Pregenerated sensors for BRD7 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000031660Ensembl transcript IDs: ENSMUST00000034085.8
Found 55 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | TTGACCTGTGTATTTCAGAACAGGGAAATGATTTGGGGGCACAAATaGAACACAGGTGGCCTTTGGAAAACTGAGCAGGAGCAAGCTCTC | + |
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Preference number: 1 (lower is better) Translates to: LTCVFQNREMIWGHK*NTGGLWKTEQEQAL Trigger: GAGAGCTTGCTCCTGCTCAGTTTTCCAAAGGCCACCTGTGTTTCATTTGTGCCCCCAAATCATTTCCCTGTTCTGAAATACACAGGTCAA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000034085.8 |
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| 3UTR CCA 90 bp | ACTCTAGACTCTGATGTGTCTAAGGGTGACTTGGCTCATCTTACTTaGTTCATCCATTTGCAATTGCTCCAAAGTAACTGGGAAAAACAG | + |
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Preference number: 1 (lower is better) Translates to: TLDSDVSKGDLAHLT*FIHLQLLQSNWEKQ Trigger: CTGTTTTTCCCAGTTACTTTGGAGCAATTGCAAATGGATGAACCAAGTAAGATGAGCCAAGTCACCCTTAGACACATCAGAGTCTAGAGT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000034085.8 |
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| 3UTR-3UTR CCA 90 bp | GGGGGCACAAATGAAACACAGGTGGCCTTTGGAAAACTGAGCAGGAGCAAGCTCTGTCTAAGGGTGACTTaGCTCATCTTACTTGGTTCA | + |
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Preference number: 2 (lower is better) Translates to: GGTNETQVAFGKLSRSKLCLRVT*LILLGS Trigger: TGAACCAAGTAAGATGAGCCAAGTCACCCTTAGACA...GAGCTTGCTCCTGCTCAGTTTTCCAAAGGCCACCTGTGTTTCATTTGTGCCCCC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000034085.8 |
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| 3UTR-3UTR GCA 90 bp | CTTGGTTCATCCATTTGCAATTGCTCCAAAGTAACTGGGAAAAACAGAAAGAAGGGGGGAGGGGCTACATaGATGTATGTATGTATGTAC | + |
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Preference number: 2 (lower is better) Translates to: LGSSICNCSKVTGKNRKKGGGAT*MYVCMY Trigger: GTACATACATACATACATGCATGTAGCCCCTCCCCC...CTTCTTTCTGTTTTTCCCAGTTACTTTGGAGCAATTGCAAATGGATGAACCAAG 42% GC, longest homopolymer 6 nt, total homopolymer stretches 15 nt. Matches the following 1 transcripts: ENSMUST00000034085.8 |
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| 3UTR-3UTR CCA 90 bp | CTGAATGTCACTCAGATGAGCTCTGGTAGGGCAGAGCTTATAACTAGCTGCTTATACAAGGCCAATCTTTaGAACATTAAAAGGAACTGT | + |
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Preference number: 2 (lower is better) Translates to: LNVTQMSSGRAELITSCLYKANL*NIKRNC Trigger: ACAGTTCCTTTTAATGTTCCAAAGATTGGCCTTGTA...TAAGCAGCTAGTTATAAGCTCTGCCCTACCAGAGCTCATCTGAGTGACATTCAG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034085.8 |
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| 3UTR-3UTR CCA 90 bp | GCAATCCTCCTCTCTCAGCCACTCAAATACTGGGATTATAAATGCAACCTACCATTGCTCCAAAGTAACTaGGAAAAACAGAAAGAAGGA | + |
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Preference number: 2 (lower is better) Translates to: AILLSQPLKYWDYKCNLPLLQSN*EKQKEG Trigger: TCCTTCTTTCTGTTTTTCCCAGTTACTTTGGAGCAA...TGGTAGGTTGCATTTATAATCCCAGTATTTGAGTGGCTGAGAGAGGAGGATTGC 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000034085.8 |
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| 3UTR CAA 90 bp | GATGTGTCTAAGGGTGACTTGGCTCATCTTACTTGGTTCATCCATTaGCAATTGCTCCAAAGTAACTGGGAAAAACAGAAAGAAGGAAAA | + |
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Preference number: 2 (lower is better) Translates to: DVSKGDLAHLTWFIH*QLLQSNWEKQKEGK Trigger: TTTTCCTTCTTTCTGTTTTTCCCAGTTACTTTGGAGCAATTGCAAATGGATGAACCAAGTAAGATGAGCCAAGTCACCCTTAGACACATC 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000034085.8 |
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| 3UTR CAA 90 bp | ATTGTTCTAGTAAGAGTGGTAAATATGAAAACTTGGGGAATTAATTaGAGGACTGCTCCTTTGAAAGATGACCATGAGAAAGGCTGGTGT | + |
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Preference number: 2 (lower is better) Translates to: IVLVRVVNMKTWGIN*RTAPLKDDHEKGWC Trigger: ACACCAGCCTTTCTCATGGTCATCTTTCAAAGGAGCAGTCCTCAAATTAATTCCCCAAGTTTTCATATTTACCACTCTTACTAGAACAAT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034085.8 |
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| 3UTR TCA 72 bp | GGGGCACAAATGAAACACAGGTGGCCTTTGGAAAACTaGGCAGGAGCAAGCTCTCCACTAACTCTAGACTCT | + |
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Preference number: 3 (lower is better) Translates to: GAQMKHRWPLEN*AGASSPLTLDS Trigger: AGAGTCTAGAGTTAGTGGAGAGCTTGCTCCTGCTCAGTTTTCCAAAGGCCACCTGTGTTTCATTTGTGCCCC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034085.8 |
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| 3UTR TCA 72 bp | GTATTTCAGAACAGGGAAATGATTTGGGGGCACAAATaGAACACAGGTGGCCTTTGGAAAACTGAGCAGGAG | + |
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Preference number: 3 (lower is better) Translates to: VFQNREMIWGHK*NTGGLWKTEQE Trigger: CTCCTGCTCAGTTTTCCAAAGGCCACCTGTGTTTCATTTGTGCCCCCAAATCATTTCCCTGTTCTGAAATAC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000034085.8 |
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| 3UTR-3UTR CAA 90 bp | GCAATCCTCCTCTCTCAGCCACTCAAATACTGGGATTATAAATGCAACCTACCAACTATGATTAAAAAGTaGGGCCCTCAGCCACTGAGA | + |
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Preference number: 3 (lower is better) Translates to: AILLSQPLKYWDYKCNLPTMIKK*GPQPLR Trigger: TCTCAGTGGCTGAGGGCCCAACTTTTTAATCATAGT...TGGTAGGTTGCATTTATAATCCCAGTATTTGAGTGGCTGAGAGAGGAGGATTGC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000034085.8 |
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| 3UTR CCA 72 bp | TCTGATGTGTCTAAGGGTGACTTGGCTCATCTTACTTaGTTCATCCATTTGCAATTGCTCCAAAGTAACTGG | + |
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Preference number: 3 (lower is better) Translates to: SDVSKGDLAHLT*FIHLQLLQSNW Trigger: CCAGTTACTTTGGAGCAATTGCAAATGGATGAACCAAGTAAGATGAGCCAAGTCACCCTTAGACACATCAGA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034085.8 |
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| 3UTR-3UTR CAA 90 bp | ATAAAAAGTCAGACCATCATTAGTGGCAGTCTGAAAGGCCATCTCATAAGGCTAACTTGGGGAATTAATTaGAGGACTGCTCCTTTGAAA | + |
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Preference number: 3 (lower is better) Translates to: IKSQTIISGSLKGHLIRLTWGIN*RTAPLK Trigger: TTTCAAAGGAGCAGTCCTCAAATTAATTCCCCAAGT...TAGCCTTATGAGATGGCCTTTCAGACTGCCACTAATGATGGTCTGACTTTTTAT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000034085.8 |
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| 3UTR GCA 72 bp | TACTGGGATTATAAATGCAACCTACCATACCCAGCTTaGCTCTTAAAGAGGTTATATTTGGAAAAACTATTA | + |
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Preference number: 3 (lower is better) Translates to: YWDYKCNLPYPA*LLKRLYLEKLL Trigger: TAATAGTTTTTCCAAATATAACCTCTTTAAGAGGCAAGCTGGGTATGGTAGGTTGCATTTATAATCCCAGTA 35% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000034085.8 |
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| CDS-3UTR GCA 90 bp | GCTGGTGTGTGTCCTAGGTGTCCATCCTCAGAACCAAGGCCGAGCAAGGCAAAGTCTTCCCTCTCGCGCTaGCAGCAGCCGCTGTCCTCC | + |
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Preference number: 4 (lower is better) Translates to: AGVCPRCPSSEPRPSKAKSSLSR*QQPLSS Trigger: GGAGGACAGCGGCTGCTGGCAGCGCGAGAGGGAAGA...CTTTGCCTTGCTCGGCCTTGGTTCTGAGGATGGACACCTAGGACACACACCAGC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034085.8 |
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| CDS-3UTR TCA 90 bp | GCTGGTGTGTGTCCTAGGTGTCCATCCTCAGAACCAAGGCCGAGCAAGGCAAAGGCTGTGAGCCTGTCCTaGCTGCTGGACTCCAAACGC | + |
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Preference number: 4 (lower is better) Translates to: AGVCPRCPSSEPRPSKAKAVSLS*LLDSKR Trigger: GCGTTTGGAGTCCAGCAGTCAGGACAGGCTCACAGC...CTTTGCCTTGCTCGGCCTTGGTTCTGAGGATGGACACCTAGGACACACACCAGC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034085.8 |
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| CDS-3UTR TCA 90 bp | GTGTGTGTCCTAGGTGTCCATCCTCAGAACCAAGGCCGAGCAAGGCAAAGGGTACAGCTTGCAGTGCTGTaGGCCTGTCCTGACTGCTGG | + |
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Preference number: 4 (lower is better) Translates to: VCVLGVHPQNQGRARQRVQLAVL*ACPDCW Trigger: CCAGCAGTCAGGACAGGCTCACAGCACTGCAAGCTG...TACCCTTTGCCTTGCTCGGCCTTGGTTCTGAGGATGGACACCTAGGACACACAC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034085.8 |
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| CDS-3UTR GCA 90 bp | GCTGGTGTGTGTCCTAGGTGTCCATCCTCAGAACCAAGGCCGAGCAAGGCAAAGGCCGCCGTGTTAGCTTaGCTCCTGACTCCTGGACAA | + |
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Preference number: 4 (lower is better) Translates to: AGVCPRCPSSEPRPSKAKAAVLA*LLTPGQ Trigger: TTGTCCAGGAGTCAGGAGGCAAGCTAACACGGCGGC...CTTTGCCTTGCTCGGCCTTGGTTCTGAGGATGGACACCTAGGACACACACCAGC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034085.8 |
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| CDS-3UTR TCA 90 bp | GTGTGTGTCCTAGGTGTCCATCCTCAGAACCAAGGCCGAGCAAGGCAAAGGGTACTGTCCTCCCCACTCTaGCAGGCATCTGTTCGTTCT | + |
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Preference number: 4 (lower is better) Translates to: VCVLGVHPQNQGRARQRVLSSPL*QASVRS Trigger: AGAACGAACAGATGCCTGTCAGAGTGGGGAGGACAG...TACCCTTTGCCTTGCTCGGCCTTGGTTCTGAGGATGGACACCTAGGACACACAC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034085.8 |
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| CDS-3UTR GCA 90 bp | GGGGGCACAAATGAAACACAGGTGGCCTTTGGAAAACTGAGCAGGAGCAAGCTCCAGTCGCTCATTCTGTaGCTCCTGGAGCTCCCTGAG | + |
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Preference number: 4 (lower is better) Translates to: GGTNETQVAFGKLSRSKLQSLIL*LLELPE Trigger: CTCAGGGAGCTCCAGGAGGCACAGAATGAGCGACTG...GAGCTTGCTCCTGCTCAGTTTTCCAAAGGCCACCTGTGTTTCATTTGTGCCCCC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000034085.8 |
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| CDS-3UTR TCA 90 bp | GTGTGTGTCCTAGGTGTCCATCCTCAGAACCAAGGCCGAGCAAGGCAAAGGGTACTTTCAAATTCACACTaGCTGTTTGCCAGCCGCCGT | + |
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Preference number: 4 (lower is better) Translates to: VCVLGVHPQNQGRARQRVLSNSH*LFASRR Trigger: ACGGCGGCTGGCAAACAGTCAGTGTGAATTTGAAAG...TACCCTTTGCCTTGCTCGGCCTTGGTTCTGAGGATGGACACCTAGGACACACAC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034085.8 |
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| CDS-3UTR GCA 90 bp | GTGTGTGTCCTAGGTGTCCATCCTCAGAACCAAGGCCGAGCAAGGCAAAGGGTAAAGGTTGTTACAGCTTaGAGTGCTGTGAGCCTGTCC | + |
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Preference number: 4 (lower is better) Translates to: VCVLGVHPQNQGRARQRVKVVTA*SAVSLS Trigger: GGACAGGCTCACAGCACTGCAAGCTGTAACAACCTT...TACCCTTTGCCTTGCTCGGCCTTGGTTCTGAGGATGGACACCTAGGACACACAC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034085.8 |
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| CDS-3UTR GCA 90 bp | CCGAGCAAGGCAAAGGGTAATTCAGCTGACACACCAGCGAGCCTCACAGTCCCATGCTTCCGAGTTTTCTaGAAGTCTGACATGAAGTCT | + |
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Preference number: 4 (lower is better) Translates to: PSKAKGNSADTPASLTVPCFRVF*KSDMKS Trigger: AGACTTCATGTCAGACTTGCAGAAAACTCGGAAGCA...TGGGACTGTGAGGCTCGCTGGTGTGTCAGCTGAATTACCCTTTGCCTTGCTCGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034085.8 |
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| CDS-3UTR GCA 90 bp | AGGACACCATTCCCATTAGGTACAGAGAAGGAAGCCATAGTGGGAAACTTTAACTCTTCCCCCGGAGCCTaGTTCTCGCCTTTCTTCCTC | + |
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Preference number: 4 (lower is better) Translates to: RTPFPLGTEKEAIVGNFNSSPGA*FSPFFL Trigger: GAGGAAGAAAGGCGAGAAGCAGGCTCCGGGGGAAGA...GTTAAAGTTTCCCACTATGGCTTCCTTCTCTGTACCTAATGGGAATGGTGTCCT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000034085.8 |
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| CDS-3UTR CCA 90 bp | CTGAATGTCACTCAGATGAGCTCTGGTAGGGCAGAGCTTATAACTAGCTGCTTAAGCTGTTTCCCACGATaGGGGAAGGAACAGAAATCC | + |
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Preference number: 4 (lower is better) Translates to: LNVTQMSSGRAELITSCLSCFPR*GKEQKS Trigger: GGATTTCTGTTCCTTCCCCCATCGTGGGAAACAGCT...TAAGCAGCTAGTTATAAGCTCTGCCCTACCAGAGCTCATCTGAGTGACATTCAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034085.8 |
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| CDS-3UTR GCA 90 bp | AGGACACCATTCCCATTAGGTACAGAGAAGGAAGCCATAGTGGGAAACTTTAACCGCTCAATCTGCTCATaGTCCCTTTCTGAGTTGCTG | + |
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Preference number: 4 (lower is better) Translates to: RTPFPLGTEKEAIVGNFNRSICS*SLSELL Trigger: CAGCAACTCAGAAAGGGAGCATGAGCAGATTGAGCG...GTTAAAGTTTCCCACTATGGCTTCCTTCTCTGTACCTAATGGGAATGGTGTCCT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034085.8 |
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| CDS-3UTR GCA 90 bp | GAAGGAAAAGAAAACACACTAGACACGTTTCATCACCACCATCCTCCTAGCAGATGTTACAGCTTGCAGTaGTGTGAGCCTGTCCTGACT | + |
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Preference number: 4 (lower is better) Translates to: EGKENTLDTFHHHHPPSRCYSLQ*CEPVLT Trigger: AGTCAGGACAGGCTCACAGCACTGCAAGCTGTAACA...TCTGCTAGGAGGATGGTGGTGATGAAACGTGTCTAGTGTGTTTTCTTTTCCTTC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034085.8 |
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| CDS-3UTR TCA 90 bp | GCAATCCTCCTCTCTCAGCCACTCAAATACTGGGATTATAAATGCAACCTACCACTCATGCTCCCTTTCTaGGTTGCTGCTTCTCCATTT | + |
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Preference number: 4 (lower is better) Translates to: AILLSQPLKYWDYKCNLPLMLPF*VAASPF Trigger: AAATGGAGAAGCAGCAACTCAGAAAGGGAGCATGAG...TGGTAGGTTGCATTTATAATCCCAGTATTTGAGTGGCTGAGAGAGGAGGATTGC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034085.8 |
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| CDS-3UTR GCA 90 bp | ATAAAAAGTCAGACCATCATTAGTGGCAGTCTGAAAGGCCATCTCATAAGGCTAGACATGTCCAAGTCCTaGAGGCTCCTGGAATGTCCT | + |
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Preference number: 4 (lower is better) Translates to: IKSQTIISGSLKGHLIRLDMSKS*RLLECP Trigger: AGGACATTCCAGGAGCCTGCAGGACTTGGACATGTC...TAGCCTTATGAGATGGCCTTTCAGACTGCCACTAATGATGGTCTGACTTTTTAT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000034085.8 |
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| CDS-3UTR GCA 90 bp | GAAGGAAAAGAAAACACACTAGACACGTTTCATCACCACCATCCTCCTAGCAGATTTTGCTGTGTCCAATaGTCTGGTCTGGCCTTCATC | + |
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Preference number: 4 (lower is better) Translates to: EGKENTLDTFHHHHPPSRFCCVQ*SGLAFI Trigger: GATGAAGGCCAGACCAGAGCATTGGACACAGCAAAA...TCTGCTAGGAGGATGGTGGTGATGAAACGTGTCTAGTGTGTTTTCTTTTCCTTC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000034085.8 |
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| 3UTR CAA 72 bp | TCACTTGACCTGTGTATTTCAGAACAGGGAAATGATTaGGGGGCACAAATGAAACACAGGTGGCCTTTGGAA | + |
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Preference number: 4 (lower is better) Translates to: SLDLCISEQGND*GAQMKHRWPLE Trigger: TTCCAAAGGCCACCTGTGTTTCATTTGTGCCCCCAAATCATTTCCCTGTTCTGAAATACACAGGTCAAGTGA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000034085.8 |
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| CDS-3UTR CCA 90 bp | ATAAAAAGTCAGACCATCATTAGTGGCAGTCTGAAAGGCCATCTCATAAGGCTATCCAATGCTCTGGTCTaGCCTTCATCTTCAGGAGAT | + |
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Preference number: 4 (lower is better) Translates to: IKSQTIISGSLKGHLIRLSNALV*PSSSGD Trigger: ATCTCCTGAAGATGAAGGCCAGACCAGAGCATTGGA...TAGCCTTATGAGATGGCCTTTCAGACTGCCACTAATGATGGTCTGACTTTTTAT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000034085.8 |
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| CDS-3UTR CCA 90 bp | ATAAAAAGTCAGACCATCATTAGTGGCAGTCTGAAAGGCCATCTCATAAGGCTAGCTTACAACATCACCTaGAGTCACTTGCTGTGTGAG | + |
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Preference number: 4 (lower is better) Translates to: IKSQTIISGSLKGHLIRLAYNIT*SHLLCE Trigger: CTCACACAGCAAGTGACTCCAGGTGATGTTGTAAGC...TAGCCTTATGAGATGGCCTTTCAGACTGCCACTAATGATGGTCTGACTTTTTAT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000034085.8 |
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| CDS-3UTR TCA 90 bp | GGTGACTTGGCTCATCTTACTTGGTTCATCCATTTGCAATTGCTCCAAAGTAACTCTGCAAGTCTGACATaGAGTCTATACTCTGCTTCA | + |
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Preference number: 4 (lower is better) Translates to: GDLAHLTWFIHLQLLQSNSASLT*SLYSAS Trigger: TGAAGCAGAGTATAGACTTCATGTCAGACTTGCAGA...GTTACTTTGGAGCAATTGCAAATGGATGAACCAAGTAAGATGAGCCAAGTCACC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034085.8 |
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| CDS-3UTR TCA 90 bp | GCAATCCTCCTCTCTCAGCCACTCAAATACTGGGATTATAAATGCAACCTACCAAAAACTCAGAGATGCTaGAATTGTTTGGAAGGTCAG | + |
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Preference number: 4 (lower is better) Translates to: AILLSQPLKYWDYKCNLPKTQRC*NCLEGQ Trigger: CTGACCTTCCAAACAATTTCAGCATCTCTGAGTTTT...TGGTAGGTTGCATTTATAATCCCAGTATTTGAGTGGCTGAGAGAGGAGGATTGC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000034085.8 |
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| CDS-3UTR CCA 90 bp | AAGTCTGATGTCCTGAGTTCAATCCATGGAATCTACAATGGAAGCAGAAAGTCTGTCAAAGACTTCAGCTaGAGCACCAAAGGTTGTTAC | + |
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Preference number: 4 (lower is better) Translates to: KSDVLSSIHGIYNGSRKSVKDFS*STKGCY Trigger: GTAACAACCTTTGGTGCTCCAGCTGAAGTCTTTGAC...AGACTTTCTGCTTCCATTGTAGATTCCATGGATTGAACTCAGGACATCAGACTT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034085.8 |
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| CDS-3UTR GCA 90 bp | AAGTCTGATGTCCTGAGTTCAATCCATGGAATCTACAATGGAAGCAGAAAGTCTCCCTTTCTGAGTTGCTaGTTCTCCATTTGTCTTCAA | + |
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Preference number: 4 (lower is better) Translates to: KSDVLSSIHGIYNGSRKSPFLSC*FSICLQ Trigger: TTGAAGACAAATGGAGAAGCAGCAACTCAGAAAGGG...AGACTTTCTGCTTCCATTGTAGATTCCATGGATTGAACTCAGGACATCAGACTT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034085.8 |
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| CDS-3UTR GCA 90 bp | CTTGGTTCATCCATTTGCAATTGCTCCAAAGTAACTGGGAAAAACAGAAAGAAGGCTCCCTTTCTGAGTTaGTGCTTCTCCATTTGTCTT | + |
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Preference number: 4 (lower is better) Translates to: LGSSICNCSKVTGKNRKKAPFLS*CFSICL Trigger: AAGACAAATGGAGAAGCAGCAACTCAGAAAGGGAGC...CTTCTTTCTGTTTTTCCCAGTTACTTTGGAGCAATTGCAAATGGATGAACCAAG 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000034085.8 |
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| CDS-3UTR GCA 90 bp | AAGTCTGATGTCCTGAGTTCAATCCATGGAATCTACAATGGAAGCAGAAAGTCTAATCTCTGCTTCTTTTaGTGTGTCCAATGCTCTGGT | + |
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Preference number: 4 (lower is better) Translates to: KSDVLSSIHGIYNGSRKSNLCFF*CVQCSG Trigger: ACCAGAGCATTGGACACAGCAAAAGAAGCAGAGATT...AGACTTTCTGCTTCCATTGTAGATTCCATGGATTGAACTCAGGACATCAGACTT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034085.8 |
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| CDS GCA 90 bp | CGCCGTGTTAGCTTGCCTCCTGACTCCTGGACAACGCGCTCAATCTaGTCATGCTCCCTTTCTGAGTTGCTGCTTCTCCATTTGTCTTCA | + |
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Preference number: 5 (lower is better) Translates to: RRVSLPPDSWTTRSI*SCSLSELLLLHLSS Trigger: TGAAGACAAATGGAGAAGCAGCAACTCAGAAAGGGAGCATGAGCAGATTGAGCGCGTTGTCCAGGAGTCAGGAGGCAAGCTAACACGGCG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034085.8 |
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| CDS CCA 90 bp | CTTCCTCTGGAACACCTCAGCCTCTTCGGAGTCAAAGACTTCAGCTaGAGCACCAAAGGTTGTTACAGCTTGCAGTGCTGTGAGCCTGTC | + |
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Preference number: 5 (lower is better) Translates to: LPLEHLSLFGVKDFS*STKGCYSLQCCEPV Trigger: GACAGGCTCACAGCACTGCAAGCTGTAACAACCTTTGGTGCTCCAGCTGAAGTCTTTGACTCCGAAGAGGCTGAGGTGTTCCAGAGGAAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034085.8 |
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| CDS GCA 90 bp | GTTAGCTTGCCTCCTGACTCCTGGACAACGCGCTCAATCTGCTCATaGTCCCTTTCTGAGTTGCTGCTTCTCCATTTGTCTTCAAGCACA | + |
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Preference number: 5 (lower is better) Translates to: VSLPPDSWTTRSICS*SLSELLLLHLSSST Trigger: TGTGCTTGAAGACAAATGGAGAAGCAGCAACTCAGAAAGGGAGCATGAGCAGATTGAGCGCGTTGTCCAGGAGTCAGGAGGCAAGCTAAC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034085.8 |
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| CDS-3UTR CAA 90 bp | CCGAGCAAGGCAAAGGGTAATTCAGCTGACACACCAGCGAGCCTCACAGTCCCATTGCTGCTTCTCCATTaGTCTTCAAGCACATCTTTG | + |
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Preference number: 5 (lower is better) Translates to: PSKAKGNSADTPASLTVPLLLLH*SSSTSL Trigger: CAAAGATGTGCTTGAAGACAAATGGAGAAGCAGCAA...TGGGACTGTGAGGCTCGCTGGTGTGTCAGCTGAATTACCCTTTGCCTTGCTCGG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034085.8 |
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| CDS-3UTR CAA 90 bp | GCAATCCTCCTCTCTCAGCCACTCAAATACTGGGATTATAAATGCAACCTACCAATTCACACTGACTGTTaGCCAGCCGCCGTGTTAGCT | + |
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Preference number: 5 (lower is better) Translates to: AILLSQPLKYWDYKCNLPIHTDC*PAAVLA Trigger: AGCTAACACGGCGGCTGGCAAACAGTCAGTGTGAAT...TGGTAGGTTGCATTTATAATCCCAGTATTTGAGTGGCTGAGAGAGGAGGATTGC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034085.8 |
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| CDS-3UTR CAA 90 bp | GGTGACTTGGCTCATCTTACTTGGTTCATCCATTTGCAATTGCTCCAAAGTAACAAAGGTTGTTACAGCTaGCAGTGCTGTGAGCCTGTC | + |
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Preference number: 5 (lower is better) Translates to: GDLAHLTWFIHLQLLQSNKGCYS*QCCEPV Trigger: GACAGGCTCACAGCACTGCAAGCTGTAACAACCTTT...GTTACTTTGGAGCAATTGCAAATGGATGAACCAAGTAAGATGAGCCAAGTCACC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034085.8 |
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| CDS-3UTR CAA 90 bp | ATAAAAAGTCAGACCATCATTAGTGGCAGTCTGAAAGGCCATCTCATAAGGCTACTGGAGCACCAAAGGTaGTTACAGCTTGCAGTGCTG | + |
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Preference number: 5 (lower is better) Translates to: IKSQTIISGSLKGHLIRLLEHQR*LQLAVL Trigger: CAGCACTGCAAGCTGTAACAACCTTTGGTGCTCCAG...TAGCCTTATGAGATGGCCTTTCAGACTGCCACTAATGATGGTCTGACTTTTTAT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000034085.8 |
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| CDS-3UTR CAA 90 bp | CTTGGTTCATCCATTTGCAATTGCTCCAAAGTAACTGGGAAAAACAGAAAGAAGGAACAGAAATCCCCATaGCTTTTCGCACTCCGTGTA | + |
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Preference number: 5 (lower is better) Translates to: LGSSICNCSKVTGKNRKKEQKSP*LFALRV Trigger: TACACGGAGTGCGAAAAGCAATGGGGATTTCTGTTC...CTTCTTTCTGTTTTTCCCAGTTACTTTGGAGCAATTGCAAATGGATGAACCAAG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000034085.8 |
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| CDS-3UTR CAA 90 bp | AAGTCTGATGTCCTGAGTTCAATCCATGGAATCTACAATGGAAGCAGAAAGTCTTCAGAGATGCTGAAATaGTTTGGAAGGTCAGAGTCT | + |
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Preference number: 5 (lower is better) Translates to: KSDVLSSIHGIYNGSRKSSEMLK*FGRSES Trigger: AGACTCTGACCTTCCAAACAATTTCAGCATCTCTGA...AGACTTTCTGCTTCCATTGTAGATTCCATGGATTGAACTCAGGACATCAGACTT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034085.8 |
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| CDS-3UTR CAA 90 bp | AAGTCTGATGTCCTGAGTTCAATCCATGGAATCTACAATGGAAGCAGAAAGTCTCCCTGTTGGCTCTATTaGTGTAATCTCTGCTTCTTT | + |
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Preference number: 5 (lower is better) Translates to: KSDVLSSIHGIYNGSRKSPCWLY*CNLCFF Trigger: AAAGAAGCAGAGATTACACAAATAGAGCCAACAGGG...AGACTTTCTGCTTCCATTGTAGATTCCATGGATTGAACTCAGGACATCAGACTT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034085.8 |
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| CDS-3UTR CAA 90 bp | CTTGGTTCATCCATTTGCAATTGCTCCAAAGTAACTGGGAAAAACAGAAAGAAGTCTTCAAGCACATCTTaGTCTTTCCTTTTATTGTCC | + |
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Preference number: 5 (lower is better) Translates to: LGSSICNCSKVTGKNRKKSSSTS*SFLLLS Trigger: GGACAATAAAAGGAAAGACAAAGATGTGCTTGAAGA...CTTCTTTCTGTTTTTCCCAGTTACTTTGGAGCAATTGCAAATGGATGAACCAAG 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000034085.8 |
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| CDS GCA 72 bp | AGCTTGCCTCCTGACTCCTGGACAACGCGCTCAATCTaGTCATGCTCCCTTTCTGAGTTGCTGCTTCTCCAT | + |
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Preference number: 6 (lower is better) Translates to: SLPPDSWTTRSI*SCSLSELLLLH Trigger: ATGGAGAAGCAGCAACTCAGAAAGGGAGCATGAGCAGATTGAGCGCGTTGTCCAGGAGTCAGGAGGCAAGCT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034085.8 |
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| CDS GCA 72 bp | CCTCCTGACTCCTGGACAACGCGCTCAATCTGCTCATaGTCCCTTTCTGAGTTGCTGCTTCTCCATTTGTCT | + |
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Preference number: 6 (lower is better) Translates to: PPDSWTTRSICS*SLSELLLLHLS Trigger: AGACAAATGGAGAAGCAGCAACTCAGAAAGGGAGCATGAGCAGATTGAGCGCGTTGTCCAGGAGTCAGGAGG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034085.8 |
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| CDS CCA 72 bp | GAACACCTCAGCCTCTTCGGAGTCAAAGACTTCAGCTaGAGCACCAAAGGTTGTTACAGCTTGCAGTGCTGT | + |
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Preference number: 6 (lower is better) Translates to: EHLSLFGVKDFS*STKGCYSLQCC Trigger: ACAGCACTGCAAGCTGTAACAACCTTTGGTGCTCCAGCTGAAGTCTTTGACTCCGAAGAGGCTGAGGTGTTC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034085.8 |
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| CDS CAA 90 bp | TCCCTTTCTGAGTTGCTGCTTCTCCATTTGTCTTCAAGCACATCTTaGTCTTTCCTTTTATTGTCCTTAGCGGGGCTTCTGAAGGCCTGT | + |
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Preference number: 6 (lower is better) Translates to: SLSELLLLHLSSSTS*SFLLLSLAGLLKAC Trigger: ACAGGCCTTCAGAAGCCCCGCTAAGGACAATAAAAGGAAAGACAAAGATGTGCTTGAAGACAAATGGAGAAGCAGCAACTCAGAAAGGGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034085.8 |
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| CDS CCA 72 bp | TGCTTTTCGCACTCCGTGTATGCTTACAACATCACCTaGAGTCACTTGCTGTGTGAGTTCTTTGAGGTTATT | + |
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Preference number: 6 (lower is better) Translates to: CFSHSVYAYNIT*SHLLCEFFEVI Trigger: AATAACCTCAAAGAACTCACACAGCAAGTGACTCCAGGTGATGTTGTAAGCATACACGGAGTGCGAAAAGCA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034085.8 |
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