Pregenerated sensors for BRICD5 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000045744Ensembl transcript IDs: ENSMUST00000054946.10, ENSMUST00000164508.2, ENSMUST00000238986.2
Found 47 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR TCA 90 bp | GCCAGGCAATCTGGGTTTATTAATCCCTACTGTCAGCTGCCTTCCATAGGTACTACCTGGCCAGCTTACTaGCCTGTGGGGACAGGACTG | + |
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Preference number: 2 (lower is better) Translates to: ARQSGFINPYCQLPSIGTTWPAY*PVGTGL Trigger: CAGTCCTGTCCCCACAGGTCAGTAAGCTGGCCAGGT...AGTACCTATGGAAGGCAGCTGACAGTAGGGATTAATAAACCCAGATTGCCTGGC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000054946.10 ENSMUST00000238986.2 |
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| 3UTR-3UTR CCA 90 bp | ATTAATCCCTACTGTCAGCTGCCTTCCATAGGTACTGGTGACCTGGCCAGCTTACTGTGGGGACAGGACTaGCCTATGGAACCAAAGGCC | + |
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Preference number: 2 (lower is better) Translates to: INPYCQLPSIGTGDLASLLWGQD*PMEPKA Trigger: GGCCTTTGGTTCCATAGGCCAGTCCTGTCCCCACAG...TAAGCTGGCCAGGTCACCAGTACCTATGGAAGGCAGCTGACAGTAGGGATTAAT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000054946.10 ENSMUST00000238986.2 |
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| 3UTR-3UTR CCA 90 bp | TCTGGGTTTATTAATCCCTACTGTCAGCTGCCTTCCATAGGTACTGGTGACCTGCTGTGGGGACAGGACTaGCCTATGGAACCAAAGGCC | + |
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Preference number: 2 (lower is better) Translates to: SGFINPYCQLPSIGTGDLLWGQD*PMEPKA Trigger: GGCCTTTGGTTCCATAGGCCAGTCCTGTCCCCACAG...CAGGTCACCAGTACCTATGGAAGGCAGCTGACAGTAGGGATTAATAAACCCAGA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000054946.10 ENSMUST00000238986.2 |
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| CDS-3UTR TCA 90 bp | GACCTGTGGGGACAGGACTGGCCTATGGAACCAAAGGCCAGGAGGGCTTGGGTACCACGGCCCCCGCAGTaGGCAGTGTCAGCAGCAGCA | + |
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Preference number: 4 (lower is better) Translates to: DLWGQDWPMEPKARRAWVPRPPQ*AVSAAA Trigger: TGCTGCTGCTGACACTGCTCACTGCGGGGGCCGTGG...TACCCAAGCCCTCCTGGCCTTTGGTTCCATAGGCCAGTCCTGTCCCCACAGGTC 64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000238986.2 |
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| CDS-3UTR GCA 90 bp | CTGTGGGGACAGGACTGGCCTATGGAACCAAAGGCCAGGAGGGCTTGGGTAGGGCAGCCCAGCTGTGGTTaGTCTGAAACGGAGTCACCA | + |
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Preference number: 4 (lower is better) Translates to: LWGQDWPMEPKARRAWVGQPSCG*SETESP Trigger: TGGTGACTCCGTTTCAGAGCAACCACAGCTGGGCTG...CCCTACCCAAGCCCTCCTGGCCTTTGGTTCCATAGGCCAGTCCTGTCCCCACAG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000054946.10 ENSMUST00000238986.2 |
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| CDS-3UTR GCA 90 bp | CTGTGGGGACAGGACTGGCCTATGGAACCAAAGGCCAGGAGGGCTTGGGTAGGGGTGTTCAGCAGCAGCTaGAGGGTCTCCCAATCTTGG | + |
|
Preference number: 4 (lower is better) Translates to: LWGQDWPMEPKARRAWVGVFSSS*RVSQSW Trigger: CCAAGATTGGGAGACCCTGCAGCTGCTGCTGAACAC...CCCTACCCAAGCCCTCCTGGCCTTTGGTTCCATAGGCCAGTCCTGTCCCCACAG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000054946.10 ENSMUST00000238986.2 |
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| CDS-3UTR CCA 90 bp | CTGTGGGGACAGGACTGGCCTATGGAACCAAAGGCCAGGAGGGCTTGGGTAGGGAGGGTCTCCCAATCTTaGGCTTCCATCAGACGGAGG | + |
|
Preference number: 4 (lower is better) Translates to: LWGQDWPMEPKARRAWVGRVSQS*ASIRRR Trigger: CCTCCGTCTGATGGAAGCCCAAGATTGGGAGACCCT...CCCTACCCAAGCCCTCCTGGCCTTTGGTTCCATAGGCCAGTCCTGTCCCCACAG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000054946.10 ENSMUST00000238986.2 |
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| CDS-3UTR GCA 90 bp | CTGTGGGGACAGGACTGGCCTATGGAACCAAAGGCCAGGAGGGCTTGGGTAGGGAGTCACCACGATGGTTaGCATGTTCTGGGCCACATC | + |
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Preference number: 4 (lower is better) Translates to: LWGQDWPMEPKARRAWVGSHHDG*HVLGHI Trigger: GATGTGGCCCAGAACATGGCAACCATCGTGGTGACT...CCCTACCCAAGCCCTCCTGGCCTTTGGTTCCATAGGCCAGTCCTGTCCCCACAG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000054946.10 ENSMUST00000238986.2 |
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| CDS-3UTR GCA 90 bp | GACCTGTGGGGACAGGACTGGCCTATGGAACCAAAGGCCAGGAGGGCTTGGGTAGCAGGCTTGGTGCTCTaGAGGGCGGTAACAGATGTA | + |
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Preference number: 4 (lower is better) Translates to: DLWGQDWPMEPKARRAWVAGLVL*RAVTDV Trigger: TACATCTGTTACCGCCCTGCAGAGCACCAAGCCTGC...TACCCAAGCCCTCCTGGCCTTTGGTTCCATAGGCCAGTCCTGTCCCCACAGGTC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000054946.10 ENSMUST00000238986.2 |
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| CDS-3UTR GCA 90 bp | TACTGTCAGCTGCCTTCCATAGGTACTGGTGACCTGGCCAGCTTACTGACCTGTCAGCAGCAGCAGGCCTaGTGCTCTCCAGCCCCTATG | + |
|
Preference number: 4 (lower is better) Translates to: YCQLPSIGTGDLASLLTCQQQQA*CSPAPM Trigger: CATAGGGGCTGGAGAGCAGCAGGCCTGCTGCTGCTG...ACAGGTCAGTAAGCTGGCCAGGTCACCAGTACCTATGGAAGGCAGCTGACAGTA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000238986.2 |
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| CDS-3UTR CCA 90 bp | GACCTGTGGGGACAGGACTGGCCTATGGAACCAAAGGCCAGGAGGGCTTGGGTAGGTACATGTGACTCTTaGGCCCTGGAAGTGTTCAGC | + |
|
Preference number: 4 (lower is better) Translates to: DLWGQDWPMEPKARRAWVGTCDS*ALEVFS Trigger: GCTGAACACTTCCAGGGCCCAAGAGTCACATGTACC...TACCCAAGCCCTCCTGGCCTTTGGTTCCATAGGCCAGTCCTGTCCCCACAGGTC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000054946.10 ENSMUST00000238986.2 |
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| CDS-3UTR GCA 90 bp | CCCTACTGTCAGCTGCCTTCCATAGGTACTGGTGACCTGGCCAGCTTACTGACCGTGTTCAGCAGCAGCTaGAGGGTCTCCCAATCTTGG | + |
|
Preference number: 4 (lower is better) Translates to: PYCQLPSIGTGDLASLLTVFSSS*RVSQSW Trigger: CCAAGATTGGGAGACCCTGCAGCTGCTGCTGAACAC...GGTCAGTAAGCTGGCCAGGTCACCAGTACCTATGGAAGGCAGCTGACAGTAGGG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000054946.10 ENSMUST00000238986.2 |
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| CDS-3UTR CCA 90 bp | CCCTACTGTCAGCTGCCTTCCATAGGTACTGGTGACCTGGCCAGCTTACTGACCGGTACATGTGACTCTTaGGCCCTGGAAGTGTTCAGC | + |
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Preference number: 4 (lower is better) Translates to: PYCQLPSIGTGDLASLLTGTCDS*ALEVFS Trigger: GCTGAACACTTCCAGGGCCCAAGAGTCACATGTACC...GGTCAGTAAGCTGGCCAGGTCACCAGTACCTATGGAAGGCAGCTGACAGTAGGG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000054946.10 ENSMUST00000238986.2 |
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| CDS-3UTR GCA 90 bp | CCCTACTGTCAGCTGCCTTCCATAGGTACTGGTGACCTGGCCAGCTTACTGACCGGAAGCAGATGTCAATaGAGAGGTAGATCAGCCGCT | + |
|
Preference number: 4 (lower is better) Translates to: PYCQLPSIGTGDLASLLTGSRCQ*RGRSAA Trigger: AGCGGCTGATCTACCTCTGCATTGACATCTGCTTCC...GGTCAGTAAGCTGGCCAGGTCACCAGTACCTATGGAAGGCAGCTGACAGTAGGG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000054946.10 ENSMUST00000238986.2 |
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| CDS-3UTR CCA 90 bp | TACTGTCAGCTGCCTTCCATAGGTACTGGTGACCTGGCCAGCTTACTGACCTGTAGGGTCTCCCAATCTTaGGCTTCCATCAGACGGAGG | + |
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Preference number: 4 (lower is better) Translates to: YCQLPSIGTGDLASLLTCRVSQS*ASIRRR Trigger: CCTCCGTCTGATGGAAGCCCAAGATTGGGAGACCCT...ACAGGTCAGTAAGCTGGCCAGGTCACCAGTACCTATGGAAGGCAGCTGACAGTA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000054946.10 ENSMUST00000238986.2 |
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| CDS-3UTR GCA 90 bp | TACTGTCAGCTGCCTTCCATAGGTACTGGTGACCTGGCCAGCTTACTGACCTGTAGTCACCACGATGGTTaGCATGTTCTGGGCCACATC | + |
|
Preference number: 4 (lower is better) Translates to: YCQLPSIGTGDLASLLTCSHHDG*HVLGHI Trigger: GATGTGGCCCAGAACATGGCAACCATCGTGGTGACT...ACAGGTCAGTAAGCTGGCCAGGTCACCAGTACCTATGGAAGGCAGCTGACAGTA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000054946.10 ENSMUST00000238986.2 |
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| CDS-3UTR GCA 90 bp | CCCTACTGTCAGCTGCCTTCCATAGGTACTGGTGACCTGGCCAGCTTACTGACCCAGACACACAGATGTTaGTCGGGAAGCAGATGTCAA | + |
|
Preference number: 4 (lower is better) Translates to: PYCQLPSIGTGDLASLLTQTHRC*SGSRCQ Trigger: TTGACATCTGCTTCCCGAGCAACATCTGTGTGTCTG...GGTCAGTAAGCTGGCCAGGTCACCAGTACCTATGGAAGGCAGCTGACAGTAGGG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000054946.10 ENSMUST00000238986.2 |
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| CDS-3UTR CCA 90 bp | GCCAGGCAATCTGGGTTTATTAATCCCTACTGTCAGCTGCCTTCCATAGGTACTATCAGCCGCTGTCTCTaGGGCCCTTCTGCCCATTGG | + |
|
Preference number: 4 (lower is better) Translates to: ARQSGFINPYCQLPSIGTISRCL*GPSAHW Trigger: CCAATGGGCAGAAGGGCCCCAGAGACAGCGGCTGAT...AGTACCTATGGAAGGCAGCTGACAGTAGGGATTAATAAACCCAGATTGCCTGGC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000054946.10 ENSMUST00000238986.2 |
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| CDS-3UTR CCA 90 bp | ATTAATCCCTACTGTCAGCTGCCTTCCATAGGTACTGGTGACCTGGCCAGCTTAGCTCTCCAGCCCCTATaGCAGGGTTTGGTCTTCACC | + |
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Preference number: 4 (lower is better) Translates to: INPYCQLPSIGTGDLASLALQPL*QGLVFT Trigger: GGTGAAGACCAAACCCTGCCATAGGGGCTGGAGAGC...TAAGCTGGCCAGGTCACCAGTACCTATGGAAGGCAGCTGACAGTAGGGATTAAT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000238986.2 |
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| CDS-3UTR CCA 90 bp | ATTAATCCCTACTGTCAGCTGCCTTCCATAGGTACTGGTGACCTGGCCAGCTTACCCTATGGCAGGGTTTaGTCTTCACCTCAGCAGGCT | + |
|
Preference number: 4 (lower is better) Translates to: INPYCQLPSIGTGDLASLPYGRV*SSPQQA Trigger: AGCCTGCTGAGGTGAAGACCAAACCCTGCCATAGGG...TAAGCTGGCCAGGTCACCAGTACCTATGGAAGGCAGCTGACAGTAGGGATTAAT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000238986.2 |
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| CDS-3UTR GCA 90 bp | GCCAGGCAATCTGGGTTTATTAATCCCTACTGTCAGCTGCCTTCCATAGGTACTCAGCCCAGCTGTGGTTaGTCTGAAACGGAGTCACCA | + |
|
Preference number: 4 (lower is better) Translates to: ARQSGFINPYCQLPSIGTQPSCG*SETESP Trigger: TGGTGACTCCGTTTCAGAGCAACCACAGCTGGGCTG...AGTACCTATGGAAGGCAGCTGACAGTAGGGATTAATAAACCCAGATTGCCTGGC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000054946.10 ENSMUST00000238986.2 |
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| CDS-3UTR GCA 90 bp | TACTGTCAGCTGCCTTCCATAGGTACTGGTGACCTGGCCAGCTTACTGACCTGTTCTGCACAAAGGTGTTaGACTGAAACTCCCACTTGG | + |
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Preference number: 4 (lower is better) Translates to: YCQLPSIGTGDLASLLTCSAQRC*TETPTW Trigger: CCAAGTGGGAGTTTCAGTGCAACACCTTTGTGCAGA...ACAGGTCAGTAAGCTGGCCAGGTCACCAGTACCTATGGAAGGCAGCTGACAGTA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000054946.10 ENSMUST00000238986.2 |
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| CDS-3UTR GCA 90 bp | TACTGTCAGCTGCCTTCCATAGGTACTGGTGACCTGGCCAGCTTACTGACCTGTCAGACACACAGATGTTaGTCGGGAAGCAGATGTCAA | + |
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Preference number: 4 (lower is better) Translates to: YCQLPSIGTGDLASLLTCQTHRC*SGSRCQ Trigger: TTGACATCTGCTTCCCGAGCAACATCTGTGTGTCTG...ACAGGTCAGTAAGCTGGCCAGGTCACCAGTACCTATGGAAGGCAGCTGACAGTA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000054946.10 ENSMUST00000238986.2 |
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| CDS-3UTR GCA 90 bp | ATTAATCCCTACTGTCAGCTGCCTTCCATAGGTACTGGTGACCTGGCCAGCTTAGGAAGCAGATGTCAATaGAGAGGTAGATCAGCCGCT | + |
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Preference number: 4 (lower is better) Translates to: INPYCQLPSIGTGDLASLGSRCQ*RGRSAA Trigger: AGCGGCTGATCTACCTCTGCATTGACATCTGCTTCC...TAAGCTGGCCAGGTCACCAGTACCTATGGAAGGCAGCTGACAGTAGGGATTAAT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000054946.10 ENSMUST00000238986.2 |
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| CDS-3UTR GCA 90 bp | TCTGGGTTTATTAATCCCTACTGTCAGCTGCCTTCCATAGGTACTGGTGACCTGTCTGCACAAAGGTGTTaGACTGAAACTCCCACTTGG | + |
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Preference number: 4 (lower is better) Translates to: SGFINPYCQLPSIGTGDLSAQRC*TETPTW Trigger: CCAAGTGGGAGTTTCAGTGCAACACCTTTGTGCAGA...CAGGTCACCAGTACCTATGGAAGGCAGCTGACAGTAGGGATTAATAAACCCAGA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000054946.10 ENSMUST00000238986.2 |
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| CDS TCA 90 bp | TGCCAGCAGCTCCTGGGCATAGTGGGTATCCCGGCCAGGTACATGTaGCTCTTGGGCCCTGGAAGTGTTCAGCAGCAGCTGCAGGGTCTC | + |
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Preference number: 5 (lower is better) Translates to: CQQLLGIVGIPARYM*LLGPGSVQQQLQGL Trigger: GAGACCCTGCAGCTGCTGCTGAACACTTCCAGGGCCCAAGAGTCACATGTACCTGGCCGGGATACCCACTATGCCCAGGAGCTGCTGGCA 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000054946.10 ENSMUST00000164508.2 ENSMUST00000238986.2 |
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| CDS-3UTR CAA 90 bp | CTGTGGGGACAGGACTGGCCTATGGAACCAAAGGCCAGGAGGGCTTGGGTAGGGGAGTCACCACGATGGTaGCCATGTTCTGGGCCACAT | + |
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Preference number: 5 (lower is better) Translates to: LWGQDWPMEPKARRAWVGESPRW*PCSGPH Trigger: ATGTGGCCCAGAACATGGCAACCATCGTGGTGACTC...CCCTACCCAAGCCCTCCTGGCCTTTGGTTCCATAGGCCAGTCCTGTCCCCACAG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000054946.10 ENSMUST00000238986.2 |
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| CDS-3UTR CAA 90 bp | GACCTGTGGGGACAGGACTGGCCTATGGAACCAAAGGCCAGGAGGGCTTGGGTATTCACCTCAGCAGGCTaGGACCTGAGGCTCTCAGTG | + |
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Preference number: 5 (lower is better) Translates to: DLWGQDWPMEPKARRAWVFTSAG*DLRLSV Trigger: CACTGAGAGCCTCAGGTCCAAGCCTGCTGAGGTGAA...TACCCAAGCCCTCCTGGCCTTTGGTTCCATAGGCCAGTCCTGTCCCCACAGGTC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000238986.2 |
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| CDS CCA 90 bp | GGGCATAGTGGGTATCCCGGCCAGGTACATGTGACTCTTGGGCCCTaGAAGTGTTCAGCAGCAGCTGCAGGGTCTCCCAATCTTGGGCTT | + |
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Preference number: 5 (lower is better) Translates to: GHSGYPGQVHVTLGP*KCSAAAAGSPNLGL Trigger: AAGCCCAAGATTGGGAGACCCTGCAGCTGCTGCTGAACACTTCCAGGGCCCAAGAGTCACATGTACCTGGCCGGGATACCCACTATGCCC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000054946.10 ENSMUST00000164508.2 ENSMUST00000238986.2 |
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| CDS-3UTR CAA 90 bp | CCCTACTGTCAGCTGCCTTCCATAGGTACTGGTGACCTGGCCAGCTTACTGACCGGGCCCTTCTGCCCATaGGGTCCAGTAGATGGGAGT | + |
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Preference number: 5 (lower is better) Translates to: PYCQLPSIGTGDLASLLTGPFCP*GPVDGS Trigger: ACTCCCATCTACTGGACCCAATGGGCAGAAGGGCCC...GGTCAGTAAGCTGGCCAGGTCACCAGTACCTATGGAAGGCAGCTGACAGTAGGG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000054946.10 ENSMUST00000238986.2 |
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| CDS GCA 90 bp | CCAGGTACATGTGACTCTTGGGCCCTGGAAGTGTTCAGCAGCAGCTaGAGGGTCTCCCAATCTTGGGCTTCCATCAGACGGAGGAAGCAG | + |
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Preference number: 5 (lower is better) Translates to: PGTCDSWALEVFSSS*RVSQSWASIRRRKQ Trigger: CTGCTTCCTCCGTCTGATGGAAGCCCAAGATTGGGAGACCCTGCAGCTGCTGCTGAACACTTCCAGGGCCCAAGAGTCACATGTACCTGG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000054946.10 ENSMUST00000164508.2 ENSMUST00000238986.2 |
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| CDS CCA 90 bp | TCAGCCGCTGTCTCTGGGGCCCTTCTGCCCATTGGGTCCAGTAGATaGGAGTGTCTGCACAAAGGTGTTGCACTGAAACTCCCACTTGGG | + |
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Preference number: 5 (lower is better) Translates to: SAAVSGALLPIGSSR*ECLHKGVALKLPLG Trigger: CCCAAGTGGGAGTTTCAGTGCAACACCTTTGTGCAGACACTCCCATCTACTGGACCCAATGGGCAGAAGGGCCCCAGAGACAGCGGCTGA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000054946.10 ENSMUST00000164508.2 ENSMUST00000238986.2 |
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| CDS GCA 90 bp | GATGTCAATGCAGAGGTAGATCAGCCGCTGTCTCTGGGGCCCTTCTaGCCATTGGGTCCAGTAGATGGGAGTGTCTGCACAAAGGTGTTG | + |
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Preference number: 5 (lower is better) Translates to: DVNAEVDQPLSLGPF*PLGPVDGSVCTKVL Trigger: CAACACCTTTGTGCAGACACTCCCATCTACTGGACCCAATGGGCAGAAGGGCCCCAGAGACAGCGGCTGATCTACCTCTGCATTGACATC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000054946.10 ENSMUST00000164508.2 ENSMUST00000238986.2 |
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| CDS GCA 90 bp | AAAAGCAGACAGACACACAGATGTTGCTCGGGAAGCAGATGTCAATaGAGAGGTAGATCAGCCGCTGTCTCTGGGGCCCTTCTGCCCATT | + |
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Preference number: 5 (lower is better) Translates to: KSRQTHRCCSGSRCQ*RGRSAAVSGALLPI Trigger: AATGGGCAGAAGGGCCCCAGAGACAGCGGCTGATCTACCTCTGCATTGACATCTGCTTCCCGAGCAACATCTGTGTGTCTGTCTGCTTTT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000054946.10 ENSMUST00000164508.2 ENSMUST00000238986.2 |
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| CDS-3UTR CAA 90 bp | TCTGGGTTTATTAATCCCTACTGTCAGCTGCCTTCCATAGGTACTGGTGACCTGGGGCCCTTCTGCCCATaGGGTCCAGTAGATGGGAGT | + |
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Preference number: 5 (lower is better) Translates to: SGFINPYCQLPSIGTGDLGPFCP*GPVDGS Trigger: ACTCCCATCTACTGGACCCAATGGGCAGAAGGGCCC...CAGGTCACCAGTACCTATGGAAGGCAGCTGACAGTAGGGATTAATAAACCCAGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000054946.10 ENSMUST00000238986.2 |
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| CDS-3UTR CAA 90 bp | ATTAATCCCTACTGTCAGCTGCCTTCCATAGGTACTGGTGACCTGGCCAGCTTAGAGTCACCACGATGGTaGCCATGTTCTGGGCCACAT | + |
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Preference number: 5 (lower is better) Translates to: INPYCQLPSIGTGDLASLESPRW*PCSGPH Trigger: ATGTGGCCCAGAACATGGCAACCATCGTGGTGACTC...TAAGCTGGCCAGGTCACCAGTACCTATGGAAGGCAGCTGACAGTAGGGATTAAT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000054946.10 ENSMUST00000238986.2 |
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| CDS GCA 72 bp | CCCCGCAGTGAGCAGTGTCAGCAGCAGCAGCAGGCCTaGTGCTCTCCAGCCCCTATGGCAGGGTTTGGTCTT | + |
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Preference number: 6 (lower is better) Translates to: PRSEQCQQQQQA*CSPAPMAGFGL Trigger: AAGACCAAACCCTGCCATAGGGGCTGGAGAGCAGCAGGCCTGCTGCTGCTGCTGACACTGCTCACTGCGGGG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000238986.2 |
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| CDS CAA 72 bp | CCCCTATGGCAGGGTTTGGTCTTCACCTCAGCAGGCTaGGACCTGAGGCTCTCAGTGTGGATGCGCCCTTGC | + |
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Preference number: 6 (lower is better) Translates to: PLWQGLVFTSAG*DLRLSVWMRPC Trigger: GCAAGGGCGCATCCACACTGAGAGCCTCAGGTCCAAGCCTGCTGAGGTGAAGACCAAACCCTGCCATAGGGG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000238986.2 |
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| CDS TCA 72 bp | CTCCTGGGCATAGTGGGTATCCCGGCCAGGTACATGTaGCTCTTGGGCCCTGGAAGTGTTCAGCAGCAGCTG | + |
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Preference number: 6 (lower is better) Translates to: LLGIVGIPARYM*LLGPGSVQQQL Trigger: CAGCTGCTGCTGAACACTTCCAGGGCCCAAGAGTCACATGTACCTGGCCGGGATACCCACTATGCCCAGGAG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000054946.10 ENSMUST00000164508.2 ENSMUST00000238986.2 |
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| CDS GCA 72 bp | GCAGAGGTAGATCAGCCGCTGTCTCTGGGGCCCTTCTaGCCATTGGGTCCAGTAGATGGGAGTGTCTGCACA | + |
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Preference number: 6 (lower is better) Translates to: AEVDQPLSLGPF*PLGPVDGSVCT Trigger: TGTGCAGACACTCCCATCTACTGGACCCAATGGGCAGAAGGGCCCCAGAGACAGCGGCTGATCTACCTCTGC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000054946.10 ENSMUST00000164508.2 ENSMUST00000238986.2 |
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| CDS CCA 72 bp | GGGTATCCCGGCCAGGTACATGTGACTCTTGGGCCCTaGAAGTGTTCAGCAGCAGCTGCAGGGTCTCCCAAT | + |
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Preference number: 6 (lower is better) Translates to: GYPGQVHVTLGP*KCSAAAAGSPN Trigger: ATTGGGAGACCCTGCAGCTGCTGCTGAACACTTCCAGGGCCCAAGAGTCACATGTACCTGGCCGGGATACCC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000054946.10 ENSMUST00000164508.2 ENSMUST00000238986.2 |
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| CDS GCA 72 bp | TGTGACTCTTGGGCCCTGGAAGTGTTCAGCAGCAGCTaGAGGGTCTCCCAATCTTGGGCTTCCATCAGACGG | + |
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Preference number: 6 (lower is better) Translates to: CDSWALEVFSSS*RVSQSWASIRR Trigger: CCGTCTGATGGAAGCCCAAGATTGGGAGACCCTGCAGCTGCTGCTGAACACTTCCAGGGCCCAAGAGTCACA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000054946.10 ENSMUST00000164508.2 ENSMUST00000238986.2 |
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| CDS CAA 72 bp | GGAAGTGTTCAGCAGCAGCTGCAGGGTCTCCCAATCTaGGGCTTCCATCAGACGGAGGAAGCAGGCTTGGTG | + |
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Preference number: 6 (lower is better) Translates to: GSVQQQLQGLPI*GFHQTEEAGLV Trigger: CACCAAGCCTGCTTCCTCCGTCTGATGGAAGCCCAAGATTGGGAGACCCTGCAGCTGCTGCTGAACACTTCC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000054946.10 ENSMUST00000164508.2 ENSMUST00000238986.2 |
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| CDS TCA 72 bp | TGCCCGTCAAACAGCACAGCCCAGCTGTGGTTGCTCTaGAACGGAGTCACCACGATGGTTGCCATGTTCTGG | + |
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Preference number: 6 (lower is better) Translates to: CPSNSTAQLWLL*NGVTTMVAMFW Trigger: CCAGAACATGGCAACCATCGTGGTGACTCCGTTTCAGAGCAACCACAGCTGGGCTGTGCTGTTTGACGGGCA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000054946.10 ENSMUST00000164508.2 ENSMUST00000238986.2 |
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| CDS CAA 72 bp | GCCATGTTCTGGGCCACATCCACTAGAGTAGTTTGGTaGGGCCAGGGTACCCTGGAGCTCGGGAAGGTCTTT | + |
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Preference number: 6 (lower is better) Translates to: AMFWATSTRVVW*GQGTLELGKVF Trigger: AAAGACCTTCCCGAGCTCCAGGGTACCCTGGCCCAACCAAACTACTCTAGTGGATGTGGCCCAGAACATGGC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000054946.10 ENSMUST00000164508.2 ENSMUST00000238986.2 |
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| CDS GCA 72 bp | CAGACACACAGATGTTGCTCGGGAAGCAGATGTCAATaGAGAGGTAGATCAGCCGCTGTCTCTGGGGCCCTT | + |
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Preference number: 6 (lower is better) Translates to: QTHRCCSGSRCQ*RGRSAAVSGAL Trigger: AAGGGCCCCAGAGACAGCGGCTGATCTACCTCTGCATTGACATCTGCTTCCCGAGCAACATCTGTGTGTCTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000054946.10 ENSMUST00000164508.2 ENSMUST00000238986.2 |
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| CDS CCA 72 bp | GTCTCTGGGGCCCTTCTGCCCATTGGGTCCAGTAGATaGGAGTGTCTGCACAAAGGTGTTGCACTGAAACTC | + |
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Preference number: 6 (lower is better) Translates to: VSGALLPIGSSR*ECLHKGVALKL Trigger: GAGTTTCAGTGCAACACCTTTGTGCAGACACTCCCATCTACTGGACCCAATGGGCAGAAGGGCCCCAGAGAC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000054946.10 ENSMUST00000164508.2 ENSMUST00000238986.2 |
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