTGACTTACGCCCAAGCCCAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000004985.11
ENSMUST00000136233.2
ENSMUST00000232705.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS GCA 72 bp CTGGGCTGGGGGAGGTGGAAGGAGGTACCGGACGCATaGTTGGAACAGGACTCCTTCCTCTTGCCCTTTGAT +
Preference number: 6 (lower is better)
Translates to: LGWGRWKEVPDA*LEQDSFLLPFD
Trigger: ATCAAAGGGCAAGAGGAAGGAGTCCTGTTCCAAGCATGCGTCCGGTACCTCCTTCCACCTCCCCCAGCCCAG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 8 transcripts:
ENSMUST00000004985.11
ENSMUST00000136233.2
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS GCA 72 bp CTGTGGGACAGTGACCATGGGGAGAGTGATGGAGGGTaGCTCTCGGCCAGCTTCCTCTGGCTCCTTCTTGAT +
Preference number: 6 (lower is better)
Translates to: LWDSDHGESDGG*LSASFLWLLLD
Trigger: ATCAAGAAGGAGCCAGAGGAAGCTGGCCGAGAGGCACCCTCCATCACTCTCCCCATGGTCACTGTCCCACAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000004985.11
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS CCA 72 bp GCTGGGGGAGGTGGAAGGAGGTACCGGACGCATGCTTaGAACAGGACTCCTTCCTCTTGCCCTTTGATGAGG +
Preference number: 6 (lower is better)
Translates to: AGGGGRRYRTHA*NRTPSSCPLMR
Trigger: CCTCATCAAAGGGCAAGAGGAAGGAGTCCTGTTCCAAGCATGCGTCCGGTACCTCCTTCCACCTCCCCCAGC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 8 transcripts:
ENSMUST00000004985.11
ENSMUST00000136233.2
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS CCA 72 bp TGGGGAGTCGCCCTTTCTCCTGGCAACGGCCACACTTaGAGAGTGGGCCTCACAATACGCAGTCTTGCGAAC +
Preference number: 6 (lower is better)
Translates to: WGVALSPGNGHT*RVGLTIRSLAN
Trigger: GTTCGCAAGACTGCGTATTGTGAGGCCCACTCTCCAAGTGTGGCCGTTGCCAGGAGAAAGGGCGACTCCCCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000004985.11
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS CCA 72 bp GTCTTCTCGTCCTGCTCCCGCTGCTCAGCATTTCTCTaGGACTGTAAGTGGGAGTGCAGGCGCCTGATGAGG +
Preference number: 6 (lower is better)
Translates to: VFSSCSRCSAFL*DCKWECRRLMR
Trigger: CCTCATCAGGCGCCTGCACTCCCACTTACAGTCCCAGAGAAATGCTGAGCAGCGGGAGCAGGACGAGAAGAC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000004985.11
ENSMUST00000156029.8
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS CAA 72 bp GGCTGGGGGAGGTGGAAGGAGGTACCGGACGCATGCTaGGAACAGGACTCCTTCCTCTTGCCCTTTGATGAG +
Preference number: 6 (lower is better)
Translates to: GWGRWKEVPDAC*EQDSFLLPFDE
Trigger: CTCATCAAAGGGCAAGAGGAAGGAGTCCTGTTCCAAGCATGCGTCCGGTACCTCCTTCCACCTCCCCCAGCC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 8 transcripts:
ENSMUST00000004985.11
ENSMUST00000136233.2
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS CAA 90 bp CGAAAGCTGGGCTGGGGGAGGTGGAAGGAGGTACCGGACGCATGCTaGGAACAGGACTCCTTCCTCTTGCCCTTTGATGAGGGTTTCTTG +
Preference number: 6 (lower is better)
Translates to: RKLGWGRWKEVPDAC*EQDSFLLPFDEGFL
Trigger: CAAGAAACCCTCATCAAAGGGCAAGAGGAAGGAGTCCTGTTCCAAGCATGCGTCCGGTACCTCCTTCCACCTCCCCCAGCCCAGCTTTCG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 7 transcripts:
ENSMUST00000004985.11
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS GCA 72 bp AGCTCCAGCTCCATGGCAGCCTGCTGTACTTTGACCTaGTCCCGCTTGAGCTTCTCCCTTTTGCGGATGAGC +
Preference number: 6 (lower is better)
Translates to: SSSSMAACCTLT*SRLSFSLLRMS
Trigger: GCTCATCCGCAAAAGGGAGAAGCTCAAGCGGGAGCAGGTCAAAGTACAGCAGGCTGCCATGGAGCTGGAGCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000004985.11
ENSMUST00000156029.8
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS GCA 72 bp ACCGTAAACGGCATCAGCTCCAGCTCCATGGCAGCCTaGTGTACTTTGACCTGCTCCCGCTTGAGCTTCTCC +
Preference number: 6 (lower is better)
Translates to: TVNGISSSSMAA*CTLTCSRLSFS
Trigger: GGAGAAGCTCAAGCGGGAGCAGGTCAAAGTACAGCAGGCTGCCATGGAGCTGGAGCTGATGCCGTTTACGGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000004985.11
ENSMUST00000156029.8
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS CCA 72 bp AGGCTTCTCAATGTATCGGTAGTAAGCAGCAGGCAATaGGGGCGCTTCTGGCTGGCTCCCCGTATCCACCAC +
Preference number: 6 (lower is better)
Translates to: RLLNVSVVSSRQ*GRFWLAPRIHH
Trigger: GTGGTGGATACGGGGAGCCAGCCAGAAGCGCCCCCATTGCCTGCTGCTTACTACCGATACATTGAGAAGCCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000004985.11
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS CAA 90 bp AGGTACCGGACGCATGCTTGGAACAGGACTCCTTCCTCTTGCCCTTaGATGAGGGTTTCTTGGACTTGGCAGGGAATTGGGGCTGCTCAC +
Preference number: 6 (lower is better)
Translates to: RYRTHAWNRTPSSCP*MRVSWTWQGIGAAH
Trigger: GTGAGCAGCCCCAATTCCCTGCCAAGTCCAAGAAACCCTCATCAAAGGGCAAGAGGAAGGAGTCCTGTTCCAAGCATGCGTCCGGTACCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000004985.11
ENSMUST00000136233.2
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS CAA 90 bp CTGGCAACGGCCACACTTGGAGAGTGGGCCTCACAATACGCAGTCTaGCGAACAGTAAAGGTGGTGCCGTTGAGGCTGGTTTCTCTCATG +
Preference number: 6 (lower is better)
Translates to: LATATLGEWASQYAV*RTVKVVPLRLVSLM
Trigger: CATGAGAGAAACCAGCCTCAACGGCACCACCTTTACTGTTCGCAAGACTGCGTATTGTGAGGCCCACTCTCCAAGTGTGGCCGTTGCCAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000004985.11
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS TCA 72 bp TCAGGCCACTGCCAGCTTCAAACGCCAGTCCTCCACTaGGACCCAAACTACATTCCGAGTCAGACCCGCTTT +
Preference number: 6 (lower is better)
Translates to: SGHCQLQTPVLH*DPNYIPSQTRF
Trigger: AAAGCGGGTCTGACTCGGAATGTAGTTTGGGTCTCAGTGGAGGACTGGCGTTTGAAGCTGGCAGTGGCCTGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000004985.11
ENSMUST00000156029.8
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS GCA 72 bp TCCTTCACTGCACTAGTCTTCTCGTCCTGCTCCCGCTaGTCAGCATTTCTCTGGGACTGTAAGTGGGAGTGC +
Preference number: 6 (lower is better)
Translates to: SFTALVFSSCSR*SAFLWDCKWEC
Trigger: GCACTCCCACTTACAGTCCCAGAGAAATGCTGAGCAGCGGGAGCAGGACGAGAAGACTAGTGCAGTGAAGGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000004985.11
ENSMUST00000156029.8
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS CCA 72 bp TCGCCCTTTCTCCTGGCAACGGCCACACTTGGAGAGTaGGCCTCACAATACGCAGTCTTGCGAACAGTAAAG +
Preference number: 6 (lower is better)
Translates to: SPFLLATATLGE*ASQYAVLRTVK
Trigger: CTTTACTGTTCGCAAGACTGCGTATTGTGAGGCCCACTCTCCAAGTGTGGCCGTTGCCAGGAGAAAGGGCGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000004985.11
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS GCA 72 bp TTGAGCTCCTCCTTCACTGCACTAGTCTTCTCGTCCTaGTCCCGCTGCTCAGCATTTCTCTGGGACTGTAAG +
Preference number: 6 (lower is better)
Translates to: LSSSFTALVFSS*SRCSAFLWDCK
Trigger: CTTACAGTCCCAGAGAAATGCTGAGCAGCGGGAGCAGGACGAGAAGACTAGTGCAGTGAAGGAGGAGCTCAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000004985.11
ENSMUST00000156029.8
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS GCA 72 bp ACAGGTTCAGCAAAGATGTGTGCAGAGTCTTTCTCCTaGAGCAGGTCCAGAGTCGTCCTCAACAGGACCGTA +
Preference number: 6 (lower is better)
Translates to: TGSAKMCAESFS*SRSRVVLNRTV
Trigger: TACGGTCCTGTTGAGGACGACTCTGGACCTGCTGCAGGAGAAAGACTCTGCACACATCTTTGCTGAACCTGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000004985.11
ENSMUST00000156029.8
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS GCA 72 bp AACCTCACTCAGGCTGACAGGTTCAGCAAAGATGTGTaGAGAGTCTTTCTCCTGCAGCAGGTCCAGAGTCGT +
Preference number: 6 (lower is better)
Translates to: NLTQADRFSKDV*RVFLLQQVQSR
Trigger: ACGACTCTGGACCTGCTGCAGGAGAAAGACTCTGCACACATCTTTGCTGAACCTGTCAGCCTGAGTGAGGTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000004985.11
ENSMUST00000156029.8
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS CCA 72 bp AGGACTCCTTCCTCTTGCCCTTTGATGAGGGTTTCTTaGACTTGGCAGGGAATTGGGGCTGCTCACTGTTTT +
Preference number: 6 (lower is better)
Translates to: RTPSSCPLMRVS*TWQGIGAAHCF
Trigger: AAAACAGTGAGCAGCCCCAATTCCCTGCCAAGTCCAAGAAACCCTCATCAAAGGGCAAGAGGAAGGAGTCCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000004985.11
ENSMUST00000136233.2
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS CCA 72 bp ACTACAGATCTTGTTCAACCTGTAAGAGGGTATCTGTaGGACAGTGACCATGGGGAGAGTGATGGAGGGTGC +
Preference number: 6 (lower is better)
Translates to: TTDLVQPVRGYL*DSDHGESDGGC
Trigger: GCACCCTCCATCACTCTCCCCATGGTCACTGTCCCACAGATACCCTCTTACAGGTTGAACAAGATCTGTAGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000004985.11
ENSMUST00000232705.2
ENSMUST00000232997.2
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2
CDS CCA 72 bp AAAATCCATTGGCTTGGATATGAATTCCAGGTAATCTaGAACCTCACTCAGGCTGACAGGTTCAGCAAAGAT +
Preference number: 6 (lower is better)
Translates to: KIHWLGYEFQVI*NLTQADRFSKD
Trigger: ATCTTTGCTGAACCTGTCAGCCTGAGTGAGGTTCCAGATTACCTGGAATTCATATCCAAGCCAATGGATTTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000004985.11
ENSMUST00000156029.8
ENSMUST00000233561.2
ENSMUST00000233646.2
ENSMUST00000233701.2
ENSMUST00000233709.2