Pregenerated sensors for BRF2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000031487Ensembl transcript IDs: ENSMUST00000033877.6, ENSMUST00000209770.2, ENSMUST00000210552.2, ENSMUST00000211151.2, ENSMUST00000211236.2
Found 137 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | TTGTTAAGTTTTAGAACCTGTAGCCAGGCCAGCTGGCCGGCCATCTaGAGGAGCACGGCCAGGAGCTCCTGCAGGCGAGAGGCAGCTGGG | + |
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Preference number: 1 (lower is better) Translates to: LLSFRTCSQASWPAI*RSTARSSCRREAAG Trigger: CCCAGCTGCCTCTCGCCTGCAGGAGCTCCTGGCCGTGCTCCTTCAGATGGCCGGCCAGCTGGCCTGGCTACAGGTTCTAAAACTTAACAA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000211236.2 |
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| 3UTR GCA 90 bp | AACTGGGCAAGAGAGCAGGTCAGCCGGTCTGAAGGCCGCAGAGACTaGCATGCCAGGAAGGTGGCTGCAGTGATGATGGGCAAGGGATGC | + |
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Preference number: 1 (lower is better) Translates to: NWAREQVSRSEGRRD*HARKVAAVMMGKGC Trigger: GCATCCCTTGCCCATCATCACTGCAGCCACCTTCCTGGCATGGCAGTCTCTGCGGCCTTCAGACCGGCTGACCTGCTCTCTTGCCCAGTT 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000211236.2 |
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| 3UTR CCA 90 bp | CATCTGAAGGAGCACGGCCAGGAGCTCCTGCAGGCGAGAGGCAGCTaGGTAGGGCAGGTCCACATTCGCCAATTTACAAAACTGGGCAAG | + |
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Preference number: 1 (lower is better) Translates to: HLKEHGQELLQARGS*VGQVHIRQFTKLGK Trigger: CTTGCCCAGTTTTGTAAATTGGCGAATGTGGACCTGCCCTACCCAGCTGCCTCTCGCCTGCAGGAGCTCCTGGCCGTGCTCCTTCAGATG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000211236.2 |
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| 3UTR TCA 90 bp | CACAAAACAGGAAAGACCCTCCCATCCTTTGAGACAGGCTCTGGGTaGAAGATGCCCGGGATCCAGCCCAGCCCGGTGTTCCTCCTAGAC | + |
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Preference number: 1 (lower is better) Translates to: HKTGKTLPSFETGSG*KMPGIQPSPVFLLD Trigger: GTCTAGGAGGAACACCGGGCTGGGCTGGATCCCGGGCATCTTTCACCCAGAGCCTGTCTCAAAGGATGGGAGGGTCTTTCCTGTTTTGTG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000210552.2 |
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| 3UTR TCA 90 bp | ATTCGCCAATTTACAAAACTGGGCAAGAGAGCAGGTCAGCCGGTCTaGAGGCCGCAGAGACTGCCATGCCAGGAAGGTGGCTGCAGTGAT | + |
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Preference number: 1 (lower is better) Translates to: IRQFTKLGKRAGQPV*RPQRLPCQEGGCSD Trigger: ATCACTGCAGCCACCTTCCTGGCATGGCAGTCTCTGCGGCCTTCAGACCGGCTGACCTGCTCTCTTGCCCAGTTTTGTAAATTGGCGAAT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000211236.2 |
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| 3UTR CCA 90 bp | GCTGTTCCATCTCGAAAAGCCGTTCGGACCAGCATGTGGCGGTGCTaGAGAAGGTCACCAATGTGTTTCACCACCGACCGCTTGTTAAGT | + |
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Preference number: 1 (lower is better) Translates to: AVPSRKAVRTSMWRC*RRSPMCFTTDRLLS Trigger: ACTTAACAAGCGGTCGGTGGTGAAACACATTGGTGACCTTCTCCAGCACCGCCACATGCTGGTCCGAACGGCTTTTCGAGATGGAACAGC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000211236.2 |
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| 3UTR GCA 90 bp | AGCTTCAGAATCCGACACAGGTCTCTTACTCGACGGAGATCTCGTTaGTGGCAGCGACTAACTTGTTCGTTTTCCCCAGTGCTTCGAGAA | + |
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Preference number: 1 (lower is better) Translates to: SFRIRHRSLTRRRSR*WQRLTCSFSPVLRE Trigger: TTCTCGAAGCACTGGGGAAAACGAACAAGTTAGTCGCTGCCAGCAACGAGATCTCCGTCGAGTAAGAGACCTGTGTCGGATTCTGAAGCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000209770.2 ENSMUST00000210552.2 ENSMUST00000211151.2 |
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| 3UTR CCA 90 bp | TACCCACCCAATGCCAGACACCGTTGTAGGTACTGGGAAATCAGATaGATCGCACCCTCCTCCAGCTCATCTGTTTACTTAAGCCCAATT | + |
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Preference number: 1 (lower is better) Translates to: YPPNARHRCRYWEIR*IAPSSSSSVYLSPI Trigger: AATTGGGCTTAAGTAAACAGATGAGCTGGAGGAGGGTGCGATCCATCTGATTTCCCAGTACCTACAACGGTGTCTGGCATTGGGTGGGTA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000210552.2 |
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| 3UTR TCA 90 bp | CAACAAATTACCCAGCTGGCCTTCGTTCACCTCCTCCTTGCCCTCTaGCTGCATAAGGCCAGGGAGATTTCAAATGACTGTGTATCTACT | + |
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Preference number: 1 (lower is better) Translates to: QQITQLAFVHLLLAL*LHKAREISNDCVST Trigger: AGTAGATACACAGTCATTTGAAATCTCCCTGGCCTTATGCAGTCAGAGGGCAAGGAGGAGGTGAACGAAGGCCAGCTGGGTAATTTGTTG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000210552.2 |
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| 3UTR CCA 90 bp | GTCACTTCCAATGCCAGACACCGTTGTAGGTACTGGGAAATCAGATaGATCGCACCCTCCTCCAGCTCATCTGTTTACTTAAGCCCAATT | + |
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Preference number: 1 (lower is better) Translates to: VTSNARHRCRYWEIR*IAPSSSSSVYLSPI Trigger: AATTGGGCTTAAGTAAACAGATGAGCTGGAGGAGGGTGCGATCCATCTGATTTCCCAGTACCTACAACGGTGTCTGGCATTGGAAGTGAC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000211151.2 |
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| 3UTR CCA 90 bp | TTCAGAATCCGACACAGGTCTCTTACTCGACGGAGATCTCGTTGCTaGCAGCGACTAACTTGTTCGTTTTCCCCAGTGCTTCGAGAATAT | + |
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Preference number: 1 (lower is better) Translates to: FRIRHRSLTRRRSRC*QRLTCSFSPVLREY Trigger: ATATTCTCGAAGCACTGGGGAAAACGAACAAGTTAGTCGCTGCCAGCAACGAGATCTCCGTCGAGTAAGAGACCTGTGTCGGATTCTGAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000209770.2 ENSMUST00000210552.2 ENSMUST00000211151.2 |
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| 3UTR GCA 90 bp | AAATTACCCAGCTGGCCTTCGTTCACCTCCTCCTTGCCCTCTGACTaGATAAGGCCAGGGAGATTTCAAATGACTGTGTATCTACTTCTA | + |
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Preference number: 1 (lower is better) Translates to: KLPSWPSFTSSLPSD*IRPGRFQMTVYLLL Trigger: TAGAAGTAGATACACAGTCATTTGAAATCTCCCTGGCCTTATGCAGTCAGAGGGCAAGGAGGAGGTGAACGAAGGCCAGCTGGGTAATTT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000210552.2 |
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| 3UTR CAA 90 bp | TGGCGGTGCTGGAGAAGGTCACCAATGTGTTTCACCACCGACCGCTaGTTAAGTTTTAGAACCTGTAGCCAGGCCAGCTGGCCGGCCATC | + |
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Preference number: 2 (lower is better) Translates to: WRCWRRSPMCFTTDR*LSFRTCSQASWPAI Trigger: GATGGCCGGCCAGCTGGCCTGGCTACAGGTTCTAAAACTTAACAAGCGGTCGGTGGTGAAACACATTGGTGACCTTCTCCAGCACCGCCA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000211236.2 |
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| 3UTR-3UTR CCA 90 bp | AGCAGTGTGCAGATGGTTCCCATGGTGAGGGGCCAGTTATGTTGCCGACAGGTGCGGAGATCTCGTTGCTaGCAGCGACTAACTTGTTCG | + |
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Preference number: 2 (lower is better) Translates to: SSVQMVPMVRGQLCCRQVRRSRC*QRLTCS Trigger: CGAACAAGTTAGTCGCTGCCAGCAACGAGATCTCCG...CACCTGTCGGCAACATAACTGGCCCCTCACCATGGGAACCATCTGCACACTGCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000210552.2 ENSMUST00000211151.2 |
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| 3UTR-3UTR TCA 90 bp | GCACATCCAGCCCCAGGAGCTTTACCATCTGCATGTAGGTGCCAGAAAACAAGTAGATGGTTCCCATGGTaGGGGGCCAGTTATGTTGCC | + |
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Preference number: 2 (lower is better) Translates to: AHPAPGALPSACRCQKTSRWFPW*GASYVA Trigger: GGCAACATAACTGGCCCCTCACCATGGGAACCATCT...ACTTGTTTTCTGGCACCTACATGCAGATGGTAAAGCTCCTGGGGCTGGATGTGC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000210552.2 ENSMUST00000211151.2 |
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| 3UTR-3UTR GCA 90 bp | GGCATAGAGCAGTGTGCAGATGGTTCCCATGGTGAGGGGCCAGTTATGTTGCCGCCCAGACAGCTGATATaGCTTCTGGTAGTAGGAGAT | + |
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Preference number: 2 (lower is better) Translates to: GIEQCADGSHGEGPVMLPPRQLI*LLVVGD Trigger: ATCTCCTACTACCAGAAGGCATATCAGCTGTCTGGG...CGGCAACATAACTGGCCCCTCACCATGGGAACCATCTGCACACTGCTCTATGCC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000210552.2 ENSMUST00000211151.2 |
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| 3UTR CAA 90 bp | CAGCTTCAGAATCCGACACAGGTCTCTTACTCGACGGAGATCTCGTaGCTGGCAGCGACTAACTTGTTCGTTTTCCCCAGTGCTTCGAGA | + |
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Preference number: 2 (lower is better) Translates to: QLQNPTQVSYSTEIS*LAATNLFVFPSASR Trigger: TCTCGAAGCACTGGGGAAAACGAACAAGTTAGTCGCTGCCAGCAACGAGATCTCCGTCGAGTAAGAGACCTGTGTCGGATTCTGAAGCTG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000209770.2 ENSMUST00000210552.2 ENSMUST00000211151.2 |
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| 3UTR CAA 90 bp | ATTGCATTAGTAGTAAGCACAAAACAGGAAAGACCCTCCCATCCTTaGAGACAGGCTCTGGGTGAAAGATGCCCGGGATCCAGCCCAGCC | + |
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Preference number: 2 (lower is better) Translates to: IALVVSTKQERPSHP*RQALGERCPGSSPA Trigger: GGCTGGGCTGGATCCCGGGCATCTTTCACCCAGAGCCTGTCTCAAAGGATGGGAGGGTCTTTCCTGTTTTGTGCTTACTACTAATGCAAT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000210552.2 |
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| 3UTR-3UTR CCA 90 bp | AAACCGCCTATATGCAGGATGGTCTTAGGGGACTCCTGTGAAAGATTCTGTGGACCTTCTTCTGCAGCCTaGCAGCTCGGATCCCAGACA | + |
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Preference number: 2 (lower is better) Translates to: KPPICRMVLGDSCERFCGPSSAA*QLGSQT Trigger: TGTCTGGGATCCGAGCTGCCAGGCTGCAGAAGAAGG...TCCACAGAATCTTTCACAGGAGTCCCCTAAGACCATCCTGCATATAGGCGGTTT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000210552.2 |
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| 3UTR CAA 90 bp | CAGCTCGGATCCCAGACAGCTGATATGCCTTCTGGTAGTAGGAGATaGCTGTATCCTCAAACGTTAGCGGCAGCTTCAGAATCCGACACA | + |
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Preference number: 2 (lower is better) Translates to: QLGSQTADMPSGSRR*LYPQTLAAASESDT Trigger: TGTGTCGGATTCTGAAGCTGCCGCTAACGTTTGAGGATACAGCAATCTCCTACTACCAGAAGGCATATCAGCTGTCTGGGATCCGAGCTG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000210552.2 ENSMUST00000211151.2 |
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| 3UTR-3UTR TCA 90 bp | AGTAGGAGATTGCTGTATCCTCAAACGTTAGCGGCAGCTTCAGAATCCGACACAAGATGGTTCCCATGGTaGGGGGCCAGTTATGTTGCC | + |
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Preference number: 2 (lower is better) Translates to: SRRLLYPQTLAAASESDTRWFPW*GASYVA Trigger: GGCAACATAACTGGCCCCTCACCATGGGAACCATCT...TGTGTCGGATTCTGAAGCTGCCGCTAACGTTTGAGGATACAGCAATCTCCTACT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000210552.2 ENSMUST00000211151.2 |
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| 3UTR CAA 90 bp | CAGGTCTCTTACTCGACGGAGATCTCGTTGCTGGCAGCGACTAACTaGTTCGTTTTCCCCAGTGCTTCGAGAATATGTCACTTCCAATGC | + |
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Preference number: 2 (lower is better) Translates to: QVSYSTEISLLAATN*FVFPSASRICHFQC Trigger: GCATTGGAAGTGACATATTCTCGAAGCACTGGGGAAAACGAACAAGTTAGTCGCTGCCAGCAACGAGATCTCCGTCGAGTAAGAGACCTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000211151.2 |
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| 3UTR CAA 90 bp | ATAGCAAACAACAAATTACCCAGCTGGCCTTCGTTCACCTCCTCCTaGCCCTCTGACTGCATAAGGCCAGGGAGATTTCAAATGACTGTG | + |
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Preference number: 2 (lower is better) Translates to: IANNKLPSWPSFTSS*PSDCIRPGRFQMTV Trigger: CACAGTCATTTGAAATCTCCCTGGCCTTATGCAGTCAGAGGGCAAGGAGGAGGTGAACGAAGGCCAGCTGGGTAATTTGTTGTTTGCTAT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000210552.2 |
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| 3UTR-3UTR GCA 90 bp | ACTTCCCTACCCCACCACCATAGTCATCGCATCTGCCTCCCATCTTCTCTAGGACCAAGAGTCATTTCTTaGAACACAACAGGCCTGTTA | + |
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Preference number: 2 (lower is better) Translates to: TSLPHHHSHRICLPSSLGPRVIS*NTTGLL Trigger: TAACAGGCCTGTTGTGTTGCAAGAAATGACTCTTGG...TCCTAGAGAAGATGGGAGGCAGATGCGATGACTATGGTGGTGGGGTAGGGAAGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033877.6 |
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| 3UTR-3UTR GCA 90 bp | ATCGGCATAGAGCAGTGTGCAGATGGTTCCCATGGTGAGGGGCCAGTTATGTTGGTTCGTTTTCCCCAGTaGTTCGAGAATATGTCACTT | + |
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Preference number: 2 (lower is better) Translates to: IGIEQCADGSHGEGPVMLVRFPQ*FENMSL Trigger: AAGTGACATATTCTCGAAGCACTGGGGAAAACGAAC...CAACATAACTGGCCCCTCACCATGGGAACCATCTGCACACTGCTCTATGCCGAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000210552.2 ENSMUST00000211151.2 |
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| 3UTR CAA 90 bp | CAGGTCTCTTACTCGACGGAGATCTCGTTGCTGGCAGCGACTAACTaGTTCGTTTTCCCCAGTGCTTCGAGAATATGTCACTTCTGTAAA | + |
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Preference number: 2 (lower is better) Translates to: QVSYSTEISLLAATN*FVFPSASRICHFCK Trigger: TTTACAGAAGTGACATATTCTCGAAGCACTGGGGAAAACGAACAAGTTAGTCGCTGCCAGCAACGAGATCTCCGTCGAGTAAGAGACCTG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000210552.2 |
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| 3UTR-3UTR CCA 90 bp | GCTTTACCATCTGCATGTAGGTGCCAGAAAACAAGTCCAGATCGGCATAGAGCACACCGTTGTAGGTACTaGGAAATCAGATGGATCGCA | + |
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Preference number: 2 (lower is better) Translates to: ALPSACRCQKTSPDRHRAHRCRY*EIRWIA Trigger: TGCGATCCATCTGATTTCCCAGTACCTACAACGGTG...TGCTCTATGCCGATCTGGACTTGTTTTCTGGCACCTACATGCAGATGGTAAAGC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000210552.2 ENSMUST00000211151.2 |
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| 3UTR-3UTR GCA 90 bp | TCCTTAACAGTCTTAGGAAGGATTCATCCTGGACTGTATAGACAGCTGGCTCAGCTTGGTCCAATTAACTaGAAGGCTACTCTTGGTTTC | + |
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Preference number: 2 (lower is better) Translates to: SLTVLGRIHPGLYRQLAQLGPIN*KATLGF Trigger: GAAACCAAGAGTAGCCTTGCAGTTAATTGGACCAAG...CTGAGCCAGCTGTCTATACAGTCCAGGATGAATCCTTCCTAAGACTGTTAAGGA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033877.6 |
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| 3UTR-3UTR TCA 90 bp | ATTGCATTAGTAGTAAGCACAAAACAGGAAAGACCCTCCCATCCTTTGAGACAGCAGGGAGATTTCAAATaGCTGTGTATCTACTTCTAC | + |
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Preference number: 2 (lower is better) Translates to: IALVVSTKQERPSHPLRQQGDFK*LCIYFY Trigger: GTAGAAGTAGATACACAGTCATTTGAAATCTCCCTG...CTGTCTCAAAGGATGGGAGGGTCTTTCCTGTTTTGTGCTTACTACTAATGCAAT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000210552.2 |
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| 3UTR-3UTR CCA 90 bp | GTATCTACTTCTACCTCAGAGAAGATACCCATCTATGTAAAAGTAATAGGACAGCACCGTTGTAGGTACTaGGAAATCAGATGGATCGCA | + |
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Preference number: 2 (lower is better) Translates to: VSTSTSEKIPIYVKVIGQHRCRY*EIRWIA Trigger: TGCGATCCATCTGATTTCCCAGTACCTACAACGGTG...CTGTCCTATTACTTTTACATAGATGGGTATCTTCTCTGAGGTAGAAGTAGATAC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000210552.2 |
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| 3UTR GCA 72 bp | AGAGAGCAGGTCAGCCGGTCTGAAGGCCGCAGAGACTaGCATGCCAGGAAGGTGGCTGCAGTGATGATGGGC | + |
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Preference number: 3 (lower is better) Translates to: REQVSRSEGRRD*HARKVAAVMMG Trigger: GCCCATCATCACTGCAGCCACCTTCCTGGCATGGCAGTCTCTGCGGCCTTCAGACCGGCTGACCTGCTCTCT 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000211236.2 |
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| 3UTR TCA 72 bp | GGAAAGACCCTCCCATCCTTTGAGACAGGCTCTGGGTaGAAGATGCCCGGGATCCAGCCCAGCCCGGTGTTC | + |
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Preference number: 3 (lower is better) Translates to: GKTLPSFETGSG*KMPGIQPSPVF Trigger: GAACACCGGGCTGGGCTGGATCCCGGGCATCTTTCACCCAGAGCCTGTCTCAAAGGATGGGAGGGTCTTTCC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000210552.2 |
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| 3UTR TCA 72 bp | TTTACAAAACTGGGCAAGAGAGCAGGTCAGCCGGTCTaGAGGCCGCAGAGACTGCCATGCCAGGAAGGTGGC | + |
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Preference number: 3 (lower is better) Translates to: FTKLGKRAGQPV*RPQRLPCQEGG Trigger: GCCACCTTCCTGGCATGGCAGTCTCTGCGGCCTTCAGACCGGCTGACCTGCTCTCTTGCCCAGTTTTGTAAA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000211236.2 |
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| 3UTR TCA 72 bp | ACCGCCTATATGCAGGATGGTCTTAGGGGACTCCTGTaGAAGATTCTGTGGACACCACGGCGGTCACCACCC | + |
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Preference number: 3 (lower is better) Translates to: TAYMQDGLRGLL*KILWTPRRSPP Trigger: GGGTGGTGACCGCCGTGGTGTCCACAGAATCTTTCACAGGAGTCCCCTAAGACCATCCTGCATATAGGCGGT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000210552.2 |
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| 3UTR GCA 72 bp | CCATCTCGAAAAGCCGTTCGGACCAGCATGTGGCGGTaGTGGAGAAGGTCACCAATGTGTTTCACCACCGAC | + |
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Preference number: 3 (lower is better) Translates to: PSRKAVRTSMWR*WRRSPMCFTTD Trigger: GTCGGTGGTGAAACACATTGGTGACCTTCTCCAGCACCGCCACATGCTGGTCCGAACGGCTTTTCGAGATGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000211236.2 |
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| 3UTR CCA 72 bp | GACACCAGCCAGGAACTGCTGCTCCTGCTCATGGAATaGTTGATAGCACTAGGATGCAGCTCGTTCACCCCA | + |
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Preference number: 3 (lower is better) Translates to: DTSQELLLLLME*LIALGCSSFTP Trigger: TGGGGTGAACGAGCTGCATCCTAGTGCTATCAACCATTCCATGAGCAGGAGCAGCAGTTCCTGGCTGGTGTC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033877.6 |
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| 3UTR CCA 72 bp | GCTGTTCCATCTCGAAAAGCCGTTCGGACCAGCATGTaGCGGTGCTGGAGAAGGTCACCAATGTGTTTCACC | + |
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Preference number: 3 (lower is better) Translates to: AVPSRKAVRTSM*RCWRRSPMCFT Trigger: GGTGAAACACATTGGTGACCTTCTCCAGCACCGCCACATGCTGGTCCGAACGGCTTTTCGAGATGGAACAGC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000211236.2 |
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| 3UTR CCA 72 bp | ACCACCCACCGGTTGAGAACCGCTGTACTAGAGCAATaGCGTGGAACGCAGAGGAGAGCAAGTTGCCAATTA | + |
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Preference number: 3 (lower is better) Translates to: TTHRLRTAVLEQ*RGTQRRASCQL Trigger: TAATTGGCAACTTGCTCTCCTCTGCGTTCCACGCCATTGCTCTAGTACAGCGGTTCTCAACCGGTGGGTGGT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000210552.2 |
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| 3UTR-3UTR CAA 90 bp | CCCCACCACCATAGTCATCGCATCTGCCTCCCATCTTCTCTAGGACCTTGGTCCGCCAAGAGTCATTTCTaGCAACACAACAGGCCTGTT | + |
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Preference number: 3 (lower is better) Translates to: PHHHSHRICLPSSLGPWSAKSHF*QHNRPV Trigger: AACAGGCCTGTTGTGTTGCAAGAAATGACTCTTGGC...GGACCAAGGTCCTAGAGAAGATGGGAGGCAGATGCGATGACTATGGTGGTGGGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033877.6 |
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| 3UTR-3UTR CAA 90 bp | ATAGAGCAGTGTGCAGATGGTTCCCATGGTGAGGGGCCAGTTATGTTGCCGACACTGGCAGCGACTAACTaGTTCGTTTTCCCCAGTGCT | + |
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Preference number: 3 (lower is better) Translates to: IEQCADGSHGEGPVMLPTLAATN*FVFPSA Trigger: AGCACTGGGGAAAACGAACAAGTTAGTCGCTGCCAG...TGTCGGCAACATAACTGGCCCCTCACCATGGGAACCATCTGCACACTGCTCTAT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000210552.2 ENSMUST00000211151.2 |
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| 3UTR GCA 72 bp | ATCCGACACAGGTCTCTTACTCGACGGAGATCTCGTTaGTGGCAGCGACTAACTTGTTCGTTTTCCCCAGTG | + |
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Preference number: 3 (lower is better) Translates to: IRHRSLTRRRSR*WQRLTCSFSPV Trigger: CACTGGGGAAAACGAACAAGTTAGTCGCTGCCAGCAACGAGATCTCCGTCGAGTAAGAGACCTGTGTCGGAT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000209770.2 ENSMUST00000210552.2 ENSMUST00000211151.2 |
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| 3UTR GCA 72 bp | CTGCAGCCTGGCAGCTCGGATCCCAGACAGCTGATATaGCTTCTGGTAGTAGGAGATTGCTGTATCCTCAAA | + |
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Preference number: 3 (lower is better) Translates to: LQPGSSDPRQLI*LLVVGDCCILK Trigger: TTTGAGGATACAGCAATCTCCTACTACCAGAAGGCATATCAGCTGTCTGGGATCCGAGCTGCCAGGCTGCAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000210552.2 ENSMUST00000211151.2 |
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| 3UTR CCA 72 bp | CGACACAGGTCTCTTACTCGACGGAGATCTCGTTGCTaGCAGCGACTAACTTGTTCGTTTTCCCCAGTGCTT | + |
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Preference number: 3 (lower is better) Translates to: RHRSLTRRRSRC*QRLTCSFSPVL Trigger: AAGCACTGGGGAAAACGAACAAGTTAGTCGCTGCCAGCAACGAGATCTCCGTCGAGTAAGAGACCTGTGTCG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000209770.2 ENSMUST00000210552.2 ENSMUST00000211151.2 |
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| 3UTR GCA 72 bp | GTGCAGATGGTTCCCATGGTGAGGGGCCAGTTATGTTaGCGACAGGTGATTAAAACACAGCATCCGACTAAC | + |
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Preference number: 3 (lower is better) Translates to: VQMVPMVRGQLC*RQVIKTQHPTN Trigger: GTTAGTCGGATGCTGTGTTTTAATCACCTGTCGGCAACATAACTGGCCCCTCACCATGGGAACCATCTGCAC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000210552.2 ENSMUST00000211151.2 |
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| 3UTR CCA 72 bp | AATGCCAGACACCGTTGTAGGTACTGGGAAATCAGATaGATCGCACCCTCCTCCAGCTCATCTGTTTACTTA | + |
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Preference number: 3 (lower is better) Translates to: NARHRCRYWEIR*IAPSSSSSVYL Trigger: TAAGTAAACAGATGAGCTGGAGGAGGGTGCGATCCATCTGATTTCCCAGTACCTACAACGGTGTCTGGCATT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000210552.2 ENSMUST00000211151.2 |
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| 3UTR CCA 72 bp | ACTTTTGAGGGCTGCATTAGCCAAGGGCTAGAGCAGTaGTTCTCAACCTTCCTAATGCTGCCACCCTTTAAT | + |
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Preference number: 3 (lower is better) Translates to: TFEGCISQGLEQ*FSTFLMLPPFN Trigger: ATTAAAGGGTGGCAGCATTAGGAAGGTTGAGAACCACTGCTCTAGCCCTTGGCTAATGCAGCCCTCAAAAGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000210552.2 |
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| 3UTR-3UTR CAA 90 bp | CAGACAGACTCCTTAACAGTCTTAGGAAGGATTCATCCTGGACTGTATAGACAGATCTTCTCTAGGACCTaGGTCCAATTAACTGCAAGG | + |
|
Preference number: 3 (lower is better) Translates to: QTDSLTVLGRIHPGLYRQIFSRT*VQLTAR Trigger: CCTTGCAGTTAATTGGACCAAGGTCCTAGAGAAGAT...CTGTCTATACAGTCCAGGATGAATCCTTCCTAAGACTGTTAAGGAGTCTGTCTG 44% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033877.6 |
||
| 3UTR GCA 72 bp | TCCAATAATTTCTCTGATACATTCACTTTTGAGGGCTaGATTAGCCAAGGGCTAGAGCAGTGGTTCTCAACC | + |
|
Preference number: 3 (lower is better) Translates to: SNNFSDTFTFEG*ISQGLEQWFST Trigger: GGTTGAGAACCACTGCTCTAGCCCTTGGCTAATGCAGCCCTCAAAAGTGAATGTATCAGAGAAATTATTGGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000210552.2 |
||
| 3UTR-3UTR CAA 90 bp | CAGACAGACTCCTTAACAGTCTTAGGAAGGATTCATCCTGGACTGTATAGACAGAGGCCTGTTAATAAATaGCAGTCAGAACTGAAGACA | + |
|
Preference number: 3 (lower is better) Translates to: QTDSLTVLGRIHPGLYRQRPVNK*QSELKT Trigger: TGTCTTCAGTTCTGACTGCAATTTATTAACAGGCCT...CTGTCTATACAGTCCAGGATGAATCCTTCCTAAGACTGTTAAGGAGTCTGTCTG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033877.6 |
||
| 3UTR TCA 72 bp | TTATTTTCAAATAATTTACCGGCACTCCTTCAACACTaGCTAGGTCTGACAAGACGAATGAAACCTTTATCG | + |
|
Preference number: 3 (lower is better) Translates to: LFSNNLPALLQH*LGLTRRMKPLS Trigger: CGATAAAGGTTTCATTCGTCTTGTCAGACCTAGTCAGTGTTGAAGGAGTGCCGGTAAATTATTTGAAAATAA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000210552.2 |
||
| 3UTR TCA 72 bp | GCAAGTTGCCAATTAGTGCTAAAACCTGCTAGGAGATaGTGGTTCGTGTTGTTATTTTCAAATAATTTACCG | + |
|
Preference number: 3 (lower is better) Translates to: ASCQLVLKPARR*WFVLLFSNNLP Trigger: CGGTAAATTATTTGAAAATAACAACACGAACCATCATCTCCTAGCAGGTTTTAGCACTAATTGGCAACTTGC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000210552.2 |
||
| CDS-3UTR GCA 90 bp | GGGTCAGGACTTCCCTACCCCACCACCATAGTCATCGCATCTGCCTCCCATCTTACGGCCAGGAGCTCCTaGAGGCGAGAGGCAGCTGGG | + |
|
Preference number: 4 (lower is better) Translates to: GSGLPYPTTIVIASASHLTARSS*RREAAG Trigger: CCCAGCTGCCTCTCGCCTGCAGGAGCTCCTGGCCGT...AAGATGGGAGGCAGATGCGATGACTATGGTGGTGGGGTAGGGAAGTCCTGACCC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033877.6 |
||
| CDS-3UTR CCA 90 bp | TGGGCAAGAGAGCAGGTCAGCCGGTCTGAAGGCCGCAGAGACTGCCATGCCAGGTTCCACGTATTTGGCTaGCACGGACGGGGACGCTTG | + |
|
Preference number: 4 (lower is better) Translates to: WAREQVSRSEGRRDCHARFHVFG*HGRGRL Trigger: CAAGCGTCCCCGTCCGTGCCAGCCAAATACGTGGAA...CCTGGCATGGCAGTCTCTGCGGCCTTCAGACCGGCTGACCTGCTCTCTTGCCCA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000211236.2 |
||
| CDS-3UTR TCA 90 bp | ACTTCCCTACCCCACCACCATAGTCATCGCATCTGCCTCCCATCTTCTCTAGGATTAGGACCCCTTCGGTaGCCACGCAGCCGCAGTCGG | + |
|
Preference number: 4 (lower is better) Translates to: TSLPHHHSHRICLPSSLGLGPLR*PRSRSR Trigger: CCGACTGCGGCTGCGTGGTCACCGAAGGGGTCCTAA...TCCTAGAGAAGATGGGAGGCAGATGCGATGACTATGGTGGTGGGGTAGGGAAGT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033877.6 |
||
| CDS-3UTR TCA 90 bp | ACGGAGATCTCGTTGCTGGCAGCGACTAACTTGTTCGTTTTCCCCAGTGCTTCGTTAGGACCCCTTCGGTaGCCACGCAGCCGCAGTCGG | + |
|
Preference number: 4 (lower is better) Translates to: TEISLLAATNLFVFPSASLGPLR*PRSRSR Trigger: CCGACTGCGGCTGCGTGGTCACCGAAGGGGTCCTAA...CGAAGCACTGGGGAAAACGAACAAGTTAGTCGCTGCCAGCAACGAGATCTCCGT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 3 transcripts: ENSMUST00000209770.2 ENSMUST00000210552.2 ENSMUST00000211151.2 |
||
| CDS-3UTR GCA 90 bp | CTCAGTGACCTGCACCACGGGTCAGGACTTCCCTACCCCACCACCATAGTCATCACCAGCATGTGGCGGTaGTGGAGAAGGTCACCAATG | + |
|
Preference number: 4 (lower is better) Translates to: LSDLHHGSGLPYPTTIVITSMWR*WRRSPM Trigger: CATTGGTGACCTTCTCCAGCACCGCCACATGCTGGT...GATGACTATGGTGGTGGGGTAGGGAAGTCCTGACCCGTGGTGCAGGTCACTGAG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033877.6 |
||
| CDS-3UTR CCA 90 bp | CCCCACCACCATAGTCATCGCATCTGCCTCCCATCTTCTCTAGGACCTTGGTCCTTCCACGTATTTGGCTaGCACGGACGGGGACGCTTG | + |
|
Preference number: 4 (lower is better) Translates to: PHHHSHRICLPSSLGPWSFHVFG*HGRGRL Trigger: CAAGCGTCCCCGTCCGTGCCAGCCAAATACGTGGAA...GGACCAAGGTCCTAGAGAAGATGGGAGGCAGATGCGATGACTATGGTGGTGGGG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033877.6 |
||
| CDS-3UTR GCA 90 bp | CTCAGTGACCTGCACCACGGGTCAGGACTTCCCTACCCCACCACCATAGTCATCAACACTTCCTTCTTCTaGAGCCTGGCAGCTCGGATC | + |
|
Preference number: 4 (lower is better) Translates to: LSDLHHGSGLPYPTTIVINTSFF*SLAARI Trigger: GATCCGAGCTGCCAGGCTGCAGAAGAAGGAAGTGTT...GATGACTATGGTGGTGGGGTAGGGAAGTCCTGACCCGTGGTGCAGGTCACTGAG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033877.6 |
||
| CDS-3UTR GCA 90 bp | ACCAGACACCAGCCAGGAACTGCTGCTCCTGCTCATGGAATGGTTGATAGCACTTCCCCCACCTCGTCCTaGTGTCCTTGTCCTTGTCCC | + |
|
Preference number: 4 (lower is better) Translates to: TRHQPGTAAPAHGMVDSTSPTSS*CPCPCP Trigger: GGGACAAGGACAAGGACAGCAGGACGAGGTGGGGGA...AGTGCTATCAACCATTCCATGAGCAGGAGCAGCAGTTCCTGGCTGGTGTCTGGT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033877.6 |
||
| CDS-3UTR TCA 90 bp | TCTCGTTGCTGGCAGCGACTAACTTGTTCGTTTTCCCCAGTGCTTCGAGAATATTTAGGACCCCTTCGGTaGCCACGCAGCCGCAGTCGG | + |
|
Preference number: 4 (lower is better) Translates to: SRCWQRLTCSFSPVLREYLGPLR*PRSRSR Trigger: CCGACTGCGGCTGCGTGGTCACCGAAGGGGTCCTAA...ATATTCTCGAAGCACTGGGGAAAACGAACAAGTTAGTCGCTGCCAGCAACGAGA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 3 transcripts: ENSMUST00000209770.2 ENSMUST00000210552.2 ENSMUST00000211151.2 |
||
| CDS-3UTR TCA 90 bp | TCGTTGCTGGCAGCGACTAACTTGTTCGTTTTCCCCAGTGCTTCGAGAATATGTTTAGGACCCCTTCGGTaGCCACGCAGCCGCAGTCGG | + |
|
Preference number: 4 (lower is better) Translates to: SLLAATNLFVFPSASRICLGPLR*PRSRSR Trigger: CCGACTGCGGCTGCGTGGTCACCGAAGGGGTCCTAA...ACATATTCTCGAAGCACTGGGGAAAACGAACAAGTTAGTCGCTGCCAGCAACGA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 3 transcripts: ENSMUST00000209770.2 ENSMUST00000210552.2 ENSMUST00000211151.2 |
||
| CDS-3UTR GCA 90 bp | ACCAGACACCAGCCAGGAACTGCTGCTCCTGCTCATGGAATGGTTGATAGCACTTGCTGCTGCTGCTGCTaGTGGGTCTCCACTTCTGCT | + |
|
Preference number: 4 (lower is better) Translates to: TRHQPGTAAPAHGMVDSTCCCCC*WVSTSA Trigger: AGCAGAAGTGGAGACCCAGCAGCAGCAGCAGCAGCA...AGTGCTATCAACCATTCCATGAGCAGGAGCAGCAGTTCCTGGCTGGTGTCTGGT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033877.6 |
||
| 3UTR CAA 72 bp | ACCAGCCAGGAACTGCTGCTCCTGCTCATGGAATGGTaGATAGCACTAGGATGCAGCTCGTTCACCCCAGCA | + |
|
Preference number: 4 (lower is better) Translates to: TSQELLLLLMEW*IALGCSSFTPA Trigger: TGCTGGGGTGAACGAGCTGCATCCTAGTGCTATCAACCATTCCATGAGCAGGAGCAGCAGTTCCTGGCTGGT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033877.6 |
||
| CDS-3UTR CCA 90 bp | GTTGATAGCACTAGGATGCAGCTCGTTCACCCCAGCAATGCGTTTACTGCACACTGTCTTCCACGTATTTaGCTGGCACGGACGGGGACG | + |
|
Preference number: 4 (lower is better) Translates to: VDSTRMQLVHPSNAFTAHCLPRI*LARTGT Trigger: CGTCCCCGTCCGTGCCAGCCAAATACGTGGAAGACA...GTGTGCAGTAAACGCATTGCTGGGGTGAACGAGCTGCATCCTAGTGCTATCAAC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033877.6 |
||
| CDS-3UTR CCA 90 bp | CTCAGTGACCTGCACCACGGGTCAGGACTTCCCTACCCCACCACCATAGTCATCGCCAATTTACAAAACTaGGCAAGAGAGCAGGTCAGC | + |
|
Preference number: 4 (lower is better) Translates to: LSDLHHGSGLPYPTTIVIANLQN*AREQVS Trigger: GCTGACCTGCTCTCTTGCCCAGTTTTGTAAATTGGC...GATGACTATGGTGGTGGGGTAGGGAAGTCCTGACCCGTGGTGCAGGTCACTGAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033877.6 |
||
| CDS-3UTR CCA 90 bp | CTGCCTCCCATCTTCTCTAGGACCTTGGTCCAATTAACTGCAAGGCTACTCTTGCAGGCGAGAGGCAGCTaGGTAGGGCAGGTCCACATT | + |
|
Preference number: 4 (lower is better) Translates to: LPPIFSRTLVQLTARLLLQARGS*VGQVHI Trigger: AATGTGGACCTGCCCTACCCAGCTGCCTCTCGCCTG...CAAGAGTAGCCTTGCAGTTAATTGGACCAAGGTCCTAGAGAAGATGGGAGGCAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033877.6 |
||
| CDS-3UTR GCA 90 bp | ATGCGTTTACTGCACACTAGGGTAGAAGAGAGCTGGACAGACAGACTCCTTAACGAAGGCCGCAGAGACTaGCATGCCAGGAAGGTGGCT | + |
|
Preference number: 4 (lower is better) Translates to: MRLLHTRVEESWTDRLLNEGRRD*HARKVA Trigger: AGCCACCTTCCTGGCATGGCAGTCTCTGCGGCCTTC...GTTAAGGAGTCTGTCTGTCCAGCTCTCTTCTACCCTAGTGTGCAGTAAACGCAT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033877.6 |
||
| CDS-3UTR GCA 90 bp | CTGCCTCCCATCTTCTCTAGGACCTTGGTCCAATTAACTGCAAGGCTACTCTTGTGCTGCTGCTGCTGCTaGTGCTGGGTCTCCACTTCT | + |
|
Preference number: 4 (lower is better) Translates to: LPPIFSRTLVQLTARLLLCCCCC*CWVSTS Trigger: AGAAGTGGAGACCCAGCAGCAGCAGCAGCAGCAGCA...CAAGAGTAGCCTTGCAGTTAATTGGACCAAGGTCCTAGAGAAGATGGGAGGCAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033877.6 |
||
| CDS-3UTR CCA 90 bp | GTTGATAGCACTAGGATGCAGCTCGTTCACCCCAGCAATGCGTTTACTGCACACTGCTGCTGCTGCTGCTaGGTCTCCACTTCTGCTGTT | + |
|
Preference number: 4 (lower is better) Translates to: VDSTRMQLVHPSNAFTAHCCCCC*VSTSAV Trigger: AACAGCAGAAGTGGAGACCCAGCAGCAGCAGCAGCA...GTGTGCAGTAAACGCATTGCTGGGGTGAACGAGCTGCATCCTAGTGCTATCAAC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033877.6 |
||
| CDS-3UTR CCA 90 bp | ATGCGTTTACTGCACACTAGGGTAGAAGAGAGCTGGACAGACAGACTCCTTAACAGGTGTGGGTCCGCTTaGGGGGCTTCAACATGCAGG | + |
|
Preference number: 4 (lower is better) Translates to: MRLLHTRVEESWTDRLLNRCGSA*GASTCR Trigger: CCTGCATGTTGAAGCCCCCCAAGCGGACCCACACCT...GTTAAGGAGTCTGTCTGTCCAGCTCTCTTCTACCCTAGTGTGCAGTAAACGCAT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033877.6 |
||
| CDS-3UTR CCA 90 bp | ACCAGACACCAGCCAGGAACTGCTGCTCCTGCTCATGGAATGGTTGATAGCACTGCCTGGCTAGCAGCTTaGGCTCTCTCAAAGTCTCTA | + |
|
Preference number: 4 (lower is better) Translates to: TRHQPGTAAPAHGMVDSTAWLAA*ALSKSL Trigger: TAGAGACTTTGAGAGAGCCCAAGCTGCTAGCCAGGC...AGTGCTATCAACCATTCCATGAGCAGGAGCAGCAGTTCCTGGCTGGTGTCTGGT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033877.6 |
||
| CDS-3UTR TCA 90 bp | ATGCGTTTACTGCACACTAGGGTAGAAGAGAGCTGGACAGACAGACTCCTTAACAGATGGTTCCCATGGTaGGGGGCCAGTTATGTTGCC | + |
|
Preference number: 4 (lower is better) Translates to: MRLLHTRVEESWTDRLLNRWFPW*GASYVA Trigger: GGCAACATAACTGGCCCCTCACCATGGGAACCATCT...GTTAAGGAGTCTGTCTGTCCAGCTCTCTTCTACCCTAGTGTGCAGTAAACGCAT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033877.6 |
||
| CDS-3UTR TCA 90 bp | GTTGATAGCACTAGGATGCAGCTCGTTCACCCCAGCAATGCGTTTACTGCACACAAGTCTCTAACTTCCTaGGGGGTGCGCAAATACTGC | + |
|
Preference number: 4 (lower is better) Translates to: VDSTRMQLVHPSNAFTAHKSLTS*GVRKYC Trigger: GCAGTATTTGCGCACCCCTCAGGAAGTTAGAGACTT...GTGTGCAGTAAACGCATTGCTGGGGTGAACGAGCTGCATCCTAGTGCTATCAAC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000033877.6 |
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| CDS-3UTR GCA 90 bp | CCCCACCACCATAGTCATCGCATCTGCCTCCCATCTTCTCTAGGACCTTGGTCCGGGGTGCGCAAATACTaGTCTATTTCACTATCTGAA | + |
|
Preference number: 4 (lower is better) Translates to: PHHHSHRICLPSSLGPWSGVRKY*SISLSE Trigger: TTCAGATAGTGAAATAGAGCAGTATTTGCGCACCCC...GGACCAAGGTCCTAGAGAAGATGGGAGGCAGATGCGATGACTATGGTGGTGGGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033877.6 |
||
| CDS-3UTR CCA 90 bp | TGCTGGAGAAGGTCACCAATGTGTTTCACCACCGACCGCTTGTTAAGTTTTAGATGTCTTCCACGTATTTaGCTGGCACGGACGGGGACG | + |
|
Preference number: 4 (lower is better) Translates to: CWRRSPMCFTTDRLLSFRCLPRI*LARTGT Trigger: CGTCCCCGTCCGTGCCAGCCAAATACGTGGAAGACA...TCTAAAACTTAACAAGCGGTCGGTGGTGAAACACATTGGTGACCTTCTCCAGCA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000211236.2 |
||
| CDS-3UTR CCA 90 bp | TCCTTAACAGTCTTAGGAAGGATTCATCCTGGACTGTATAGACAGCTGGCTCAGGTTCGGACCAGCATGTaGCGGTGCTGGAGAAGGTCA | + |
|
Preference number: 4 (lower is better) Translates to: SLTVLGRIHPGLYRQLAQVRTSM*RCWRRS Trigger: TGACCTTCTCCAGCACCGCCACATGCTGGTCCGAAC...CTGAGCCAGCTGTCTATACAGTCCAGGATGAATCCTTCCTAAGACTGTTAAGGA 51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033877.6 |
||
| 3UTR CAA 72 bp | AATCCGACACAGGTCTCTTACTCGACGGAGATCTCGTaGCTGGCAGCGACTAACTTGTTCGTTTTCCCCAGT | + |
|
Preference number: 4 (lower is better) Translates to: NPTQVSYSTEIS*LAATNLFVFPS Trigger: ACTGGGGAAAACGAACAAGTTAGTCGCTGCCAGCAACGAGATCTCCGTCGAGTAAGAGACCTGTGTCGGATT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000209770.2 ENSMUST00000210552.2 ENSMUST00000211151.2 |
||
| 3UTR CAA 72 bp | TGGAGAAGGTCACCAATGTGTTTCACCACCGACCGCTaGTTAAGTTTTAGAACCTGTAGCCAGGCCAGCTGG | + |
|
Preference number: 4 (lower is better) Translates to: WRRSPMCFTTDR*LSFRTCSQASW Trigger: CCAGCTGGCCTGGCTACAGGTTCTAAAACTTAACAAGCGGTCGGTGGTGAAACACATTGGTGACCTTCTCCA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000211236.2 |
||
| 3UTR CAA 72 bp | AACAAATTACCCAGCTGGCCTTCGTTCACCTCCTCCTaGCCCTCTGACTGCATAAGGCCAGGGAGATTTCAA | + |
|
Preference number: 4 (lower is better) Translates to: NKLPSWPSFTSS*PSDCIRPGRFQ Trigger: TTGAAATCTCCCTGGCCTTATGCAGTCAGAGGGCAAGGAGGAGGTGAACGAAGGCCAGCTGGGTAATTTGTT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000210552.2 |
||
| 3UTR CAA 72 bp | TACTCGACGGAGATCTCGTTGCTGGCAGCGACTAACTaGTTCGTTTTCCCCAGTGCTTCGAGAATATGTCAC | + |
|
Preference number: 4 (lower is better) Translates to: YSTEISLLAATN*FVFPSASRICH Trigger: GTGACATATTCTCGAAGCACTGGGGAAAACGAACAAGTTAGTCGCTGCCAGCAACGAGATCTCCGTCGAGTA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000209770.2 ENSMUST00000210552.2 ENSMUST00000211151.2 |
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| CDS-3UTR GCA 90 bp | CTGCCTCCCATCTTCTCTAGGACCTTGGTCCAATTAACTGCAAGGCTACTCTTGCCCAGACAGCTGATATaGCTTCTGGTAGTAGGAGAT | + |
|
Preference number: 4 (lower is better) Translates to: LPPIFSRTLVQLTARLLLPRQLI*LLVVGD Trigger: ATCTCCTACTACCAGAAGGCATATCAGCTGTCTGGG...CAAGAGTAGCCTTGCAGTTAATTGGACCAAGGTCCTAGAGAAGATGGGAGGCAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033877.6 |
||
| CDS-3UTR GCA 90 bp | GTTGATAGCACTAGGATGCAGCTCGTTCACCCCAGCAATGCGTTTACTGCACACAGGGGCCAGTTATGTTaGCGACAGGTGATTAAAACA | + |
|
Preference number: 4 (lower is better) Translates to: VDSTRMQLVHPSNAFTAHRGQLC*RQVIKT Trigger: TGTTTTAATCACCTGTCGGCAACATAACTGGCCCCT...GTGTGCAGTAAACGCATTGCTGGGGTGAACGAGCTGCATCCTAGTGCTATCAAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000033877.6 |
||
| CDS-3UTR CCA 90 bp | CAGACAGACTCCTTAACAGTCTTAGGAAGGATTCATCCTGGACTGTATAGACAGACGGACGGGGACGCTTaGAACAGTTTGAAGCTGCTG | + |
|
Preference number: 4 (lower is better) Translates to: QTDSLTVLGRIHPGLYRQTDGDA*NSLKLL Trigger: CAGCAGCTTCAAACTGTTCCAAGCGTCCCCGTCCGT...CTGTCTATACAGTCCAGGATGAATCCTTCCTAAGACTGTTAAGGAGTCTGTCTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033877.6 |
||
| CDS-3UTR CCA 90 bp | TCCTTAACAGTCTTAGGAAGGATTCATCCTGGACTGTATAGACAGCTGGCTCAGAGCATGTGGCGGTGCTaGAGAAGGTCACCAATGTGT | + |
|
Preference number: 4 (lower is better) Translates to: SLTVLGRIHPGLYRQLAQSMWRC*RRSPMC Trigger: ACACATTGGTGACCTTCTCCAGCACCGCCACATGCT...CTGAGCCAGCTGTCTATACAGTCCAGGATGAATCCTTCCTAAGACTGTTAAGGA 49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033877.6 |
||
| CDS-3UTR CCA 90 bp | AAAAGAAAAGCCAAGAGTCATTTCTTGCAACACAACAGGCCTGTTAATAAATTGGGGGCAGGAGGGGAGTaGGACTGGCGGGACGTTTCC | + |
|
Preference number: 4 (lower is better) Translates to: KRKAKSHFLQHNRPVNKLGAGGE*DWRDVS Trigger: GGAAACGTCCCGCCAGTCCCACTCCCCTCCTGCCCC...CAATTTATTAACAGGCCTGTTGTGTTGCAAGAAATGACTCTTGGCTTTTCTTTT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000033877.6 |
||
| 3UTR CAA 72 bp | TCCCAGACAGCTGATATGCCTTCTGGTAGTAGGAGATaGCTGTATCCTCAAACGTTAGCGGCAGCTTCAGAA | + |
|
Preference number: 4 (lower is better) Translates to: SQTADMPSGSRR*LYPQTLAAASE Trigger: TTCTGAAGCTGCCGCTAACGTTTGAGGATACAGCAATCTCCTACTACCAGAAGGCATATCAGCTGTCTGGGA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000210552.2 ENSMUST00000211151.2 |
||
| CDS-3UTR TCA 90 bp | GTAGGGCAGGTCCACATTCGCCAATTTACAAAACTGGGCAAGAGAGCAGGTCAGACGCTTGGAACAGTTTaGAGCATTAACTGGCATCTT | + |
|
Preference number: 4 (lower is better) Translates to: VGQVHIRQFTKLGKRAGQTLGTV*SINWHL Trigger: AAGATGCCAGTTAATGCTTCAAACTGTTCCAAGCGT...CTGACCTGCTCTCTTGCCCAGTTTTGTAAATTGGCGAATGTGGACCTGCCCTAC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000211236.2 |
||
| CDS-3UTR TCA 90 bp | CTGCCTCCCATCTTCTCTAGGACCTTGGTCCAATTAACTGCAAGGCTACTCTTGCTCTATTTCACTATCTaGAATATCCTCATCGCCAGT | + |
|
Preference number: 4 (lower is better) Translates to: LPPIFSRTLVQLTARLLLLYFTI*NILIAS Trigger: ACTGGCGATGAGGATATTTCAGATAGTGAAATAGAG...CAAGAGTAGCCTTGCAGTTAATTGGACCAAGGTCCTAGAGAAGATGGGAGGCAG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033877.6 |
||
| CDS-3UTR CCA 90 bp | AAGCCAAGAGTCATTTCTTGCAACACAACAGGCCTGTTAATAAATTGCAGTCAGCGGAGATCTCGTTGCTaGCAGCGACTAACTTGTTCG | + |
|
Preference number: 4 (lower is better) Translates to: KPRVISCNTTGLLINCSQRRSRC*QRLTCS Trigger: CGAACAAGTTAGTCGCTGCCAGCAACGAGATCTCCG...CTGACTGCAATTTATTAACAGGCCTGTTGTGTTGCAAGAAATGACTCTTGGCTT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033877.6 |
||
| CDS-3UTR GCA 90 bp | CAGACAGACTCCTTAACAGTCTTAGGAAGGATTCATCCTGGACTGTATAGACAGCCATCTGCATGTAGGTaGCAGAAAACAAGTCCAGAT | + |
|
Preference number: 4 (lower is better) Translates to: QTDSLTVLGRIHPGLYRQPSACR*QKTSPD Trigger: ATCTGGACTTGTTTTCTGGCACCTACATGCAGATGG...CTGTCTATACAGTCCAGGATGAATCCTTCCTAAGACTGTTAAGGAGTCTGTCTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033877.6 |
||
| CDS-3UTR CCA 90 bp | AAAAGAAAAGCCAAGAGTCATTTCTTGCAACACAACAGGCCTGTTAATAAATTGCCTTCTTCTGCAGCCTaGCAGCTCGGATCCCAGACA | + |
|
Preference number: 4 (lower is better) Translates to: KRKAKSHFLQHNRPVNKLPSSAA*QLGSQT Trigger: TGTCTGGGATCCGAGCTGCCAGGCTGCAGAAGAAGG...CAATTTATTAACAGGCCTGTTGTGTTGCAAGAAATGACTCTTGGCTTTTCTTTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033877.6 |
||
| CDS-3UTR GCA 90 bp | AAGCCAAGAGTCATTTCTTGCAACACAACAGGCCTGTTAATAAATTGCAGTCAGGTTCGTTTTCCCCAGTaGTTCGAGAATATGTCACTT | + |
|
Preference number: 4 (lower is better) Translates to: KPRVISCNTTGLLINCSQVRFPQ*FENMSL Trigger: AAGTGACATATTCTCGAAGCACTGGGGAAAACGAAC...CTGACTGCAATTTATTAACAGGCCTGTTGTGTTGCAAGAAATGACTCTTGGCTT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033877.6 |
||
| CDS CCA 90 bp | GGCTGGAAAGAGGGAGCTGGGTTTAAGGACTCCACCGCCCAAGGCTaGCGATCCCCGGGTTCAAGACCAGTACCCCTGAAGTTGCCCTCG | + |
|
Preference number: 5 (lower is better) Translates to: GWKEGAGFKDSTAQG*RSPGSRPVPLKLPS Trigger: CGAGGGCAACTTCAGGGGTACTGGTCTTGAACCCGGGGATCGCCAGCCTTGGGCGGTGGAGTCCTTAAACCCAGCTCCCTCTTTCCAGCC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000209770.2 ENSMUST00000210552.2 ENSMUST00000211151.2 |
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| CDS-3UTR CAA 90 bp | AGAGAGCAGGTCAGCCGGTCTGAAGGCCGCAGAGACTGCCATGCCAGGAAGGTGTTGTCTTCCACGTATTaGGCTGGCACGGACGGGGAC | + |
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Preference number: 5 (lower is better) Translates to: REQVSRSEGRRDCHARKVLSSTY*AGTDGD Trigger: GTCCCCGTCCGTGCCAGCCAAATACGTGGAAGACAA...CACCTTCCTGGCATGGCAGTCTCTGCGGCCTTCAGACCGGCTGACCTGCTCTCT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000211236.2 |
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| CDS GCA 90 bp | TCCTTGTCCCTGCTGCTGCTGCTGCTGCTGCTGGGTCTCCACTTCTaGTGTTCCATCTCGAAAAGCCGTTCGGACCAGCATGTGGCGGTG | + |
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Preference number: 5 (lower is better) Translates to: SLSLLLLLLLLGLHF*CSISKSRSDQHVAV Trigger: CACCGCCACATGCTGGTCCGAACGGCTTTTCGAGATGGAACAGCAGAAGTGGAGACCCAGCAGCAGCAGCAGCAGCAGCAGGGACAAGGA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033877.6 |
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| CDS-3UTR CAA 90 bp | CTCAGTGACCTGCACCACGGGTCAGGACTTCCCTACCCCACCACCATAGTCATCCTCGTCCTGCTGTCCTaGTCCTTGTCCCTGCTGCTG | + |
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Preference number: 5 (lower is better) Translates to: LSDLHHGSGLPYPTTIVILVLLS*SLSLLL Trigger: CAGCAGCAGGGACAAGGACAAGGACAGCAGGACGAG...GATGACTATGGTGGTGGGGTAGGGAAGTCCTGACCCGTGGTGCAGGTCACTGAG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033877.6 |
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| CDS GCA 90 bp | GACTGCCATGCCAGGAAGGTGGCTGCAGTGATGATGGGCAAGGGATaGCGTCCAGTCACTAGCCACGTCTCATCTGCTAGCTCCACCAAC | + |
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Preference number: 5 (lower is better) Translates to: DCHARKVAAVMMGKG*RPVTSHVSSASSTN Trigger: GTTGGTGGAGCTAGCAGATGAGACGTGGCTAGTGACTGGACGGCATCCCTTGCCCATCATCACTGCAGCCACCTTCCTGGCATGGCAGTC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033877.6 |
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| CDS GCA 90 bp | TCGTCCTGCTGTCCTTGTCCTTGTCCCTGCTGCTGCTGCTGCTGCTaGTGGGTCTCCACTTCTGCTGTTCCATCTCGAAAAGCCGTTCGG | + |
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Preference number: 5 (lower is better) Translates to: SSCCPCPCPCCCCCC*WVSTSAVPSRKAVR Trigger: CCGAACGGCTTTTCGAGATGGAACAGCAGAAGTGGAGACCCAGCAGCAGCAGCAGCAGCAGCAGGGACAAGGACAAGGACAGCAGGACGA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033877.6 |
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| CDS CCA 90 bp | TCCTGCTGTCCTTGTCCTTGTCCCTGCTGCTGCTGCTGCTGCTGCTaGGTCTCCACTTCTGCTGTTCCATCTCGAAAAGCCGTTCGGACC | + |
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Preference number: 5 (lower is better) Translates to: SCCPCPCPCCCCCCC*VSTSAVPSRKAVRT Trigger: GGTCCGAACGGCTTTTCGAGATGGAACAGCAGAAGTGGAGACCCAGCAGCAGCAGCAGCAGCAGCAGGGACAAGGACAAGGACAGCAGGA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033877.6 |
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| CDS-3UTR CAA 90 bp | GGGTCAGGACTTCCCTACCCCACCACCATAGTCATCGCATCTGCCTCCCATCTTCACGGACGGGGACGCTaGGAACAGTTTGAAGCTGCT | + |
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Preference number: 5 (lower is better) Translates to: GSGLPYPTTIVIASASHLHGRGR*EQFEAA Trigger: AGCAGCTTCAAACTGTTCCAAGCGTCCCCGTCCGTG...AAGATGGGAGGCAGATGCGATGACTATGGTGGTGGGGTAGGGAAGTCCTGACCC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033877.6 |
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| CDS-3UTR CAA 90 bp | GAAGGCCGCAGAGACTGCCATGCCAGGAAGGTGGCTGCAGTGATGATGGGCAAGCACGGACGGGGACGCTaGGAACAGTTTGAAGCATTA | + |
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Preference number: 5 (lower is better) Translates to: EGRRDCHARKVAAVMMGKHGRGR*EQFEAL Trigger: TAATGCTTCAAACTGTTCCAAGCGTCCCCGTCCGTG...CTTGCCCATCATCACTGCAGCCACCTTCCTGGCATGGCAGTCTCTGCGGCCTTC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000211236.2 |
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| CDS TCA 90 bp | CTTCCACGTATTTGGCTGGCACGGACGGGGACGCTTGGAACAGTTTaGAGCTGCTGCAGTAAGACTTCACCAAGTCTGCCAGGCACAGGG | + |
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Preference number: 5 (lower is better) Translates to: LPRIWLARTGTLGTV*SCCSKTSPSLPGTG Trigger: CCCTGTGCCTGGCAGACTTGGTGAAGTCTTACTGCAGCAGCTTCAAACTGTTCCAAGCGTCCCCGTCCGTGCCAGCCAAATACGTGGAAG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033877.6 |
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| CDS CCA 90 bp | TCCACTTCTGCTGTTCCATCTCGAAAAGCCGTTCGGACCAGCATGTaGCGGTGCTGGAGAAGGTCACCAATGTGTTTCACCACCGACCGC | + |
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Preference number: 5 (lower is better) Translates to: STSAVPSRKAVRTSM*RCWRRSPMCFTTDR Trigger: GCGGTCGGTGGTGAAACACATTGGTGACCTTCTCCAGCACCGCCACATGCTGGTCCGAACGGCTTTTCGAGATGGAACAGCAGAAGTGGA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033877.6 |
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| CDS-3UTR CAA 90 bp | CAAGAGAGCAGGTCAGCCGGTCTGAAGGCCGCAGAGACTGCCATGCCAGGAAGGGACAGCATCTTGTCTTaGTCTTCCACGTATTTGGCT | + |
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Preference number: 5 (lower is better) Translates to: QESRSAGLKAAETAMPGRDSILS*SSTYLA Trigger: AGCCAAATACGTGGAAGACAAAGACAAGATGCTGTC...CCTTCCTGGCATGGCAGTCTCTGCGGCCTTCAGACCGGCTGACCTGCTCTCTTG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000211236.2 |
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| CDS GCA 90 bp | TCTGCTGTTCCATCTCGAAAAGCCGTTCGGACCAGCATGTGGCGGTaGTGGAGAAGGTCACCAATGTGTTTCACCACCGACCGCTTGTTA | + |
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Preference number: 5 (lower is better) Translates to: SAVPSRKAVRTSMWR*WRRSPMCFTTDRLL Trigger: TAACAAGCGGTCGGTGGTGAAACACATTGGTGACCTTCTCCAGCACCGCCACATGCTGGTCCGAACGGCTTTTCGAGATGGAACAGCAGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033877.6 |
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| CDS-3UTR CAA 90 bp | CTGCCATGCCAGGAAGGTGGCTGCAGTGATGATGGGCAAGGGATGCCGTCCAGTGTTCGAGACAGCATCTaGTCTTTGTCTTCCACGTAT | + |
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Preference number: 5 (lower is better) Translates to: LPCQEGGCSDDGQGMPSSVRDSI*SLSSTY Trigger: ATACGTGGAAGACAAAGACAAGATGCTGTCTCGAAC...ACTGGACGGCATCCCTTGCCCATCATCACTGCAGCCACCTTCCTGGCATGGCAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000211236.2 |
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| CDS-3UTR CAA 90 bp | GTTGATAGCACTAGGATGCAGCTCGTTCACCCCAGCAATGCGTTTACTGCACACGCGGGACGTTTCCTCTaGGGCAAATCGAAGGGACCA | + |
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Preference number: 5 (lower is better) Translates to: VDSTRMQLVHPSNAFTAHAGRFL*GKSKGP Trigger: TGGTCCCTTCGATTTGCCCAAGAGGAAACGTCCCGC...GTGTGCAGTAAACGCATTGCTGGGGTGAACGAGCTGCATCCTAGTGCTATCAAC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033877.6 |
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| CDS CCA 90 bp | CAAGGTTCGAGACAGCATCTTGTCTTTGTCTTCCACGTATTTGGCTaGCACGGACGGGGACGCTTGGAACAGTTTGAAGCTGCTGCAGTA | + |
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Preference number: 5 (lower is better) Translates to: QGSRQHLVFVFHVFG*HGRGRLEQFEAAAV Trigger: TACTGCAGCAGCTTCAAACTGTTCCAAGCGTCCCCGTCCGTGCCAGCCAAATACGTGGAAGACAAAGACAAGATGCTGTCTCGAACCTTG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033877.6 |
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| CDS-3UTR CAA 90 bp | ATGCGTTTACTGCACACTAGGGTAGAAGAGAGCTGGACAGACAGACTCCTTAACTTGTCTTCCACGTATTaGGCTGGCACGGACGGGGAC | + |
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Preference number: 5 (lower is better) Translates to: MRLLHTRVEESWTDRLLNLSSTY*AGTDGD Trigger: GTCCCCGTCCGTGCCAGCCAAATACGTGGAAGACAA...GTTAAGGAGTCTGTCTGTCCAGCTCTCTTCTACCCTAGTGTGCAGTAAACGCAT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033877.6 |
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| CDS CCA 90 bp | CAAGGTTCGAGACAGCATCTTGTCTTTGTCTTCCACGTATTTGGCTaGCACGGACGGGGACGCTTGGAACAGTTTGAAGCATTAACTGGC | + |
|
Preference number: 5 (lower is better) Translates to: QGSRQHLVFVFHVFG*HGRGRLEQFEALTG Trigger: GCCAGTTAATGCTTCAAACTGTTCCAAGCGTCCCCGTCCGTGCCAGCCAAATACGTGGAAGACAAAGACAAGATGCTGTCTCGAACCTTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000211236.2 |
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| CDS-3UTR CAA 90 bp | ATGCGTTTACTGCACACTAGGGTAGAAGAGAGCTGGACAGACAGACTCCTTAACTCGACGGAGATCTCGTaGCTGGCAGCGACTAACTTG | + |
|
Preference number: 5 (lower is better) Translates to: MRLLHTRVEESWTDRLLNSTEIS*LAATNL Trigger: CAAGTTAGTCGCTGCCAGCAACGAGATCTCCGTCGA...GTTAAGGAGTCTGTCTGTCCAGCTCTCTTCTACCCTAGTGTGCAGTAAACGCAT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033877.6 |
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| CDS TCA 90 bp | GCTGCCTGGCTAGCAGCTTGGGCTCTCTCAAAGTCTCTAACTTCCTaGGGGGTGCGCAAATACTGCTCTATTTCACTATCTGAAATATCC | + |
|
Preference number: 5 (lower is better) Translates to: AAWLAAWALSKSLTS*GVRKYCSISLSEIS Trigger: GGATATTTCAGATAGTGAAATAGAGCAGTATTTGCGCACCCCTCAGGAAGTTAGAGACTTTGAGAGAGCCCAAGCTGCTAGCCAGGCAGC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033877.6 |
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| CDS-3UTR CAA 90 bp | TCCTTAACAGTCTTAGGAAGGATTCATCCTGGACTGTATAGACAGCTGGCTCAGCTGGCAGCGACTAACTaGTTCGTTTTCCCCAGTGCT | + |
|
Preference number: 5 (lower is better) Translates to: SLTVLGRIHPGLYRQLAQLAATN*FVFPSA Trigger: AGCACTGGGGAAAACGAACAAGTTAGTCGCTGCCAG...CTGAGCCAGCTGTCTATACAGTCCAGGATGAATCCTTCCTAAGACTGTTAAGGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033877.6 |
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| CDS-3UTR CAA 90 bp | TTCTTGCAACACAACAGGCCTGTTAATAAATTGCAGTCAGAACTGAAGACACCTGACAGCATCTTGTCTTaGTCTTCCACGTATTTGGCT | + |
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Preference number: 5 (lower is better) Translates to: FLQHNRPVNKLQSELKTPDSILS*SSTYLA Trigger: AGCCAAATACGTGGAAGACAAAGACAAGATGCTGTC...AGGTGTCTTCAGTTCTGACTGCAATTTATTAACAGGCCTGTTGTGTTGCAAGAA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033877.6 |
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| CDS-3UTR CAA 90 bp | AAGCCAAGAGTCATTTCTTGCAACACAACAGGCCTGTTAATAAATTGCAGTCAGGTTCGAGACAGCATCTaGTCTTTGTCTTCCACGTAT | + |
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Preference number: 5 (lower is better) Translates to: KPRVISCNTTGLLINCSQVRDSI*SLSSTY Trigger: ATACGTGGAAGACAAAGACAAGATGCTGTCTCGAAC...CTGACTGCAATTTATTAACAGGCCTGTTGTGTTGCAAGAAATGACTCTTGGCTT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033877.6 |
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| CDS CAA 72 bp | GGCAGGAGGGGAGTGGGACTGGCGGGACGTTTCCTCTaGGGCAAATCGAAGGGACCATCCCCCACCTCGTCC | + |
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Preference number: 6 (lower is better) Translates to: GRRGVGLAGRFL*GKSKGPSPTSS Trigger: GGACGAGGTGGGGGATGGTCCCTTCGATTTGCCCAAGAGGAAACGTCCCGCCAGTCCCACTCCCCTCCTGCC 65% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000033877.6 |
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| CDS CCA 72 bp | GCAGGAGGGGAGTGGGACTGGCGGGACGTTTCCTCTTaGGCAAATCGAAGGGACCATCCCCCACCTCGTCCT | + |
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Preference number: 6 (lower is better) Translates to: AGGEWDWRDVSS*ANRRDHPPPRP Trigger: AGGACGAGGTGGGGGATGGTCCCTTCGATTTGCCCAAGAGGAAACGTCCCGCCAGTCCCACTCCCCTCCTGC 64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000033877.6 |
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| CDS CAA 90 bp | CTTGGGCAAATCGAAGGGACCATCCCCCACCTCGTCCTGCTGTCCTaGTCCTTGTCCCTGCTGCTGCTGCTGCTGCTGCTGGGTCTCCAC | + |
|
Preference number: 6 (lower is better) Translates to: LGQIEGTIPHLVLLS*SLSLLLLLLLLGLH Trigger: GTGGAGACCCAGCAGCAGCAGCAGCAGCAGCAGGGACAAGGACAAGGACAGCAGGACGAGGTGGGGGATGGTCCCTTCGATTTGCCCAAG 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033877.6 |
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| CDS GCA 72 bp | TCCCCCACCTCGTCCTGCTGTCCTTGTCCTTGTCCCTaGTGCTGCTGCTGCTGCTGCTGGGTCTCCACTTCT | + |
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Preference number: 6 (lower is better) Translates to: SPTSSCCPCPCP*CCCCCCWVSTS Trigger: AGAAGTGGAGACCCAGCAGCAGCAGCAGCAGCAGCAGGGACAAGGACAAGGACAGCAGGACGAGGTGGGGGA 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033877.6 |
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| CDS CCA 72 bp | GAGGGAGCTGGGTTTAAGGACTCCACCGCCCAAGGCTaGCGATCCCCGGGTTCAAGACCAGTACCCCTGAAG | + |
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Preference number: 6 (lower is better) Translates to: EGAGFKDSTAQG*RSPGSRPVPLK Trigger: CTTCAGGGGTACTGGTCTTGAACCCGGGGATCGCCAGCCTTGGGCGGTGGAGTCCTTAAACCCAGCTCCCTC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000209770.2 ENSMUST00000210552.2 ENSMUST00000211151.2 |
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| CDS CAA 72 bp | ATCGAAGGGACCATCCCCCACCTCGTCCTGCTGTCCTaGTCCTTGTCCCTGCTGCTGCTGCTGCTGCTGCTG | + |
|
Preference number: 6 (lower is better) Translates to: IEGTIPHLVLLS*SLSLLLLLLLL Trigger: CAGCAGCAGCAGCAGCAGCAGCAGGGACAAGGACAAGGACAGCAGGACGAGGTGGGGGATGGTCCCTTCGAT 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033877.6 |
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| CDS GCA 72 bp | GCCAGGAAGGTGGCTGCAGTGATGATGGGCAAGGGATaGCGTCCAGTCACTAGCCACGTCTCATCTGCTAGC | + |
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Preference number: 6 (lower is better) Translates to: ARKVAAVMMGKG*RPVTSHVSSAS Trigger: GCTAGCAGATGAGACGTGGCTAGTGACTGGACGGCATCCCTTGCCCATCATCACTGCAGCCACCTTCCTGGC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033877.6 |
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| CDS CAA 72 bp | AGGGTTAGGGACACGCATGGCTGCCTGGCTAGCAGCTaGGGCTCTCTCAAAGTCTCTAACTTCCTGAGGGGT | + |
|
Preference number: 6 (lower is better) Translates to: RVRDTHGCLASS*GSLKVSNFLRG Trigger: ACCCCTCAGGAAGTTAGAGACTTTGAGAGAGCCCAAGCTGCTAGCCAGGCAGCCATGCGTGTCCCTAACCCT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033877.6 |
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| CDS CAA 90 bp | TCTGCTAGCTCCACCAACAGCAAGGTTCGAGACAGCATCTTGTCTTaGTCTTCCACGTATTTGGCTGGCACGGACGGGGACGCTTGGAAC | + |
|
Preference number: 6 (lower is better) Translates to: SASSTNSKVRDSILS*SSTYLAGTDGDAWN Trigger: GTTCCAAGCGTCCCCGTCCGTGCCAGCCAAATACGTGGAAGACAAAGACAAGATGCTGTCTCGAACCTTGCTGTTGGTGGAGCTAGCAGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000033877.6 ENSMUST00000211236.2 |
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| CDS CAA 90 bp | GTCTCATCTGCTAGCTCCACCAACAGCAAGGTTCGAGACAGCATCTaGTCTTTGTCTTCCACGTATTTGGCTGGCACGGACGGGGACGCT | + |
|
Preference number: 6 (lower is better) Translates to: VSSASSTNSKVRDSI*SLSSTYLAGTDGDA Trigger: AGCGTCCCCGTCCGTGCCAGCCAAATACGTGGAAGACAAAGACAAGATGCTGTCTCGAACCTTGCTGTTGGTGGAGCTAGCAGATGAGAC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033877.6 |
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| CDS TCA 72 bp | ATTTGGCTGGCACGGACGGGGACGCTTGGAACAGTTTaGAGCTGCTGCAGTAAGACTTCACCAAGTCTGCCA | + |
|
Preference number: 6 (lower is better) Translates to: IWLARTGTLGTV*SCCSKTSPSLP Trigger: TGGCAGACTTGGTGAAGTCTTACTGCAGCAGCTTCAAACTGTTCCAAGCGTCCCCGTCCGTGCCAGCCAAAT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033877.6 |
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| CDS CAA 72 bp | GTCTTCCACGTATTTGGCTGGCACGGACGGGGACGCTaGGAACAGTTTGAAGCTGCTGCAGTAAGACTTCAC | + |
|
Preference number: 6 (lower is better) Translates to: VFHVFGWHGRGR*EQFEAAAVRLH Trigger: GTGAAGTCTTACTGCAGCAGCTTCAAACTGTTCCAAGCGTCCCCGTCCGTGCCAGCCAAATACGTGGAAGAC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033877.6 |
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| CDS CAA 72 bp | TCCCCAGTGCTTCGAGAATATGTCACTTCCCTGAAGTaGCCCTCGTCGCTAAAGGTGGTAGTTAGGACCCCT | + |
|
Preference number: 6 (lower is better) Translates to: SPVLREYVTSLK*PSSLKVVVRTP Trigger: AGGGGTCCTAACTACCACCTTTAGCGACGAGGGCAACTTCAGGGAAGTGACATATTCTCGAAGCACTGGGGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033877.6 |
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| CDS CAA 72 bp | GTTCGAGACAGCATCTTGTCTTTGTCTTCCACGTATTaGGCTGGCACGGACGGGGACGCTTGGAACAGTTTG | + |
|
Preference number: 6 (lower is better) Translates to: VRDSILSLSSTY*AGTDGDAWNSL Trigger: CAAACTGTTCCAAGCGTCCCCGTCCGTGCCAGCCAAATACGTGGAAGACAAAGACAAGATGCTGTCTCGAAC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000033877.6 ENSMUST00000211236.2 |
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| CDS CAA 90 bp | CTTGTCTTTGTCTTCCACGTATTTGGCTGGCACGGACGGGGACGCTaGGAACAGTTTGAAGCTGCTGCAGTAAGACTTCACCAAGTCTGC | + |
|
Preference number: 6 (lower is better) Translates to: LVFVFHVFGWHGRGR*EQFEAAAVRLHQVC Trigger: GCAGACTTGGTGAAGTCTTACTGCAGCAGCTTCAAACTGTTCCAAGCGTCCCCGTCCGTGCCAGCCAAATACGTGGAAGACAAAGACAAG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033877.6 |
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| CDS CAA 90 bp | AACAGCAAGGTTCGAGACAGCATCTTGTCTTTGTCTTCCACGTATTaGGCTGGCACGGACGGGGACGCTTGGAACAGTTTGAAGCTGCTG | + |
|
Preference number: 6 (lower is better) Translates to: NSKVRDSILSLSSTY*AGTDGDAWNSLKLL Trigger: CAGCAGCTTCAAACTGTTCCAAGCGTCCCCGTCCGTGCCAGCCAAATACGTGGAAGACAAAGACAAGATGCTGTCTCGAACCTTGCTGTT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033877.6 |
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| CDS CCA 72 bp | AGACAGCATCTTGTCTTTGTCTTCCACGTATTTGGCTaGCACGGACGGGGACGCTTGGAACAGTTTGAAGCT | + |
|
Preference number: 6 (lower is better) Translates to: RQHLVFVFHVFG*HGRGRLEQFEA Trigger: AGCTTCAAACTGTTCCAAGCGTCCCCGTCCGTGCCAGCCAAATACGTGGAAGACAAAGACAAGATGCTGTCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033877.6 |
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| CDS CCA 72 bp | AGACAGCATCTTGTCTTTGTCTTCCACGTATTTGGCTaGCACGGACGGGGACGCTTGGAACAGTTTGAAGCA | + |
|
Preference number: 6 (lower is better) Translates to: RQHLVFVFHVFG*HGRGRLEQFEA Trigger: TGCTTCAAACTGTTCCAAGCGTCCCCGTCCGTGCCAGCCAAATACGTGGAAGACAAAGACAAGATGCTGTCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000211236.2 |
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| CDS CAA 72 bp | GTCTTCCACGTATTTGGCTGGCACGGACGGGGACGCTaGGAACAGTTTGAAGCATTAACTGGCATCTTTGGA | + |
|
Preference number: 6 (lower is better) Translates to: VFHVFGWHGRGR*EQFEALTGIFG Trigger: TCCAAAGATGCCAGTTAATGCTTCAAACTGTTCCAAGCGTCCCCGTCCGTGCCAGCCAAATACGTGGAAGAC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000211236.2 |
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| CDS CAA 90 bp | CAGGTCTCTTACTCGACGGAGATCTCGTTGCTGGCAGCGACTAACTaGTTCGTTTTCCCCAGTGCTTCGAGAATATGTCACTTCCCTGAA | + |
|
Preference number: 6 (lower is better) Translates to: QVSYSTEISLLAATN*FVFPSASRICHFPE Trigger: TTCAGGGAAGTGACATATTCTCGAAGCACTGGGGAAAACGAACAAGTTAGTCGCTGCCAGCAACGAGATCTCCGTCGAGTAAGAGACCTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033877.6 |
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| CDS TCA 72 bp | CTGAGGGGTGCGCAAATACTGCTCTATTTCACTATCTaGAATATCCTCATCGCCAGTCACTGCAGATTCGGG | + |
|
Preference number: 6 (lower is better) Translates to: LRGAQILLYFTI*NILIASHCRFG Trigger: CCCGAATCTGCAGTGACTGGCGATGAGGATATTTCAGATAGTGAAATAGAGCAGTATTTGCGCACCCCTCAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033877.6 |
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| CDS CAA 90 bp | CTTGTCTTTGTCTTCCACGTATTTGGCTGGCACGGACGGGGACGCTaGGAACAGTTTGAAGCATTAACTGGCATCTTTGGACTCCATATA | + |
|
Preference number: 6 (lower is better) Translates to: LVFVFHVFGWHGRGR*EQFEALTGIFGLHI Trigger: TATATGGAGTCCAAAGATGCCAGTTAATGCTTCAAACTGTTCCAAGCGTCCCCGTCCGTGCCAGCCAAATACGTGGAAGACAAAGACAAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000211236.2 |
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