Pregenerated sensors for BRMS1L (Mus musculus)
Ensembl gene IDs: ENSMUSG00000012076Ensembl transcript IDs: ENSMUST00000059250.8, ENSMUST00000219419.2
Found 84 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | ATTAAAGTGCATGAGACCAGCAGAGCACTTCATTTGGCTGTACCCTaGGTACACACTGTAGCCCACTGTGCCTCCGGGCTGAGGGCTCCG | + |
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Preference number: 1 (lower is better) Translates to: IKVHETSRALHLAVP*VHTVAHCASGLRAP Trigger: CGGAGCCCTCAGCCCGGAGGCACAGTGGGCTACAGTGTGTACGCAGGGTACAGCCAAATGAAGTGCTCTGCTGGTCTCATGCACTTTAAT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000059250.8 |
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| 3UTR GCA 90 bp | CACACTGTAGCCCACTGTGCCTCCGGGCTGAGGGCTCCGGTTTCCTaGACAGTTCCAGAGGCTTCCAAGTTCATTCTGAATATGGCTAAG | + |
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Preference number: 1 (lower is better) Translates to: HTVAHCASGLRAPVS*TVPEASKFILNMAK Trigger: CTTAGCCATATTCAGAATGAACTTGGAAGCCTCTGGAACTGTGCAGGAAACCGGAGCCCTCAGCCCGGAGGCACAGTGGGCTACAGTGTG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000059250.8 |
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| 3UTR TCA 90 bp | GGGCTCCGGTTTCCTGCACAGTTCCAGAGGCTTCCAAGTTCATTCTaGATATGGCTAAGGGAAGGGAGGCCAACATTTTCTAAATTGCAC | + |
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Preference number: 1 (lower is better) Translates to: GLRFPAQFQRLPSSF*IWLREGRPTFSKLH Trigger: GTGCAATTTAGAAAATGTTGGCCTCCCTTCCCTTAGCCATATTCAGAATGAACTTGGAAGCCTCTGGAACTGTGCAGGAAACCGGAGCCC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000059250.8 |
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| 3UTR TCA 90 bp | AATTTGGCAACTGTGGAGTATACCTGCAGGGAATGTCTGCAGAGGTaGAGTCATAAGGAACTAACGGAATCATGCAGAGACTCCTTTGAG | + |
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Preference number: 1 (lower is better) Translates to: NLATVEYTCRECLQR*SHKELTESCRDSFE Trigger: CTCAAAGGAGTCTCTGCATGATTCCGTTAGTTCCTTATGACTTCACCTCTGCAGACATTCCCTGCAGGTATACTCCACAGTTGCCAAATT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000059250.8 ENSMUST00000219419.2 |
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| 3UTR GCA 90 bp | TATATATTTATAAGCACTGCCAAATGCTACTGGATTGGGACAGTCTaGACAGCCGCTAAGGGTGATCAGAAACAGAACAGAGCAGCACAA | + |
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Preference number: 1 (lower is better) Translates to: YIFISTAKCYWIGTV*TAAKGDQKQNRAAQ Trigger: TTGTGCTGCTCTGTTCTGTTTCTGATCACCCTTAGCGGCTGTGCAGACTGTCCCAATCCAGTAGCATTTGGCAGTGCTTATAAATATATA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000059250.8 ENSMUST00000219419.2 |
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| 3UTR CCA 90 bp | CTGATACTGAACTTCGAAAGTCAGATGGTTACAATTTGGCAACTGTaGAGTATACCTGCAGGGAATGTCTGCAGAGGTGAAGTCATAAGG | + |
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Preference number: 1 (lower is better) Translates to: LILNFESQMVTIWQL*SIPAGNVCRGEVIR Trigger: CCTTATGACTTCACCTCTGCAGACATTCCCTGCAGGTATACTCCACAGTTGCCAAATTGTAACCATCTGACTTTCGAAGTTCAGTATCAG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000059250.8 ENSMUST00000219419.2 |
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| 3UTR TCA 90 bp | ATGTGGGGTCTACTTGGAGTACTACCTAGAAGACACAGTCTCTCATaGCTGGATGAAATTATTAAGCTGCTGAGTGCATTCTCTTGGCTT | + |
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Preference number: 1 (lower is better) Translates to: MWGLLGVLPRRHSLS*LDEIIKLLSAFSWL Trigger: AAGCCAAGAGAATGCACTCAGCAGCTTAATAATTTCATCCAGTCATGAGAGACTGTGTCTTCTAGGTAGTACTCCAAGTAGACCCCACAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000059250.8 ENSMUST00000219419.2 |
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| 3UTR CCA 90 bp | CTGGATGAAATTATTAAGCTGCTGAGTGCATTCTCTTGGCTTCCATaGCACATTACACTTGGTAACACTAACAAGGTAGATGTGGGGAAC | + |
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Preference number: 1 (lower is better) Translates to: LDEIIKLLSAFSWLP*HITLGNTNKVDVGN Trigger: GTTCCCCACATCTACCTTGTTAGTGTTACCAAGTGTAATGTGCCATGGAAGCCAAGAGAATGCACTCAGCAGCTTAATAATTTCATCCAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000059250.8 ENSMUST00000219419.2 |
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| 3UTR TCA 90 bp | CTAGAAGACACAGTCTCTCATGACTGGATGAAATTATTAAGCTGCTaGGTGCATTCTCTTGGCTTCCATGGCACATTACACTTGGTAACA | + |
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Preference number: 1 (lower is better) Translates to: LEDTVSHDWMKLLSC*VHSLGFHGTLHLVT Trigger: TGTTACCAAGTGTAATGTGCCATGGAAGCCAAGAGAATGCACTCAGCAGCTTAATAATTTCATCCAGTCATGAGAGACTGTGTCTTCTAG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000059250.8 ENSMUST00000219419.2 |
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| 3UTR TCA 90 bp | CATAAGGAACTAACGGAATCATGCAGAGACTCCTTTGAGGAGTGTTaGGTGAGTCTTCCTCATCCTCTTAAATACACTGTAACAGAAATT | + |
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Preference number: 1 (lower is better) Translates to: HKELTESCRDSFEEC*VSLPHPLKYTVTEI Trigger: AATTTCTGTTACAGTGTATTTAAGAGGATGAGGAAGACTCACTCAACACTCCTCAAAGGAGTCTCTGCATGATTCCGTTAGTTCCTTATG 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000059250.8 |
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| 3UTR CCA 90 bp | AGCTTAGATTTGCTTCCATCAGGCCTCTTAAACCAAACTTCATCATaGTTAATTGTTGTAATTACAGCACTTGTGGGACACTCATCTTTT | + |
|
Preference number: 1 (lower is better) Translates to: SLDLLPSGLLNQTSS*LIVVITALVGHSSF Trigger: AAAAGATGAGTGTCCCACAAGTGCTGTAATTACAACAATTAACCATGATGAAGTTTGGTTTAAGAGGCCTGATGGAAGCAAATCTAAGCT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000219419.2 |
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| 3UTR-3UTR CCA 90 bp | GTTGGCACGGGACCTGCGAGGCAAATAAACGCGATGGTCATGATTAGAGTTTATGTACAAACACAAGAGTaGCAGCGGAGGCGGGGATTT | + |
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Preference number: 2 (lower is better) Translates to: VGTGPARQINAMVMIRVYVQTQE*QRRRGF Trigger: AAATCCCCGCCTCCGCTGCCACTCTTGTGTTTGTAC...ATAAACTCTAATCATGACCATCGCGTTTATTTGCCTCGCAGGTCCCGTGCCAAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000059250.8 |
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| 3UTR-3UTR GCA 90 bp | TCTGCACAGCCGCTAAGGGTGATCAGAAACAGAACAGAGCAGCACAATGTTGCTACACCAAATATGATCTaGAAAAGAGGTCACCGCCAT | + |
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Preference number: 2 (lower is better) Translates to: SAQPLRVIRNRTEQHNVATPNMI*KRGHRH Trigger: ATGGCGGTGACCTCTTTTGCAGATCATATTTGGTGT...AGCAACATTGTGCTGCTCTGTTCTGTTTCTGATCACCCTTAGCGGCTGTGCAGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000059250.8 |
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| 3UTR-3UTR CCA 90 bp | ACAGTCTGCACAGCCGCTAAGGGTGATCAGAAACAGAACAGAGCAGCACAATGTTTCTCTTGGCTTCCATaGCACATTACACTTGGTAAC | + |
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Preference number: 2 (lower is better) Translates to: TVCTAAKGDQKQNRAAQCFSWLP*HITLGN Trigger: GTTACCAAGTGTAATGTGCCATGGAAGCCAAGAGAA...ACATTGTGCTGCTCTGTTCTGTTTCTGATCACCCTTAGCGGCTGTGCAGACTGT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000059250.8 ENSMUST00000219419.2 |
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| 3UTR-3UTR CCA 90 bp | GTTGGCACGGGACCTGCGAGGCAAATAAACGCGATGGTCATGATTAGAGTTTATTTCTCTTGGCTTCCATaGCACATTACACTTGGTAAC | + |
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Preference number: 2 (lower is better) Translates to: VGTGPARQINAMVMIRVYFSWLP*HITLGN Trigger: GTTACCAAGTGTAATGTGCCATGGAAGCCAAGAGAA...ATAAACTCTAATCATGACCATCGCGTTTATTTGCCTCGCAGGTCCCGTGCCAAC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000059250.8 ENSMUST00000219419.2 |
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| 3UTR-3UTR TCA 90 bp | CAGTCTGCACAGCCGCTAAGGGTGATCAGAAACAGAACAGAGCAGCACAATGTTAATAAACACCAAATATaGTCTGCAAAAGAGGTCACC | + |
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Preference number: 2 (lower is better) Translates to: QSAQPLRVIRNRTEQHNVNKHQI*SAKEVT Trigger: GGTGACCTCTTTTGCAGATCATATTTGGTGTTTATT...AACATTGTGCTGCTCTGTTCTGTTTCTGATCACCCTTAGCGGCTGTGCAGACTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000059250.8 |
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| 3UTR-3UTR CCA 90 bp | GAACTTCGAAAGTCAGATGGTTACAATTTGGCAACTGTGGAGTATACCTGCAGGCTGAGTGCATTCTCTTaGCTTCCATGGCACATTACA | + |
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Preference number: 2 (lower is better) Translates to: ELRKSDGYNLATVEYTCRLSAFS*LPWHIT Trigger: TGTAATGTGCCATGGAAGCCAAGAGAATGCACTCAG...CCTGCAGGTATACTCCACAGTTGCCAAATTGTAACCATCTGACTTTCGAAGTTC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000059250.8 ENSMUST00000219419.2 |
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| 3UTR-3UTR CCA 90 bp | GTTGGCACGGGACCTGCGAGGCAAATAAACGCGATGGTCATGATTAGAGTTTATAATGACTTACTAATGTaGGGTCTACTTGGAGTACTA | + |
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Preference number: 2 (lower is better) Translates to: VGTGPARQINAMVMIRVYNDLLM*GLLGVL Trigger: TAGTACTCCAAGTAGACCCCACATTAGTAAGTCATT...ATAAACTCTAATCATGACCATCGCGTTTATTTGCCTCGCAGGTCCCGTGCCAAC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000059250.8 ENSMUST00000219419.2 |
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| 3UTR-3UTR TCA 90 bp | CTTCCATGGCACATTACACTTGGTAACACTAACAAGGTAGATGTGGGGAACACTAAATTATTAAGCTGCTaGGTGCATTCTCTTGGCTTC | + |
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Preference number: 2 (lower is better) Translates to: LPWHITLGNTNKVDVGNTKLLSC*VHSLGF Trigger: GAAGCCAAGAGAATGCACTCAGCAGCTTAATAATTT...AGTGTTCCCCACATCTACCTTGTTAGTGTTACCAAGTGTAATGTGCCATGGAAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000059250.8 ENSMUST00000219419.2 |
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| 3UTR-3UTR TCA 90 bp | GAACTTCGAAAGTCAGATGGTTACAATTTGGCAACTGTGGAGTATACCTGCAGGCAACATGGTCACACTTaGCACACTGCTACTAATAAA | + |
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Preference number: 2 (lower is better) Translates to: ELRKSDGYNLATVEYTCRQHGHT*HTATNK Trigger: TTTATTAGTAGCAGTGTGTCAAGTGTGACCATGTTG...CCTGCAGGTATACTCCACAGTTGCCAAATTGTAACCATCTGACTTTCGAAGTTC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000059250.8 |
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| 3UTR-3UTR CCA 90 bp | ACAGAGCAGCACAATGTTGCTGATACTGAACTTCGAAAGTCAGATGGTTACAATCTGAGTGCATTCTCTTaGCTTCCATGGCACATTACA | + |
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Preference number: 2 (lower is better) Translates to: TEQHNVADTELRKSDGYNLSAFS*LPWHIT Trigger: TGTAATGTGCCATGGAAGCCAAGAGAATGCACTCAG...ATTGTAACCATCTGACTTTCGAAGTTCAGTATCAGCAACATTGTGCTGCTCTGT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000059250.8 ENSMUST00000219419.2 |
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| 3UTR-3UTR TCA 90 bp | TCTCTTAATGACTTACTAATGTGGGGTCTACTTGGAGTACTACCTAGAAGACACAAATTATTAAGCTGCTaGGTGCATTCTCTTGGCTTC | + |
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Preference number: 2 (lower is better) Translates to: SLNDLLMWGLLGVLPRRHKLLSC*VHSLGF Trigger: GAAGCCAAGAGAATGCACTCAGCAGCTTAATAATTT...GTGTCTTCTAGGTAGTACTCCAAGTAGACCCCACATTAGTAAGTCATTAAGAGA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000059250.8 ENSMUST00000219419.2 |
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| 3UTR GCA 72 bp | TTTGGCTGTACCCTGCGTACACACTGTAGCCCACTGTaGCTCCGGGCTGAGGGCTCCGGTTTCCTGCACAGT | + |
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Preference number: 3 (lower is better) Translates to: FGCTLRTHCSPL*LRAEGSGFLHS Trigger: ACTGTGCAGGAAACCGGAGCCCTCAGCCCGGAGGCACAGTGGGCTACAGTGTGTACGCAGGGTACAGCCAAA 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000059250.8 |
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| 3UTR GCA 72 bp | GCCCACTGTGCCTCCGGGCTGAGGGCTCCGGTTTCCTaGACAGTTCCAGAGGCTTCCAAGTTCATTCTGAAT | + |
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Preference number: 3 (lower is better) Translates to: AHCASGLRAPVS*TVPEASKFILN Trigger: ATTCAGAATGAACTTGGAAGCCTCTGGAACTGTGCAGGAAACCGGAGCCCTCAGCCCGGAGGCACAGTGGGC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000059250.8 |
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| 3UTR CCA 72 bp | TTCATAGGAAGTCTTCCATCTGTACAAACACAAGAGTaGCAGCGGAGGCGGGGATTTAAAACTGCAGGCGAC | + |
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Preference number: 3 (lower is better) Translates to: FIGSLPSVQTQE*QRRRGFKTAGD Trigger: GTCGCCTGCAGTTTTAAATCCCCGCCTCCGCTGCCACTCTTGTGTTTGTACAGATGGAAGACTTCCTATGAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000059250.8 |
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| 3UTR GCA 72 bp | ATAAGCACTGCCAAATGCTACTGGATTGGGACAGTCTaGACAGCCGCTAAGGGTGATCAGAAACAGAACAGA | + |
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Preference number: 3 (lower is better) Translates to: ISTAKCYWIGTV*TAAKGDQKQNR Trigger: TCTGTTCTGTTTCTGATCACCCTTAGCGGCTGTGCAGACTGTCCCAATCCAGTAGCATTTGGCAGTGCTTAT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000059250.8 ENSMUST00000219419.2 |
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| 3UTR-3UTR CAA 90 bp | CTTCCATGGCACATTACACTTGGTAACACTAACAAGGTAGATGTGGGGAACACTGCTGAGTGCATTCTCTaGGCTTCCATGGCACATTAC | + |
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Preference number: 3 (lower is better) Translates to: LPWHITLGNTNKVDVGNTAECIL*ASMAHY Trigger: GTAATGTGCCATGGAAGCCAAGAGAATGCACTCAGC...AGTGTTCCCCACATCTACCTTGTTAGTGTTACCAAGTGTAATGTGCCATGGAAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000059250.8 ENSMUST00000219419.2 |
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| 3UTR CCA 72 bp | AACACTGAGAAAGAAATACATACCAAACAGACCTGTTaGCACGGGACCTGCGAGGCAAATAAACGCGATGGT | + |
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Preference number: 3 (lower is better) Translates to: NTEKEIHTKQTC*HGTCEANKRDG Trigger: ACCATCGCGTTTATTTGCCTCGCAGGTCCCGTGCCAACAGGTCTGTTTGGTATGTATTTCTTTCTCAGTGTT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000059250.8 |
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| 3UTR CCA 72 bp | ATTCACCATCGTAATACAGTCTTCCCTCTTCCGATCTaGCACTGTGCAGATGTTTCTCCAGTTTCACAGGTG | + |
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Preference number: 3 (lower is better) Translates to: IHHRNTVFPLPI*HCADVSPVSQV Trigger: CACCTGTGAAACTGGAGAAACATCTGCACAGTGCCAGATCGGAAGAGGGAAGACTGTATTACGATGGTGAAT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000219419.2 |
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| 3UTR TCA 72 bp | TTTCCTGCACAGTTCCAGAGGCTTCCAAGTTCATTCTaGATATGGCTAAGGGAAGGGAGGCCAACATTTTCT | + |
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Preference number: 3 (lower is better) Translates to: FPAQFQRLPSSF*IWLREGRPTFS Trigger: AGAAAATGTTGGCCTCCCTTCCCTTAGCCATATTCAGAATGAACTTGGAAGCCTCTGGAACTGTGCAGGAAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000059250.8 |
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| 3UTR TCA 72 bp | CGGAATCATGCAGAGACTCCTTTGAGGAGTGTTGAGTaGGTCTTCCTCATCCTCTTAAATACACAAACAGAC | + |
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Preference number: 3 (lower is better) Translates to: RNHAETPLRSVE*VFLILLNTQTD Trigger: GTCTGTTTGTGTATTTAAGAGGATGAGGAAGACTCACTCAACACTCCTCAAAGGAGTCTCTGCATGATTCCG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000219419.2 |
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| 3UTR CCA 72 bp | AACTTCGAAAGTCAGATGGTTACAATTTGGCAACTGTaGAGTATACCTGCAGGGAATGTCTGCAGAGGTGAA | + |
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Preference number: 3 (lower is better) Translates to: NFESQMVTIWQL*SIPAGNVCRGE Trigger: TTCACCTCTGCAGACATTCCCTGCAGGTATACTCCACAGTTGCCAAATTGTAACCATCTGACTTTCGAAGTT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000059250.8 ENSMUST00000219419.2 |
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| 3UTR TCA 72 bp | ACAGTCTCTCATGACTGGATGAAATTATTAAGCTGCTaGGTGCATTCTCTTGGCTTCCATGGCACATTACAC | + |
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Preference number: 3 (lower is better) Translates to: TVSHDWMKLLSC*VHSLGFHGTLH Trigger: GTGTAATGTGCCATGGAAGCCAAGAGAATGCACTCAGCAGCTTAATAATTTCATCCAGTCATGAGAGACTGT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000059250.8 ENSMUST00000219419.2 |
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| 3UTR-3UTR CAA 90 bp | ACTATTTCTCTTAATGACTTACTAATGTGGGGTCTACTTGGAGTACTACCTAGAGCTGAGTGCATTCTCTaGGCTTCCATGGCACATTAC | + |
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Preference number: 3 (lower is better) Translates to: TISLNDLLMWGLLGVLPRAECIL*ASMAHY Trigger: GTAATGTGCCATGGAAGCCAAGAGAATGCACTCAGC...TCTAGGTAGTACTCCAAGTAGACCCCACATTAGTAAGTCATTAAGAGAAATAGT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000059250.8 ENSMUST00000219419.2 |
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| 3UTR TCA 72 bp | CTACTTGGAGTACTACCTAGAAGACACAGTCTCTCATaGCTGGATGAAATTATTAAGCTGCTGAGTGCATTC | + |
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Preference number: 3 (lower is better) Translates to: LLGVLPRRHSLS*LDEIIKLLSAF Trigger: GAATGCACTCAGCAGCTTAATAATTTCATCCAGTCATGAGAGACTGTGTCTTCTAGGTAGTACTCCAAGTAG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000059250.8 ENSMUST00000219419.2 |
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| 3UTR CCA 72 bp | TATATATATATATTTATAAGCACTGCCAAATGCTACTaGATTGGGACAGTCTGCACAGCCGCTAAGGGTGAT | + |
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Preference number: 3 (lower is better) Translates to: YIYIFISTAKCY*IGTVCTAAKGD Trigger: ATCACCCTTAGCGGCTGTGCAGACTGTCCCAATCCAGTAGCATTTGGCAGTGCTTATAAATATATATATATA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000059250.8 ENSMUST00000219419.2 |
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| 3UTR GCA 72 bp | ATCATATATATATATATATTTATAAGCACTGCCAAATaGTACTGGATTGGGACAGTCTGCACAGCCGCTAAG | + |
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Preference number: 3 (lower is better) Translates to: IIYIYIFISTAK*YWIGTVCTAAK Trigger: CTTAGCGGCTGTGCAGACTGTCCCAATCCAGTAGCATTTGGCAGTGCTTATAAATATATATATATATATGAT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000059250.8 ENSMUST00000219419.2 |
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| 3UTR GCA 72 bp | ATCAAACATCATATATATATATATATTTATAAGCACTaGCAAATGCTACTGGATTGGGACAGTCTGCACAGC | + |
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Preference number: 3 (lower is better) Translates to: IKHHIYIYIYKH*QMLLDWDSLHS Trigger: GCTGTGCAGACTGTCCCAATCCAGTAGCATTTGGCAGTGCTTATAAATATATATATATATATGATGTTTGAT 35% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000059250.8 ENSMUST00000219419.2 |
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| CDS-3UTR TCA 90 bp | ATGATCTGCAAAAGAGGTCACCGCCATCCAGGAAGAAGAGAAGGAAAAGCAGTCCTTCCTCTTTTTCCGTaGCTGAAGCTCGTCGTTCCA | + |
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Preference number: 4 (lower is better) Translates to: MICKRGHRHPGRREGKAVLPLFP*LKLVVP Trigger: TGGAACGACGAGCTTCAGTCACGGAAAAAGAGGAAG...GACTGCTTTTCCTTCTCTTCTTCCTGGATGGCGGTGACCTCTTTTGCAGATCAT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000059250.8 |
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| CDS-3UTR TCA 90 bp | CAACTGTGGAGTATACCTGCAGGGAATGTCTGCAGAGGTGAAGTCATAAGGAACCTTCCTCTTTTTCCGTaGCTGAAGCTCGTCGTTCCA | + |
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Preference number: 4 (lower is better) Translates to: QLWSIPAGNVCRGEVIRNLPLFP*LKLVVP Trigger: TGGAACGACGAGCTTCAGTCACGGAAAAAGAGGAAG...GTTCCTTATGACTTCACCTCTGCAGACATTCCCTGCAGGTATACTCCACAGTTG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000059250.8 ENSMUST00000219419.2 |
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| CDS-3UTR GCA 90 bp | ACAATTTGGCAACTGTGGAGTATACCTGCAGGGAATGTCTGCAGAGGTGAAGTCGTAATGTCGATGCTGTaGCTGTCCTCCTCAAGCCTT | + |
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Preference number: 4 (lower is better) Translates to: TIWQLWSIPAGNVCRGEVVMSML*LSSSSL Trigger: AAGGCTTGAGGAGGACAGGCACAGCATCGACATTAC...GACTTCACCTCTGCAGACATTCCCTGCAGGTATACTCCACAGTTGCCAAATTGT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000059250.8 |
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| CDS-3UTR CCA 90 bp | ACAGTCTGCACAGCCGCTAAGGGTGATCAGAAACAGAACAGAGCAGCACAATGTTGTTTTAACTCGGTGTaGACCCAGTGTAGCCATTGC | + |
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Preference number: 4 (lower is better) Translates to: TVCTAAKGDQKQNRAAQCCFNSV*TQCSHC Trigger: GCAATGGCTACACTGGGTCCACACCGAGTTAAAACA...ACATTGTGCTGCTCTGTTCTGTTTCTGATCACCCTTAGCGGCTGTGCAGACTGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000059250.8 |
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| 3UTR CAA 72 bp | GAAATTAAAGTGCATGAGACCAGCAGAGCACTTCATTaGGCTGTACCCTGCGTACACACTGTAGCCCACTGT | + |
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Preference number: 4 (lower is better) Translates to: EIKVHETSRALH*AVPCVHTVAHC Trigger: ACAGTGGGCTACAGTGTGTACGCAGGGTACAGCCAAATGAAGTGCTCTGCTGGTCTCATGCACTTTAATTTC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000059250.8 |
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| CDS-3UTR CCA 90 bp | TCTGCACAGCCGCTAAGGGTGATCAGAAACAGAACAGAGCAGCACAATGTTGCTTGCTGTCGAGAAGCCTaGATTTCACATTCGTACTTG | + |
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Preference number: 4 (lower is better) Translates to: SAQPLRVIRNRTEQHNVACCREA*ISHSYL Trigger: CAAGTACGAATGTGAAATCCAGGCTTCTCGACAGCA...AGCAACATTGTGCTGCTCTGTTCTGTTTCTGATCACCCTTAGCGGCTGTGCAGA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000059250.8 ENSMUST00000219419.2 |
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| CDS-3UTR CCA 90 bp | TCTGCACAGCCGCTAAGGGTGATCAGAAACAGAACAGAGCAGCACAATGTTGCTCTCCAGTTTCACAGGTaGTTCTGTTTTAACTCGGTG | + |
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Preference number: 4 (lower is better) Translates to: SAQPLRVIRNRTEQHNVALQFHR*FCFNSV Trigger: CACCGAGTTAAAACAGAACCACCTGTGAAACTGGAG...AGCAACATTGTGCTGCTCTGTTCTGTTTCTGATCACCCTTAGCGGCTGTGCAGA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000059250.8 |
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| CDS-3UTR GCA 90 bp | ACAATTTGGCAACTGTGGAGTATACCTGCAGGGAATGTCTGCAGAGGTGAAGTCTTGAGGTCTGTAAACTaGTTCTCCAGGTTGGACATC | + |
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Preference number: 4 (lower is better) Translates to: TIWQLWSIPAGNVCRGEVLRSVN*FSRLDI Trigger: GATGTCCAACCTGGAGAAGCAGTTTACAGACCTCAA...GACTTCACCTCTGCAGACATTCCCTGCAGGTATACTCCACAGTTGCCAAATTGT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000059250.8 ENSMUST00000219419.2 |
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| CDS-3UTR GCA 90 bp | TCTGCACAGCCGCTAAGGGTGATCAGAAACAGAACAGAGCAGCACAATGTTGCTTTTTCACTCTCACAATaGTGTCGAGAAGCCTGGATT | + |
|
Preference number: 4 (lower is better) Translates to: SAQPLRVIRNRTEQHNVAFSLSQ*CREAWI Trigger: AATCCAGGCTTCTCGACAGCATTGTGAGAGTGAAAA...AGCAACATTGTGCTGCTCTGTTCTGTTTCTGATCACCCTTAGCGGCTGTGCAGA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000059250.8 |
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| CDS-3UTR CCA 90 bp | TCTGCACAGCCGCTAAGGGTGATCAGAAACAGAACAGAGCAGCACAATGTTGCTTGGTTCCAAATACTCTaGTGCTTTTCCAGCTATGAC | + |
|
Preference number: 4 (lower is better) Translates to: SAQPLRVIRNRTEQHNVAWFQIL*CFSSYD Trigger: GTCATAGCTGGAAAAGCACCAGAGTATTTGGAACCA...AGCAACATTGTGCTGCTCTGTTCTGTTTCTGATCACCCTTAGCGGCTGTGCAGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000059250.8 ENSMUST00000219419.2 |
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| CDS-3UTR TCA 90 bp | AGGGTGATCAGAAACAGAACAGAGCAGCACAATGTTGCTGATACTGAACTTCGATTCATCATCCATTTCTaGACTGTCCCCATCCTCCGA | + |
|
Preference number: 4 (lower is better) Translates to: RVIRNRTEQHNVADTELRFIIHF*TVPILR Trigger: TCGGAGGATGGGGACAGTTCAGAAATGGATGATGAA...TCGAAGTTCAGTATCAGCAACATTGTGCTGCTCTGTTCTGTTTCTGATCACCCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000059250.8 ENSMUST00000219419.2 |
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| CDS-3UTR TCA 90 bp | CTTCCATGGCACATTACACTTGGTAACACTAACAAGGTAGATGTGGGGAACACTTTCATCATCCATTTCTaGACTGTCCCCATCCTCCGA | + |
|
Preference number: 4 (lower is better) Translates to: LPWHITLGNTNKVDVGNTFIIHF*TVPILR Trigger: TCGGAGGATGGGGACAGTTCAGAAATGGATGATGAA...AGTGTTCCCCACATCTACCTTGTTAGTGTTACCAAGTGTAATGTGCCATGGAAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000059250.8 ENSMUST00000219419.2 |
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| CDS-3UTR GCA 90 bp | CTTCCATGGCACATTACACTTGGTAACACTAACAAGGTAGATGTGGGGAACACTGACTTCTTGGAGTTTTaGATCCACCTGACTCAACCG | + |
|
Preference number: 4 (lower is better) Translates to: LPWHITLGNTNKVDVGNTDFLEF*IHLTQP Trigger: CGGTTGAGTCAGGTGGATGCAAAACTCCAAGAAGTC...AGTGTTCCCCACATCTACCTTGTTAGTGTTACCAAGTGTAATGTGCCATGGAAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000059250.8 ENSMUST00000219419.2 |
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| CDS-3UTR GCA 90 bp | ACAGTCTGCACAGCCGCTAAGGGTGATCAGAAACAGAACAGAGCAGCACAATGTTTCCAAATACTCTGGTaGTTTTCCAGCTATGACTTC | + |
|
Preference number: 4 (lower is better) Translates to: TVCTAAKGDQKQNRAAQCFQILW*FSSYDF Trigger: GAAGTCATAGCTGGAAAAGCACCAGAGTATTTGGAA...ACATTGTGCTGCTCTGTTCTGTTTCTGATCACCCTTAGCGGCTGTGCAGACTGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000059250.8 ENSMUST00000219419.2 |
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| CDS-3UTR CCA 90 bp | TATGATCTGCAAAAGAGGTCACCGCCATCCAGGAAGAAGAGAAGGAAAAGCAGTTGCTGTCGAGAAGCCTaGATTTCACATTCGTACTTG | + |
|
Preference number: 4 (lower is better) Translates to: YDLQKRSPPSRKKRRKSSCCREA*ISHSYL Trigger: CAAGTACGAATGTGAAATCCAGGCTTCTCGACAGCA...ACTGCTTTTCCTTCTCTTCTTCCTGGATGGCGGTGACCTCTTTTGCAGATCATA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000059250.8 |
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| CDS-3UTR CCA 90 bp | CTTCCATGGCACATTACACTTGGTAACACTAACAAGGTAGATGTGGGGAACACTTTCCCTCTTCCGATCTaGCACTGTGCAGATGTTTCT | + |
|
Preference number: 4 (lower is better) Translates to: LPWHITLGNTNKVDVGNTFPLPI*HCADVS Trigger: AGAAACATCTGCACAGTGCCAGATCGGAAGAGGGAA...AGTGTTCCCCACATCTACCTTGTTAGTGTTACCAAGTGTAATGTGCCATGGAAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000059250.8 |
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| CDS-3UTR GCA 90 bp | AGGGTGATCAGAAACAGAACAGAGCAGCACAATGTTGCTGATACTGAACTTCGATTGAGGTCTGTAAACTaGTTCTCCAGGTTGGACATC | + |
|
Preference number: 4 (lower is better) Translates to: RVIRNRTEQHNVADTELRLRSVN*FSRLDI Trigger: GATGTCCAACCTGGAGAAGCAGTTTACAGACCTCAA...TCGAAGTTCAGTATCAGCAACATTGTGCTGCTCTGTTCTGTTTCTGATCACCCT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000059250.8 ENSMUST00000219419.2 |
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| CDS-3UTR GCA 90 bp | ACTATTTCTCTTAATGACTTACTAATGTGGGGTCTACTTGGAGTACTACCTAGAGACTTCTTGGAGTTTTaGATCCACCTGACTCAACCG | + |
|
Preference number: 4 (lower is better) Translates to: TISLNDLLMWGLLGVLPRDFLEF*IHLTQP Trigger: CGGTTGAGTCAGGTGGATGCAAAACTCCAAGAAGTC...TCTAGGTAGTACTCCAAGTAGACCCCACATTAGTAAGTCATTAAGAGAAATAGT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000059250.8 ENSMUST00000219419.2 |
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| CDS-3UTR CCA 90 bp | TCTCTTAATGACTTACTAATGTGGGGTCTACTTGGAGTACTACCTAGAAGACACACTGCTTCTCCAGGTTaGACATCTCATCTAAACACT | + |
|
Preference number: 4 (lower is better) Translates to: SLNDLLMWGLLGVLPRRHTASPG*TSHLNT Trigger: AGTGTTTAGATGAGATGTCCAACCTGGAGAAGCAGT...GTGTCTTCTAGGTAGTACTCCAAGTAGACCCCACATTAGTAAGTCATTAAGAGA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000059250.8 ENSMUST00000219419.2 |
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| CDS-3UTR CCA 90 bp | CAAGGTAGATGTGGGGAACACTTAGAGCGTGATTACGAATGTTTAATTGAGTATACTGCTTCTCCAGGTTaGACATCTCATCTAAACACT | + |
|
Preference number: 4 (lower is better) Translates to: QGRCGEHLERDYECLIEYTASPG*TSHLNT Trigger: AGTGTTTAGATGAGATGTCCAACCTGGAGAAGCAGT...ATACTCAATTAAACATTCGTAATCACGCTCTAAGTGTTCCCCACATCTACCTTG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000219419.2 |
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| CDS-3UTR CCA 90 bp | CAAGGTAGATGTGGGGAACACTTAGAGCGTGATTACGAATGTTTAATTGAGTATTGGTTCCAAATACTCTaGTGCTTTTCCAGCTATGAC | + |
|
Preference number: 4 (lower is better) Translates to: QGRCGEHLERDYECLIEYWFQIL*CFSSYD Trigger: GTCATAGCTGGAAAAGCACCAGAGTATTTGGAACCA...ATACTCAATTAAACATTCGTAATCACGCTCTAAGTGTTCCCCACATCTACCTTG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000219419.2 |
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| CDS-3UTR CCA 90 bp | ACAGAGCAGCACAATGTTGCTGATACTGAACTTCGAAAGTCAGATGGTTACAATTGTTTTCTTGTAAGGTaGCCAGTGGTTCCAAATACT | + |
|
Preference number: 4 (lower is better) Translates to: TEQHNVADTELRKSDGYNCFLVR*PVVPNT Trigger: AGTATTTGGAACCACTGGCCACCTTACAAGAAAACA...ATTGTAACCATCTGACTTTCGAAGTTCAGTATCAGCAACATTGTGCTGCTCTGT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000059250.8 ENSMUST00000219419.2 |
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| CDS-3UTR CCA 90 bp | TCTCTTAATGACTTACTAATGTGGGGTCTACTTGGAGTACTACCTAGAAGACACTCCTCAAGCTCACTCTaGACTGTATCATATAACAAA | + |
|
Preference number: 4 (lower is better) Translates to: SLNDLLMWGLLGVLPRRHSSSSL*TVSYNK Trigger: TTTGTTATATGATACAGTCCAGAGTGAGCTTGAGGA...GTGTCTTCTAGGTAGTACTCCAAGTAGACCCCACATTAGTAAGTCATTAAGAGA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000059250.8 |
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| CDS GCA 90 bp | CATCCTCCGAGACCGACGAGCTCTCGGTGTCCTCGTCTTCGGAACTaGTCCCCTCGTTCTCCGCGTAGTCCACCTCCATCTCATCGTGAT | + |
|
Preference number: 5 (lower is better) Translates to: HPPRPTSSRCPRLRN*SPRSPRSPPPSHRD Trigger: ATCACGATGAGATGGAGGTGGACTACGCGGAGAACGAGGGGAGCAGTTCCGAAGACGAGGACACCGAGAGCTCGTCGGTCTCGGAGGATG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000059250.8 ENSMUST00000219419.2 |
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| CDS TCA 90 bp | TTCTTCTTGTCGGGGCTGAACGGATCCTTCCTCTTTTTCCGTGACTaGAGCTCGTCGTTCCACAGCTCTGAGGTAATGTCGATGCTGTGC | + |
|
Preference number: 5 (lower is better) Translates to: FFLSGLNGSFLFFRD*SSSFHSSEVMSMLC Trigger: GCACAGCATCGACATTACCTCAGAGCTGTGGAACGACGAGCTTCAGTCACGGAAAAAGAGGAAGGATCCGTTCAGCCCCGACAAGAAGAA 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000059250.8 |
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| CDS TCA 90 bp | TTCTTCTTGTCGGGGCTGAACGGATCCTTCCTCTTTTTCCGTGACTaGAGCTCGTCGTTCCACAGCTCTCACAATGCTGTCGAGAAGCCT | + |
|
Preference number: 5 (lower is better) Translates to: FFLSGLNGSFLFFRD*SSSFHSSHNAVEKP Trigger: AGGCTTCTCGACAGCATTGTGAGAGCTGTGGAACGACGAGCTTCAGTCACGGAAAAAGAGGAAGGATCCGTTCAGCCCCGACAAGAAGAA 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000219419.2 |
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| CDS GCA 90 bp | CACAGGTGGTTCTGTTTTAACTCGGTGTGGACCCAGTGTAGCCATTaGCTTCCTAATTGTCGTCCAGTCCTCAAGAATGTCGAGATCCTG | + |
|
Preference number: 5 (lower is better) Translates to: HRWFCFNSVWTQCSH*LPNCRPVLKNVEIL Trigger: CAGGATCTCGACATTCTTGAGGACTGGACGACAATTAGGAAGGCAATGGCTACACTGGGTCCACACCGAGTTAAAACAGAACCACCTGTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000059250.8 |
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| CDS-3UTR CAA 90 bp | ACAGTCTGCACAGCCGCTAAGGGTGATCAGAAACAGAACAGAGCAGCACAATGTTCCAGCTATGACTTCTaGGAGTTTTGCATCCACCTG | + |
|
Preference number: 5 (lower is better) Translates to: TVCTAAKGDQKQNRAAQCSSYDF*EFCIHL Trigger: CAGGTGGATGCAAAACTCCAAGAAGTCATAGCTGGA...ACATTGTGCTGCTCTGTTCTGTTTCTGATCACCCTTAGCGGCTGTGCAGACTGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000059250.8 ENSMUST00000219419.2 |
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| CDS TCA 90 bp | CTCAAGAATGTCGAGATCCTGCAGCATATAAACTATATATGGACCTaGGACAACGACCGGCTTCTTCTTGTCGGGGCTGAACGGATCCTT | + |
|
Preference number: 5 (lower is better) Translates to: LKNVEILQHINYIWT*DNDRLLLVGAERIL Trigger: AAGGATCCGTTCAGCCCCGACAAGAAGAAGCCGGTCGTTGTCTCAGGTCCATATATAGTTTATATGCTGCAGGATCTCGACATTCTTGAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000059250.8 |
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| CDS-3UTR CAA 90 bp | GAACTTCGAAAGTCAGATGGTTACAATTTGGCAACTGTGGAGTATACCTGCAGGTCCAGCTATGACTTCTaGGAGTTTTGCATCCACCTG | + |
|
Preference number: 5 (lower is better) Translates to: ELRKSDGYNLATVEYTCRSSYDF*EFCIHL Trigger: CAGGTGGATGCAAAACTCCAAGAAGTCATAGCTGGA...CCTGCAGGTATACTCCACAGTTGCCAAATTGTAACCATCTGACTTTCGAAGTTC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000059250.8 ENSMUST00000219419.2 |
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| CDS CCA 90 bp | GTATATACCATTCACCATCGTAATACAGTCTTCCCTCTTCCGATCTaGCACTGTGCAGATGTTTCTCCAGTTTCACAGGTGGTTCTGTTT | + |
|
Preference number: 5 (lower is better) Translates to: VYTIHHRNTVFPLPI*HCADVSPVSQVVLF Trigger: AAACAGAACCACCTGTGAAACTGGAGAAACATCTGCACAGTGCCAGATCGGAAGAGGGAAGACTGTATTACGATGGTGAATGGTATATAC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000059250.8 |
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| CDS-3UTR CAA 90 bp | TATGATCTGCAAAAGAGGTCACCGCCATCCAGGAAGAAGAGAAGGAAAAGCAGTAGATTCCTGCTACCTTaGTGCGAATCTGCATGTTTT | + |
|
Preference number: 5 (lower is better) Translates to: YDLQKRSPPSRKKRRKSSRFLLP*CESACF Trigger: AAAACATGCAGATTCGCACAAAGGTAGCAGGAATCT...ACTGCTTTTCCTTCTCTTCTTCCTGGATGGCGGTGACCTCTTTTGCAGATCATA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000059250.8 |
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| CDS-3UTR CAA 90 bp | ATTCACCATCGTAATACAGTCTTCCCTCTTCCGATCTGGCACTGTGCAGATGTTAGATTCCTGCTACCTTaGTGCGAATCTGCATGTTTT | + |
|
Preference number: 5 (lower is better) Translates to: IHHRNTVFPLPIWHCADVRFLLP*CESACF Trigger: AAAACATGCAGATTCGCACAAAGGTAGCAGGAATCT...AACATCTGCACAGTGCCAGATCGGAAGAGGGAAGACTGTATTACGATGGTGAAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000219419.2 |
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| CDS-3UTR CAA 90 bp | ATGATCTGCAAAAGAGGTCACCGCCATCCAGGAAGAAGAGAAGGAAAAGCAGTCATTTCACATTCGTACTaGTTCTTCACAGACTCTAAG | + |
|
Preference number: 5 (lower is better) Translates to: MICKRGHRHPGRREGKAVISHSY*FFTDSK Trigger: CTTAGAGTCTGTGAAGAACAAGTACGAATGTGAAAT...GACTGCTTTTCCTTCTCTTCTTCCTGGATGGCGGTGACCTCTTTTGCAGATCAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000059250.8 |
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| CDS-3UTR CAA 90 bp | ATACAGTCTTCCCTCTTCCGATCTGGCACTGTGCAGATGTTTCTCCAGTTTCACATTTCACATTCGTACTaGTTCTTCACAGACTCTAAG | + |
|
Preference number: 5 (lower is better) Translates to: IQSSLFRSGTVQMFLQFHISHSY*FFTDSK Trigger: CTTAGAGTCTGTGAAGAACAAGTACGAATGTGAAAT...GTGAAACTGGAGAAACATCTGCACAGTGCCAGATCGGAAGAGGGAAGACTGTAT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000219419.2 |
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| CDS-3UTR CAA 90 bp | AGGGTGATCAGAAACAGAACAGAGCAGCACAATGTTGCTGATACTGAACTTCGACCGCTCTTTATAAAGTaGATCTTTGAGGTCTGTAAA | + |
|
Preference number: 5 (lower is better) Translates to: RVIRNRTEQHNVADTELRPLFIK*IFEVCK Trigger: TTTACAGACCTCAAAGATCAACTTTATAAAGAGCGG...TCGAAGTTCAGTATCAGCAACATTGTGCTGCTCTGTTCTGTTTCTGATCACCCT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000059250.8 ENSMUST00000219419.2 |
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| CDS GCA 72 bp | AGACCGACGAGCTCTCGGTGTCCTCGTCTTCGGAACTaGTCCCCTCGTTCTCCGCGTAGTCCACCTCCATCT | + |
|
Preference number: 6 (lower is better) Translates to: RPTSSRCPRLRN*SPRSPRSPPPS Trigger: AGATGGAGGTGGACTACGCGGAGAACGAGGGGAGCAGTTCCGAAGACGAGGACACCGAGAGCTCGTCGGTCT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000059250.8 ENSMUST00000219419.2 |
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| CDS TCA 72 bp | TCGGGGCTGAACGGATCCTTCCTCTTTTTCCGTGACTaGAGCTCGTCGTTCCACAGCTCTGAGGTAATGTCG | + |
|
Preference number: 6 (lower is better) Translates to: SGLNGSFLFFRD*SSSFHSSEVMS Trigger: CGACATTACCTCAGAGCTGTGGAACGACGAGCTTCAGTCACGGAAAAAGAGGAAGGATCCGTTCAGCCCCGA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000059250.8 |
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| CDS CCA 72 bp | TCTGGCACTGTGCAGATGTTTCTCCAGTTTCACAGGTaGTTCTGTTTTAACTCGGTGTGGACCCAGTGTAGC | + |
|
Preference number: 6 (lower is better) Translates to: SGTVQMFLQFHR*FCFNSVWTQCS Trigger: GCTACACTGGGTCCACACCGAGTTAAAACAGAACCACCTGTGAAACTGGAGAAACATCTGCACAGTGCCAGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000059250.8 |
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| CDS CAA 72 bp | ACTATATATGGACCTGAGACAACGACCGGCTTCTTCTaGTCGGGGCTGAACGGATCCTTCCTCTTTTTCCGT | + |
|
Preference number: 6 (lower is better) Translates to: TIYGPETTTGFF*SGLNGSFLFFR Trigger: ACGGAAAAAGAGGAAGGATCCGTTCAGCCCCGACAAGAAGAAGCCGGTCGTTGTCTCAGGTCCATATATAGT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000059250.8 |
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| CDS TCA 72 bp | GTCGAGATCCTGCAGCATATAAACTATATATGGACCTaGGACAACGACCGGCTTCTTCTTGTCGGGGCTGAA | + |
|
Preference number: 6 (lower is better) Translates to: VEILQHINYIWT*DNDRLLLVGAE Trigger: TTCAGCCCCGACAAGAAGAAGCCGGTCGTTGTCTCAGGTCCATATATAGTTTATATGCTGCAGGATCTCGAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000059250.8 |
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| CDS GCA 72 bp | TTCTGTTTTAACTCGGTGTGGACCCAGTGTAGCCATTaGCTTCCTAATTGTCGTCCAGTCCTCAAGAATGTC | + |
|
Preference number: 6 (lower is better) Translates to: FCFNSVWTQCSH*LPNCRPVLKNV Trigger: GACATTCTTGAGGACTGGACGACAATTAGGAAGGCAATGGCTACACTGGGTCCACACCGAGTTAAAACAGAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000059250.8 |
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| CDS CAA 90 bp | GGCCAGTGGTTCCAAATACTCTGGTGCTTTTCCAGCTATGACTTCTaGGAGTTTTGCATCCACCTGACTCAACCGCTCTTTATAAAGTTG | + |
|
Preference number: 6 (lower is better) Translates to: GQWFQILWCFSSYDF*EFCIHLTQPLFIKL Trigger: CAACTTTATAAAGAGCGGTTGAGTCAGGTGGATGCAAAACTCCAAGAAGTCATAGCTGGAAAAGCACCAGAGTATTTGGAACCACTGGCC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000059250.8 ENSMUST00000219419.2 |
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| CDS CAA 72 bp | TTCCAAATACTCTGGTGCTTTTCCAGCTATGACTTCTaGGAGTTTTGCATCCACCTGACTCAACCGCTCTTT | + |
|
Preference number: 6 (lower is better) Translates to: FQILWCFSSYDF*EFCIHLTQPLF Trigger: AAAGAGCGGTTGAGTCAGGTGGATGCAAAACTCCAAGAAGTCATAGCTGGAAAAGCACCAGAGTATTTGGAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000059250.8 ENSMUST00000219419.2 |
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| CDS CAA 90 bp | TTCTTGGAGTTTTGCATCCACCTGACTCAACCGCTCTTTATAAAGTaGATCTTTGAGGTCTGTAAACTGCTTCTCCAGGTTGGACATCTC | + |
|
Preference number: 6 (lower is better) Translates to: FLEFCIHLTQPLFIK*IFEVCKLLLQVGHL Trigger: GAGATGTCCAACCTGGAGAAGCAGTTTACAGACCTCAAAGATCAACTTTATAAAGAGCGGTTGAGTCAGGTGGATGCAAAACTCCAAGAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000059250.8 ENSMUST00000219419.2 |
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| CDS CAA 72 bp | TTTTGCATCCACCTGACTCAACCGCTCTTTATAAAGTaGATCTTTGAGGTCTGTAAACTGCTTCTCCAGGTT | + |
|
Preference number: 6 (lower is better) Translates to: FCIHLTQPLFIK*IFEVCKLLLQV Trigger: AACCTGGAGAAGCAGTTTACAGACCTCAAAGATCAACTTTATAAAGAGCGGTTGAGTCAGGTGGATGCAAAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000059250.8 ENSMUST00000219419.2 |
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