Pregenerated sensors for BRK1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000033940

Ensembl transcript IDs: ENSMUST00000035725.7

Found 25 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
3UTR GCA 90 bp	CATTTTCTGGCAACCACACTGCAGGGCACAAGTCTCAGCCAGGACTaGCTCCACCTCTCACAGGTGGAGAGAAGGCCGACTGTTGACAGA	+
Preference number: 1 (lower is better) Translates to: HFLATTLQGTSLSQD*LHLSQVERRPTVDR Trigger: TCTGTCAACAGTCGGCCTTCTCTCCACCTGTGAGAGGTGGAGGCAGTCCTGGCTGAGACTTGTGCCCTGCAGTGTGGTTGCCAGAAAATG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035725.7
3UTR CCA 90 bp	AGCCGCCTAGGCTTTGAACCAGCTAGGGCTGCAGGTTTCTTCTGCTaGAGAGCACTCTTGCCCACCAGACTCTCAACAAGGAGACCCTCT	+
Preference number: 1 (lower is better) Translates to: SRLGFEPARAAGFFC*RALLPTRLSTRRPS Trigger: AGAGGGTCTCCTTGTTGAGAGTCTGGTGGGCAAGAGTGCTCTCCAGCAGAAGAAACCTGCAGCCCTAGCTGGTTCAAAGCCTAGGCGGCT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035725.7
3UTR TCA 90 bp	TGTAGAGGCCATGGGAGCTGTAGGGAAAGTCTGAGAGAAAGAGTTTaGGAGGTGGGGAGGACCTTAGAGTCCCAGCCTTTGCCTCTCAAC	+
Preference number: 1 (lower is better) Translates to: CRGHGSCRESLRERV*EVGRTLESQPLPLN Trigger: GTTGAGAGGCAAAGGCTGGGACTCTAAGGTCCTCCCCACCTCTCAAACTCTTTCTCTCAGACTTTCCCTACAGCTCCCATGGCCTCTACA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035725.7
3UTR-3UTR CCA 90 bp	GGGCACAAGTCTCAGCCAGGACTGCCTCCACCTCTCACAGGTGGAGAGAAGGCCTTCCAAGAGGTCCCCTaGACTGCTTGCTCCCCCATG	+
Preference number: 2 (lower is better) Translates to: GHKSQPGLPPPLTGGEKAFQEVP*TACSPM Trigger: CATGGGGGAGCAAGCAGTCCAGGGGACCTCTTGGAA...GGCCTTCTCTCCACCTGTGAGAGGTGGAGGCAGTCCTGGCTGAGACTTGTGCCC 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000035725.7
3UTR-3UTR CCA 90 bp	TCCCTTCAAGCCAACTGGGGGCCTGGCTTTGAGCTCCCAGAACAAGAAACTGGTGGAGCAGGAGGCTGCTaGGCCTTTCCCACACGGCAG	+
Preference number: 2 (lower is better) Translates to: SLQANWGPGFELPEQETGGAGGC*AFPTRQ Trigger: CTGCCGTGTGGGAAAGGCCCAGCAGCCTCCTGCTCC...ACCAGTTTCTTGTTCTGGGAGCTCAAAGCCAGGCCCCCAGTTGGCTTGAAGGGA 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000035725.7
3UTR-3UTR GCA 90 bp	CCCTTCAAGCCAACTGGGGGCCTGGCTTTGAGCTCCCAGAACAAGAAACTGGTGAGTCTCAGCCAGGACTaGCTCCACCTCTCACAGGTG	+
Preference number: 2 (lower is better) Translates to: PFKPTGGLALSSQNKKLVSLSQD*LHLSQV Trigger: CACCTGTGAGAGGTGGAGGCAGTCCTGGCTGAGACT...CACCAGTTTCTTGTTCTGGGAGCTCAAAGCCAGGCCCCCAGTTGGCTTGAAGGG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000035725.7
3UTR CAA 90 bp	GCCAGGACTGCCTCCACCTCTCACAGGTGGAGAGAAGGCCGACTGTaGACAGAAATCAGTGTAGAGGCCATGGGAGCTGTAGGGAAAGTC	+
Preference number: 2 (lower is better) Translates to: ARTASTSHRWREGRL*TEISVEAMGAVGKV Trigger: GACTTTCCCTACAGCTCCCATGGCCTCTACACTGATTTCTGTCAACAGTCGGCCTTCTCTCCACCTGTGAGAGGTGGAGGCAGTCCTGGC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035725.7
3UTR-3UTR CCA 90 bp	TCCCTTCAAGCCAACTGGGGGCCTGGCTTTGAGCTCCCAGAACAAGAAACTGGTTCCACCTCTCACAGGTaGAGAGAAGGCCGACTGTTG	+
Preference number: 2 (lower is better) Translates to: SLQANWGPGFELPEQETGSTSHR*REGRLL Trigger: CAACAGTCGGCCTTCTCTCCACCTGTGAGAGGTGGA...ACCAGTTTCTTGTTCTGGGAGCTCAAAGCCAGGCCCCCAGTTGGCTTGAAGGGA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000035725.7
3UTR-3UTR TCA 90 bp	TGCAGGGCACAAGTCTCAGCCAGGACTGCCTCCACCTCTCACAGGTGGAGAGAAGCTGTAGGGAAAGTCTaGGAGAAAGAGTTTGAGAGG	+
Preference number: 2 (lower is better) Translates to: CRAQVSARTASTSHRWREAVGKV*EKEFER Trigger: CCTCTCAAACTCTTTCTCTCAGACTTTCCCTACAGC...TTCTCTCCACCTGTGAGAGGTGGAGGCAGTCCTGGCTGAGACTTGTGCCCTGCA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035725.7
3UTR-3UTR CCA 90 bp	TCCCTTCAAGCCAACTGGGGGCCTGGCTTTGAGCTCCCAGAACAAGAAACTGGTAGCAACAACATTTTCTaGCAACCACACTGCAGGGCA	+
Preference number: 2 (lower is better) Translates to: SLQANWGPGFELPEQETGSNNIF*QPHCRA Trigger: TGCCCTGCAGTGTGGTTGCCAGAAAATGTTGTTGCT...ACCAGTTTCTTGTTCTGGGAGCTCAAAGCCAGGCCCCCAGTTGGCTTGAAGGGA 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000035725.7
3UTR-3UTR GCA 90 bp	GACTGCCTCCACCTCTCACAGGTGGAGAGAAGGCCGACTGTTGACAGAAATCAGAAGAAAAAGCCCTGTTaGTCTGTAAGGAGAGAGGAG	+
Preference number: 2 (lower is better) Translates to: DCLHLSQVERRPTVDRNQKKKPC*SVRREE Trigger: CTCCTCTCTCCTTACAGAGCAACAGGGCTTTTTCTT...CTGATTTCTGTCAACAGTCGGCCTTCTCTCCACCTGTGAGAGGTGGAGGCAGTC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000035725.7
3UTR-3UTR TCA 90 bp	GCCAACTGGGGGCCTGGCTTTGAGCTCCCAGAACAAGAAACTGGTGGGTTAGCAACACCTCAAACACATTaGCAAGTAGTTCCGAACAAT	+
Preference number: 2 (lower is better) Translates to: ANWGPGFELPEQETGGLATPQTH*QVVPNN Trigger: ATTGTTCGGAACTACTTGTCAATGTGTTTGAGGTGT...TGCTAACCCACCAGTTTCTTGTTCTGGGAGCTCAAAGCCAGGCCCCCAGTTGGC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000035725.7
3UTR-3UTR TCA 90 bp	CCCTTCAAGCCAACTGGGGGCCTGGCTTTGAGCTCCCAGAACAAGAAACTGGTGTCCGAACAATGTTACTaGAAAGGGAAAAAGCCTAAT	+
Preference number: 2 (lower is better) Translates to: PFKPTGGLALSSQNKKLVSEQCY*KGKKPN Trigger: ATTAGGCTTTTTCCCTTTTCAGTAACATTGTTCGGA...CACCAGTTTCTTGTTCTGGGAGCTCAAAGCCAGGCCCCCAGTTGGCTTGAAGGG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000035725.7
3UTR GCA 72 bp	GCAACCACACTGCAGGGCACAAGTCTCAGCCAGGACTaGCTCCACCTCTCACAGGTGGAGAGAAGGCCGACT	+
Preference number: 3 (lower is better) Translates to: ATTLQGTSLSQD*LHLSQVERRPT Trigger: AGTCGGCCTTCTCTCCACCTGTGAGAGGTGGAGGCAGTCCTGGCTGAGACTTGTGCCCTGCAGTGTGGTTGC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035725.7
3UTR GCA 72 bp	CTGTTGCTCTGTAAGGAGAGAGGAGGAGCAGGAGGCTaGTGGGCCTTTCCCACACGGCAGTGTTCTGTACAG	+
Preference number: 3 (lower is better) Translates to: LLLCKERGGAGG*WAFPTRQCSVQ Trigger: CTGTACAGAACACTGCCGTGTGGGAAAGGCCCAGCAGCCTCCTGCTCCTCCTCTCTCCTTACAGAGCAACAG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035725.7
3UTR CCA 72 bp	GGCTTTGAACCAGCTAGGGCTGCAGGTTTCTTCTGCTaGAGAGCACTCTTGCCCACCAGACTCTCAACAAGG	+
Preference number: 3 (lower is better) Translates to: GFEPARAAGFFC*RALLPTRLSTR Trigger: CCTTGTTGAGAGTCTGGTGGGCAAGAGTGCTCTCCAGCAGAAGAAACCTGCAGCCCTAGCTGGTTCAAAGCC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035725.7
3UTR-3UTR CAA 90 bp	GCCAACTGGGGGCCTGGCTTTGAGCTCCCAGAACAAGAAACTGGTGGGTTAGCACAAGAAAAAGCCCTGTaGCTCTGTAAGGAGAGAGGA	+
Preference number: 3 (lower is better) Translates to: ANWGPGFELPEQETGGLAQEKAL*LCKERG Trigger: TCCTCTCTCCTTACAGAGCAACAGGGCTTTTTCTTG...TGCTAACCCACCAGTTTCTTGTTCTGGGAGCTCAAAGCCAGGCCCCCAGTTGGC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000035725.7
3UTR-3UTR CAA 90 bp	GGGCACAAGTCTCAGCCAGGACTGCCTCCACCTCTCACAGGTGGAGAGAAGGCCAACACCTCAAACACATaGACAAGTAGTTCCGAACAA	+
Preference number: 3 (lower is better) Translates to: GHKSQPGLPPPLTGGEKANTSNT*TSSSEQ Trigger: TTGTTCGGAACTACTTGTCAATGTGTTTGAGGTGTT...GGCCTTCTCTCCACCTGTGAGAGGTGGAGGCAGTCCTGGCTGAGACTTGTGCCC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035725.7
3UTR-3UTR CAA 90 bp	CCCTTCAAGCCAACTGGGGGCCTGGCTTTGAGCTCCCAGAACAAGAAACTGGTGAGAGAAGGCCGACTGTaGACAGAAATCAGTGTAGAG	+
Preference number: 3 (lower is better) Translates to: PFKPTGGLALSSQNKKLVREGRL*TEISVE Trigger: CTCTACACTGATTTCTGTCAACAGTCGGCCTTCTCT...CACCAGTTTCTTGTTCTGGGAGCTCAAAGCCAGGCCCCCAGTTGGCTTGAAGGG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000035725.7
3UTR-3UTR CAA 90 bp	GTGGAGAGAAGGCCGACTGTTGACAGAAATCAGTGTAGAGGCCATGGGAGCTGTTCTGAGAGAAAGAGTTaGAGAGGTGGGGAGGACCTT	+
Preference number: 3 (lower is better) Translates to: VERRPTVDRNQCRGHGSCSERKS*RGGEDL Trigger: AAGGTCCTCCCCACCTCTCAAACTCTTTCTCTCAGA...ACAGCTCCCATGGCCTCTACACTGATTTCTGTCAACAGTCGGCCTTCTCTCCAC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035725.7
3UTR TCA 72 bp	AGTCCCAGCCTTTGCCTCTCAACACCTCAAACACATTaGCAAGTAGTTCCGAACAATGTTACTGAAAAGGGA	+
Preference number: 3 (lower is better) Translates to: SPSLCLSTPQTH*QVVPNNVTEKG Trigger: TCCCTTTTCAGTAACATTGTTCGGAACTACTTGTCAATGTGTTTGAGGTGTTGAGAGGCAAAGGCTGGGACT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035725.7
3UTR CAA 72 bp	GCTAGGGCTGCAGGTTTCTTCTGCTGGAGAGCACTCTaGCCCACCAGACTCTCAACAAGGAGACCCTCTCCA	+
Preference number: 4 (lower is better) Translates to: ARAAGFFCWRAL*PTRLSTRRPSP Trigger: TGGAGAGGGTCTCCTTGTTGAGAGTCTGGTGGGCAAGAGTGCTCTCCAGCAGAAGAAACCTGCAGCCCTAGC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035725.7
CDS-3UTR CAA 90 bp	CTGTTTCCAAGAGGTCCCCTGGACTGCTTGCTCCCCCATGCCACGTCATACCCCTTAGTGTTGCGAGTCTaGAACGACAAGACATATCGA	+
Preference number: 5 (lower is better) Translates to: LFPRGPLDCLLPHATSYPLVLRV*NDKTYR Trigger: TCGATATGTCTTGTCGTTCAAGACTCGCAACACTAA...GGGGTATGACGTGGCATGGGGGAGCAAGCAGTCCAGGGGACCTCTTGGAAACAG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000035725.7
CDS-3UTR CAA 90 bp	AGAAGGCCGACTGTTGACAGAAATCAGTGTAGAGGCCATGGGAGCTGTAGGGAATCAGAGTCTCACCCTTaGTCACCCTCGCTTCAATGT	+
Preference number: 5 (lower is better) Translates to: RRPTVDRNQCRGHGSCRESESHP*SPSLQC Trigger: ACATTGAAGCGAGGGTGACAAAGGGTGAGACTCTGA...TTCCCTACAGCTCCCATGGCCTCTACACTGATTTCTGTCAACAGTCGGCCTTCT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035725.7
CDS-3UTR CAA 90 bp	GTGGAGAGAAGGCCGACTGTTGACAGAAATCAGTGTAGAGGCCATGGGAGCTGTATTTCTCATTTAGTGTaGCGAGTCTTGAACGACAAG	+
Preference number: 5 (lower is better) Translates to: VERRPTVDRNQCRGHGSCISHLV*RVLNDK Trigger: CTTGTCGTTCAAGACTCGCAACACTAAATGAGAAAT...ACAGCTCCCATGGCCTCTACACTGATTTCTGTCAACAGTCGGCCTTCTCTCCAC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035725.7