Pregenerated sensors for BRI3 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000047843Ensembl transcript IDs: ENSMUST00000056578.7, ENSMUST00000110695.8, ENSMUST00000155491.8
Found 27 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | TCTTCAGCCCAGAGGGATAAGTCGGTGACAGACACCCATGAACGTTaGTGTAGTCCTGGTTTCTCTCATCTTTTCTCACAGCCACAGATT | + |
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Preference number: 1 (lower is better) Translates to: SSAQRDKSVTDTHER*CSPGFSHLFSQPQI Trigger: AATCTGTGGCTGTGAGAAAAGATGAGAGAAACCAGGACTACAGCAACGTTCATGGGTGTCTGTCACCGACTTATCCCTCTGGGCTGAAGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000155491.8 |
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| 3UTR TCA 90 bp | TCCTGGTTTCTCTCATCTTTTCTCACAGCCACAGATTCTTGTACATaGATGGCCTGTCTGCATAATGGGATTCCATTATCGGTAGTTGCT | + |
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Preference number: 1 (lower is better) Translates to: SWFLSSFLTATDSCT*MACLHNGIPLSVVA Trigger: AGCAACTACCGATAATGGAATCCCATTATGCAGACAGGCCATTCATGTACAAGAATCTGTGGCTGTGAGAAAAGATGAGAGAAACCAGGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000155491.8 |
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| 3UTR CCA 90 bp | AAACAGATGTTTGGCAGAAAACCACGTGGCTTTTATGTTTGTGAATaGCAATACCTTCCTCCGAAACATTCTCTAAGTTCCCACTATCTC | + |
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Preference number: 1 (lower is better) Translates to: KQMFGRKPRGFYVCE*QYLPPKHSLSSHYL Trigger: GAGATAGTGGGAACTTAGAGAATGTTTCGGAGGAAGGTATTGCCATTCACAAACATAAAAGCCACGTGGTTTTCTGCCAAACATCTGTTT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000155491.8 |
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| 3UTR-3UTR GCA 90 bp | GTAAAAACCCATGGTCGAGCAGAACAAGCTACACAATGGTATGAATCTCATTTAGCTGCCTTCCACCTCTaGGTCACCCCTATGCCAGTC | + |
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Preference number: 2 (lower is better) Translates to: VKTHGRAEQATQWYESHLAAFHL*VTPMPV Trigger: GACTGGCATAGGGGTGACGCAGAGGTGGAAGGCAGC...TAAATGAGATTCATACCATTGTGTAGCTTGTTCTGCTCGACCATGGGTTTTTAC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000056578.7 |
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| 3UTR-3UTR TCA 90 bp | ACACTGCACTGGCATAGGATAAAATCACAAGTGGAAGAATGTTCCGGTTTCCATTGGCTTTTATGTTTGTaGATGGCAATACCTTCCTCC | + |
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Preference number: 2 (lower is better) Translates to: TLHWHRIKSQVEECSGFHWLLCL*MAIPSS Trigger: GGAGGAAGGTATTGCCATTCACAAACATAAAAGCCA...ATGGAAACCGGAACATTCTTCCACTTGTGATTTTATCCTATGCCAGTGCAGTGT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000155491.8 |
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| 3UTR-3UTR GCA 90 bp | GTGGAAGAATGTTCCGGTTTCCATACAGGGGATCTCATAAAATGTATTAAGGATCATGAATGGCCTGTCTaGATAATGGGATTCCATTAT | + |
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Preference number: 2 (lower is better) Translates to: VEECSGFHTGDLIKCIKDHEWPV*IMGFHY Trigger: ATAATGGAATCCCATTATGCAGACAGGCCATTCATG...ATCCTTAATACATTTTATGAGATCCCCTGTATGGAAACCGGAACATTCTTCCAC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000155491.8 |
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| 3UTR GCA 72 bp | AGCAGCACGTTACCCTTAGCCTTGGGGGCAGGTCGCTaGCTTCCACCTCTGCGTCACCCCTATGCCAGTCTA | + |
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Preference number: 3 (lower is better) Translates to: SSTLPLALGAGR*LPPLRHPYASL Trigger: TAGACTGGCATAGGGGTGACGCAGAGGTGGAAGGCAGCGACCTGCCCCCAAGGCTAAGGGTAACGTGCTGCT 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000056578.7 ENSMUST00000110695.8 |
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| 3UTR GCA 72 bp | GGCAGGTCGCTGCCTTCCACCTCTGCGTCACCCCTATaGCAGTCTAGCCCGCCACACTTTACAAAACAGTCC | + |
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Preference number: 3 (lower is better) Translates to: GRSLPSTSASPL*QSSPPHFTKQS Trigger: GGACTGTTTTGTAAAGTGTGGCGGGCTAGACTGGCATAGGGGTGACGCAGAGGTGGAAGGCAGCGACCTGCC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000056578.7 ENSMUST00000110695.8 |
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| 3UTR TCA 72 bp | TTCCCACTATCTCTTCAGCCCAGAGGGATAAGTCGGTaGCAGACACCCATGAACGTTGCTGTAGTCCTGGTT | + |
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Preference number: 3 (lower is better) Translates to: FPLSLQPRGISR*QTPMNVAVVLV Trigger: AACCAGGACTACAGCAACGTTCATGGGTGTCTGTCACCGACTTATCCCTCTGGGCTGAAGAGATAGTGGGAA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000155491.8 |
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| 3UTR GCA 72 bp | CAGAGGGATAAGTCGGTGACAGACACCCATGAACGTTaGTGTAGTCCTGGTTTCTCTCATCTTTTCTCACAG | + |
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Preference number: 3 (lower is better) Translates to: QRDKSVTDTHER*CSPGFSHLFSQ Trigger: CTGTGAGAAAAGATGAGAGAAACCAGGACTACAGCAACGTTCATGGGTGTCTGTCACCGACTTATCCCTCTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000155491.8 |
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| 3UTR-3UTR CAA 90 bp | AAGTCGGTGACAGACACCCATGAACGTTGCTGTAGTCCTGGTTTCTCTCATCTTCACAGCCACAGATTCTaGTACATGAATGGCCTGTCT | + |
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Preference number: 3 (lower is better) Translates to: KSVTDTHERCCSPGFSHLHSHRF*YMNGLS Trigger: AGACAGGCCATTCATGTACAAGAATCTGTGGCTGTG...AAGATGAGAGAAACCAGGACTACAGCAACGTTCATGGGTGTCTGTCACCGACTT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000155491.8 |
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| 3UTR TCA 72 bp | CTCTCATCTTTTCTCACAGCCACAGATTCTTGTACATaGATGGCCTGTCTGCATAATGGGATTCCATTATCG | + |
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Preference number: 3 (lower is better) Translates to: LSSFLTATDSCT*MACLHNGIPLS Trigger: CGATAATGGAATCCCATTATGCAGACAGGCCATTCATGTACAAGAATCTGTGGCTGTGAGAAAAGATGAGAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000155491.8 |
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| 3UTR TCA 72 bp | GATGTTTGGCAGAAAACCACGTGGCTTTTATGTTTGTaGATGGCAATACCTTCCTCCGAAACATTCTCTAAG | + |
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Preference number: 3 (lower is better) Translates to: DVWQKTTWLLCL*MAIPSSETFSK Trigger: CTTAGAGAATGTTTCGGAGGAAGGTATTGCCATTCACAAACATAAAAGCCACGTGGTTTTCTGCCAAACATC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000155491.8 |
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| 3UTR CCA 72 bp | TTTGGCAGAAAACCACGTGGCTTTTATGTTTGTGAATaGCAATACCTTCCTCCGAAACATTCTCTAAGTTCC | + |
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Preference number: 3 (lower is better) Translates to: FGRKPRGFYVCE*QYLPPKHSLSS Trigger: GGAACTTAGAGAATGTTTCGGAGGAAGGTATTGCCATTCACAAACATAAAAGCCACGTGGTTTTCTGCCAAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000155491.8 |
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| CDS-3UTR CCA 90 bp | GGGGCAGGTCGCTGCCTTCCACCTCTGCGTCACCCCTATGCCAGTCTAGCCCGCAGACCCGGGGGTGGCTaGTGGGGATCCCTGCTTCCT | + |
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Preference number: 4 (lower is better) Translates to: GAGRCLPPLRHPYASLARRPGGG*WGSLLP Trigger: AGGAAGCAGGGATCCCCACCAGCCACCCCCGGGTCT...GCGGGCTAGACTGGCATAGGGGTGACGCAGAGGTGGAAGGCAGCGACCTGCCCC 68% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000110695.8 |
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| CDS-3UTR TCA 90 bp | GGCAGGTCGCTGCCTTCCACCTCTGCGTCACCCCTATGCCAGTCTAGCCCGCCATGGCCAGAGAGAGCCTaGGGTTGGGCCAGGAAGAGC | + |
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Preference number: 4 (lower is better) Translates to: GRSLPSTSASPLCQSSPPWPERA*GWARKS Trigger: GCTCTTCCTGGCCCAACCTCAGGCTCTCTCTGGCCA...TGGCGGGCTAGACTGGCATAGGGGTGACGCAGAGGTGGAAGGCAGCGACCTGCC 66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000110695.8 |
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| CDS-3UTR GCA 90 bp | AGAAGCAGCACGTTACCCTTAGCCTTGGGGGCAGGTCGCTGCCTTCCACCTCTGGCGGGCGGGCGCTCCTaGAACAGGGGCTTGTGGTCC | + |
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Preference number: 4 (lower is better) Translates to: RSSTLPLALGAGRCLPPLAGGRS*NRGLWS Trigger: GGACCACAAGCCCCTGTTGCAGGAGCGCCCGCCCGC...CAGAGGTGGAAGGCAGCGACCTGCCCCCAAGGCTAAGGGTAACGTGCTGCTTCT 66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000056578.7 |
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| CDS-3UTR GCA 90 bp | TTGGGGGCAGGTCGCTGCCTTCCACCTCTGCGTCACCCCTATGCCAGTCTAGCCCCAGGACACCAACCCTaGAGACCGGGCAGCCTCCGA | + |
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Preference number: 4 (lower is better) Translates to: LGAGRCLPPLRHPYASLAPGHQP*RPGSLR Trigger: TCGGAGGCTGCCCGGTCTGCAGGGTTGGTGTCCTGG...GGCTAGACTGGCATAGGGGTGACGCAGAGGTGGAAGGCAGCGACCTGCCCCCAA 66% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000056578.7 ENSMUST00000110695.8 |
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| CDS-3UTR GCA 90 bp | CAGCACGTTACCCTTAGCCTTGGGGGCAGGTCGCTGCCTTCCACCTCTGCGTCACCAGGACACCAACCCTaGAGACCGGGCAGCCTCCGA | + |
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Preference number: 4 (lower is better) Translates to: QHVTLSLGGRSLPSTSASPGHQP*RPGSLR Trigger: TCGGAGGCTGCCCGGTCTGCAGGGTTGGTGTCCTGG...TGACGCAGAGGTGGAAGGCAGCGACCTGCCCCCAAGGCTAAGGGTAACGTGCTG 64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000056578.7 ENSMUST00000110695.8 |
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| CDS-3UTR CCA 90 bp | TTAGCCTTGGGGGCAGGTCGCTGCCTTCCACCTCTGCGTCACCCCTATGCCAGTCCCGGGGGTGGCTGGTaGGGATCCCTGCTTCCTGTA | + |
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Preference number: 4 (lower is better) Translates to: LALGAGRCLPPLRHPYASPGGGW*GSLLPV Trigger: TACAGGAAGCAGGGATCCCCACCAGCCACCCCCGGG...ACTGGCATAGGGGTGACGCAGAGGTGGAAGGCAGCGACCTGCCCCCAAGGCTAA 64% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000110695.8 |
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| CDS-3UTR TCA 90 bp | AGGACCAGAAGATGGCCATGGGCGGCCTCTGCATGTGACATTTCCCATGGCGAGTGGTGGGGATCCCTGTaGCGAGGTAGGGGTAGGGCG | + |
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Preference number: 4 (lower is better) Translates to: RTRRWPWAASACDISHGEWWGSL*RGRGRA Trigger: CGCCCTACCCCTACCTCGTCACAGGGATCCCCACCA...CTCGCCATGGGAAATGTCACATGCAGAGGCCGCCCATGGCCATCTTCTGGTCCT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000056578.7 |
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| CDS-3UTR CCA 90 bp | GGCAGGTCGCTGCCTTCCACCTCTGCGTCACCCCTATGCCAGTCTAGCCCGCCAGGAAGAGCCCCTTTATaGTCCAGCAGCAGCAGACAG | + |
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Preference number: 4 (lower is better) Translates to: GRSLPSTSASPLCQSSPPGRAPL*SSSSRQ Trigger: CTGTCTGCTGCTGCTGGACCATAAAGGGGCTCTTCC...TGGCGGGCTAGACTGGCATAGGGGTGACGCAGAGGTGGAAGGCAGCGACCTGCC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000110695.8 |
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| CDS-3UTR GCA 90 bp | TTGGGGGCAGGTCGCTGCCTTCCACCTCTGCGTCACCCCTATGCCAGTCTAGCCTCTTCGCTTCCTCAGTaGAAAGCAGCAGAGGAACCC | + |
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Preference number: 4 (lower is better) Translates to: LGAGRCLPPLRHPYASLASSLPQ*KAAEEP Trigger: GGGTTCCTCTGCTGCTTTGCACTGAGGAAGCGAAGA...GGCTAGACTGGCATAGGGGTGACGCAGAGGTGGAAGGCAGCGACCTGCCCCCAA 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000056578.7 ENSMUST00000110695.8 |
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| CDS-3UTR GCA 90 bp | GTGGAAGAATGTTCCGGTTTCCATACAGGGGATCTCATAAAATGTATTAAGGATGCGGGCGGGCGCTCCTaGAACAGGGGCTTGTGGTCC | + |
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Preference number: 4 (lower is better) Translates to: VEECSGFHTGDLIKCIKDAGGRS*NRGLWS Trigger: GGACCACAAGCCCCTGTTGCAGGAGCGCCCGCCCGC...ATCCTTAATACATTTTATGAGATCCCCTGTATGGAAACCGGAACATTCTTCCAC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000155491.8 |
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| CDS-3UTR TCA 90 bp | GTGGAAGAATGTTCCGGTTTCCATACAGGGGATCTCATAAAATGTATTAAGGATTGGTGGGGATCCCTGTaGCGAGGTAGGGGTAGGGCG | + |
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Preference number: 4 (lower is better) Translates to: VEECSGFHTGDLIKCIKDWWGSL*RGRGRA Trigger: CGCCCTACCCCTACCTCGTCACAGGGATCCCCACCA...ATCCTTAATACATTTTATGAGATCCCCTGTATGGAAACCGGAACATTCTTCCAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000155491.8 |
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| CDS-3UTR CAA 90 bp | AGAAGCAGCACGTTACCCTTAGCCTTGGGGGCAGGTCGCTGCCTTCCACCTCTGAGAGAGAGCCTGAGGTaGGGCCAGGAAGAGCCCCTT | + |
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Preference number: 5 (lower is better) Translates to: RSSTLPLALGAGRCLPPLRESLR*GQEEPL Trigger: AAGGGGCTCTTCCTGGCCCAACCTCAGGCTCTCTCT...CAGAGGTGGAAGGCAGCGACCTGCCCCCAAGGCTAAGGGTAACGTGCTGCTTCT 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000110695.8 |
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| CDS CAA 72 bp | GTAAGACGCCCAGAAGTGGCCAGAGAGAGCCTGAGGTaGGGCCAGGAAGAGCCCCTTTATGGTCCAGCAGCA | + |
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Preference number: 6 (lower is better) Translates to: VRRPEVARESLR*GQEEPLYGPAA Trigger: TGCTGCTGGACCATAAAGGGGCTCTTCCTGGCCCAACCTCAGGCTCTCTCTGGCCACTTCTGGGCGTCTTAC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000110695.8 |
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